Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 38 of 345
Found at i:11307252 original size:14 final size:13
Alignment explanation
Indices: 11307212--11307253 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
11307202 CATGGTTCGT
11307212 ATTATGATAGAAA
1 ATTATGATAGAAA
11307225 TATTAT-AT-GAAA
1 -ATTATGATAGAAA
11307237 ATTATGATAAGAAA
1 ATTATGAT-AGAAA
11307251 ATT
1 ATT
11307254 TTATCAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 5 0.20
12 6 0.24
13 2 0.08
14 12 0.48
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (13 bp):
ATTATGATAGAAA
Found at i:11315147 original size:21 final size:24
Alignment explanation
Indices: 11315109--11315156 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
11315099 ATTATTAAAG
11315109 AATAATAATTTTACTTTT-TAATTA
1 AATAATAATTTTA-TTTTATAATTA
*
11315133 AATAATAA-TTT-TTTTATATTTA
1 AATAATAATTTTATTTTATAATTA
11315155 AA
1 AA
11315157 ATTTAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 4 0.18
22 7 0.32
23 3 0.14
24 8 0.36
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
AATAATAATTTTATTTTATAATTA
Found at i:11315313 original size:22 final size:22
Alignment explanation
Indices: 11315288--11315329 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
11315278 TAACTTTTAA
*
11315288 ATAAAAT-ATATTTATAAATAAC
1 ATAAAATCAT-TTTAAAAATAAC
11315310 ATAAAATCATTTTAAAAATA
1 ATAAAATCATTTTAAAAATA
11315330 TTTTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (22 bp):
ATAAAATCATTTTAAAAATAAC
Found at i:11317160 original size:12 final size:11
Alignment explanation
Indices: 11317138--11317206 Score: 50
Period size: 12 Copynumber: 5.8 Consensus size: 11
11317128 GTACACATTA
11317138 TTTATATTATT
1 TTTATATTATT
11317149 TTTATGATTATT
1 TTTAT-ATTATT
11317161 ATTGTAT-TTATT
1 -TT-TATATTATT
*
11317173 TTTACTACTATT
1 TTTA-TATTATT
*
11317185 ATTATATTTATT
1 TTTATA-TTATT
*
11317197 ATTAGTATTA
1 TTTA-TATTA
11317207 GTATTATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
10 2 0.04
11 10 0.21
12 29 0.60
13 4 0.08
14 3 0.06
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (11 bp):
TTTATATTATT
Found at i:11317193 original size:24 final size:23
Alignment explanation
Indices: 11317134--11317214 Score: 83
Period size: 24 Copynumber: 3.4 Consensus size: 23
11317124 TCATGTACAC
11317134 ATTATT-TATATTATTTTTATGATT
1 ATTATTATAT-TTATTTTTAT-ATT
* *
11317158 ATTATTGTATTTATTTTTACTACT
1 ATTATTATATTTATTTTTA-TATT
*
11317182 ATTATTATATTTATTATTAGTATT
1 ATTATTATATTTATTTTTA-TATT
*
11317206 AGTATTATA
1 ATTATTATA
11317215 ATTACTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
24 45 0.92
25 4 0.08
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (23 bp):
ATTATTATATTTATTTTTATATT
Found at i:11317431 original size:25 final size:24
Alignment explanation
Indices: 11317397--11317518 Score: 94
Period size: 25 Copynumber: 5.1 Consensus size: 24
11317387 GTATGTATTA
11317397 TATATATTTTTAATACTATATTATG
1 TATATATTTTTAATA-TATATTATG
* *
11317422 TATATA-TTTT-ATGT-TATATATA
1 TATATATTTTTAATATATAT-TATG
* *
11317444 TATATATTATTTATTATATTCTTATG
1 TATATATT-TTTAATATA-TATTATG
*
11317470 TATATATTTTTAATATCACATTAT-
1 TATATATTTTTAATAT-ATATTATG
*
11317494 TCATATATTTTT--TTTATATTATG
1 T-ATATATTTTTAATATATATTATG
11317517 TA
1 TA
11317519 AATACTTTCA
Statistics
Matches: 77, Mismatches: 11, Indels: 21
0.71 0.10 0.19
Matches are distributed among these distances:
21 3 0.04
22 17 0.22
23 6 0.08
24 8 0.10
25 29 0.38
26 12 0.16
27 2 0.03
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (24 bp):
TATATATTTTTAATATATATTATG
Found at i:11317441 original size:14 final size:13
Alignment explanation
Indices: 11317417--11317479 Score: 55
Period size: 12 Copynumber: 5.2 Consensus size: 13
11317407 TAATACTATA
11317417 TTATGTATATATT
1 TTATGTATATATT
11317430 TTATGT-TATA-T
1 TTATGTATATATT
* *
11317441 ATATATATAT-TAT
1 TTATGTATATAT-T
*
11317454 TTAT-TATAT-TC
1 TTATGTATATATT
11317465 TTATGTATATATT
1 TTATGTATATATT
11317478 TT
1 TT
11317480 TAATATCACA
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
11 9 0.22
12 18 0.45
13 13 0.32
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (13 bp):
TTATGTATATATT
Found at i:11317447 original size:20 final size:18
Alignment explanation
Indices: 11317422--11317462 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
11317412 CTATATTATG
*
11317422 TATATATTTTATGTTATATA
1 TATATATATTAT-TTAT-TA
11317442 TATATATATTATTTATTA
1 TATATATATTATTTATTA
11317460 TAT
1 TAT
11317463 TCTTATGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 4 0.20
20 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TATATATATTATTTATTA
Found at i:11317622 original size:2 final size:2
Alignment explanation
Indices: 11317606--11317655 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
11317596 TATGTTCTTG
* *
11317606 AT AT AT GT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11317648 AT AT AT AT
1 AT AT AT AT
11317656 GTTTTTTTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11317854 original size:26 final size:26
Alignment explanation
Indices: 11317825--11317876 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11317815 ATTATGTATA
*
11317825 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
11317851 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
11317877 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:11319656 original size:17 final size:17
Alignment explanation
Indices: 11319630--11319671 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
11319620 GAACCCTTAA
*
11319630 CAAAAACCCCTAGTGTG
1 CAAAACCCCCTAGTGTG
*
11319647 CAAAACCCCCTTGTGTG
1 CAAAACCCCCTAGTGTG
11319664 CGAAAACC
1 C-AAAACC
11319672 ATATGAGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (17 bp):
CAAAACCCCCTAGTGTG
Found at i:11330311 original size:67 final size:67
Alignment explanation
Indices: 11330203--11330341 Score: 251
Period size: 67 Copynumber: 2.1 Consensus size: 67
11330193 CGTTAAAGTC
*
11330203 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCATATTCAACTTATTCA
1 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
11330268 TA
66 TA
* *
11330270 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCCCATTCAACTTGTTCA
1 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
11330335 TA
66 TA
11330337 ATGAC
1 ATGAC
11330342 TAATTAATTT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.35
Consensus pattern (67 bp):
ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
TA
Found at i:11332335 original size:25 final size:25
Alignment explanation
Indices: 11332307--11332354 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11332297 TTATACCATG
* * *
11332307 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
11332332 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
11332355 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:11332457 original size:20 final size:20
Alignment explanation
Indices: 11332397--11332457 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
11332387 ATAAATATGG
*
11332397 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
11332417 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
11332437 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
11332457 T
1 T
11332458 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:11332534 original size:24 final size:24
Alignment explanation
Indices: 11332507--11332635 Score: 197
Period size: 24 Copynumber: 5.4 Consensus size: 24
11332497 GAGGAAGTGA
11332507 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
11332531 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
11332555 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
11332578 AAAAGGGCTTATGACCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
11332602 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
11332626 AAAAGAGGCT
1 AAAAG-GGCT
11332636 AGGCCTCCAA
Statistics
Matches: 98, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
23 22 0.22
24 72 0.73
25 4 0.04
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:11332600 original size:47 final size:47
Alignment explanation
Indices: 11332507--11332635 Score: 195
Period size: 47 Copynumber: 2.7 Consensus size: 47
11332497 GAGGAAGTGA
*
11332507 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGACCCAGTTATC
*
11332555 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGACCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGACCCAGTTATC
* *
11332602 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
11332636 AGGCCTCCAA
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
47 42 0.56
48 29 0.39
49 4 0.05
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGACCCAGTTATC
Found at i:11332887 original size:30 final size:31
Alignment explanation
Indices: 11332841--11332903 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
11332831 CGTTTACAGT
11332841 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
11332872 AAAGGCTTC-GCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
11332902 AA
1 AA
11332904 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:11339616 original size:25 final size:25
Alignment explanation
Indices: 11339587--11339634 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11339577 CCTTATAATG
* * *
11339587 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
11339612 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
11339635 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:11339703 original size:20 final size:20
Alignment explanation
Indices: 11339678--11339736 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
11339668 TAAATATGGT
11339678 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
11339698 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
11339718 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
11339737 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:11339718 original size:11 final size:11
Alignment explanation
Indices: 11339682--11339736 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
11339672 TATGGTATGT
11339682 ATGATATGCAC
1 ATGATATGCAC
* *
11339693 ATGAAATG--T
1 ATGATATGCAC
11339702 ATGATATGCAC
1 ATGATATGCAC
*
11339713 ATGATATG--T
1 ATGATATGCAC
11339722 ATGATATGCAC
1 ATGATATGCAC
11339733 ATGA
1 ATGA
11339737 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:11339814 original size:24 final size:24
Alignment explanation
Indices: 11339787--11339905 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
11339777 GAGGAAGTGA
*
11339787 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
11339811 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
11339834 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
11339858 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
11339882 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
11339906 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:11339856 original size:47 final size:48
Alignment explanation
Indices: 11339787--11339905 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
11339777 GAGGAAGTGA
11339787 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
11339834 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
11339882 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
11339906 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:11340132 original size:31 final size:31
Alignment explanation
Indices: 11340097--11340160 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
11340087 CGTTTACAGT
11340097 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
11340128 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
11340159 AA
1 AA
11340161 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:11341130 original size:67 final size:67
Alignment explanation
Indices: 11341022--11341160 Score: 251
Period size: 67 Copynumber: 2.1 Consensus size: 67
11341012 CGTTAAAGTC
*
11341022 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCATATTCAACTTATTCA
1 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
11341087 TA
66 TA
* *
11341089 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCCCATTCAACTTGTTCA
1 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
11341154 TA
66 TA
11341156 ATGAC
1 ATGAC
11341161 TAATTAATTT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.35
Consensus pattern (67 bp):
ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
TA
Found at i:11344681 original size:67 final size:67
Alignment explanation
Indices: 11344573--11344711 Score: 251
Period size: 67 Copynumber: 2.1 Consensus size: 67
11344563 CGTTAAAGTC
*
11344573 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCATATTCAACTTATTCA
1 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
11344638 TA
66 TA
* *
11344640 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCCCATTCAACTTGTTCA
1 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
11344705 TA
66 TA
11344707 ATGAC
1 ATGAC
11344712 TAATTAATTT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.35
Consensus pattern (67 bp):
ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
TA
Found at i:11346701 original size:25 final size:25
Alignment explanation
Indices: 11346672--11346719 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11346662 CCTTATAATG
* * *
11346672 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
11346697 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
11346720 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:11346805 original size:20 final size:20
Alignment explanation
Indices: 11346762--11346819 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
11346752 ATAAATATGG
11346762 TATGTATG--ATGCACATGA
1 TATGTATGATATGCACATGA
11346780 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
11346799 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
11346819 T
1 T
11346820 GTAATCATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.19
19 10 0.27
20 20 0.54
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:11346896 original size:24 final size:24
Alignment explanation
Indices: 11346869--11347011 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
11346859 GAGGAAGTGA
11346869 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
11346893 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
11346917 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
11346940 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
11346964 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
11346988 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
11347012 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:11346962 original size:47 final size:47
Alignment explanation
Indices: 11346869--11347011 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
11346859 GAGGAAGTGA
11346869 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
11346917 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
11346964 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
11347012 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:11346985 original size:71 final size:72
Alignment explanation
Indices: 11346869--11347012 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
11346859 GAGGAAGTGA
*
11346869 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
11346932 CCAGTTAT
65 CCAGTTAT
** * *
11346940 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
11347005 CAGTTAT
66 CAGTTAT
11347012 A
1 A
11347013 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:11347238 original size:31 final size:31
Alignment explanation
Indices: 11347203--11347266 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
11347193 CGTTTACAGT
11347203 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
11347234 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
11347265 AA
1 AA
11347267 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:11354002 original size:25 final size:25
Alignment explanation
Indices: 11353974--11354021 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11353964 TTATACCATG
* * *
11353974 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
11353999 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
11354022 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:11354124 original size:20 final size:20
Alignment explanation
Indices: 11354064--11354124 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
11354054 ATAAATATGG
*
11354064 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
11354084 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
11354104 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
11354124 T
1 T
11354125 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:11354200 original size:24 final size:24
Alignment explanation
Indices: 11354173--11354291 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
11354163 GAGGAAGTGA
*
11354173 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
11354197 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
11354220 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
11354244 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
11354268 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
11354292 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:11354242 original size:47 final size:48
Alignment explanation
Indices: 11354173--11354291 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
11354163 GAGGAAGTGA
11354173 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
11354220 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
11354268 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
11354292 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:11354518 original size:31 final size:31
Alignment explanation
Indices: 11354483--11354546 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
11354473 CGTTTACAGT
11354483 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
11354514 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
11354545 AA
1 AA
11354547 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:11357721 original size:75 final size:75
Alignment explanation
Indices: 11357602--11357772 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
11357592 CATGGCAAAG
** *
11357602 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
11357661 CCATACTGAGC
65 CCATACCGAGC
11357672 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
11357737 CATACCGAGT
66 CATACCGAGC
***
11357747 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
11357773 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:11357740 original size:35 final size:35
Alignment explanation
Indices: 11357605--11357770 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
11357595 GGCAAAGTGT
* **
11357605 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
11357640 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
11357675 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
11357715 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
11357750 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
11357771 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:11365211 original size:75 final size:75
Alignment explanation
Indices: 11365092--11365263 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
11365082 CATGGCAAAG
** *
11365092 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
11365151 CCATACTGAGC
65 CCATACCGAGC
11365162 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
11365227 CATACCGAGT
66 CATACCGAGC
***
11365237 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
11365264 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:11365230 original size:35 final size:35
Alignment explanation
Indices: 11365095--11365261 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
11365085 GGCAAAGTGT
* **
11365095 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
11365130 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
11365165 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
11365205 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
11365241 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
11365262 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:11365253 original size:36 final size:35
Alignment explanation
Indices: 11365191--11365261 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
11365181 ATTATCAAAT
* *
11365191 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
11365226 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
11365262 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:11374755 original size:20 final size:20
Alignment explanation
Indices: 11374714--11374755 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
11374704 CTAAACATTG
* *
11374714 AACCCCAAACTAGAGTCTTA
1 AACCCCAAACTAGAATCCTA
*
11374734 AACCCCAAACTCGAATCCTA
1 AACCCCAAACTAGAATCCTA
11374754 AA
1 AA
11374756 TCCTTAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.33, G:0.07, T:0.17
Consensus pattern (20 bp):
AACCCCAAACTAGAATCCTA
Found at i:11377680 original size:13 final size:13
Alignment explanation
Indices: 11377672--11377696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11377662 TCCTTTTCTT
11377672 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
11377685 TTTTTCTTTTTT
1 TTTTTCTTTTTT
11377697 AATATTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:11377680 original size:21 final size:21
Alignment explanation
Indices: 11377656--11377696 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11377646 TAATTTTAGC
11377656 CTTTATTCCTTTTCTTTTTTT
1 CTTTATTCCTTTTCTTTTTTT
* *
11377677 CTTTTTTCTTTTTCTTTTTT
1 CTTTATTCCTTTTCTTTTTT
11377697 AATATTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (21 bp):
CTTTATTCCTTTTCTTTTTTT
Found at i:11392505 original size:13 final size:14
Alignment explanation
Indices: 11392489--11392518 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
11392479 GTAAAATATT
11392489 TTTC-GAAAAATGA
1 TTTCTGAAAAATGA
11392502 TTTCTGAAAAATGA
1 TTTCTGAAAAATGA
11392516 TTT
1 TTT
11392519 ACTTTTCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (14 bp):
TTTCTGAAAAATGA
Found at i:11392842 original size:30 final size:30
Alignment explanation
Indices: 11392806--11392865 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
11392796 ATTTTTGGAC
11392806 TAAAGTTCATACCAGACAATAATATACAAA
1 TAAAGTTCATACCAGACAATAATATACAAA
11392836 TAAAGTTCATACCAGACAATAATATACAAA
1 TAAAGTTCATACCAGACAATAATATACAAA
11392866 GAAGGAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (30 bp):
TAAAGTTCATACCAGACAATAATATACAAA
Found at i:11401025 original size:53 final size:53
Alignment explanation
Indices: 11400884--11401034 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
11400874 ACAAGTGTGC
* **
11400884 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
11400937 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
11400990 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
11401035 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:11408540 original size:53 final size:53
Alignment explanation
Indices: 11408399--11408549 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
11408389 ACAAGTGTGC
* **
11408399 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
11408452 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
11408505 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
11408550 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:11414554 original size:53 final size:53
Alignment explanation
Indices: 11414413--11414563 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
11414403 ACAAGTGTGC
* **
11414413 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
11414466 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
11414519 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
11414564 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:11422069 original size:53 final size:53
Alignment explanation
Indices: 11421928--11422078 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
11421918 ACAAGTGTGC
* **
11421928 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
11421981 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
11422034 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
11422079 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:11429586 original size:53 final size:53
Alignment explanation
Indices: 11429445--11429595 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
11429435 ACAAGTGTGC
* **
11429445 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
11429498 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
11429551 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
11429596 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:11431226 original size:131 final size:131
Alignment explanation
Indices: 11431037--11431533 Score: 629
Period size: 130 Copynumber: 3.8 Consensus size: 131
11431027 AATTTGGAGA
* * * * *
11431037 ACATGAATGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAGATCACAACCCAGCAT
1 ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
*
11431102 GATAGGGCACGATTCCCCAAATTGCCAAACATCGAACATTACCTTCGTTTTAGAGAATTTTTAAA
66 GATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAGAGAATTTTTAAA
11431167 G
131 G
* * * * * * *
11431168 ACATGGGTGAAATTCCAAAGGAATATTCAATTGTTTTTAACGAACGGGAAATCGCAACCCAACAC
1 ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
* ** *
11431233 AATAGGGCACGATT-CCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGGAGAATTTTTAAA
66 GATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAGAGAATTTTTAAA
11431297 G
131 G
* *
11431298 ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACGAACAGGAAATTGCAACCCAGCAC
1 ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
* * * * *
11431363 GATAGGGCACGACTCCCCGAATTGCCAAACATCGAACATTTCCTTCATTTTAAAGAGTTTTTAGA
66 GATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAGAGAATTTTTA-A
*
11431428 AA
130 AG
* * * * * * **
11431430 ACATGAATGAAATTCTAAAGGGACATTCGATTATTTTGAGCAAAC-GAGAAATTGCAACTTAGCA
1 ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAG-GAAATCGCAACCCAGCA
* ** *
11431494 CGTTAGGGCACGATTCCGTGAATTGCCAAATATCGAACAT
65 CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACAT
11431534 CACATTCAAA
Statistics
Matches: 316, Mismatches: 47, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
130 117 0.37
131 108 0.34
132 91 0.29
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (131 bp):
ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
GATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAGAGAATTTTTAAA
G
Found at i:11434947 original size:133 final size:133
Alignment explanation
Indices: 11434702--11435232 Score: 695
Period size: 133 Copynumber: 4.0 Consensus size: 133
11434692 ACGAGATTTG
* *
11434702 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGACTTAAATCTGCTTCACTG
1 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
* * * *** * * * * *
11434767 CAACTTTAGGAAGACAAGATTCGTTGTTTTTGATCTGTTCCATTGCAACTTCAGGGAAACAAGAT
66 CAACTTCAGAAAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGACAAGAT
11434832 CTA
131 CTA
*
11434835 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTA
1 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
*
11434900 CAACTTCAGAAAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGACAGGAT
66 CAACTTCAGAAAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGACAAGAT
*
11434965 TTA
131 CTA
* *
11434968 CAATCTTTAGCCTACTTCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
1 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
* *** ** * *
11435033 CAACTTCA-AGAAGATTAGATTTGTCGTCTTCGATCTGCTCCGTTGTAACTTCAGAGAGACAAGA
66 CAACTTCAGA-AAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGACAAGA
11435097 TCTA
130 TCTA
* * * * *
11435101 CAATCTTCAACCTACTCCACTATAACTTTAGGGAGCTAGGATAGTAGCTTAAATCTGTTTCACTG
1 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
* * * * * * * *
11435166 TAACTTCAGAAAGACTAGATTTACCGTCTTCAATCTGTTCCGCTGCAATTTTAGGGAGACAAAAT
66 CAACTTCAGAAAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGACAAGAT
11435231 CT
131 CT
11435233 GTAGAATCAG
Statistics
Matches: 348, Mismatches: 48, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
132 1 0.00
133 346 0.99
134 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (133 bp):
CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
CAACTTCAGAAAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGACAAGAT
CTA
Found at i:11435010 original size:266 final size:266
Alignment explanation
Indices: 11434696--11435226 Score: 783
Period size: 266 Copynumber: 2.0 Consensus size: 266
11434686 CTAGAGACGA
*
11434696 GATTTGCAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGACTTAAATCTGCT
1 GATTTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGACTTAAATCTGCT
* * * * * * *
11434761 TCACTGCAACTTTAGGAAGACAAGATTCGTTGTTTTTGATCTGTTCCATTGCAACTTCAGGGAAA
66 TCACTGCAACTTCAAGAAGACAAGATTCGTCGTCTTCGATCTGCTCCATTGCAACTTCAGAGAAA
* * *
11434826 CAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCT
131 CAAGATCTACAATCTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATAGTAGCTTAAATCT
*
11434891 GCTTCACTACAACTTCAGAAAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
196 GCTTCACTACAACTTCAGAAAGACTAGATTCACCGTCTTCAATCTGCTCCACTGCAACTTCAGGG
11434956 AGACAG
261 AGACAG
* * * *
11434962 GATTTACAATCTTTAGCCTACTTCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCT
1 GATTTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGACTTAAATCTGCT
** * * * *
11435027 TCACTGCAACTTCAAGAAGATTAGATTTGTCGTCTTCGATCTGCTCCGTTGTAACTTCAGAGAGA
66 TCACTGCAACTTCAAGAAGACAAGATTCGTCGTCTTCGATCTGCTCCATTGCAACTTCAGAGAAA
*
11435092 CAAGATCTACAATCTTCAACCTACTCCACTATAACTTTAGGGAGCTAGGATAGTAGCTTAAATCT
131 CAAGATCTACAATCTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATAGTAGCTTAAATCT
* ** * * * * *
11435157 GTTTCACTGTAACTTCAGAAAGACTAGATTTACCGTCTTCAATCTGTTCCGCTGCAATTTTAGGG
196 GCTTCACTACAACTTCAGAAAGACTAGATTCACCGTCTTCAATCTGCTCCACTGCAACTTCAGGG
11435222 AGACA
261 AGACA
11435227 AAATCTGTAG
Statistics
Matches: 234, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
266 234 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (266 bp):
GATTTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGACTTAAATCTGCT
TCACTGCAACTTCAAGAAGACAAGATTCGTCGTCTTCGATCTGCTCCATTGCAACTTCAGAGAAA
CAAGATCTACAATCTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATAGTAGCTTAAATCT
GCTTCACTACAACTTCAGAAAGACTAGATTCACCGTCTTCAATCTGCTCCACTGCAACTTCAGGG
AGACAG
Found at i:11439701 original size:16 final size:15
Alignment explanation
Indices: 11439676--11439705 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
11439666 GGAAAATAGG
11439676 ATTTTTTTTATTTTT
1 ATTTTTTTTATTTTT
11439691 ATTTTTATTTATTTT
1 ATTTTT-TTTATTTT
11439706 GTAAATTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
ATTTTTTTTATTTTT
Found at i:11454047 original size:179 final size:180
Alignment explanation
Indices: 11453742--11454666 Score: 1043
Period size: 179 Copynumber: 5.2 Consensus size: 180
11453732 CATTGGTAAA
* * * * *
11453742 AATTGAAGATTTTATCTCCCTGAGATTGCAGTGGAACAGATCTTTGCAGATGGTGAATCTTATCT
1 AATTAAAGATTTTATCTCCCTGAGATTGCAGCGGAGCAGATCTTCGAAGATGGTGAATCTTATCT
* * *
11453807 CCATGTATCGGCAATGGAGCAGATTTTACCACCAGCCTCATCTCCCTGAGGTAGCAAGAGAGTAG
66 CCATGTATCGGCAATGGAGTAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGTAG
*
11453872 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAG
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG
** *
11453922 -ATTAAAGATTTTATCTCCCTGAGATTGCAGCGGATTAGATCTTCGCAGATGGT-AAGTCTTATC
1 AATTAAAGATTTTATCTCCCTGAGATTGCAGCGGAGCAGATCTTCGAAGATGGTGAA-TCTTATC
* * * * *
11453985 TCCATGTATCGGTAATGGAGAAAATTTTACCACCAACCTCATCTCTCTGAGATAGCAAGAGAGCA
65 TCCATGTATCGGCAATGGAGTAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGTA
*
11454050 GGTTGAAGAATGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAG
130 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG
* * * * * * * *
11454101 -ATTGAAGATCTTATTTCCCTAAGCA--GTAACGGAGCAGA---TCGAAAAAGGTGAATCTTATC
1 AATTAAAGATTTTATCTCCCTGAG-ATTGCAGCGGAGCAGATCTTCGAAGATGGTGAATCTTATC
* * * * * *
11454160 TCCATGTATTGGTAATGGA-TGAGATTTAAGCC-CTAAGCTTTATCTCTCTGAGGTAGCAAGAGA
65 TCCATGTATCGGCAATGGAGT-AGATTTTA-CCACCAA-CCTCATCTCTCTGAGGTAGCAAGAGA
* * *
11454223 GTAGGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCCAGGAAGTAGACTG-AG
127 GTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG
* * * * * * *
11454276 AATTGAAA-ATTTTATCTCCTTGAGATCGCAGCAGAGTAGATCTTCGTAGATGGTGAGTTTTATC
1 AATT-AAAGATTTTATCTCCCTGAGATTGCAGCGGAGCAGATCTTCGAAGATGGTGAATCTTATC
* *
11454340 TTCATGTATCGGCAATGGAGTAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGGGCT
65 TCCATGTATCGGCAATGGAGTAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGAG-T
* * *
11454405 -GGTTGAAGAATGAGCCTTATCTTCCTCAGGTAGCAAGGAAGCAGACTG-GG
129 AGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG
* * ** * *
11454455 AATTGAAGATTTTATCTCCCT-AAACAGTAGCAGAGCAGA---TCGAAGATGGTGAATCTTATCT
1 AATTAAAGATTTTATCTCCCTGAGATTGCAGCGGAGCAGATCTTCGAAGATGGTGAATCTTATCT
* * * *
11454516 CCATGTATCGGCAATGGAGTAGATTCTACCACTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAG
66 CCATGTATCGGCAATGGAGTAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGTAG
* * * *
11454581 GTTGAAGATTAAGTCCTATCTTCCTGAAGTAGCAAGGAAGCAGACTG-AG
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG
* *
11454630 AATT---GA-ATTATCTCCCTGA-AGTTGCAGTGGAGCAGAT
1 AATTAAAGATTTTATCTCCCTGAGA-TTGCAGCGGAGCAGAT
11454667 TTTAGCTACT
Statistics
Matches: 629, Mismatches: 95, Indels: 49
0.81 0.12 0.06
Matches are distributed among these distances:
171 11 0.02
172 13 0.02
175 168 0.27
176 88 0.14
177 11 0.02
178 26 0.04
179 267 0.42
180 44 0.07
181 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (180 bp):
AATTAAAGATTTTATCTCCCTGAGATTGCAGCGGAGCAGATCTTCGAAGATGGTGAATCTTATCT
CCATGTATCGGCAATGGAGTAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGTAG
GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG
Found at i:11454508 original size:355 final size:355
Alignment explanation
Indices: 11453789--11454636 Score: 1226
Period size: 355 Copynumber: 2.4 Consensus size: 355
11453779 AGATCTTTGC
* * *
11453789 AGATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCAC-CAGCCTCATCTCCC
1 AGATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGA-TTTACCACTAAGCCTTATCTCTC
11453853 TGAGGTAGCAAGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACT
65 TGAGGTAGCAAGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACT
* * *
11453918 GA-AGATT-AAAGATTTTATCTCCCTGAGATTGCAGCGGATTAGATCTTCGCAGATGGTAAGTCT
130 GAGA-ATTGAAAGATTTTATCTCCCTGAGATCGCAGCAGAGTAGATCTTCGCAGATGGTAAGTCT
*
11453981 TATCTCCATGTATCGGTAATGGAGAAAATTTTACCACCAACCTCATCTCTCTGAGATAGCAAGAG
194 TATCTCCATGTATCGGCAATGGAGAAAATTTTACCACCAACCTCATCTCTCTGAGATAGCAAGAG
*
11454046 AGCAGGTTGAAGAATGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATC
259 AGCAGGTTGAAGAATGAGCCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATC
* * *
11454111 TTATTTCCCTAAGCAGTAACGGAGCAGATCGA
324 TTATCTCCCTAAACAGTAACAGAGCAGATCGA
* * * * *
11454143 AAAAGGTGAATCTTATCTCCATGTATTGGTAATGGATG-AGATTTAAGCC-CTAAGCTTTATCTC
1 AGATGGTGAATCTTATCTCCATGTATCGGCAATGGA-GCAGATTT-A-CCACTAAGCCTTATCTC
* *
11454206 TCTGAGGTAGCAAGAGAGTAGGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCCAGGAAGTAGA
63 TCTGAGGTAGCAAGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGA
* * * *
11454271 CTGAGAATTGAAA-ATTTTATCTCCTTGAGATCGCAGCAGAGTAGATCTTCGTAGATGGTGAGTT
128 CTGAGAATTGAAAGATTTTATCTCCCTGAGATCGCAGCAGAGTAGATCTTCGCAGATGGTAAGTC
* * * *
11454335 TTATCTTCATGTATCGGCAATGGAGTAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGA
193 TTATCTCCATGTATCGGCAATGGAGAAAATTTTACCACCAACCTCATCTCTCTGAGATAGCAAGA
* * * *
11454400 GGGCTGGTTGAAGAATGAGCCTTATCTTCCTCAGGTAGCAAGGAAGCAGACTG-GGAATTGAAGA
258 GAGCAGGTTGAAGAATGAGCCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAG-ATTGAAGA
* *
11454464 TTTTATCTCCCTAAACAGTAGCAGAGCAGATCGA
322 TCTTATCTCCCTAAACAGTAACAGAGCAGATCGA
*
11454498 AGATGGTGAATCTTATCTCCATGTATCGGCAATGGAGTAGATTCTACCACTAA-CCTTATCTCTC
1 AGATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATT-TACCACTAAGCCTTATCTCTC
* * * * * *
11454562 TGAGGTAGCAAGAGAGCAGGTTGAAGATTAAGTCCTATCTTCCTGAAGTAGCAAGGAAGCAGACT
65 TGAGGTAGCAAGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACT
11454627 GAGAATTGAA
130 GAGAATTGAA
11454637 TTATCTCCCT
Statistics
Matches: 439, Mismatches: 45, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
353 3 0.01
354 118 0.27
355 313 0.71
356 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (355 bp):
AGATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTACCACTAAGCCTTATCTCTCT
GAGGTAGCAAGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTG
AGAATTGAAAGATTTTATCTCCCTGAGATCGCAGCAGAGTAGATCTTCGCAGATGGTAAGTCTTA
TCTCCATGTATCGGCAATGGAGAAAATTTTACCACCAACCTCATCTCTCTGAGATAGCAAGAGAG
CAGGTTGAAGAATGAGCCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTT
ATCTCCCTAAACAGTAACAGAGCAGATCGA
Found at i:11456801 original size:2 final size:2
Alignment explanation
Indices: 11456794--11456824 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
11456784 TTTGTCAACT
11456794 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11456825 TATGTGGTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11456958 original size:2 final size:2
Alignment explanation
Indices: 11456951--11456993 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
11456941 TTGTGTACAT
11456951 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11456993 T
1 T
11456994 TATGTGGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11456998 original size:169 final size:169
Alignment explanation
Indices: 11456794--11457122 Score: 649
Period size: 169 Copynumber: 1.9 Consensus size: 169
11456784 TTTGTCAACT
11456794 TATATATATATATATATATATATATATATATTATGTGGTCATTAATTCATCATTATGTTGAAAAT
1 TATATATATATATATATATATATATATATATTATGTGGTCATTAATTCATCATTATGTTGAAAAT
11456859 GTCTTATACTATATTAATTTCTAATTCCATTTTATTTTGTACATATTTTTGTGCATCATTTTATA
66 GTCTTATACTATATTAATTTCTAATTCCATTTTATTTTGTACATATTTTTGTGCATCATTTTATA
11456924 TTGTGTCATGTCAATTATTGTGTACATTATATATATATA
131 TTGTGTCATGTCAATTATTGTGTACATTATATATATATA
*
11456963 TATATATATATATATATATATATATATATATTATGTGGTCATTAATTCATCTTTATGTTGAAAAT
1 TATATATATATATATATATATATATATATATTATGTGGTCATTAATTCATCATTATGTTGAAAAT
11457028 GTCTTATACTATATTAATTTCTAATTCCATTTTATTTTGTACATATTTTTGTGCATCATTTTATA
66 GTCTTATACTATATTAATTTCTAATTCCATTTTATTTTGTACATATTTTTGTGCATCATTTTATA
11457093 TTGTGTCATGTCAATTATTGTGTACATTAT
131 TTGTGTCATGTCAATTATTGTGTACATTAT
11457123 TTTTGTATTA
Statistics
Matches: 159, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 159 1.00
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.51
Consensus pattern (169 bp):
TATATATATATATATATATATATATATATATTATGTGGTCATTAATTCATCATTATGTTGAAAAT
GTCTTATACTATATTAATTTCTAATTCCATTTTATTTTGTACATATTTTTGTGCATCATTTTATA
TTGTGTCATGTCAATTATTGTGTACATTATATATATATA
Found at i:11465519 original size:131 final size:132
Alignment explanation
Indices: 11465352--11465874 Score: 653
Period size: 130 Copynumber: 4.0 Consensus size: 132
11465342 AATTTGGAGA
* *
11465352 ACATGAGTGAAA-TTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAGATCGCAACCCAGCA
1 ACATGAGTGAAATTTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAACA
* *
11465416 CGATAGGGCACAATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAGAGAATTTTTAA
66 CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAA
11465481 AG
131 AG
* * *
11465483 ACAT-AGGTGAAATTTC-AAAGGAATATTCGATTATTTTGAACGAACGGGAAATCGCAACCCAGC
1 ACATGA-GTGAAATTTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAAC
** **
11465546 ACGATAGGGCACGATT-CCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGGAGAATTTTTA
65 ACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTA
11465610 AAG
130 AAG
* * * * * *
11465613 ATATGAGTGAAA-TTCCAAAGGAGTATTCGATTATTTTGAACGAACGGGAAATTGCAACCCAACA
1 ACATGAGTGAAATTTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAACA
* * * *
11465677 CGATAGGGCACGACTCCCCGAATTGCCAAACATCGAACATTTCCTTCATTTTAAAGAGTTTTTAG
66 CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTA-
*
11465742 AAA
130 AAG
* * * * * * *
11465745 ACATGAAT-AAAATTCTAAAGGGACATTCGATTATTTTGAGCAAACAAGAAATTGCAACCCAACA
1 ACATGAGTGAAATTTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAACA
* * * * ** * *
11465809 CGTTAGGGCACGATTTCGCGAATTGCCAAATATCGAACATCGCCTTCGTTTCAAAGAACTTTTAA
66 CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAA
11465874 A
131 A
11465875 TGAATAATTA
Statistics
Matches: 344, Mismatches: 41, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
129 3 0.01
130 117 0.34
131 116 0.34
132 108 0.31
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (132 bp):
ACATGAGTGAAATTTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAACA
CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAA
AG
Found at i:11465715 original size:261 final size:263
Alignment explanation
Indices: 11465354--11465844 Score: 693
Period size: 261 Copynumber: 1.9 Consensus size: 263
11465344 TTTGGAGAAC
* * *
11465354 ATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAGATCGCAACCCAGCACGA
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAACACGA
* * * *
11465419 TAGGGCACAATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAGAGAATTTTTA-AAG
66 TAGGGCACAACTCCCCGAATTGCCAAACATCGAACATTACCTTCATTTTAAAGAATTTTTAGAAA
* * * * ** *
11465483 ACAT-AGGTGAAATT-TCAAAGGAATATTCGATTATTTTGAACGAACGGGAAATCGCAACCCAGC
131 ACATGA-ATAAAATTCT-AAAGGAACATTCGATTATTTTGAACAAACAAGAAATCGCAACCCAAC
11465546 ACGATAGGGCACGA-TTCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGGAGAATTTTTA
194 ACGATAGGGCACGATTTCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGGAGAATTTTTA
11465610 AAGAT
259 AAGAT
* * * *
11465615 ATGAGTGAAATTCCAAAGGAGTATTCGATTATTTTGAACGAACGGGAAATTGCAACCCAACACGA
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAACACGA
* * *
11465680 TAGGGCACGACTCCCCGAATTGCCAAACATCGAACATTTCCTTCATTTTAAAGAGTTTTTAGAAA
66 TAGGGCACAACTCCCCGAATTGCCAAACATCGAACATTACCTTCATTTTAAAGAATTTTTAGAAA
* * *
11465745 ACATGAATAAAATTCTAAAGGGACATTCGATTATTTTGAGCAAACAAGAAATTGCAACCCAACAC
131 ACATGAATAAAATTCTAAAGGAACATTCGATTATTTTGAACAAACAAGAAATCGCAACCCAACAC
* * *
11465810 GTTAGGGCACGATTTCGCGAATTGCCAAATATCGA
196 GATAGGGCACGATTTCCCGAATTGCCAAACATCGA
11465845 ACATCGCCTT
Statistics
Matches: 199, Mismatches: 27, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
261 113 0.57
262 64 0.32
263 22 0.11
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (263 bp):
ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAACACGA
TAGGGCACAACTCCCCGAATTGCCAAACATCGAACATTACCTTCATTTTAAAGAATTTTTAGAAA
ACATGAATAAAATTCTAAAGGAACATTCGATTATTTTGAACAAACAAGAAATCGCAACCCAACAC
GATAGGGCACGATTTCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGGAGAATTTTTAAA
GAT
Found at i:11468646 original size:12 final size:12
Alignment explanation
Indices: 11468619--11468656 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
11468609 GTTTTTATTT
*
11468619 TTTTGTTTTTAG
1 TTTTGTTTTTTG
11468631 -TTTGTTTTTTG
1 TTTTGTTTTTTG
*
11468642 TTTTGTTTTGTG
1 TTTTGTTTTTTG
11468654 TTT
1 TTT
11468657 GCATGGGCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.03, C:0.00, G:0.18, T:0.79
Consensus pattern (12 bp):
TTTTGTTTTTTG
Found at i:11472025 original size:271 final size:270
Alignment explanation
Indices: 11471519--11472058 Score: 647
Period size: 271 Copynumber: 2.0 Consensus size: 270
11471509 TATTTTAAAT
* * *
11471519 TATCCTAAAATTTGGAATAAATAAATAATATAAAACCTAATAAATACAATATTAGGCTCGCATAT
1 TATCCTAAAATTTGGAATAAATAAATAATACAAAACCTAATAAATACAATATTAGACTCACATAT
* * *
11471584 AATTAAAATTAAGCCTTAAAATCAAATTTAAACTCAAATTAAAGTCCGAAACTCATAATAATCTC
66 AATCAAAATTAAGCCTTAAAATCAAATTTAAACTCAAATTAAAGCCCAAAACTCATAATAATCTC
* * *
11471649 ACCCAAAAATTTTATTCGTGCAATCTTCATTAAAACAACCATAACTTGAGCTCCCCAACTCGAAA
131 ACCCAAAAATTTTATTCATGCAATCTTCAATAAAACAACCATAACTTAAGCTCCCCAACTCGAAA
* * * *
11471714 CCGAATAATTTAAAGTGCATTTTAAAACTAATAGATAGCTCTTCGATCGATATAAAAAAAATCTC
196 CCGAATAATTCAAAGTACATTTTAAAACTAACAAATAGCTCTTCGATCGATAT-AAAAAAATCTC
11471779 AACCTAGAAAA
260 AACCTAGAAAA
* * * *
11471790 TATCCTAAAATTTTGAATAAATAAATAATGCAAAACCTAATAAATATAATATT-GAACTCATATA
1 TATCCTAAAATTTGGAATAAATAAATAATACAAAACCTAATAAATACAATATTAG-ACTCACATA
* * ** * **
11471854 TAATCAAAATTAAGCCTTCAAATCGAATTTAAACTTGAATTAAAGCCCAAAAGTTGTAATAATCT
65 TAATCAAAATTAAGCCTTAAAATCAAATTTAAACTCAAATTAAAGCCCAAAACTCATAATAATCT
*** * * *** *
11471919 TGTCTATAAATTTTACTT-ATGCAATCTTCAATAAAATGGCCATGACTTAAGCT-CCCAACCTCG
130 CACCCAAAAATTTTA-TTCATGCAATCTTCAATAAAACAACCATAACTTAAGCTCCCCAA-CTCG
* * * * * *
11471982 AAATC-AAGTGATTCAAAGTATATTTTGAAGCTAACAAATAGCTCTTCGATCGATATAAAAATAT
193 AAACCGAA-TAATTCAAAGTACATTTTAAAACTAACAAATAGCTCTTCGATCGATATAAAAAAAT
*
11472046 TTCAACCTAGAAA
257 CTCAACCTAGAAA
11472059 TGTTTGGATC
Statistics
Matches: 225, Mismatches: 40, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
270 27 0.12
271 196 0.87
272 2 0.01
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (270 bp):
TATCCTAAAATTTGGAATAAATAAATAATACAAAACCTAATAAATACAATATTAGACTCACATAT
AATCAAAATTAAGCCTTAAAATCAAATTTAAACTCAAATTAAAGCCCAAAACTCATAATAATCTC
ACCCAAAAATTTTATTCATGCAATCTTCAATAAAACAACCATAACTTAAGCTCCCCAACTCGAAA
CCGAATAATTCAAAGTACATTTTAAAACTAACAAATAGCTCTTCGATCGATATAAAAAAATCTCA
ACCTAGAAAA
Found at i:11474705 original size:31 final size:31
Alignment explanation
Indices: 11474667--11474727 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
11474657 TTTCATATTT
11474667 CATATTTCATAACACTGGGCCGAAGCCTTTC
1 CATATTTCATAACACTGGGCCGAAGCCTTTC
**
11474698 CATATTTCATATTACTGGGCCGAAGCCTTT
1 CATATTTCATAACACTGGGCCGAAGCCTTT
11474728 ACTGTACACG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATTTCATAACACTGGGCCGAAGCCTTTC
Found at i:11474995 original size:23 final size:23
Alignment explanation
Indices: 11474941--11475083 Score: 241
Period size: 23 Copynumber: 6.1 Consensus size: 23
11474931 CCTAGCCTCT
*
11474941 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
11474964 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
11474988 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
11475011 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
11475034 TTTTGATAACTGGGGCATAAGCCT
1 -TTTAATAACTGGGGCATAAGCCC
11475058 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
11475081 TTT
1 TTT
11475084 TTCACTTCCT
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
23 70 0.62
24 43 0.38
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:11475024 original size:70 final size:70
Alignment explanation
Indices: 11474941--11475083 Score: 259
Period size: 70 Copynumber: 2.0 Consensus size: 70
11474931 CCTAGCCTCT
11474941 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
11475006 AGCCC
66 AGCCC
* * *
11475011 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCTTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
11475076 AGCCC
66 AGCCC
11475081 TTT
1 TTT
11475084 TTCACTTCCT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (70 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
AGCCC
Found at i:11475084 original size:47 final size:47
Alignment explanation
Indices: 11474934--11475084 Score: 250
Period size: 47 Copynumber: 3.2 Consensus size: 47
11474924 CTGGAGGCCT
*
11474934 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAG-CCTTTTAATAACTGGGGCATA
*
11474983 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCTTTTAATAACTGGGGCATA
*
11475029 AGCCCTTTTGATAACTGGGGCATAAGCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCTTTTAATAACTGGGGCATA
11475076 AGCCCTTTT
1 AGCCCTTTT
11475085 TCACTTCCTC
Statistics
Matches: 97, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
46 25 0.26
47 67 0.69
48 1 0.01
49 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCTTTTAATAACTGGGGCATA
Found at i:11475156 original size:9 final size:9
Alignment explanation
Indices: 11475142--11475198 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
11475132 ATCTCATGTG
11475142 CATATCATA
1 CATATCATA
*
11475151 CATATCATGTG
1 CATATCA--TA
11475162 CATATCATA
1 CATATCATA
* *
11475171 CATGTCATGTG
1 CATATCA--TA
11475182 CATATCATA
1 CATATCATA
11475191 CATATCAT
1 CATATCAT
11475199 GTTTATTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:11475158 original size:20 final size:20
Alignment explanation
Indices: 11475130--11475200 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
11475120 GCATTTATGA
*
11475130 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
11475150 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
11475170 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
11475190 ACATATCATGT
1 ACATATCATGT
11475201 TTATTAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:11475165 original size:11 final size:11
Alignment explanation
Indices: 11475135--11475189 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
11475125 TATGAACATC
11475135 TCATGTGCATA
1 TCATGTGCATA
*
11475146 TCA--TACATA
1 TCATGTGCATA
11475155 TCATGTGCATA
1 TCATGTGCATA
* *
11475166 TCA--TACATG
1 TCATGTGCATA
11475175 TCATGTGCATA
1 TCATGTGCATA
11475186 TCAT
1 TCAT
11475190 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:11475265 original size:25 final size:25
Alignment explanation
Indices: 11475237--11475284 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11475227 ATATATAAAC
* * *
11475237 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
11475262 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
11475285 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:11477909 original size:21 final size:19
Alignment explanation
Indices: 11477883--11477952 Score: 61
Period size: 22 Copynumber: 3.4 Consensus size: 19
11477873 TAAGAAAACA
11477883 TTAAAATAATTAATAAAATAT
1 TTAAAA-AATTAA-AAAATAT
*
11477904 TTAAAAATTTAAAAAA-AT
1 TTAAAAAATTAAAAAATAT
*
11477922 TTAAAAAAAGTTCAAAAAAATTT
1 TT-AAAAAA-TT--AAAAAATAT
11477945 TTAAAAAA
1 TTAAAAAA
11477953 AATTATCCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
18 4 0.10
19 9 0.22
20 7 0.17
21 6 0.15
22 12 0.29
23 3 0.07
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (19 bp):
TTAAAAAATTAAAAAATAT
Found at i:11477919 original size:10 final size:10
Alignment explanation
Indices: 11477906--11477944 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
11477896 TAAAATATTT
11477906 AAAAATTTAA
1 AAAAATTTAA
11477916 AAAAATTTAA
1 AAAAATTTAA
*
11477926 AAAAAGTTCAA
1 AAAAA-TTTAA
11477937 AAAAATTT
1 AAAAATTT
11477945 TTAAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (10 bp):
AAAAATTTAA
Found at i:11477928 original size:11 final size:11
Alignment explanation
Indices: 11477906--11477956 Score: 59
Period size: 11 Copynumber: 4.6 Consensus size: 11
11477896 TAAAATATTT
11477906 AAAAATTT-AA
1 AAAAATTTAAA
11477916 AAAAATTTAAA
1 AAAAATTTAAA
* *
11477927 AAAAGTTCAAA
1 AAAAATTTAAA
*
11477938 AAAATTTTTAAA
1 AAAA-ATTTAAA
11477950 AAAAATT
1 AAAAATT
11477957 ATCCATGTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
10 8 0.24
11 17 0.50
12 9 0.26
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (11 bp):
AAAAATTTAAA
Found at i:11480528 original size:40 final size:35
Alignment explanation
Indices: 11480462--11480592 Score: 136
Period size: 35 Copynumber: 3.6 Consensus size: 35
11480452 CATGGAAAAG
11480462 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
*
11480497 TGTGATATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * *** *
11480537 TAAGAAATGTAGGTATGGCATTGCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
*
11480572 TGTAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
11480593 TTCAATGAGG
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
35 44 0.56
37 2 0.03
38 4 0.05
40 28 0.36
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:11487957 original size:40 final size:38
Alignment explanation
Indices: 11487891--11488022 Score: 150
Period size: 35 Copynumber: 3.6 Consensus size: 38
11487881 CATGGCAAAG
11487891 TGTGAAATGTAGGTATGG---TATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCATCCATACTGAGT
*
11487926 TGTGATATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATC--ATCCATACTGAGT
** * *
11487966 TAAGAAATGTAGGTATGGCATTA-C--CCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTATCATCCATACTGAGT
*
11488001 TGTAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
11488023 TCAATGAGGA
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
35 45 0.55
38 4 0.05
39 1 0.01
40 32 0.39
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (38 bp):
TGTGAAATGTAGGTATGGTATTATCATCCATACTGAGT
Found at i:11491168 original size:19 final size:19
Alignment explanation
Indices: 11491144--11491180 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
11491134 TGGTAGAAAG
11491144 AATCAGGCATGATGATTAA
1 AATCAGGCATGATGATTAA
11491163 AATCAGGCATGATGATTA
1 AATCAGGCATGATGATTA
11491181 GCAGTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.27
Consensus pattern (19 bp):
AATCAGGCATGATGATTAA
Found at i:11493117 original size:73 final size:71
Alignment explanation
Indices: 11492872--11493123 Score: 301
Period size: 71 Copynumber: 3.5 Consensus size: 71
11492862 TGATGTGACT
* * ***
11492872 TTTAGAAATCTTAGGTTCAAACCCT-GGAAGTACATAATTTAGAGAATGACAGAGTTAAATCGAT
1 TTTAGAGATATTAGGTTCAAACCCTGGGAAGTACATGGGTTAGAGAATGACAGAGTTAAATCGAT
11492936 TTCCAA
66 TTCCAA
* * * *
11492942 TTTAGAGATATTAGGTTCAGACCCTGGGAAGTTCATGGGTTAGAGTATGACTGAGTTAAATCGAT
1 TTTAGAGATATTAGGTTCAAACCCTGGGAAGTACATGGGTTAGAGAATGACAGAGTTAAATCGAT
11493007 TTCCAA
66 TTCCAA
* * * *
11493013 TTTAGAGATATTAGGTTTAGACCCTGGGAAGTTCATGGGTTAGAGGATGACAGAGAGTTAAA-CT
1 TTTAGAGATATTAGGTTCAAACCCTGGGAAGTACATGGGTTAGAGAATGAC--AGAGTTAAATC-
*
11493077 GATTTCCAG
63 GATTTCCAA
* * * *
11493086 TATAGAGATCTTAGGTTCAAACCTTGTGAAGTACATGG
1 TTTAGAGATATTAGGTTCAAACCCTGGGAAGTACATGG
11493124 ATCAGGAATG
Statistics
Matches: 158, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
70 22 0.14
71 88 0.56
72 1 0.01
73 47 0.30
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.31
Consensus pattern (71 bp):
TTTAGAGATATTAGGTTCAAACCCTGGGAAGTACATGGGTTAGAGAATGACAGAGTTAAATCGAT
TTCCAA
Found at i:11498841 original size:24 final size:24
Alignment explanation
Indices: 11498793--11498843 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
11498783 AATTAAAGCC
* *
11498793 ATAAATTTTTTAAAAAATATAAAA
1 ATAAATTTATTAAAAAACATAAAA
*
11498817 ATAAATTTATTAAAAACCATTAAAA
1 ATAAATTTATTAAAAAACA-TAAAA
11498842 AT
1 AT
11498844 TTATAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (24 bp):
ATAAATTTATTAAAAAACATAAAA
Found at i:11498851 original size:35 final size:34
Alignment explanation
Indices: 11498802--11498867 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 34
11498792 CATAAATTTT
11498802 TTAAAAAATAT-AAAAATAAATTTATTAAAAACCA
1 TTAAAAAATATAAAAAAT-AATTTATTAAAAACCA
*
11498836 TTAAAAATTTATAAAAAATAATTTATTAAAAA
1 TTAAAAA-ATATAAAAAATAATTTATTAAAAA
11498868 ATTTATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 7 0.24
35 16 0.55
36 6 0.21
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (34 bp):
TTAAAAAATATAAAAAATAATTTATTAAAAACCA
Found at i:11498860 original size:14 final size:15
Alignment explanation
Indices: 11498841--11498869 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11498831 AACCATTAAA
11498841 AATTTA-TAAAAAAT
1 AATTTATTAAAAAAT
11498855 AATTTATTAAAAAAT
1 AATTTATTAAAAAAT
11498870 TTATTTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AATTTATTAAAAAAT
Found at i:11499062 original size:2 final size:2
Alignment explanation
Indices: 11499055--11499094 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
11499045 CTTATTTTTA
*
11499055 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11499095 TTAGAATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11503824 original size:107 final size:107
Alignment explanation
Indices: 11503705--11503907 Score: 390
Period size: 107 Copynumber: 1.9 Consensus size: 107
11503695 TTCATTTCTG
11503705 ACTTTAGTTTTTTTTTTAT-AAAATATTATAAAAGTTTTTGTATTATAAATCGGATTACATTTTA
1 ACTTTAGTTTTTTTTTTATAAAAATATTATAAAAGTTTTTGT-TTATAAATCGGATTACATTTTA
11503769 TTATTTCTATTCAAAAATAGATAAATTAGTCATTATATATTAA
65 TTATTTCTATTCAAAAATAGATAAATTAGTCATTATATATTAA
11503812 ACTTTAGTTTTTTTTTTATAAAAATATTATAAAAGTTTTTGTTTATAAATCGGATTACATTTTAT
1 ACTTTAGTTTTTTTTTTATAAAAATATTATAAAAGTTTTTGTTTATAAATCGGATTACATTTTAT
11503877 TATTTCTATTCAAAAATAGATAAATTAGTCA
66 TATTTCTATTCAAAAATAGATAAATTAGTCA
11503908 GTAAATTGAT
Statistics
Matches: 95, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
107 73 0.77
108 22 0.23
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.49
Consensus pattern (107 bp):
ACTTTAGTTTTTTTTTTATAAAAATATTATAAAAGTTTTTGTTTATAAATCGGATTACATTTTAT
TATTTCTATTCAAAAATAGATAAATTAGTCATTATATATTAA
Found at i:11515886 original size:23 final size:23
Alignment explanation
Indices: 11515856--11515903 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
11515846 GTACAATGAA
11515856 TACATTTTCACTTAAACCTAAAC
1 TACATTTTCACTTAAACCTAAAC
*
11515879 TACATTTTCACTTTAACCTAAAC
1 TACATTTTCACTTAAACCTAAAC
11515902 TA
1 TA
11515904 TACCTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38
Consensus pattern (23 bp):
TACATTTTCACTTAAACCTAAAC
Found at i:11522570 original size:22 final size:22
Alignment explanation
Indices: 11522535--11522581 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
11522525 CAATTTTGGC
* * *
11522535 CCCTTTATAGTAAACTCCAAAA
1 CCCTTCATACTAAACCCCAAAA
11522557 CCCTTCATACTAAACCCCAAAA
1 CCCTTCATACTAAACCCCAAAA
11522579 CCC
1 CCC
11522582 AACACATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.38, G:0.02, T:0.21
Consensus pattern (22 bp):
CCCTTCATACTAAACCCCAAAA
Found at i:11522600 original size:20 final size:20
Alignment explanation
Indices: 11522575--11522613 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
11522565 ACTAAACCCC
*
11522575 AAAACCCAACACATTAAACT
1 AAAACCCAACAAATTAAACT
11522595 AAAACCCAACAAATTAAAC
1 AAAACCCAACAAATTAAAC
11522614 CCAAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.28, G:0.00, T:0.13
Consensus pattern (20 bp):
AAAACCCAACAAATTAAACT
Found at i:11524448 original size:22 final size:23
Alignment explanation
Indices: 11524398--11524448 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
11524388 TATATATTTT
11524398 TATTACCATTATTTTTCATTAACA
1 TATTACCATTATTTTT-ATTAACA
* *
11524422 TATTACTATTATTTTT-TTACCA
1 TATTACCATTATTTTTATTAACA
11524444 TATTA
1 TATTA
11524449 TTTTATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.40
24 15 0.60
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTACCATTATTTTTATTAACA
Found at i:11524667 original size:21 final size:21
Alignment explanation
Indices: 11524628--11524667 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
11524618 ATATATGTCG
* *
11524628 TATATGTTTATGTATATATCA
1 TATATGTTTATATACATATCA
*
11524649 TATATGTTTTTATACATAT
1 TATATGTTTATATACATAT
11524668 TATGTATCTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (21 bp):
TATATGTTTATATACATATCA
Found at i:11525045 original size:32 final size:32
Alignment explanation
Indices: 11525009--11525072 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
11524999 ACACCTTTTC
11525009 ATTATTATTATTATTAGTATATAAATATATTT
1 ATTATTATTATTATTAGTATATAAATATATTT
11525041 ATTATTATTATTATTAGTATATAAATATATTT
1 ATTATTATTATTATTAGTATATAAATATATTT
11525073 TCTATGTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (32 bp):
ATTATTATTATTATTAGTATATAAATATATTT
Found at i:11525142 original size:15 final size:15
Alignment explanation
Indices: 11525124--11525157 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
11525114 TTTATACTAT
11525124 GTATATATATATTTA
1 GTATATATATATTTA
*
11525139 GTATGTATATATTTA
1 GTATATATATATTTA
11525154 GTAT
1 GTAT
11525158 TATTATGCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
GTATATATATATTTA
Found at i:11526224 original size:48 final size:48
Alignment explanation
Indices: 11526169--11526454 Score: 265
Period size: 48 Copynumber: 6.0 Consensus size: 48
11526159 AGGCTGAATT
* * * * **
11526169 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGTTCACATGTTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAG
* ** * * * * *
11526217 GCCGATGCCATATCCCAGGTATGGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAG
* * *
11526265 GCCGATGCCATGTCCCAGACATGG-CTTTACACTAGCACACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTC-TTACACTGGCTCACATATCAAG
* *
11526313 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGTTCTCACAACATC-A-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCAC-ATATCAAG
* * * * **
11526362 -CCGATGCCATGTTCCAAACATGGTCTTACACTGGCCCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAG
* *
11526409 GCCGCTGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCA
11526455 CCCAAATGGC
Statistics
Matches: 193, Mismatches: 37, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
45 4 0.02
46 3 0.02
47 1 0.01
48 175 0.91
49 1 0.01
50 5 0.03
51 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAG
Found at i:11526442 original size:96 final size:95
Alignment explanation
Indices: 11526170--11526443 Score: 295
Period size: 96 Copynumber: 2.9 Consensus size: 95
11526160 GGCTGAATTG
** * * * *
11526170 CCGATGCCATGTTCCAAACATGGTCTTACACTGGTTCACATGTTGAGGCCGATGCCATATCCCAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATCGTGGCCGATGCCATGTCCCAG
** * * *
11526235 GTATGGTCTTACACTAGCTCTCGTCTCAATG
66 ACATGGTCTTACACT-GGTCTCGTCACAATA
* * * * *
11526266 CCGATGCCATGTCCCAGACATGG-CTTTACACTAGCACACATATCAAT-GCCGATGCCATGTCCT
1 CCGATGCCATGTTCCAAACATGGTC-TTACACTGGCACACATATC-GTGGCCGATGCCATGTCCC
11526329 AGACATGGTCTTACACTGGT-TC-TCACAACATCA
64 AGACATGGTCTTACACTGGTCTCGTCAC-A-AT-A
* * *
11526362 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCCCTCATATCGTGGCCGCTGCCATGTCCCAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATCGTGGCCGATGCCATGTCCCAG
11526427 ACATGGTCTTACACTGG
66 ACATGGTCTTACACTGG
11526444 CACACATATC
Statistics
Matches: 147, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
93 3 0.02
94 3 0.02
95 6 0.04
96 134 0.91
97 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (95 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATCGTGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGGTCTCGTCACAATA
Found at i:11538277 original size:131 final size:131
Alignment explanation
Indices: 11537516--11538245 Score: 1004
Period size: 131 Copynumber: 5.6 Consensus size: 131
11537506 TGGGAAATTG
* * ** * * *
11537516 CAACCCAGCACGATAGGGTACT-ATTTCCCGAATTGCCAAACATCGAATATCGCATTCGTTTT-A
1 CAACCCAGCACGATAGGGCA-TGA-TTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGA
** *** * * * *
11537579 AAGGGTTTTTAGA-AAACGTGAGTGAAATTTTAAAAGAATCTTCGATTGTTTTGAAAAAACGAGA
64 AA-GGTTTTTA-ATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGA
11537643 AATCA
127 AATCA
* * * * *
11537648 CAACCCAACACGTTAGGGCATGATTCTCGAATTATCAAACACCGAGTATTGTCTTCGTTTTGGAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGAAA
* *
11537713 GGTTTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCAGTTGTTTTGAACAAACGAGAAATC
66 GGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATC
11537778 A
131 A
* * *
11537779 CAACCCAGCACGATTGGGCATGATTCTCAAATTATCAAACATCGAGTATTGCCTTCATTTTGGAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTT-GAA
* *
11537844 A-GTTTTTAATAAACACGAATGAAAACCTAAAGGAATATTTGGTTGTTTTGAACAAACGAGAAAT
65 AGGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAAT
11537908 CA
130 CA
* *
11537910 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATTGAGTATTGCCTTTGTTTTGGAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTT-GAA
* * * *
11537975 A-GTTTTTAATAAACACGAATGAAAACCTAAAGTAATATTCAGTTGTTTTGAATAAACGAGAAAT
65 AGGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAAT
11538039 CA
130 CA
* * *
11538041 CAACCCATCACGATAGGGCATGATTCTCGAATTATCAAACACCGAGTATTGCCTTCGTTTTGGAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGAAA
*
11538106 GGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAGTC
66 GGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATC
11538171 A
131 A
*
11538172 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCAAGTATTGCCTTCGTTTT-AAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGAAA
11538236 GGATTTTTAA
66 GG-TTTTTAA
11538246 AAGGCATGAG
Statistics
Matches: 536, Mismatches: 56, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
130 8 0.01
131 505 0.94
132 23 0.04
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (131 bp):
CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGAAA
GGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATC
A
Found at i:11538309 original size:262 final size:262
Alignment explanation
Indices: 11537516--11538348 Score: 1011
Period size: 262 Copynumber: 3.2 Consensus size: 262
11537506 TGGGAAATTG
* * ** * * * *
11537516 CAACCCAGCACGATAGGGTACT-ATTTCCCGAATTGCCAAACATCGAATATCGCATTCGTTTT-A
1 CAACCCAGCACGATAGGGCA-TGA-TTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGG
** *** * * * *
11537579 AAGGGTTTTTAGA-AAACGTGAGTGAAATTTTAAAAGAATCTTCGATTGTTTTGAAAAAACGAGA
64 AA-GGTTTTTA-ATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGA
* * * *
11537643 AATCACAACCCAACACGTTAGGGCATGATTCTCGAATTATCAAACACCGAGTATTGTCTTCGTTT
127 AATCACAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTT
* *
11537708 TGGAAGGTTTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCAGTTGTTTTGAACAAACGAG
192 TGAAAGGTTTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCAGTTATTTTGAACAAACGAG
11537773 AAATCA
257 AAATCA
* * *
11537779 CAACCCAGCACGATTGGGCATGATTCTCAAATTATCAAACATCGAGTATTGCCTTCATTTTGGAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGAA
* * *
11537844 AGTTTTTAATAAACACGAATGAAAACCTAAAGGAATATTTGGTTGTTTTGAACAAACGAGAAATC
66 GGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATC
* *
11537909 ACAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATTGAGTATTGCCTTTGTTTTGGA
131 ACAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTT-GA
* * * * *
11537974 AA-GTTTTTAATAAACACGAATGAAAACCTAAAGTAATATTCAGTTGTTTTGAATAAACGAGAAA
195 AAGGTTTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCAGTTATTTTGAACAAACGAGAAA
11538038 TCA
260 TCA
* *
11538041 CAACCCATCACGATAGGGCATGATTCTCGAATTATCAAACACCGAGTATTGCCTTCGTTTTGGAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGAA
*
11538106 GGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAGTC
66 GGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATC
*
11538171 ACAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCAAGTATTGCCTTCGTTTT-AA
131 ACAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGAA
* * ** * *
11538235 AGGATTTTTAA-AAGGCATGAGTG-GAATTTTAAGGAGATATTC-GATTATTTTGAGCAAACGCA
196 AGG-TTTTTAATAA-ACATGAGTGAAAACCTAAAGGA-ATATTCAG-TTATTTTGAACAAACG-A
**
11538297 -AAATTG
256 GAAATCA
* * * * *
11538303 CAACCCAACACGTTAGGGCACT-ATTTCGCGAATTGTCAAATATCGA
1 CAACCCAGCACGATAGGGCA-TGA-TTCTCGAATTATCAAACATCGA
11538349 ATCTCGTCTT
Statistics
Matches: 493, Mismatches: 65, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
260 3 0.01
261 12 0.02
262 434 0.88
263 44 0.09
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (262 bp):
CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGAA
GGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATC
ACAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGAA
AGGTTTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCAGTTATTTTGAACAAACGAGAAAT
CA
Found at i:11541321 original size:44 final size:44
Alignment explanation
Indices: 11541259--11541598 Score: 439
Period size: 44 Copynumber: 7.7 Consensus size: 44
11541249 ATTTTTTATA
* *
11541259 TGCTC-CCTGCCAATACAGAGATGCCAAATCTGCTGTCTTCGATC
1 TGCTCTCC-GCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
* ** * * *
11541303 TACTCTCCGCCGCTACAGAGATGTCAAATTTGCTATCTTCGATC
1 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
* * * *
11541347 TGCCCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATC
1 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
* ** * * *
11541391 TGTTCTCCGCCAATATGGAGACGCCAAATCTGTTATCTTCAATT
1 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
*
11541435 TGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
1 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
* * * *
11541479 TGCCCTCTGACAATACAGAGACGCCAAATCTTCTATCTTCGATC
1 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
11541523 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
1 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
* *
11541567 TACTCTCCGCCAATACAAAGACGCCAAATCTG
1 TGCTCTCCGCCAATACAGAGACGCCAAATCTG
11541599 TGGGATTCGT
Statistics
Matches: 255, Mismatches: 40, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 253 0.99
45 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (44 bp):
TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATC
Found at i:11541452 original size:132 final size:132
Alignment explanation
Indices: 11541259--11541598 Score: 493
Period size: 132 Copynumber: 2.6 Consensus size: 132
11541249 ATTTTTTATA
* * * **
11541259 TGCTC-CCTGCCAATACAGAGATGCCAAATCTGCTGTCTTCGATCTACTCTCCGCCGCTACAGAG
1 TGCTCTCC-GCCAATACAGAGACGCCAAATCTGCTATCTTCAATCTACTCTCCGCCAATACAGAG
* * * *
11541323 ATGTCAAATTTGCTATCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
65 ACGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
11541388 ATC
130 ATC
* ** * * * *
11541391 TGTTCTCCGCCAATATGGAGACGCCAAATCTGTTATCTTCAATTTGCTCTCTGCCAATACAGAGA
1 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCAATCTACTCTCCGCCAATACAGAGA
*
11541456 CGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGCCAAATCTTCTATCTTCGA
66 CGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
11541521 TC
131 TC
* *
11541523 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCCGCCAATACAAAGA
1 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCAATCTACTCTCCGCCAATACAGAGA
11541588 CGCCAAATCTG
66 CGCCAAATCTG
11541599 TGGGATTCGT
Statistics
Matches: 181, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
132 179 0.99
133 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (132 bp):
TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCAATCTACTCTCCGCCAATACAGAGA
CGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
TC
Found at i:11549599 original size:20 final size:20
Alignment explanation
Indices: 11549562--11549599 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11549552 TGGGATAACT
*
11549562 GACTCATCATTTCCCTCTGG
1 GACTCATCATTTCACTCTGG
11549582 GACTCCATCATTT-ACTCT
1 GACT-CATCATTTCACTCT
11549600 TTCATCTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (20 bp):
GACTCATCATTTCACTCTGG
Found at i:11552989 original size:131 final size:131
Alignment explanation
Indices: 11552759--11553488 Score: 1015
Period size: 131 Copynumber: 5.6 Consensus size: 131
11552749 TGGGAAATTG
* ** * * *
11552759 CAACCCAGCACGATAGGGTACT-ATTTCTCGAATTGCCAAACATCGAATATCGCCTTCGTTTT-A
1 CAACCCAGCACGATAGGGCA-TGA-TTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGG
** * ** * * * * *
11552822 AAGGATTTTTAGA-AAACGTGAGTG-AAATTTCGAAGGAATCTTCGATTGTTTTGAAAAAATGAG
64 AAGG-TTTTTA-ATAAACACGAATGAAAACCT-AAAGGAATATTCGGTTGTTTTGAACAAACGAG
11552885 AAATCA
126 AAATCA
* * * * * *
11552891 CAACCCAACAC-ATTAGGGCACGATTCCCGAATTATCAAACACCGAGTATTGTCTTTGTTTTGGA
1 CAACCCAGCACGA-TAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGA
*
11552955 AGGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAAT
65 AGGTTTTTAATAAACACGAATGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAAT
11553020 CA
130 CA
11553022 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAATA-ATCGAGTATTGCCTTCGTTTTGGA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAA-ACATCGAGTATTGCCTTCGTTTTGGA
* * *
11553086 AAGTTTTTAATAAACACGAATGAAAACCTAAAGGATTATTCGGTTATTTTGAACAAACGAGAAAT
65 AGGTTTTTAATAAACACGAATGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAAT
11553151 CA
130 CA
*
11553153 CAAGCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGAA
* * *
11553218 AGTTTTTAATAAACACGAATGAAAACCTAAAAGAATATTCAGTTGTTTTGAACAAACGAGAAATC
66 GGTTTTTAATAAACACGAATGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATC
11553283 A
131 A
*
11553284 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACACCGAGTATTGCCTTCGTTTTGGAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGAA
* * *
11553349 GGTTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTTGGTTGTTTTGAACAAACGAGAAGTC
66 GGTTTTTAATAAACACGAATGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATC
11553414 A
131 A
* *
11553415 CAACCTAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTT-AAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGAA
11553479 GGATTTTTAA
66 GG-TTTTTAA
11553489 AAGGCATGAG
Statistics
Matches: 542, Mismatches: 47, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
130 6 0.01
131 509 0.94
132 27 0.05
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (131 bp):
CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGAA
GGTTTTTAATAAACACGAATGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATC
A
Found at i:11553528 original size:393 final size:393
Alignment explanation
Indices: 11552723--11553611 Score: 1127
Period size: 393 Copynumber: 2.3 Consensus size: 393
11552713 GAAATCCCGG
** * ** *
11552723 AGAGATATTCGATTATTTTGAGCAAGTGGGAAATTGCAACCCAGCACGATAGGGTACTATTTCTC
1 AGAGATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTTCTC
* ** * **
11552788 GAATTGCCAAACATCGAATATCGCCTTCGTTTTAAAGGATTTTTAGAAAACGTGAGTGAAATTTC
66 GAATTACCAAACATCGAATATCGCCTTCGTTTTAAAGGATTTTTAGAAAACACGAATGAAACCTC
* * * *
11552853 GAAGGAATCTTCGATTGTTTTGAAAAAATGAGAAATCACAACCCAACACATTAGGGCACGATTCC
131 AAAAGAATATTCGATTGTTTTGAAAAAACGAGAAATCACAACCCAACACATTAGGGCACGATTCC
* *
11552918 CGAATTATCAAACACCGAGTATTGTCTTTGTTTTGGAAGGTTTTTAATAAACACGAGTGAAAACC
196 CGAATTATCAAACACCGAGTATTGCCTTCGTTTTGGAAGGTTTTTAATAAACACGAGTGAAAACC
11552983 TAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTC
261 TAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTC
11553048 TCGAATTATCAATAATCGAGTATTGCCTTCGTTTTGGAAAGTTTTTAATAAACACGAATGAAAAC
326 TCGAATTATCAATAATCGAGTATTGCCTTCGTTTT-GAAAGTTTTTAATAAACACGAATGAAAAC
11553113 CTAA
390 CTAA
* * *
11553117 AG-GATTATTCGGTTATTTTGAACAAACGAGAAATCACAAGCCAGCACGATAGGGCA-TGA-TTC
1 AGAGA-TATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCACT-ATTTC
* * *
11553179 TCGAATTATCAAACATCGAGTATTGCCTTCGTTTTGGAAA-G-TTTTTA-ATAAACACGAATGAA
64 TCGAATTACCAAACATCGAATATCGCCTTCGTTTT--AAAGGATTTTTAGA-AAACACGAATG-A
* *
11553241 AACCT-AAAAGAATATTC-AGTTGTTTTGAACAAACGAGAAATCACAACCCAGCACGA-TAGGGC
125 AACCTCAAAAGAATATTCGA-TTGTTTTGAAAAAACGAGAAATCACAACCCAACAC-ATTAGGGC
* *
11553303 ATGATTCTCGAATTATCAAACACCGAGTATTGCCTTCGTTTTGGAAGGTTTTTAATAAACACGAG
188 ACGATTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTTGGAAGGTTTTTAATAAACACGAG
* * *
11553368 TGAAAACCTAAAGGAATATTTGGTTGTTTTGAACAAACGAGAAGTCACAACCTAGCACGATAGGG
253 TGAAAACCTAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGG
*
11553433 CATGATTCTCGAATTATCAA-ACATCGAGTATTGCCTTCGTTTT-AAAGGATTTTTAA-AAGGCA
318 CATGATTCTCGAATTATCAATA-ATCGAGTATTGCCTTCGTTTTGAAA-G-TTTTTAATAA-ACA
* * * ***
11553495 TGAGTGGAATTTTAA
379 CGAATGAAAACCTAA
* ** * * *
11553510 AGAGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTTCGC
1 AGAGATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTTCTC
* * * ** *
11553575 GAATTGCCAAATATCGAATCTCGTGTTTGTTTTAAAG
66 GAATTACCAAACATCGAATATCGCCTTCGTTTTAAAG
11553612 AATTCTTAAA
Statistics
Matches: 423, Mismatches: 56, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
391 3 0.01
392 9 0.02
393 326 0.77
394 82 0.19
395 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (393 bp):
AGAGATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTTCTC
GAATTACCAAACATCGAATATCGCCTTCGTTTTAAAGGATTTTTAGAAAACACGAATGAAACCTC
AAAAGAATATTCGATTGTTTTGAAAAAACGAGAAATCACAACCCAACACATTAGGGCACGATTCC
CGAATTATCAAACACCGAGTATTGCCTTCGTTTTGGAAGGTTTTTAATAAACACGAGTGAAAACC
TAAAGGAATATTCGGTTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTC
TCGAATTATCAATAATCGAGTATTGCCTTCGTTTTGAAAGTTTTTAATAAACACGAATGAAAACC
TAA
Found at i:11553529 original size:131 final size:131
Alignment explanation
Indices: 11552727--11553565 Score: 991
Period size: 131 Copynumber: 6.4 Consensus size: 131
11552717 TCCCGGAGAG
* * ** * ** *
11552727 ATATTCGATTATTTTGAGCAAGTGGGAAATTGCAACCCAGCACGATAGGGTACT-ATTTCTCGAA
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCA-TGA-TTCTCGAA
** * * ** **
11552791 TTGCCAAACATCGAATATCGCCTTCGTTTT-AAAGGATTTTTAGA-AAACGTGAGTG-AAATTTC
64 TTATCAAACATCGAGTATTGCCTTCGTTTTGAAAGG-TTTTTA-ATAAACACGAGTGAAAACCT-
*
11552853 GAAGGA
126 AAAGGA
* * * * * *
11552859 ATCTTCGATTGTTTTGAAAAAATGAGAAATCACAACCCAACAC-ATTAGGGCACGATTCCCGAAT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGA-TAGGGCATGATTCTCGAAT
* * * *
11552923 TATCAAACACCGAGTATTGTCTTTGTTTTGGAAGGTTTTTAATAAACACGAGTGAAAACCTAAAG
65 TATCAAACATCGAGTATTGCCTTCGTTTTGAAAGGTTTTTAATAAACACGAGTGAAAACCTAAAG
11552988 GA
130 GA
*
11552990 ATATTCGGTTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAATT
*
11553055 ATCAATA-ATCGAGTATTGCCTTCGTTTTGGAAA-GTTTTTAATAAACACGAATGAAAACCTAAA
66 ATCAA-ACATCGAGTATTGCCTTCGTTTT-GAAAGGTTTTTAATAAACACGAGTGAAAACCTAAA
11553118 GGA
129 GGA
* * * *
11553121 TTATTCGGTTATTTTGAACAAACGAGAAATCACAAGCCAGCACGATAGGGCATGATTCTCGAATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAATT
* *
11553186 ATCAAACATCGAGTATTGCCTTCGTTTTGGAAA-GTTTTTAATAAACACGAATGAAAACCTAAAA
66 ATCAAACATCGAGTATTGCCTTCGTTTT-GAAAGGTTTTTAATAAACACGAGTGAAAACCTAAAG
11553250 GA
130 GA
11553252 ATATTC-AGTTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAAT
1 ATATTCGA-TTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAAT
* *
11553316 TATCAAACACCGAGTATTGCCTTCGTTTTGGAAGGTTTTTAATAAACACGAGTGAAAACCTAAAG
65 TATCAAACATCGAGTATTGCCTTCGTTTTGAAAGGTTTTTAATAAACACGAGTGAAAACCTAAAG
11553381 GA
130 GA
* * * *
11553383 ATATTTGGTTGTTTTGAACAAACGAGAAGTCACAACCTAGCACGATAGGGCATGATTCTCGAATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAATT
* * * ***
11553448 ATCAAACATCGAGTATTGCCTTCGTTTT-AAAGGATTTTTAA-AAGGCATGAGTGGAATTTTAAA
66 ATCAAACATCGAGTATTGCCTTCGTTTTGAAAGG-TTTTTAATAA-ACACGAGTGAAAACCTAAA
11553511 -GA
129 GGA
* * * ** * *
11553513 GATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCA
1 -ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCA
11553566 CTATTTCGCG
Statistics
Matches: 620, Mismatches: 72, Indels: 31
0.86 0.10 0.04
Matches are distributed among these distances:
130 13 0.02
131 553 0.89
132 54 0.09
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (131 bp):
ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAATT
ATCAAACATCGAGTATTGCCTTCGTTTTGAAAGGTTTTTAATAAACACGAGTGAAAACCTAAAGG
A
Found at i:11554520 original size:2 final size:2
Alignment explanation
Indices: 11554513--11554559 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
11554503 AATAATATCA
* *
11554513 AT AT AT AT AT AT AT AT GT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11554555 AT AT A
1 AT AT A
11554560 ACTTTTGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11556099 original size:27 final size:27
Alignment explanation
Indices: 11556069--11556249 Score: 139
Period size: 27 Copynumber: 6.7 Consensus size: 27
11556059 CAAATTGTAA
* *
11556069 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTACAG
***
11556096 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAATTACCCTCGATTTACAG
** * *
11556123 AATTACC-GTTTACCCTTGATTTATAG
1 AATTACCAAATTACCCTCGATTTACAG
* ** *
11556149 AATTACTATTTTACCCTTGATTTACAG
1 AATTACCAAATTACCCTCGATTTACAG
**** *
11556176 AATTACTGTTTTACCCTCGATTTACAA
1 AATTACCAAATTACCCTCGATTTACAG
* * * * *
11556203 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAATTACCCTCGATTTACAG
*
11556230 AATTACCAAAATACCCTCGA
1 AATTACCAAATTACCCTCGA
11556250 GCAATAAAAT
Statistics
Matches: 130, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 22 0.17
27 108 0.83
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (27 bp):
AATTACCAAATTACCCTCGATTTACAG
Found at i:11556151 original size:53 final size:54
Alignment explanation
Indices: 11556080--11556208 Score: 188
Period size: 53 Copynumber: 2.4 Consensus size: 54
11556070 ATTACCAAAG
*
11556080 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCG-TT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
11556133 TACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
11556187 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
11556209 TAAAATACCC
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 46 0.69
54 21 0.31
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:11556245 original size:54 final size:54
Alignment explanation
Indices: 11556067--11556505 Score: 215
Period size: 54 Copynumber: 8.1 Consensus size: 54
11556057 CTCAAATTGT
* * * **** *
11556067 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTAC
* *** * * * * ***
11556121 AGAATTACC-GTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTAC
* ***** ** * *
11556174 AGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTAC
**** * * **
11556228 AAAATTACCAAAATACCCTCGAGCAATAAAATTACCAAAATACCC-TAATCTGT
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTAC
* * * * * * * **
11556281 AAAATTGCTAAAATATCCTTGGTTTGTAAAATTACCGAAATA-CCTTCAATTTGT
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTT-GATTTAC
* * * **
11556335 AAAATTCCCAAAATATCCCTAG-TTTGTAAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATA-CCCTCGATTTGTAAAATTACCAAAATACC-CTTGATTTAC
* * * *
11556389 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTAC
* * * *** * *
11556443 AAAGTTA-CAGAAATACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTAC
1 AAAATTACCA-AAATACCCTCGA-TTTGT-AAAATTACCAAAATACCCTTGATTTAC
11556499 AAAATTA
1 AAAATTA
11556506 TTGAAATACC
Statistics
Matches: 302, Mismatches: 72, Indels: 20
0.77 0.18 0.05
Matches are distributed among these distances:
52 2 0.01
53 87 0.29
54 175 0.58
55 10 0.03
56 28 0.09
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTAC
Found at i:11556272 original size:81 final size:81
Alignment explanation
Indices: 11556187--11556463 Score: 285
Period size: 81 Copynumber: 3.4 Consensus size: 81
11556177 ATTACTGTTT
** * * **
11556187 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGAGC
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATT
**
11556252 AATAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* * ** * * *
11556268 TACCCT-AATCTGTAAAATTGCTAAAATATCCTTGGTTTGTAAAATTACCGAAATACCTTCAATT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATT
*
11556332 TGTAAAATTCCCAAAA
66 TGTAAAATTACCAAAA
* ** * *
11556348 TATCCCTAG-TTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAATACCCTCAA
1 TA-CCCTCGATTTACAAAATTACTAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTCAA
11556411 TTTGTAAAATTACCAAAA
64 TTTGTAAAATTACCAAAA
*
11556429 TACCC-CTGATTTACAAAGTTAC-AGAAATACCCTTG
1 TACCCTC-GATTTACAAAATTACTA-AAATACCCTTG
11556464 ACTTTCTAAA
Statistics
Matches: 161, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
80 66 0.41
81 94 0.58
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATT
TGTAAAATTACCAAAA
Found at i:11556312 original size:27 final size:26
Alignment explanation
Indices: 11556201--11556433 Score: 198
Period size: 27 Copynumber: 8.7 Consensus size: 26
11556191 CTCGATTTAC
* * **
11556201 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCC-TAGTTTGT
***
11556228 AAAATTACCAAAATACCCTCGAG-CAAT
1 AAAATTACCAAAATACCCT--AGTTTGT
* *
11556255 AAAATTACCAAAATACCCTAATCTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * * *
11556281 AAAATTGCTAAAATATCCTTGGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
* * *
11556308 AAAATTACCGAAATACCTTCAATTTGT
1 AAAATTACCAAAATACCCT-AGTTTGT
*
11556335 AAAATTCCCAAAATATCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
*
11556362 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACC-CTAGTTTGT
* * *
11556389 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AGTTTGT
11556416 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
11556434 CTGATTTACA
Statistics
Matches: 167, Mismatches: 31, Indels: 16
0.78 0.14 0.07
Matches are distributed among these distances:
25 1 0.01
26 24 0.14
27 138 0.83
28 4 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:11556506 original size:27 final size:27
Alignment explanation
Indices: 11556472--11556523 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
11556462 TGACTTTCTA
11556472 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
* *
11556499 AAAATTATTGAAATACCCTTGGTTT
1 AAAATTATGGAAATACCATTGGTTT
11556524 GTAGATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:11556664 original size:27 final size:27
Alignment explanation
Indices: 11556564--11556664 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 27
11556554 AACTAAAATA
*
11556564 CCCCTATTA-GGTAAAAAGACCGTAAAG
1 CCCCTA-TAGGGTAAAATGACCGTAAAG
* *
11556591 CCCCTGTAGGGTAAAGTGACCGTAAAG
1 CCCCTATAGGGTAAAATGACCGTAAAG
*
11556618 CCCCTGA-AGGGTAAAGTGACCGTAATA-
1 CCCCT-ATAGGGTAAAATGACCGTAA-AG
*
11556645 CCCCTATATGGTAAAATGAC
1 CCCCTATAGGGTAAAATGAC
11556665 GAATATGCCC
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 3 0.05
27 60 0.94
28 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CCCCTATAGGGTAAAATGACCGTAAAG
Found at i:11557529 original size:52 final size:51
Alignment explanation
Indices: 11557467--11557589 Score: 221
Period size: 52 Copynumber: 2.4 Consensus size: 51
11557457 GAGGAAGTGC
11557467 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATACCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TACCCCAGTTTACCG
*
11557519 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTACCCCAGTTTACCG
11557570 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
11557590 ATTAAAGAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
50 10 0.14
51 24 0.34
52 36 0.51
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTACCCCAGTTTACCG
Found at i:11557564 original size:25 final size:26
Alignment explanation
Indices: 11557467--11557589 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
11557457 GAGGAAGTGC
**
11557467 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
11557493 AAAAGGGCTTATACCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
11557519 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
11557545 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
11557570 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
11557590 ATTAAAGAGG
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 33 0.37
26 56 0.63
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:11557793 original size:42 final size:42
Alignment explanation
Indices: 11557734--11557825 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
11557724 TAGTCTCCCC
* ** *
11557734 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
11557776 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
11557818 AAATGGGC
1 AAATGGGC
11557826 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:11557901 original size:32 final size:32
Alignment explanation
Indices: 11557849--11557914 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
11557839 CGTTTACAGT
11557849 AAAGGCTTCAGCCCAATGATATGATTTATGAA
1 AAAGGCTTCAGCCCAATGATATGATTTATGAA
* * *
11557881 AAAGGCTTTAGCTCAGTGATATGATTTATGAA
1 AAAGGCTTCAGCCCAATGATATGATTTATGAA
11557913 AA
1 AA
11557915 GCCTTCGGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (32 bp):
AAAGGCTTCAGCCCAATGATATGATTTATGAA
Found at i:11560184 original size:48 final size:47
Alignment explanation
Indices: 11559953--11560253 Score: 208
Period size: 48 Copynumber: 6.4 Consensus size: 47
11559943 AGGCCTTACA
* ** * * * **
11559953 CCAGACATGGTCTTACATTAGCTTTCGTCTCAATGCCGATAACATGTC
1 CCAGACATGGTCTTACACTAGCTCACAT-ACATTGCCGATGCCATGTC
* * * *
11560001 CTAGATATGGTCTTATACTAGCTCTCATA-ATGTGGCCGATGCCATGTC
1 CCAGACATGGTCTTACACTAGCTCACATACAT-T-GCCGATGCCATGTC
* * *
11560049 CCAGACATGGTCTTACACTAGCACACATA-ATGTGGTCTATGCCATGTC
1 CCAGACATGGTCTTACACTAGCTCACATACAT-T-GCCGATGCCATGTC
* * * *
11560097 CCAGACATGGT-TATACACTAGCGCACATATCAATACCGATGCCATATC
1 CCAGACATGGTCT-TACACTAGCTCACATA-CATTGCCGATGCCATGTC
11560145 CCAGACATGGTCTTACACTAGTTCTCACA-ACATTGCCGATGCCAT-T-
1 CCAGACATGGTCTTACACTAG--CTCACATACATTGCCGATGCCATGTC
** * * * * *
11560191 ----TTATGGTCTTACACTGGCCCTCATATCGTGGCCGATGCCATGTC
1 CCAGACATGGTCTTACACTAGCTCACATA-CATTGCCGATGCCATGTC
11560235 CCAGACATGGTCTTACACT
1 CCAGACATGGTCTTACACT
11560254 TGCATACAGT
Statistics
Matches: 202, Mismatches: 35, Indels: 32
0.75 0.13 0.12
Matches are distributed among these distances:
40 4 0.02
41 1 0.00
42 27 0.13
43 1 0.00
46 1 0.00
47 3 0.01
48 156 0.77
49 3 0.01
50 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
CCAGACATGGTCTTACACTAGCTCACATACATTGCCGATGCCATGTC
Found at i:11562262 original size:21 final size:21
Alignment explanation
Indices: 11562238--11562302 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
11562228 AAGTCTAGTT
*
11562238 GAAGCACATAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
*
11562259 GAAGC-C-CGAAG-GCT-AACT
1 GAAGCACAC-AAGTGCTAAACG
11562277 GAAGCACACAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
11562298 GAAGC
1 GAAGC
11562303 CCGAAGGCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 8 0.22
19 7 0.19
20 8 0.22
21 13 0.36
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAACG
Found at i:11562280 original size:39 final size:39
Alignment explanation
Indices: 11562220--11562320 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
11562210 ATCGTGATCT
* ** *
11562220 GAAGCCCGAAGTCTAGTTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
11562259 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
11562298 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
11562321 TCATCAGAGT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.37, C:0.24, G:0.27, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:11569583 original size:9 final size:9
Alignment explanation
Indices: 11569565--11569632 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
11569555 ATAAGTATAA
11569565 AATTAACCG
1 AATTAACCG
*
11569574 AATTACCCG
1 AATTAACCG
*
11569583 AATTAATCG
1 AATTAACCG
11569592 AATTAACCG
1 AATTAACCG
*
11569601 AATTACCCG
1 AATTAACCG
* *
11569610 AATTACCCA
1 AATTAACCG
11569619 AATTAACCG
1 AATTAACCG
11569628 AATTA
1 AATTA
11569633 TTTGTATAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.43, C:0.24, G:0.09, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:11569603 original size:27 final size:27
Alignment explanation
Indices: 11569564--11569632 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
11569554 AATAAGTATA
*
11569564 AAATTAACCGAATTACCCGAATTAATC
1 AAATTAACCGAATTACCCGAATTAACC
* *
11569591 GAATTAACCGAATTACCCGAATTACCC
1 AAATTAACCGAATTACCCGAATTAACC
11569618 AAATTAACCGAATTA
1 AAATTAACCGAATTA
11569633 TTTGTATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.25
Consensus pattern (27 bp):
AAATTAACCGAATTACCCGAATTAACC
Found at i:11569667 original size:5 final size:6
Alignment explanation
Indices: 11569652--11569685 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
11569642 AATTATATGT
11569652 TTTTTA TTTTTA TTTTTA GTTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTT
11569686 ATTAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:11569674 original size:13 final size:12
Alignment explanation
Indices: 11569652--11569685 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
11569642 AATTATATGT
11569652 TTTTTATTTTTA
1 TTTTTATTTTTA
11569664 TTTTTAGTTTTTA
1 TTTTTA-TTTTTA
11569677 TTTTTATTT
1 TTTTTATTT
11569686 ATTAAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (12 bp):
TTTTTATTTTTA
Done.