Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 39 of 345
Found at i:11571839 original size:40 final size:40
Alignment explanation
Indices: 11571774--11571849 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
11571764 TACGGTACCT
* * *
11571774 TATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATA
1 TATGGTGTGCAGGGATGGATAGGTCGATTATATCCCCATA
* *
11571814 TATGGTGTGCAGGGATGGGTAGGTCGATTTTATCCC
1 TATGGTGTGCAGGGATGGATAGGTCGATTATATCCC
11571850 TACATAGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.18, C:0.13, G:0.34, T:0.34
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATAGGTCGATTATATCCCCATA
Found at i:11578964 original size:42 final size:42
Alignment explanation
Indices: 11578901--11579076 Score: 185
Period size: 42 Copynumber: 4.0 Consensus size: 42
11578891 CTTCGTTTTC
** * * *
11578901 TCGATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
11578944 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
11578985 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCACATA
* * *
11579034 TCGATACCATAGCCCAACTATGGTCTTACACA-AATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
11579075 TC
1 TC
11579077 TCACTGATGC
Statistics
Matches: 115, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
41 11 0.10
42 63 0.55
43 1 0.01
45 2 0.02
46 1 0.01
48 2 0.02
49 35 0.30
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:11579044 original size:49 final size:48
Alignment explanation
Indices: 11578971--11579076 Score: 158
Period size: 49 Copynumber: 2.2 Consensus size: 48
11578961 TATGGTCTTA
* * * *
11578971 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATACCATAGCCCAACTATGGTCTTACAC-AAAT
11579021 CACATATCACATATCGATACCATAGCCCAACTATGGTCTTACACAAAT
1 CACATATCACATATCGATACCATAGCCCAACTATGGTCTTACACAAAT
11579069 CACATATC
1 CACATATC
11579077 TCACTGATGC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 11 0.21
49 35 0.67
50 6 0.12
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.27
Consensus pattern (48 bp):
CACATATCACATATCGATACCATAGCCCAACTATGGTCTTACACAAAT
Found at i:11579218 original size:31 final size:31
Alignment explanation
Indices: 11579183--11579329 Score: 233
Period size: 31 Copynumber: 4.7 Consensus size: 31
11579173 CTTGTCACTT
*
11579183 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
11579214 GTAGCC-AGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
11579245 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
11579276 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
11579307 GTAGCCAAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
11579330 GTTGTCATTT
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 1 0.01
31 105 0.99
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:11579405 original size:50 final size:50
Alignment explanation
Indices: 11579338--11579433 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
11579328 CAGTTGTCAT
*
11579338 TTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTACCACTTTCAC
1 TTGTCATTGATCAGATAAGTGTAGCCGAACCTATCACTTACCACTTTCAC
* * *
11579388 TTGTCCTTGATCAGATAAGTGTAGTCGAACCTATCACTTATCACTT
1 TTGTCATTGATCAGATAAGTGTAGCCGAACCTATCACTTACCACTT
11579434 GTTGCCATAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (50 bp):
TTGTCATTGATCAGATAAGTGTAGCCGAACCTATCACTTACCACTTTCAC
Found at i:11579700 original size:46 final size:47
Alignment explanation
Indices: 11579632--11579751 Score: 134
Period size: 47 Copynumber: 2.6 Consensus size: 47
11579622 CTCAGAAGTT
* * * * *
11579632 CGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACATATCTCAT
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* * * * *
11579678 TGATGCCATATTCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
*
11579725 CGATGACATATCCCAGATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
11579752 TACGGAAATC
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
46 25 0.42
47 35 0.58
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:11579822 original size:31 final size:31
Alignment explanation
Indices: 11579787--11579926 Score: 174
Period size: 31 Copynumber: 4.5 Consensus size: 31
11579777 CTTGTAGTCG
* *
11579787 AAGCTACCACTATTCACTAATCAGGTAGCCA
1 AAGCTACCACTTTTCACTGATCAGGTAGCCA
* * ***
11579818 AAGCTACCATTTTTCACTGATTAGGTAGTTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCA
* *
11579849 GAGCTACCACTTTTCACTGGTCAGGTAG-CA
1 AAGCTACCACTTTTCACTGATCAGGTAGCCA
*
11579879 GAAGCTACCACTTTTCACTGATCAGGTAGCCG
1 -AAGCTACCACTTTTCACTGATCAGGTAGCCA
11579911 AAGCTACCACTTTTCA
1 AAGCTACCACTTTTCA
11579927 GTTGTCATTT
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
31 90 0.99
32 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCCA
Found at i:11579877 original size:62 final size:62
Alignment explanation
Indices: 11579780--11579926 Score: 197
Period size: 62 Copynumber: 2.4 Consensus size: 62
11579770 CTTGTCACTT
* * * *
11579780 GTAGTCGAAGCTACCACTATTCACTAATCAGGTAGCCA-AAGCTACCATTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTAATCAGGTAG-CAGAAGCTACCACTTTTCACTGATCAG
** * **
11579842 GTAGTTGGAGCTACCACTTTTCACTGGTCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
11579904 GTAGCCGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
11579927 GTTGTCATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
61 2 0.03
62 72 0.97
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:11580006 original size:50 final size:51
Alignment explanation
Indices: 11579904--11580032 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
11579894 CACTGATCAG
* * * * *
11579904 GTAGCCGAAGCTACCACTTTTCAGTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCATTAATCAGATAAGT
*
11579955 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCATTAATCAGATAAGT
*
11580005 GTAGCCGAACCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
11580033 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 46 0.66
51 24 0.34
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.34
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCATTAATCAGATAAGT
Found at i:11580173 original size:597 final size:597
Alignment explanation
Indices: 11579034--11580232 Score: 2191
Period size: 597 Copynumber: 2.0 Consensus size: 597
11579024 ATATCACATA
11579034 TCGATACCATAGCCCAACTATGGTCTTACACAAATCACATATCTCACTGATGCCATATTCCAGAT
1 TCGATACCATAGCCCAACTATGGTCTTACACAAATCACATATCTCACTGATGCCATATTCCAGAT
*
11579099 ATGGTCTTATACAGTAGCATATATCACACCGATGCCATATCCCAGATATGGTCTTATACGAAAAT
66 ATGGTCTTATACAGTAGCATATATCACACCGATGACATATCCCAGATATGGTCTTATACGAAAAT
* *
11579164 CACTTGTCACTTGTCACTTGTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCAGAGCTACC
131 CACTTGTCACTTGTCACTTGTAGCCGAAGCTACCACTATTCACTAATCAGGTAGCCAAAGCTACC
11579229 ATTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACT
196 ATTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACT
11579294 TTTCACTGATCAGGTAGCCAAAGCTACCACTTTTCAGTTGTCATTTGTCATTGATCAGATAAGTG
261 TTTCACTGATCAGGTAGCCAAAGCTACCACTTTTCAGTTGTCATTTGTCATTGATCAGATAAGTG
* *
11579359 TAGCCGAAGCTATCACTTACCACTTTCACTTGTCCTTGATCAGATAAGTGTAGTCGAACCTATCA
326 TAGCCGAAGCTATCACTTACCACTTTCACTTGTCCTTAATCAGATAAGTGTAGCCGAACCTATCA
*
11579424 CTTATCACTTGTTGCCATAGTCCAACCAAGGTCTTTTCCTTCAATTCATCTTGTCATTGAACTAA
391 CTTATCACTTGTTGCCATAGTCCAACCAAGGTCTTTTCCTTCAATTCATCTTGTCACTGAACTAA
11579489 AATGCTCAATTTGATCATTTATTCAATTTTCATGCTTTTATATTATTCACGATTTTATCATCAAT
456 AATGCTCAATTTGATCATTTATTCAATTTTCATGCTTTTATATTATTCACGATTTTATCATCAAT
11579554 ACATATGAAATAACACATCATGAAATTCATAAAATTAACAAATAATCACTAAAATTTAGCCATAT
521 ACATATGAAATAACACATCATGAAATTCATAAAATTAACAAATAATCACTAAAATTTAGCCATAT
*
11579619 AAACTCAGAAGT
586 AAACTCAAAAGT
* * * *
11579631 TCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCATTGATGCCATATTCCAGAT
1 TCGATACCATAGCCCAACTATGGTCTTACACAAATCACATATCTCACTGATGCCATATTCCAGAT
*
11579696 ATGGTCTTATACAGTAGCATATATCACACCGATGACATATCCCAGATATGGTCTTATACGGAAAT
66 ATGGTCTTATACAGTAGCATATATCACACCGATGACATATCCCAGATATGGTCTTATACGAAAAT
*
11579761 CACTTGTCACTTGTCACTTGTAGTCGAAGCTACCACTATTCACTAATCAGGTAGCCAAAGCTACC
131 CACTTGTCACTTGTCACTTGTAGCCGAAGCTACCACTATTCACTAATCAGGTAGCCAAAGCTACC
* ** *
11579826 ATTTTTCACTGATTAGGTAGTTGGAGCTACCACTTTTCACTGGTCAGGTAGCAGAAGCTACCACT
196 ATTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACT
*
11579891 TTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCAGTTGTCATTTGTCATTGATCAGATAAGTG
261 TTTCACTGATCAGGTAGCCAAAGCTACCACTTTTCAGTTGTCATTTGTCATTGATCAGATAAGTG
*
11579956 TAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGTGTAGCCGAACCTATCA
326 TAGCCGAAGCTATCACTTACCACTTTCACTTGTCCTTAATCAGATAAGTGTAGCCGAACCTATCA
* *
11580021 CTTATCACTTGTTGCCATGGTCCAACCATGGTCTTTTCCTTCAATTCATCTTGTCACTGAACTAA
391 CTTATCACTTGTTGCCATAGTCCAACCAAGGTCTTTTCCTTCAATTCATCTTGTCACTGAACTAA
*
11580086 AATGCTCAATTTGATCATTTATTCAATTTTCATGCTTTTATATTGTTCACGATTTTATCATCAAT
456 AATGCTCAATTTGATCATTTATTCAATTTTCATGCTTTTATATTATTCACGATTTTATCATCAAT
*
11580151 ACATATGAAATAACACATCATGAAATTCATAAAATTAATAAATAATCACTAAAATTTAGCCATAT
521 ACATATGAAATAACACATCATGAAATTCATAAAATTAACAAATAATCACTAAAATTTAGCCATAT
11580216 AAACTCAAAAGT
586 AAACTCAAAAGT
11580228 TCGAT
1 TCGAT
11580233 TTTGTTATTA
Statistics
Matches: 579, Mismatches: 23, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
597 579 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.33
Consensus pattern (597 bp):
TCGATACCATAGCCCAACTATGGTCTTACACAAATCACATATCTCACTGATGCCATATTCCAGAT
ATGGTCTTATACAGTAGCATATATCACACCGATGACATATCCCAGATATGGTCTTATACGAAAAT
CACTTGTCACTTGTCACTTGTAGCCGAAGCTACCACTATTCACTAATCAGGTAGCCAAAGCTACC
ATTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACT
TTTCACTGATCAGGTAGCCAAAGCTACCACTTTTCAGTTGTCATTTGTCATTGATCAGATAAGTG
TAGCCGAAGCTATCACTTACCACTTTCACTTGTCCTTAATCAGATAAGTGTAGCCGAACCTATCA
CTTATCACTTGTTGCCATAGTCCAACCAAGGTCTTTTCCTTCAATTCATCTTGTCACTGAACTAA
AATGCTCAATTTGATCATTTATTCAATTTTCATGCTTTTATATTATTCACGATTTTATCATCAAT
ACATATGAAATAACACATCATGAAATTCATAAAATTAACAAATAATCACTAAAATTTAGCCATAT
AAACTCAAAAGT
Found at i:11582496 original size:26 final size:26
Alignment explanation
Indices: 11582461--11582631 Score: 115
Period size: 24 Copynumber: 6.8 Consensus size: 26
11582451 GCAGCTCTTA
* *
11582461 TGAGCGTCCCGATATATGGCTCTTTG
1 TGAGCTTCCCGTTATATGGCTCTTTG
* * *
11582487 TGAGCTTCCCGTT-TAAAGGTTTTTTG
1 TGAGCTTCCCGTTAT-ATGGCTCTTTG
**
11582513 TGAGCTTCCCGTTA-ATGGCTCTCCG
1 TGAGCTTCCCGTTATATGGCTCTTTG
* * ***
11582538 -GAGCTTCCTGATAT-TGGCTC-GCA
1 TGAGCTTCCCGTTATATGGCTCTTTG
*
11582561 TGAGCTTCCTGTTA-ATGGCTCTTTG
1 TGAGCTTCCCGTTATATGGCTCTTTG
* ***
11582586 -GAGCTTCCCGTTACATGGCTC-ACA
1 TGAGCTTCCCGTTATATGGCTCTTTG
*
11582610 TGAGCTTTCCGTTATATGGCTC
1 TGAGCTTCCCGTTATATGGCTC
11582632 AAGAGAGAGC
Statistics
Matches: 113, Mismatches: 24, Indels: 17
0.73 0.16 0.11
Matches are distributed among these distances:
23 1 0.01
24 47 0.42
25 33 0.29
26 32 0.28
ACGTcount: A:0.15, C:0.25, G:0.24, T:0.36
Consensus pattern (26 bp):
TGAGCTTCCCGTTATATGGCTCTTTG
Found at i:11582569 original size:48 final size:49
Alignment explanation
Indices: 11582513--11582631 Score: 150
Period size: 48 Copynumber: 2.4 Consensus size: 49
11582503 AGGTTTTTTG
* * *
11582513 TGAGCTTCCCGTTAATGGCTCTCCGGAGCTTCCTGATA-TTGGCTCGCA
1 TGAGCTTCCCGTTAATGGCTCTCCGGAGCTTCCCGATACATGGCTCACA
* ** *
11582561 TGAGCTTCCTGTTAATGGCTCTTTGGAGCTTCCCGTTACATGGCTCACA
1 TGAGCTTCCCGTTAATGGCTCTCCGGAGCTTCCCGATACATGGCTCACA
*
11582610 TGAGCTTTCCGTTATATGGCTC
1 TGAGCTTCCCGTTA-ATGGCTC
11582632 AAGAGAGAGC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
48 33 0.55
49 20 0.33
50 7 0.12
ACGTcount: A:0.15, C:0.27, G:0.24, T:0.34
Consensus pattern (49 bp):
TGAGCTTCCCGTTAATGGCTCTCCGGAGCTTCCCGATACATGGCTCACA
Found at i:11582649 original size:27 final size:26
Alignment explanation
Indices: 11582586--11582659 Score: 64
Period size: 25 Copynumber: 2.8 Consensus size: 26
11582576 TGGCTCTTTG
* * *
11582586 GAGCTTCCCGTTACATGGCTC-ACAT
1 GAGCTTCTCGTTATATGGCTCAACAA
*
11582611 GAGCTT-TCCGTTATATGGCTCAAGAGA
1 GAGCTTCT-CGTTATATGGCTCAACA-A
11582638 GAGCTTCTCGTT-TATGTGCTCA
1 GAGCTTCTCGTTATATG-GCTCA
11582660 TATGAGCATT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
25 18 0.45
26 6 0.15
27 15 0.38
28 1 0.03
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (26 bp):
GAGCTTCTCGTTATATGGCTCAACAA
Found at i:11585713 original size:26 final size:26
Alignment explanation
Indices: 11585684--11585744 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
11585674 TCAAAAATAT
** *
11585684 TTTTTAAATTTACTTTTCCACAA-CAC
1 TTTTTAAAAATACTTTT-CAAAAGCAC
*
11585710 TTTTTAAAAATACTTTTTAAAAGCAC
1 TTTTTAAAAATACTTTTCAAAAGCAC
11585736 TTTTTAAAA
1 TTTTTAAAA
11585745 GTAATGCTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 3 0.10
26 27 0.90
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.46
Consensus pattern (26 bp):
TTTTTAAAAATACTTTTCAAAAGCAC
Found at i:11585724 original size:13 final size:13
Alignment explanation
Indices: 11585669--11585744 Score: 62
Period size: 13 Copynumber: 5.8 Consensus size: 13
11585659 CTTAAATCAA
*
11585669 ACTTTTCAAAAAT
1 ACTTTTTAAAAAT
* **
11585682 ATTTTTTAAATTT
1 ACTTTTTAAAAAT
** * *
11585695 ACTTTTCCACAAC
1 ACTTTTTAAAAAT
11585708 ACTTTTTAAAAAT
1 ACTTTTTAAAAAT
**
11585721 ACTTTTTAAAAGC
1 ACTTTTTAAAAAT
11585734 ACTTTTTAAAA
1 ACTTTTTAAAA
11585745 GTAATGCTAA
Statistics
Matches: 46, Mismatches: 17, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.39, C:0.14, G:0.01, T:0.45
Consensus pattern (13 bp):
ACTTTTTAAAAAT
Found at i:11599063 original size:2 final size:2
Alignment explanation
Indices: 11599056--11599271 Score: 432
Period size: 2 Copynumber: 108.0 Consensus size: 2
11599046 ACAAAAAGAG
11599056 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
11599098 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
11599140 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
11599182 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
11599224 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
11599266 CT CT CT
1 CT CT CT
11599272 TAATTTGAAT
Statistics
Matches: 214, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 214 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:11600149 original size:2 final size:2
Alignment explanation
Indices: 11600144--11600180 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
11600134 AAAAATTATC
11600144 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11600181 TCTGTAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11602586 original size:5 final size:5
Alignment explanation
Indices: 11602576--11602602 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
11602566 TAAAAAAGAT
11602576 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
11602603 CTTCATGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:11604302 original size:13 final size:13
Alignment explanation
Indices: 11604284--11604310 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11604274 AACAAAAAAC
11604284 TAAATGAATCACA
1 TAAATGAATCACA
11604297 TAAATGAATCACA
1 TAAATGAATCACA
11604310 T
1 T
11604311 GAAACAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.26
Consensus pattern (13 bp):
TAAATGAATCACA
Found at i:11605559 original size:17 final size:17
Alignment explanation
Indices: 11605537--11605572 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11605527 TAATAAAAAA
11605537 TATTAAATTAATTTTTT
1 TATTAAATTAATTTTTT
* *
11605554 TATTAATTTTATTTTTT
1 TATTAAATTAATTTTTT
11605571 TA
1 TA
11605573 AATTTTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TATTAAATTAATTTTTT
Found at i:11605576 original size:15 final size:16
Alignment explanation
Indices: 11605547--11605587 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 16
11605537 TATTAAATTA
11605547 ATTTTTTTATTAATTTT
1 ATTTTTTTA-TAATTTT
11605564 ATTTTTTTA-AATTTT
1 ATTTTTTTATAATTTT
11605579 ATTTATTTT
1 ATTT-TTTT
11605588 TATTGTTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.43
16 4 0.17
17 9 0.39
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
ATTTTTTTATAATTTT
Found at i:11617468 original size:30 final size:29
Alignment explanation
Indices: 11617412--11617470 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
11617402 AATTAAGCTT
*
11617412 AAAATTTAAAATTTAAATTCTTAAAAATA
1 AAAATTTAAAATTTAAATTCTCAAAAATA
*
11617441 AAAATATTAAACTTTAAATT-TACAAAAATA
1 AAAAT-TTAAAATTTAAATTCT-CAAAAATA
11617471 CTAAACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (29 bp):
AAAATTTAAAATTTAAATTCTCAAAAATA
Found at i:11626886 original size:25 final size:25
Alignment explanation
Indices: 11626759--11626901 Score: 169
Period size: 25 Copynumber: 5.7 Consensus size: 25
11626749 TGTAAATGTT
* * * **
11626759 AAGCTCCTCCGAGCTAAATAACGGG
1 AAGCTCATGCGAGCTGAATAATAGG
11626784 AAGCTCATGCGAGCTGAATAATAGG
1 AAGCTCATGCGAGCTGAATAATAGG
11626809 AAGCTCATGCGAGCTGAATAATAGG
1 AAGCTCATGCGAGCTGAATAATAGG
* *
11626834 AAGCTCATGCGAGCTGAATAACATG
1 AAGCTCATGCGAGCTGAATAATAGG
* * * *
11626859 AAGCTTATGCGAGCTGAGTATTGGG
1 AAGCTCATGCGAGCTGAATAATAGG
**
11626884 AAGCTCATAAGAGCTGAA
1 AAGCTCATGCGAGCTGAA
11626902 ATCGGTGACC
Statistics
Matches: 101, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 101 1.00
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.20
Consensus pattern (25 bp):
AAGCTCATGCGAGCTGAATAATAGG
Found at i:11626886 original size:75 final size:75
Alignment explanation
Indices: 11626759--11626901 Score: 187
Period size: 75 Copynumber: 1.9 Consensus size: 75
11626749 TGTAAATGTT
* * **
11626759 AAGCTCCTCCGAGCTAAATAACGGGAAGCTCATGCGAGCTGAATAATAGGAAGCTCATGCGAGCT
1 AAGCTCATCCGAGCTAAATAACAGGAAGCTCATGCGAGCTGAATAATAGGAAGCTCATAAGAGCT
11626824 GAATAATAGG
66 GAATAATAGG
* * * * * * *
11626834 AAGCTCATGCGAGCTGAATAACATGAAGCTTATGCGAGCTGAGTATTGGGAAGCTCATAAGAGCT
1 AAGCTCATCCGAGCTAAATAACAGGAAGCTCATGCGAGCTGAATAATAGGAAGCTCATAAGAGCT
11626899 GAA
66 GAA
11626902 ATCGGTGACC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
75 57 1.00
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.20
Consensus pattern (75 bp):
AAGCTCATCCGAGCTAAATAACAGGAAGCTCATGCGAGCTGAATAATAGGAAGCTCATAAGAGCT
GAATAATAGG
Found at i:11629946 original size:52 final size:53
Alignment explanation
Indices: 11629817--11629982 Score: 178
Period size: 52 Copynumber: 3.1 Consensus size: 53
11629807 TCTTACACGG
* * * *
11629817 ATCACATAACGTACCGATGCCATATCCCAGATATGGTCTTCTA-TGGAATCACATT
1 ATCACAT--CGTACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCACA-T
** *
11629872 ATCACATCACACTGATGCCATAGCCCAGCTATGGTCTTATACGGGAA-CACGA-
1 ATCACATCGTACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCAC-AT
* * *
11629924 ATCACATTGTACCGATGCCATAGCCCAGCTATGGTCTTAAAC-GGAAGCACAT
1 ATCACATCGTACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCACAT
11629976 ATCACAT
1 ATCACAT
11629983 ATTTTCTATC
Statistics
Matches: 95, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
51 5 0.05
52 47 0.49
53 31 0.33
54 5 0.05
55 7 0.07
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (53 bp):
ATCACATCGTACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCACAT
Found at i:11632257 original size:18 final size:18
Alignment explanation
Indices: 11632207--11632271 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
11632197 CCGGCGCTCT
* *
11632207 ATAACAGTCAGTTATGCA
1 ATAACAGTCAATTATTCA
* * * *
11632225 GTAATAGTTATTTATTCA
1 ATAACAGTCAATTATTCA
*
11632243 ATAACAGTCAATTATTCC
1 ATAACAGTCAATTATTCA
*
11632261 ATAGCAGTCAA
1 ATAACAGTCAA
11632272 CCTTTAATAC
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (18 bp):
ATAACAGTCAATTATTCA
Found at i:11632398 original size:6 final size:6
Alignment explanation
Indices: 11632389--11632422 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
11632379 GAAATACACC
* *
11632389 GTAACG GTAACA GTAATA GTAACA GTAACA GTAA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAA
11632423 TGGTACACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.21
Consensus pattern (6 bp):
GTAACA
Found at i:11632416 original size:18 final size:18
Alignment explanation
Indices: 11632389--11632423 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
11632379 GAAATACACC
*
11632389 GTAACGGTAACAGTAATA
1 GTAACAGTAACAGTAATA
11632407 GTAACAGTAACAGTAAT
1 GTAACAGTAACAGTAAT
11632424 GGTACACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.23
Consensus pattern (18 bp):
GTAACAGTAACAGTAATA
Found at i:11632512 original size:51 final size:53
Alignment explanation
Indices: 11632406--11632520 Score: 137
Period size: 51 Copynumber: 2.2 Consensus size: 53
11632396 TAACAGTAAT
11632406 AGTAACAGTAACAGTAATGGTACACAAAGTACCTCATCGAAACAAATCTGAAAC
1 AGTAACAGTAACAGTAATGGTA-ACAAAGTACCTCATCGAAACAAATCTGAAAC
* * * * *
11632460 AGTAACAGTAACAGTCA-GGT-ACAGAGTACCTCTTCGGAACGAAT-TCGAAAC
1 AGTAACAGTAACAGTAATGGTAACAAAGTACCTCATCGAAACAAATCT-GAAAC
*
11632511 AGTCACAGTA
1 AGTAACAGTA
11632521 GTCGACACAT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
50 1 0.02
51 34 0.63
53 3 0.06
54 16 0.30
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (53 bp):
AGTAACAGTAACAGTAATGGTAACAAAGTACCTCATCGAAACAAATCTGAAAC
Found at i:11633587 original size:16 final size:18
Alignment explanation
Indices: 11633558--11633598 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
11633548 TCATCCTTTC
11633558 TTTCTTTTTCTATT-CTT
1 TTTCTTTTTCTATTCCTT
11633575 TTTCTTTTT-TATTCCTT
1 TTTCTTTTTCTATTCCTT
*
11633592 TTACTTT
1 TTTCTTT
11633599 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTTTCTATTCCTT
Found at i:11633891 original size:29 final size:30
Alignment explanation
Indices: 11633858--11633917 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
11633848 TTGTCTTTTC
11633858 TTAATTT-ATTTCATAATATAATAAC-ATAA
1 TTAATTTAATTT-ATAATATAATAACAATAA
* *
11633887 TTAATTTAATTTGTAATATAATGACAATAA
1 TTAATTTAATTTATAATATAATAACAATAA
11633917 T
1 T
11633918 AACAATAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 18 0.67
30 9 0.33
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (30 bp):
TTAATTTAATTTATAATATAATAACAATAA
Found at i:11640368 original size:17 final size:19
Alignment explanation
Indices: 11640326--11640369 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
11640316 ATGAAATTTT
*
11640326 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
11640345 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
11640363 AA-TATTA
1 AATTATTA
11640370 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:11640443 original size:2 final size:2
Alignment explanation
Indices: 11640436--11640468 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
11640426 TTAGATAGGA
*
11640436 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11640469 AAAGTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:11642181 original size:60 final size:59
Alignment explanation
Indices: 11642105--11642241 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
11642095 AATTGTGTTA
* * *
11642105 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTCATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGACCCAGATTAATACTG
* * *
11642165 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGACCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGACCCAGATTAATACTG
*
11642225 ATATGGACTAAGGCCCA
1 ATATGGGCT-AGGCCCA
11642242 GTTAACACTG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 1 0.02
60 50 0.76
61 15 0.23
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGACCCAGATTAATACTG
Found at i:11644060 original size:46 final size:46
Alignment explanation
Indices: 11643992--11644128 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
11643982 TATATATACA
* * * *
11643992 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
11644038 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
11644084 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
11644129 ATACACTTCC
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:11644173 original size:47 final size:47
Alignment explanation
Indices: 11644102--11644433 Score: 459
Period size: 47 Copynumber: 7.1 Consensus size: 47
11644092 ACACATTTCG
* * * * * * *
11644102 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCGCGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
**
11644149 CATTGGCCATTTTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
11644196 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
11644243 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
11644290 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
11644337 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * * * **
11644384 CATTTGCCATCCGGCCTTATCTCACATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
11644431 CAT
1 CAT
11644434 AAAATCCTAA
Statistics
Matches: 260, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 259 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:11644266 original size:22 final size:22
Alignment explanation
Indices: 11644192--11644266 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
11644182 GTTCACATTC
11644192 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
11644214 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
11644238 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
11644261 ATCACA
1 ATCACA
11644267 CATATACATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:11644313 original size:22 final size:22
Alignment explanation
Indices: 11644286--11644357 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
11644276 GTTCACATTC
11644286 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
11644308 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
11644332 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
11644355 ATC
1 ATC
11644358 TCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:11649782 original size:22 final size:23
Alignment explanation
Indices: 11649757--11649802 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
11649747 CAACCAAACC
11649757 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
11649779 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
11649802 A
1 A
11649803 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:11649808 original size:23 final size:23
Alignment explanation
Indices: 11649764--11649808 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
11649754 ACCAATTCAA
*
11649764 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
11649787 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
11649809 CACATACTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:11656458 original size:22 final size:23
Alignment explanation
Indices: 11656433--11656478 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
11656423 CAACCAAACC
11656433 AATTCA-CCATATTT-TCAAGATA
1 AATTCATCCATATTTAT-AAGATA
*
11656455 AATTCATGCATATTTATAAGATA
1 AATTCATCCATATTTATAAGATA
11656478 A
1 A
11656479 CATCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATCCATATTTATAAGATA
Found at i:11665204 original size:15 final size:15
Alignment explanation
Indices: 11665184--11665213 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11665174 ACACTTGTAC
11665184 TAAATCATCACCCTA
1 TAAATCATCACCCTA
11665199 TAAATCATCACCCTA
1 TAAATCATCACCCTA
11665214 CATTTGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAATCATCACCCTA
Found at i:11665811 original size:25 final size:25
Alignment explanation
Indices: 11665779--11665828 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
11665769 TTAATTAAGA
11665779 AAAATTTGCCTAATTAAAACTTAAT
1 AAAATTTGCCTAATTAAAACTTAAT
11665804 AAAATTTGCCTAATTAAAACTTAAT
1 AAAATTTGCCTAATTAAAACTTAAT
11665829 TAAGCTCACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.04, T:0.36
Consensus pattern (25 bp):
AAAATTTGCCTAATTAAAACTTAAT
Found at i:11673308 original size:11 final size:11
Alignment explanation
Indices: 11673292--11673334 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
11673282 GTGGTTATAA
11673292 TATTTTAATAT
1 TATTTTAATAT
11673303 TATTTTAATAT
1 TATTTTAATAT
11673314 TATTTTAA-AT
1 TATTTTAATAT
* *
11673324 TCTTATAATAT
1 TATTTTAATAT
11673335 GTGAAATGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTTAATAT
Found at i:11673334 original size:21 final size:22
Alignment explanation
Indices: 11673292--11673334 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
11673282 GTGGTTATAA
*
11673292 TATTTTAATATTATTTTAATAT
1 TATTTTAATATTATTATAATAT
*
11673314 TATTTTAA-ATTCTTATAATAT
1 TATTTTAATATTATTATAATAT
11673335 GTGAAATGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTTTAATATTATTATAATAT
Found at i:11673594 original size:87 final size:87
Alignment explanation
Indices: 11673448--11673621 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
11673438 TGTTAAAAGT
11673448 GCCTATTTGATTTGTCTTCATAAAAGGGAGGTCCTTATGATGCAATTAGACCATTGAACATATGA
1 GCCTATTTGATTTGTCTTCATAAAAGGGAGGTCCTTATGATGCAATTAGACCATTGAACATATGA
11673513 GTGGACATTAATGGCCTTGATA
66 GTGGACATTAATGGCCTTGATA
11673535 GCCTATTTGATTTGTCTTCATAAAAGGGAGGTCCTTATGATGCAATTAGACCATTGAACATATGA
1 GCCTATTTGATTTGTCTTCATAAAAGGGAGGTCCTTATGATGCAATTAGACCATTGAACATATGA
11673600 GTGGACATTAATGGCCTTGATA
66 GTGGACATTAATGGCCTTGATA
11673622 TTAATGTTTT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (87 bp):
GCCTATTTGATTTGTCTTCATAAAAGGGAGGTCCTTATGATGCAATTAGACCATTGAACATATGA
GTGGACATTAATGGCCTTGATA
Found at i:11678035 original size:58 final size:58
Alignment explanation
Indices: 11677963--11678098 Score: 254
Period size: 58 Copynumber: 2.3 Consensus size: 58
11677953 TTAGGGTCTA
*
11677963 ATTTAGCCTAGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGG
1 ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGG
*
11678021 ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTTTCGTTGCAGGG
1 ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGG
11678079 ATTTAGCCTGGACTGGTAAT
1 ATTTAGCCTGGACTGGTAAT
11678099 CTCGCTGCAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 76 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (58 bp):
ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGG
Found at i:11678752 original size:14 final size:14
Alignment explanation
Indices: 11678729--11678758 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11678719 TTGAAAATAT
11678729 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
11678743 GTTGATTTGGATTG
1 GTTGAATTGGATTG
11678757 GT
1 GT
11678759 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:11683909 original size:204 final size:204
Alignment explanation
Indices: 11683553--11683972 Score: 822
Period size: 204 Copynumber: 2.1 Consensus size: 204
11683543 TTAGAAATAA
*
11683553 AAAGATAAATTTGGTGAAAGTATTGTGGCAAAAGTACGGGATTGAGGAAGCGACATGGGAACTAG
1 AAAGAGAAATTTGGTGAAAGTATTGTGGCAAAAGTACGGGATTGAGGAAGCGACATGGGAACTAG
11683618 AGGAGGCAATGAGGAAACAATACCTAAATCTCTTTAATGGTAAGATTTTCGAGGACGAAAATCCT
66 AGGAGGCAATGAGGAAACAATACCTAAATCTCTTTAATGGTAAGATTTTCGAGGACGAAAATCCT
*
11683683 TAAAAGGGGGAGAGTTGTAATGACCTAAATTTAAAGTTATCGGAACAGTGGTTTCGTAACCACAA
131 TAAAAGGGGGAGAGTTGTAATGACCTAAATTTAAAGTTATCGGAACAGTGGTTTCGGAACCACAA
11683748 ATCCAATTT
196 ATCCAATTT
11683757 AAAGAGAAATTTGGTGAAAGTATTGTGGCAAAAGTACGGGATTGAGGAAGCGACATGGGAACTAG
1 AAAGAGAAATTTGGTGAAAGTATTGTGGCAAAAGTACGGGATTGAGGAAGCGACATGGGAACTAG
11683822 AGGAGGCAATGAGGAAACAATACCTAAATCTCTTTAATGGTAAGATTTTCGAGGACGAAAATCCT
66 AGGAGGCAATGAGGAAACAATACCTAAATCTCTTTAATGGTAAGATTTTCGAGGACGAAAATCCT
11683887 TAAAAGGGGGAGAGTTGTAATGACCTAAATTTAAAGTTATCGGAACAGTGGTTTCGGAACCACAA
131 TAAAAGGGGGAGAGTTGTAATGACCTAAATTTAAAGTTATCGGAACAGTGGTTTCGGAACCACAA
11683952 ATCCAATTT
196 ATCCAATTT
11683961 AAAGAGAAATTT
1 AAAGAGAAATTT
11683973 ATTTCAATAT
Statistics
Matches: 214, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
204 214 1.00
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (204 bp):
AAAGAGAAATTTGGTGAAAGTATTGTGGCAAAAGTACGGGATTGAGGAAGCGACATGGGAACTAG
AGGAGGCAATGAGGAAACAATACCTAAATCTCTTTAATGGTAAGATTTTCGAGGACGAAAATCCT
TAAAAGGGGGAGAGTTGTAATGACCTAAATTTAAAGTTATCGGAACAGTGGTTTCGGAACCACAA
ATCCAATTT
Found at i:11685474 original size:27 final size:27
Alignment explanation
Indices: 11685420--11685525 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
11685410 TGGCTGCCAA
* *
11685420 AACAGATAA-TGTGACAGAGTCACCAG
1 AACAGATAATTGTGGCAGAGCCACCAG
*
11685446 AACAGATAATTGTGGCAGAGCCACTAG
1 AACAGATAATTGTGGCAGAGCCACCAG
11685473 AACAGAT-ATATGTGGCAGAGCCACCAG
1 AACAGATAAT-TGTGGCAGAGCCACCAG
* * *
11685500 ATCAGATAAATGTGGCATAGCCACCA
1 AACAGATAATTGTGGCAGAGCCACCA
11685526 TAATATAGCC
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 11 0.16
27 58 0.83
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
AACAGATAATTGTGGCAGAGCCACCAG
Found at i:11685498 original size:54 final size:53
Alignment explanation
Indices: 11685420--11685523 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 53
11685410 TGGCTGCCAA
* *
11685420 AACAGATAATGTGACAGAGTCACCAGAACAGATAATTGTGGCAGAGCCACTAG
1 AACAGATAATGTGACAGAGCCACCAGAACAGATAAATGTGGCAGAGCCACTAG
* * *
11685473 AACAGATATATGTGGCAGAGCCACCAGATCAGATAAATGTGGCATAGCCAC
1 AACAGATA-ATGTGACAGAGCCACCAGAACAGATAAATGTGGCAGAGCCAC
11685524 CATAATATAG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.17
Consensus pattern (53 bp):
AACAGATAATGTGACAGAGCCACCAGAACAGATAAATGTGGCAGAGCCACTAG
Found at i:11686950 original size:24 final size:24
Alignment explanation
Indices: 11686923--11686993 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
11686913 CTAGATTTCC
*
11686923 TCCCTTATCTACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
11686947 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
11686971 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
11686994 CTCCTGACAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.27, C:0.38, G:0.00, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:11686963 original size:48 final size:48
Alignment explanation
Indices: 11686900--11686993 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 48
11686890 ACCTCTTGTT
* * *
11686900 CCTTAATCAGCTCCTAGATTTCC-TCCCTTATCTACTCCTAAATCCTATC
1 CCTTAATCAACTCCTA-A-ATCCATCCCTTATCAACTCCTAAATCCTATC
11686949 CCTT-ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCT
1 CCTTAATCAACTCCTAAATCC-ATCCCTTATCAACTCCTAAATCCT
11686994 CTCCTGACAG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
46 3 0.08
47 1 0.03
48 32 0.80
49 4 0.10
ACGTcount: A:0.26, C:0.37, G:0.02, T:0.35
Consensus pattern (48 bp):
CCTTAATCAACTCCTAAATCCATCCCTTATCAACTCCTAAATCCTATC
Found at i:11688934 original size:59 final size:59
Alignment explanation
Indices: 11688842--11689040 Score: 344
Period size: 59 Copynumber: 3.4 Consensus size: 59
11688832 ATTAGTGTCT
*
11688842 GAATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCATTGCAGG
1 GAATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
*
11688901 GAATTTAGCCTGGACTGGTAATTCGGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
1 GAATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
* * *
11688960 GGATTTAGCCTGTACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTTTCGTTGCAGG
1 GAATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
*
11689019 GGATTTAGCCTGGACTGGTAAT
1 GAATTTAGCCTGGACTGGTAAT
11689041 CTCGCTGCAA
Statistics
Matches: 133, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 133 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (59 bp):
GAATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
Found at i:11694575 original size:38 final size:38
Alignment explanation
Indices: 11694345--11694572 Score: 307
Period size: 38 Copynumber: 6.0 Consensus size: 38
11694335 CAATGTATAA
* * * *
11694345 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT
* * *
11694384 AAACTCAGATATAATACCAGCAC-TAGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
11694422 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
11694460 AACCCGGATATAATACCAGCACGAAGCTTGCGGAATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
11694498 AACCCGGATATATTACCAGCACGAAGCCTGTGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
11694536 AACCCGGATATAATACCAGCACAAAGCCTAC-GGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
11694573 TAAGCTCGGA
Statistics
Matches: 167, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
37 26 0.16
38 114 0.68
39 10 0.06
40 17 0.10
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:11711942 original size:85 final size:85
Alignment explanation
Indices: 11711789--11711949 Score: 213
Period size: 85 Copynumber: 1.9 Consensus size: 85
11711779 TGTGTTATTG
* * *
11711789 TGTAAGACCACGTCTGGGACGTTGGCACCGATTTTCTATTTACGTGTAAGACCACGTCTGGGACT
1 TGTAAGACCACGTCTGGGACGTTGGCACCGATTTTCGATTTACATGTAAGACCACGTCTAGGACT
11711854 TGGCATCGTATTTGATTTCA
66 TGGCATCGTATTTGATTTCA
*
11711874 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTT-GA-TTACATGTAAGACCACGTCTAGG
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCACCGAT-TTTCGATTTACATGTAAGACCACGTCTAGG
*
11711935 ACTTTGGCATTGTAT
63 AC-TTGGCATCGTAT
11711950 GAGCTTTCTG
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
84 24 0.36
85 39 0.58
86 4 0.06
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (85 bp):
TGTAAGACCACGTCTGGGACGTTGGCACCGATTTTCGATTTACATGTAAGACCACGTCTAGGACT
TGGCATCGTATTTGATTTCA
Found at i:11711943 original size:43 final size:42
Alignment explanation
Indices: 11711789--11711944 Score: 183
Period size: 43 Copynumber: 3.6 Consensus size: 42
11711779 TGTGTTATTG
* * *
11711789 TGTAAGACCACGTCTGGGACGTTGGCACCGAT-TTTCTATTTACG
1 TGTAAGACCACGTCTGGGAC-TTGGCATCGATATTT-GA-TTACA
*
11711833 TGTAAGACCACGTCTGGGACTTGGCATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGGGACTTGGCATCGATATTTGATTACA
*
11711874 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-TTGGCATCGATATTTGATTACA
*
11711917 TGTAAGACCACGTCTAGGACTTTGGCAT
1 TGTAAGACCACGTCTGGGAC-TTGGCAT
11711945 TGTATGAGCT
Statistics
Matches: 98, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
40 1 0.01
41 21 0.21
42 10 0.10
43 45 0.46
44 21 0.21
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACTTGGCATCGATATTTGATTACA
Found at i:11715082 original size:25 final size:25
Alignment explanation
Indices: 11715054--11715157 Score: 138
Period size: 25 Copynumber: 4.2 Consensus size: 25
11715044 TAAGCTCCTT
*
11715054 CGAGCCGAATAACGGGAAGATCATG
1 CGAGCTGAATAACGGGAAGATCATG
* *
11715079 CGAGCTGAATAATGGGAAGCTCATG
1 CGAGCTGAATAACGGGAAGATCATG
* * *
11715104 CAAGCTGAATAACGGGAAGCTCATA
1 CGAGCTGAATAACGGGAAGATCATG
11715129 CGAGCTGAATAACGGGAA-ACTCATG
1 CGAGCTGAATAACGGGAAGA-TCATG
11715154 CGAG
1 CGAG
11715158 TTGAGTATCA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
25 69 1.00
ACGTcount: A:0.36, C:0.19, G:0.30, T:0.15
Consensus pattern (25 bp):
CGAGCTGAATAACGGGAAGATCATG
Found at i:11715120 original size:50 final size:50
Alignment explanation
Indices: 11715060--11715154 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
11715050 CCTTCGAGCC
* * *
11715060 GAATAACGGGAAGATCATGCGAGCTGAATAATGGGAAGCTCATGCAAGCT
1 GAATAACGGGAAGATCATACGAGCTGAATAACGGGAAACTCATGCAAGCT
*
11715110 GAATAACGGGAAGCTCATACGAGCTGAATAACGGGAAACTCATGC
1 GAATAACGGGAAGATCATACGAGCTGAATAACGGGAAACTCATGC
11715155 GAGTTGAGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.17
Consensus pattern (50 bp):
GAATAACGGGAAGATCATACGAGCTGAATAACGGGAAACTCATGCAAGCT
Found at i:11715172 original size:50 final size:50
Alignment explanation
Indices: 11715060--11715187 Score: 148
Period size: 50 Copynumber: 2.6 Consensus size: 50
11715050 CCTTCGAGCC
* * * * *
11715060 GAATAACGGGAAGATCATGCGAGCTGAATAATGGGAAGCTCATGCAAGCT
1 GAATAACAGGAAGCTCATACGAGCTGAATAACGGGAAACTCATGCAAGCT
* * *
11715110 GAATAACGGGAAGCTCATACGAGCTGAATAACGGGAAACTCATGCGAGTT
1 GAATAACAGGAAGCTCATACGAGCTGAATAACGGGAAACTCATGCAAGCT
* * * *
11715160 GAGTATCAGGAAGCTCATAAGAGTTGAA
1 GAATAACAGGAAGCTCATACGAGCTGAA
11715188 ATCGGTGACC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.37, C:0.16, G:0.29, T:0.19
Consensus pattern (50 bp):
GAATAACAGGAAGCTCATACGAGCTGAATAACGGGAAACTCATGCAAGCT
Found at i:11715172 original size:75 final size:75
Alignment explanation
Indices: 11715039--11715177 Score: 183
Period size: 75 Copynumber: 1.9 Consensus size: 75
11715029 ACGAGTTGTA
* * * *
11715039 AACGGTAAGCTCCTTCGAGCCGAATAACGGGAAGATCATGCGAGCTGAATAATGGGAAGCTCATG
1 AACGGGAAGCTCATACGAGCCGAATAACGGGAAGATCATGCGAGCTGAATAATAGGAAGCTCATG
11715104 CAAGCTGAAT
66 CAAGCTGAAT
* * *
11715114 AACGGGAAGCTCATACGAGCTGAATAACGGGAA-ACTCATGCGAGTTGAGT-ATCAGGAAGCTCA
1 AACGGGAAGCTCATACGAGCCGAATAACGGGAAGA-TCATGCGAGCTGAATAAT-AGGAAGCTCA
11715177 T
64 T
11715178 AAGAGTTGAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
74 3 0.05
75 52 0.95
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (75 bp):
AACGGGAAGCTCATACGAGCCGAATAACGGGAAGATCATGCGAGCTGAATAATAGGAAGCTCATG
CAAGCTGAAT
Found at i:11718276 original size:75 final size:73
Alignment explanation
Indices: 11718188--11718359 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
11718178 GGTTTTCCTC
*** * * **
11718188 ATTGAAATACCATACCTACATTTTTTAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
11718252 TCAGTATGG
65 TCAGTATGG
*
11718261 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
11718326 CTCAGTATGG
64 CTCAGTATGG
11718336 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
11718360 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:11718357 original size:35 final size:35
Alignment explanation
Indices: 11718193--11718359 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
11718183 TCCTCATTGA
*** *
11718193 AATACCATACCTACATTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
11718228 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
11718268 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
11718303 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
11718338 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
11718360 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:11725774 original size:75 final size:73
Alignment explanation
Indices: 11725686--11725857 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
11725676 GGTTTTCCTC
*** * * **
11725686 ATTGAAATACCATACCTACATTTTTTAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
11725750 TCAGTATGG
65 TCAGTATGG
*
11725759 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
11725824 CTCAGTATGG
64 CTCAGTATGG
11725834 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
11725858 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:11725855 original size:35 final size:35
Alignment explanation
Indices: 11725691--11725857 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
11725681 TCCTCATTGA
*** *
11725691 AATACCATACCTACATTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
11725726 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
11725766 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
11725801 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
11725836 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
11725858 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:11728365 original size:23 final size:23
Alignment explanation
Indices: 11728338--11728381 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
11728328 AGTGTGACTA
11728338 TGTGAGTGTTCTTTAGCCAATAT
1 TGTGAGTGTTCTTTAGCCAATAT
11728361 TGTGAGTGTTCTTTAGCCAAT
1 TGTGAGTGTTCTTTAGCCAAT
11728382 GTTGGATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.43
Consensus pattern (23 bp):
TGTGAGTGTTCTTTAGCCAATAT
Found at i:11738697 original size:47 final size:47
Alignment explanation
Indices: 11738643--11738828 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 47
11738633 TTAGGATTTT
** * *
11738643 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
11738690 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
11738737 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
11738784 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
11738829 TAATATGAAA
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 127 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:11738743 original size:22 final size:22
Alignment explanation
Indices: 11738672--11738743 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
11738662 GTATATATGA
11738672 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
11738694 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
11738719 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
11738741 GAT
1 GAT
11738744 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:11738792 original size:25 final size:25
Alignment explanation
Indices: 11738717--11738792 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
11738707 ATGCATATAT
11738717 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
11738742 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
11738764 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
11738789 GTGA
1 GTGA
11738793 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:11738863 original size:48 final size:48
Alignment explanation
Indices: 11738806--11739038 Score: 369
Period size: 48 Copynumber: 4.8 Consensus size: 48
11738796 TGAACATGCA
*
11738806 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
11738854 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
*
11738902 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
* * * *
11738950 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGAAATG
*
11739000 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
11739039 GGCGATGTGC
Statistics
Matches: 172, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
47 1 0.01
48 126 0.73
49 4 0.02
50 40 0.23
51 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
Found at i:11739329 original size:37 final size:37
Alignment explanation
Indices: 11739184--11739328 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
11739174 GGAAATATAT
11739184 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
11739221 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
11739258 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
11739295 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
11739329 TCGTCTGAGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:11740432 original size:46 final size:46
Alignment explanation
Indices: 11740380--11740653 Score: 397
Period size: 46 Copynumber: 6.0 Consensus size: 46
11740370 AGTGTGCTCT
*
11740380 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
11740426 CTGATATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
11740472 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
11740518 ATGACAGGAAATGATTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
11740564 CTGATATGAAATGAATAAGACCATGGCTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
11740610 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
11740654 TCATGTCAAA
Statistics
Matches: 207, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 206 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:11742102 original size:11 final size:11
Alignment explanation
Indices: 11742086--11742110 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11742076 TCTAGATATT
11742086 TTATTATTTTA
1 TTATTATTTTA
11742097 TTATTATTTTA
1 TTATTATTTTA
11742108 TTA
1 TTA
11742111 ATAATTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:11744302 original size:46 final size:46
Alignment explanation
Indices: 11744250--11744513 Score: 395
Period size: 46 Copynumber: 5.7 Consensus size: 46
11744240 AGTGTGCTCT
11744250 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
* *
11744296 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGACAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
* *
11744342 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
*
11744388 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
* ***
11744434 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
* * * *
11744480 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
11744514 CACTATGACA
Statistics
Matches: 200, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 199 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
Found at i:11745613 original size:12 final size:12
Alignment explanation
Indices: 11745582--11745607 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11745572 TTCAACTAAT
11745582 AAAGCAAACAAA
1 AAAGCAAACAAA
11745594 AAAGCAAACAAA
1 AAAGCAAACAAA
11745606 AA
1 AA
11745608 CTCAAATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.15, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGCAAACAAA
Found at i:11745924 original size:101 final size:101
Alignment explanation
Indices: 11745781--11745976 Score: 286
Period size: 101 Copynumber: 1.9 Consensus size: 101
11745771 TTTTATTAAA
* * * *
11745781 TGTACTTGGTGTCGACCATTACATGGTCCGCACCTAATTTTTTTTTAAATACACTGGTATCGGCC
1 TGTACTTGGTGTCGACCATTACATGGTCCGCACCCAAATTTTTTTTAAATACACTGGTACCGGCA
11745846 ATCAGTGTTCCAAAAAAAATGCATTGGGAGTCGAAT
66 ATCAGTGTTCCAAAAAAAATGCATTGGGAGTCGAAT
* * * *
11745882 TGTACTTGGTGTCGGCCATTACATGG-CCAGCACCCAAATTTTTTTTAAATACATTGGTGCCGGT
1 TGTACTTGGTGTCGACCATTACATGGTCC-GCACCCAAATTTTTTTTAAATACACTGGTACCGGC
* *
11745946 AATCAGTGTTCCAAAAAAATTGTATTGGGAG
65 AATCAGTGTTCCAAAAAAAATGCATTGGGAG
11745977 CCAAAGTTGT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 2 0.02
101 82 0.98
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (101 bp):
TGTACTTGGTGTCGACCATTACATGGTCCGCACCCAAATTTTTTTTAAATACACTGGTACCGGCA
ATCAGTGTTCCAAAAAAAATGCATTGGGAGTCGAAT
Found at i:11748251 original size:18 final size:18
Alignment explanation
Indices: 11748228--11748288 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
11748218 GAATAATTAT
11748228 TTATTCAATAACAGTCAG
1 TTATTCAATAACAGTCAG
* *
11748246 TTATTCAGTAACAGTCAA
1 TTATTCAATAACAGTCAG
* **
11748264 TTATTCAATAATAACCAG
1 TTATTCAATAACAGTCAG
11748282 TTATTCA
1 TTATTCA
11748289 GTATCGATCA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (18 bp):
TTATTCAATAACAGTCAG
Found at i:11748273 original size:36 final size:36
Alignment explanation
Indices: 11748228--11748497 Score: 120
Period size: 36 Copynumber: 7.8 Consensus size: 36
11748218 GAATAATTAT
* *
11748228 TTATTCAATAACAGTCAGTTATTCAGTAACAGTCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAGTCAA
* * * *
11748264 TTATTCAATAATAACCAGTTATTCAGTATC-GATC-A
1 TTATTCAGTAACAATCAGTTATTCAGTAACAG-TCAA
* *
11748299 --ATT--G-----ATCGGTTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAGTCAA
* * *
11748326 TTATTCAGTAA-AATCAGATATTCAGTAACAATTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAGTCAA
** * * * *
11748361 GTTATTCAGTAGTAGTCA-TTCATTCAGTGACAATCAG
1 -TTATTCAGTAACAATCAGTT-ATTCAGTAACAGTCAA
* ** * * * *
11748398 TTATTTAGTAATGATCAATTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAGTTATTCAGTAACAGTCAA
* * *
11748434 TTATTCAGTAACAGTC--TAAATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAGT-TATTCAGTAACAGTCAA
* * * *
11748469 TTATCCGGTAACAGTCAATTATTCAGTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAA
11748498 TAATCAGTTA
Statistics
Matches: 176, Mismatches: 40, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
26 15 0.09
27 2 0.01
29 3 0.02
31 1 0.01
33 3 0.02
34 1 0.01
35 46 0.26
36 85 0.48
37 20 0.11
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAGTCAA
Found at i:11748334 original size:18 final size:18
Alignment explanation
Indices: 11748308--11748497 Score: 140
Period size: 18 Copynumber: 10.6 Consensus size: 18
11748298 AATTGATCGG
*
11748308 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
*
11748326 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
* *
11748344 -TATTCAGTAACAATTAA
1 TTATTCAGTAACAGTCAA
**
11748361 GTTATTCAGTAGTAGTC-A
1 -TTATTCAGTAACAGTCAA
* * *
11748379 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAA
* *
11748398 TTATTTAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
11748416 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
11748434 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
*
11748453 --ATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
11748469 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
11748487 TTATTCAGTAA
1 TTATTCAGTAA
11748498 TAATCAGTTA
Statistics
Matches: 133, Mismatches: 28, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
16 2 0.02
17 30 0.23
18 87 0.65
19 14 0.11
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:11748736 original size:45 final size:45
Alignment explanation
Indices: 11748685--11748873 Score: 279
Period size: 45 Copynumber: 4.2 Consensus size: 45
11748675 ATTCAGAACA
* * * *
11748685 GTAACAGTAACAGTATTCAACACACAAAGTGTTGAATCGGTAATG
1 GTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGGTAACG
11748730 GTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGGTAACG
1 GTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGGTAACG
* *
11748775 GTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACA
1 GTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGGTAACG
* * * *
11748820 GTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCAGTAACA
1 GTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGGTAACG
*
11748865 GTAGCAGTA
1 GTAACAGTA
11748874 GCAGTAACAG
Statistics
Matches: 136, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (45 bp):
GTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGGTAACG
Found at i:11749293 original size:5 final size:5
Alignment explanation
Indices: 11749282--11749333 Score: 77
Period size: 5 Copynumber: 10.2 Consensus size: 5
11749272 AATTAATCAT
* *
11749282 AATTC CATTC CATTC AATTC AATTC AATTC AATTC AATTC AATTC AAATTC
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC -AATTC
11749333 A
1 A
11749334 CTTTTCCACT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
5 39 0.89
6 5 0.11
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTC
Found at i:11751007 original size:3 final size:3
Alignment explanation
Indices: 11750999--11751048 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
11750989 TTATATATAT
11750999 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
11751047 AT
1 AT
11751049 GACTTTATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:11751847 original size:2 final size:2
Alignment explanation
Indices: 11751840--11751875 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
11751830 GTCAAACTTA
11751840 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11751876 CTCCCTACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11752975 original size:128 final size:127
Alignment explanation
Indices: 11752673--11753021 Score: 434
Period size: 128 Copynumber: 2.7 Consensus size: 127
11752663 ATGCAAACGG
** * * * *
11752673 AATTTTAAAGGGATGTTTGATTATTTATATAAACAGAAA-ATCGAAACCCAGCACATTAGGACAC
1 AATTTTAAAGGGAAATTTGATTATTTAGACAAAC-GAAAGATCGAAACCCAACACATTAGGGCAC
** * * * *
11752737 GAT-TTTCCGAA-TTCTCAAACATCAATCATCGCTTTTGTTTTAAAGCTTAGAAAACGCGGATGA
65 GATCCCT-CGAATTTCT-AAACATCAAACATCGCCTTTGTTTTAAAGCTTAGAAAACGCAGATCA
* * **
11752800 AATTTAAAAGGGAAATCTGATTATTTAGACAAATAAAAGATCGAAACCCAACACATTAGGGCACG
1 AATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCGAAACCCAACACATTAGGGCACG
* * *
11752865 ATCCCTCGAATTTCTAAACATCAAACATTGCCTTTGTTTTAATGGTTTAGAAAACGCAGATCA
66 ATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGTTTTAA-AGCTTAGAAAACGCAGATCA
* * * *
11752928 AATTTTAAAGGGAAATTTGACTATTTAGACAAACGAAAGACCGAAACCCAACACATTAGGGTACA
1 AATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCGAAACCCAACACATTAGGGCACG
11752993 ATCCCTCGAATTTCTAAACATCAAACATC
66 ATCCCTCGAATTTCTAAACATCAAACATC
11753022 ACTTTCGTTT
Statistics
Matches: 190, Mismatches: 28, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
126 3 0.02
127 81 0.43
128 106 0.56
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.28
Consensus pattern (127 bp):
AATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCGAAACCCAACACATTAGGGCACG
ATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGTTTTAAAGCTTAGAAAACGCAGATCA
Found at i:11756347 original size:33 final size:33
Alignment explanation
Indices: 11756308--11756379 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
11756298 AAACATATTT
*
11756308 TTATTATTGTATTATTATTAAATATTATAAGTA
1 TTATTATTGTATGATTATTAAATATTATAAGTA
* * *
11756341 TTATTATTGTATGATTGTTAAATATTATTATTA
1 TTATTATTGTATGATTATTAAATATTATAAGTA
11756374 TTATTA
1 TTATTA
11756380 AAGTTATAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (33 bp):
TTATTATTGTATGATTATTAAATATTATAAGTA
Found at i:11756707 original size:18 final size:19
Alignment explanation
Indices: 11756684--11756728 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
11756674 AAATGTACTA
*
11756684 ATTAATTT-TTTGGATCAC
1 ATTAATTTCTTTGGACCAC
11756702 ATTAATTTCTTTGGACCAC
1 ATTAATTTCTTTGGACCAC
11756721 ATTAATTT
1 ATTAATTT
11756729 AAGATCTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.29, C:0.13, G:0.09, T:0.49
Consensus pattern (19 bp):
ATTAATTTCTTTGGACCAC
Found at i:11760791 original size:3 final size:3
Alignment explanation
Indices: 11760783--11760821 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
11760773 TACAACAGTT
* *
11760783 TAA TAA TAA TAA TAA TAA TAA TGA CAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
11760822 AATGATTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:11760831 original size:18 final size:20
Alignment explanation
Indices: 11760787--11760826 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
11760777 ACAGTTTAAT
11760787 AATAATAATAATAATAATGA
1 AATAATAATAATAATAATGA
11760807 CAATAATAATAATAA-AATGA
1 -AATAATAATAATAATAATGA
11760827 TTAATTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (20 bp):
AATAATAATAATAATAATGA
Found at i:11765359 original size:9 final size:9
Alignment explanation
Indices: 11765341--11765426 Score: 100
Period size: 9 Copynumber: 9.6 Consensus size: 9
11765331 TTTATACAAA
*
11765341 TAATTTGGT
1 TAATTCGGT
11765350 TAATTCGGT
1 TAATTCGGT
* *
11765359 TAATTTGGG
1 TAATTCGGT
*
11765368 TAATTCGGG
1 TAATTCGGT
* *
11765377 TATTTCGGG
1 TAATTCGGT
*
11765386 TAATTTGGT
1 TAATTCGGT
*
11765395 TAATTCGAT
1 TAATTCGGT
11765404 TAATTCGGT
1 TAATTCGGT
11765413 TAATTCGGT
1 TAATTCGGT
11765422 TAATT
1 TAATT
11765427 TTATACTTAT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 66 1.00
ACGTcount: A:0.23, C:0.07, G:0.23, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:11766215 original size:18 final size:18
Alignment explanation
Indices: 11766192--11766245 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
11766182 CCACCACCAA
11766192 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
11766210 CTCCACT----AC-C-TA
1 CTCCACTAGCCACACTTG
11766222 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
11766240 CTCCAC
1 CTCCAC
11766246 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:11766225 original size:30 final size:30
Alignment explanation
Indices: 11766182--11766250 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
11766172 TTAGCCTTTG
11766182 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
11766212 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
11766242 CCACCACCA
1 CCACCACCA
11766251 CTTGTACCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:11766443 original size:18 final size:18
Alignment explanation
Indices: 11766420--11766463 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
11766410 GAACAGTTTG
11766420 TGGAGAGGAGAGAATTTT
1 TGGAGAGGAGAGAATTTT
11766438 TGGAGAGGAGAGAATTTT
1 TGGAGAGGAGAGAATTTT
11766456 TGGAGAGG
1 TGGAGAGG
11766464 CTAAGTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.43, T:0.25
Consensus pattern (18 bp):
TGGAGAGGAGAGAATTTT
Found at i:11766763 original size:3 final size:3
Alignment explanation
Indices: 11766745--11766787 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
11766735 GAGGAGAGTG
* *
11766745 TTA TTT TTA ATA TTA TTA TTA TTA TTA TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
11766788 CTTACACACT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:11766778 original size:19 final size:18
Alignment explanation
Indices: 11766745--11766787 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
11766735 GAGGAGAGTG
*
11766745 TTATTTTTAATATTATTA
1 TTATTATTAATATTATTA
11766763 TTATTATTATATATTATTA
1 TTATTATTA-ATATTATTA
11766782 TTATTA
1 TTATTA
11766788 CTTACACACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATTATTAATATTATTA
Found at i:11777010 original size:25 final size:25
Alignment explanation
Indices: 11776960--11777010 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
11776950 AGTTTCTCAT
* *
11776960 TATTTAGCTCTTATGAGCATCTCGA
1 TATTTAGCTCTTACGAGCATCCCGA
*
11776985 TATTTAGCT-TTCACGAGCTTCCCGA
1 TATTTAGCTCTT-ACGAGCATCCCGA
11777010 T
1 T
11777011 TAATGGCTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.39
Consensus pattern (25 bp):
TATTTAGCTCTTACGAGCATCCCGA
Found at i:11777067 original size:25 final size:25
Alignment explanation
Indices: 11776999--11777069 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
11776989 TAGCTTTCAC
*
11776999 GAGCTTCCCGATTA-ATGGCTCTCTT
1 GAGCTTCCCG-TTATATGGCTCTCAT
* * * *
11777024 AAGCTTCCCGATGTTTGGCTCGT-AT
1 GAGCTTCCCGTTATATGGCTC-TCAT
11777049 GAGCTTCCCGTTATATGGCTC
1 GAGCTTCCCGTTATATGGCTC
11777070 AGAAGAAGGT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
24 1 0.03
25 33 0.94
26 1 0.03
ACGTcount: A:0.15, C:0.27, G:0.23, T:0.35
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCTCAT
Found at i:11779290 original size:2 final size:2
Alignment explanation
Indices: 11779283--11779309 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11779273 GAGACTAGTC
11779283 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
11779310 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11780638 original size:68 final size:64
Alignment explanation
Indices: 11780497--11780845 Score: 191
Period size: 68 Copynumber: 5.3 Consensus size: 64
11780487 TGGAACCACG
** * * *
11780497 CATGCGACCTAGCTACATAT-ATCCCGTAGCTCTCTTGTCTACATGGTGTACACAT-AGTA-TCA
1 CATGCGACCTAGCTACATATAATCTTGTAGCTCTCTTGTC-ACATGATGTGCAC-TCAGCACT-A
*
11780559 CC
63 CA
11780561 CATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAGCACT
1 CATGCGACCTAGCTACAT-ATAA--TCTTGTAGCTCTCTTGT-CACATGATGTGCACTCAGCACT
*
11780626 ATA
62 ACA
* ** * * * *
11780629 CATGTGACCTAGCTACATACCATC-TGTATCATCCAATCTT-TC-C--GAAGGTTCAAC-CGGGG
1 CATGCGACCTAGCTACATATAATCTTGTAGC-T-C--TCTTGTCACATG-ATGTGC-ACTC--AG
* * *
11780688 AACCACG
58 CACTACA
** * * *
11780695 CATGCGACCTAGCTACATAT-ATCCCGTAGCTCTCTTGTCTACATGGTGTACACAT-AGTA-TCA
1 CATGCGACCTAGCTACATATAATCTTGTAGCTCTCTTGTC-ACATGATGTGCAC-TCAGCACT-A
*
11780757 CC
63 CA
11780759 CATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAGCACT
1 CATGCGACCTAGCTACAT-ATAA--TCTTGTAGCTCTCTTGT-CACATGATGTGCACTCAGCACT
*
11780824 ATA
62 ACA
*
11780827 CATGTGACCTAGCTACATA
1 CATGCGACCTAGCTACATA
11780846 CCATCTGTAT
Statistics
Matches: 217, Mismatches: 37, Indels: 59
0.69 0.12 0.19
Matches are distributed among these distances:
62 4 0.02
63 3 0.01
64 51 0.24
65 17 0.08
66 33 0.15
67 7 0.03
68 98 0.45
69 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (64 bp):
CATGCGACCTAGCTACATATAATCTTGTAGCTCTCTTGTCACATGATGTGCACTCAGCACTACA
Found at i:11780733 original size:198 final size:198
Alignment explanation
Indices: 11780488--11780884 Score: 794
Period size: 198 Copynumber: 2.0 Consensus size: 198
11780478 TCCTTCACTT
11780488 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
11780553 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
66 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
11780618 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
131 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
11780683 CGG
196 CGG
11780686 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
11780751 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
66 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
11780816 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
131 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
11780881 CGG
196 CGG
11780884 G
1 G
11780885 ATTTCTCTCT
Statistics
Matches: 199, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
198 199 1.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (198 bp):
GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
CGG
Found at i:11782882 original size:15 final size:16
Alignment explanation
Indices: 11782853--11782882 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11782843 AGGATTCAGT
11782853 TTTTTTTCTTCTTCTA
1 TTTTTTTCTTCTTCTA
11782869 TTTTTTTCTT-TTCT
1 TTTTTTTCTTCTTCT
11782883 TTTCTCCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTTTCTTCTTCTA
Found at i:11783692 original size:8 final size:8
Alignment explanation
Indices: 11783675--11783707 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
11783665 CTAGATCGGC
*
11783675 AAAAGCCG
1 AAAAGTCG
11783683 AAAAGTCG
1 AAAAGTCG
11783691 AAAAGTCG
1 AAAAGTCG
11783699 AAAAGTCG
1 AAAAGTCG
11783707 A
1 A
11783708 CATTTGTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.52, C:0.15, G:0.24, T:0.09
Consensus pattern (8 bp):
AAAAGTCG
Found at i:11789899 original size:16 final size:17
Alignment explanation
Indices: 11789867--11789899 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
11789857 CATCAAGAAG
11789867 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
11789885 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
11789900 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:11790994 original size:19 final size:19
Alignment explanation
Indices: 11790982--11791028 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
11790972 AATAAAAATG
11790982 AATGAAATGAATAGAAAAA
1 AATGAAATGAATAGAAAAA
*
11791001 AATGGAATGAATAGAAAAA
1 AATGAAATGAATAGAAAAA
11791020 AA-GAAATGA
1 AATGAAATGA
11791029 GAAACATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.15
Consensus pattern (19 bp):
AATGAAATGAATAGAAAAA
Found at i:11791942 original size:21 final size:20
Alignment explanation
Indices: 11791900--11791948 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
11791890 TTAAGTTATA
**
11791900 AATTATAAATATATTATTTT
1 AATTATAAATATATTAAATT
*
11791920 AATTATAAATTGTATTAAATT
1 AATTATAAA-TATATTAAATT
11791941 AATT-TAAA
1 AATTATAAA
11791949 ATAATTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
AATTATAAATATATTAAATT
Found at i:11793272 original size:18 final size:18
Alignment explanation
Indices: 11793249--11793285 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
11793239 TTTGCGATCA
11793249 AAATTGAAAGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
*
11793267 AAATTGAAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
11793285 A
1 A
11793286 TATGAATTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:11793274 original size:12 final size:12
Alignment explanation
Indices: 11793249--11793285 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
11793239 TTTGCGATCA
11793249 AAATTGAAAGTG
1 AAATTGAAAGTG
* *
11793261 AAAGTGAAATTG
1 AAATTGAAAGTG
11793273 AAATTGAAAGTG
1 AAATTGAAAGTG
11793285 A
1 A
11793286 TATGAATTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (12 bp):
AAATTGAAAGTG
Found at i:11793298 original size:18 final size:19
Alignment explanation
Indices: 11793249--11793298 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
11793239 TTTGCGATCA
11793249 AAATTGAAA-GTGAAAGTG
1 AAATTGAAATGTGAAAGTG
11793267 AAATTGAAAT-TGAAAGTG
1 AAATTGAAATGTGAAAGTG
* *
11793285 ATA-TGAATTGTGAA
1 AAATTGAAATGTGAA
11793299 TTGAAAATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 5 0.18
18 23 0.82
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28
Consensus pattern (19 bp):
AAATTGAAATGTGAAAGTG
Found at i:11795810 original size:39 final size:39
Alignment explanation
Indices: 11795748--11796024 Score: 446
Period size: 39 Copynumber: 7.1 Consensus size: 39
11795738 AATTATATTA
* * * * *
11795748 CCAGCACAAAGCCCGCGGGACTTTAGCTCGGACACGTTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
11795787 CCAACACGAAGCCTACGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
11795826 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
11795865 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
11795904 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
11795943 CCAGCAGGAAGCCTGCGGGACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
11795982 CCAGCATGAAGCCTGCGGGACTTTAGCCCGTATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
11796021 CCAG
1 CCAG
11796025 TGTCTTGCAT
Statistics
Matches: 222, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 222 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:11798442 original size:26 final size:26
Alignment explanation
Indices: 11798405--11798488 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
11798395 TGATACAAAT
* *
11798405 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11798431 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11798457 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11798483 TGATAA
1 TGATAA
11798489 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:11800149 original size:27 final size:27
Alignment explanation
Indices: 11800108--11800220 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
11800098 GAGGAAGCGT
*
11800108 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
11800135 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
11800162 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
11800190 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
11800216 TCTGG
1 TCTGG
11800221 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:11800213 original size:54 final size:54
Alignment explanation
Indices: 11800106--11800220 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
11800096 TGGAGGAAGC
*
11800106 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
11800160 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
11800214 GTTCTGG
1 GTTCTGG
11800221 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:11806012 original size:46 final size:46
Alignment explanation
Indices: 11805936--11806430 Score: 631
Period size: 46 Copynumber: 10.8 Consensus size: 46
11805926 TGATGTCATA
* * * *
11805936 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCATGTTGCCATG
* * ***
11805982 GTATCTTTCAACCATCGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCATGTTGCCATG
* * *
11806029 GTATCTTTCAACCATGGTCTTATTCATTTTCCTGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCATGTTGCCATG
* *
11806076 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
* *
11806122 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
* *
11806168 GTATC-TT---CCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
* *
11806210 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
* * ***
11806256 GTATCCTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCATGTTGCCATG
*
11806303 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
* * * *
11806349 GTATGTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCTTG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
* *
11806395 GTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCA
11806431 GAGAGCACAC
Statistics
Matches: 408, Mismatches: 34, Indels: 14
0.89 0.07 0.03
Matches are distributed among these distances:
42 40 0.10
43 2 0.00
45 2 0.00
46 240 0.59
47 124 0.30
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
Found at i:11806125 original size:93 final size:92
Alignment explanation
Indices: 11805936--11806430 Score: 649
Period size: 93 Copynumber: 5.4 Consensus size: 92
11805926 TGATGTCATA
* * * * * *
11805936 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATGGTATCTTTCAACCATCGT
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGT
** *
11806000 CTTATTCATTTTCCCGTCATGTTGCCATG
65 CTTATTCA-TTTCATGTCAGGTTGCCATG
* * * *
11806029 GTATCTTTCAACCATGGTCTTATTCATTTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGT
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTGCCATGGTATCTTTCAACCATGGT
*
11806094 CTTACTCATTTCATGTCAGGTTGCCATG
65 CTTATTCATTTCATGTCAGGTTGCCATG
*
11806122 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATC-TT---CCATGGTC
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
* *
11806183 TTATTCATTTCATATCACGTTGCCATG
66 TTATTCATTTCATGTCAGGTTGCCATG
* *
11806210 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCCTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
** *
11806275 TTATTCATTTTCCCGTCATGTTGCCATG
66 TTATTCA-TTTCATGTCAGGTTGCCATG
* *
11806303 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATGTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
** * *
11806368 TTACACATTTCATATCAGGTTGCCTTG
66 TTATTCATTTCATGTCAGGTTGCCATG
* *
11806395 GTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCA
11806431 GAGAGCACAC
Statistics
Matches: 361, Mismatches: 34, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
88 81 0.22
89 2 0.01
91 2 0.01
92 86 0.24
93 151 0.42
94 39 0.11
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (92 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
TTATTCATTTCATGTCAGGTTGCCATG
Found at i:11806369 original size:227 final size:228
Alignment explanation
Indices: 11805973--11806401 Score: 716
Period size: 227 Copynumber: 1.9 Consensus size: 228
11805963 TTTCTGTCAT
** * * * *
11805973 GTTGCCATGGTATCTTTCAACCATCGTCTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTC
1 GTTGCCATGGTATCTTTCAACCATCGTCTTACACATTTTCACATCACGTTGCCATGGTATCCTTC
*
11806038 AACCATGGTCTTATTCATTTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCAT
66 AACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCAT
* **
11806103 TTCATGTCAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
131 TTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
11806168 GTATCTTCCATGGTCTTATTCATTTCATATCAC
196 GTATCTTCCATGGTCTTATTCATTTCATATCAC
* *
11806201 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCACGTTGCCATGGTATCCTTC
1 GTTGCCATGGTATCTTTCAACCATCGTCTTACACATTTTCACATCACGTTGCCATGGTATCCTTC
11806265 AACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCAT
66 AACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCAT
* * *
11806330 TTCATATCAGGTTGCCATGGTATGTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCTTG
131 TTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
11806395 GTATCTT
196 GTATCTT
11806402 TCAACCATGG
Statistics
Matches: 186, Mismatches: 15, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
227 154 0.83
228 32 0.17
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (228 bp):
GTTGCCATGGTATCTTTCAACCATCGTCTTACACATTTTCACATCACGTTGCCATGGTATCCTTC
AACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCAT
TTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
GTATCTTCCATGGTCTTATTCATTTCATATCAC
Found at i:11808819 original size:50 final size:50
Alignment explanation
Indices: 11808744--11808892 Score: 246
Period size: 50 Copynumber: 3.0 Consensus size: 50
11808734 CCATGGAAAC
11808744 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
11808794 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
11808844 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATG
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATG
11808893 GCAAATGACA
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 88 0.98
51 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:11808943 original size:31 final size:31
Alignment explanation
Indices: 11808905--11809113 Score: 328
Period size: 31 Copynumber: 6.7 Consensus size: 31
11808895 AAATGACAAC
* *
11808905 TGAAAAGTGGTAACTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
11808936 TGAAAAGTGGTAGCTTCTGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
11808967 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
11808998 TGAAAATTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
11809029 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
** *
11809060 TGAAAAGTGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
11809091 TGAATAGTGGTAGCTTTGGCTAC
1 TGAAAAGTGGTAGCTTCGGCTAC
11809114 AAGTGACAAG
Statistics
Matches: 165, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 165 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Found at i:11809124 original size:7 final size:7
Alignment explanation
Indices: 11809112--11809140 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
11809102 AGCTTTGGCT
11809112 ACAAGTG
1 ACAAGTG
11809119 ACAAGTG
1 ACAAGTG
11809126 ACAAGTG
1 ACAAGTG
11809133 ACAAGTG
1 ACAAGTG
11809140 A
1 A
11809141 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:11810975 original size:7 final size:8
Alignment explanation
Indices: 11810960--11810985 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
11810950 AGTCCGGAAT
11810960 ATAAAAAA
1 ATAAAAAA
11810968 ATAAAAAA
1 ATAAAAAA
11810976 ATAAAAAA
1 ATAAAAAA
11810984 AT
1 AT
11810986 TCTTGATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (8 bp):
ATAAAAAA
Found at i:11813369 original size:50 final size:50
Alignment explanation
Indices: 11813294--11813441 Score: 237
Period size: 50 Copynumber: 3.0 Consensus size: 50
11813284 CCATGGAAAC
11813294 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
11813344 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
11813394 AAGTGATAAGTGATAGCTTCGG-TACACTTATCTGATCAATGG-CAAATG
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATG
11813442 GCAAATGACA
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
49 21 0.24
50 68 0.76
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:11813692 original size:31 final size:31
Alignment explanation
Indices: 11813454--11813692 Score: 354
Period size: 31 Copynumber: 7.7 Consensus size: 31
11813444 AAATGACAAC
*
11813454 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
11813485 TGAAAAGT-GTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
11813515 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
11813546 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
11813577 TGAAAATTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
11813608 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* ** *
11813639 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
11813670 TGAATAGTGGTAGCTTTGGCTAC
1 TGAAAAGTGGTAGCTTCGGCTAC
11813693 AAGTGACAAG
Statistics
Matches: 189, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
30 29 0.15
31 160 0.85
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Done.