Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 40 of 345
Found at i:11813703 original size:7 final size:7
Alignment explanation
Indices: 11813691--11813719 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
11813681 AGCTTTGGCT
11813691 ACAAGTG
1 ACAAGTG
11813698 ACAAGTG
1 ACAAGTG
11813705 ACAAGTG
1 ACAAGTG
11813712 ACAAGTG
1 ACAAGTG
11813719 A
1 A
11813720 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:11813810 original size:47 final size:49
Alignment explanation
Indices: 11813723--11813846 Score: 134
Period size: 47 Copynumber: 2.6 Consensus size: 49
11813713 CAAGTGATTT
* *
11813723 CTGTATAAGACCATATCTGGGATAT-AGCATCGTTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGAGCATCGGTGAGATATATGACTA
* *
11813770 CTGTATAAGACCATATCTGGGATATGA-CAT-GAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGAGCATCG-GTGAGATATATGACTA
* * *
11813818 C-GTGTAAGACCATAGCTGGGCTATG-GCAT
1 CTGTATAAGACCATATCTGGGATATGAGCAT
11813847 TATTATGTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
46 1 0.02
47 61 0.92
48 4 0.06
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (49 bp):
CTGTATAAGACCATATCTGGGATATGAGCATCGGTGAGATATATGACTA
Found at i:11818013 original size:25 final size:26
Alignment explanation
Indices: 11817980--11818039 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
11817970 AACTATTTAT
*
11817980 AAATTTTAATAT-A-TATTTATTACTA
1 AAATATTAATATAATTATTT-TTACTA
*
11818005 AAATATTAATATAATTATTTTTAGTA
1 AAATATTAATATAATTATTTTTACTA
*
11818031 ATATATTAA
1 AAATATTAA
11818040 GAATATCATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 11 0.37
26 14 0.47
27 5 0.17
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
AAATATTAATATAATTATTTTTACTA
Found at i:11818064 original size:20 final size:22
Alignment explanation
Indices: 11818036--11818080 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
11818026 TAGTAATATA
*
11818036 TTAAGAATATCA-T-TTAAAAT
1 TTAAAAATATCATTGTTAAAAT
*
11818056 TTAAAAATATTATTGTTAAAAT
1 TTAAAAATATCATTGTTAAAAT
11818078 TTA
1 TTA
11818081 TTACTAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 1 0.05
22 10 0.48
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (22 bp):
TTAAAAATATCATTGTTAAAAT
Found at i:11819703 original size:6 final size:7
Alignment explanation
Indices: 11819687--11819712 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
11819677 AGTCCATAAG
11819687 TTTTTCT
1 TTTTTCT
11819694 TTTTTCT
1 TTTTTCT
11819701 TTTTTCT
1 TTTTTCT
11819708 TTTTT
1 TTTTT
11819713 AAATATGGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:11822881 original size:5 final size:5
Alignment explanation
Indices: 11822873--11822901 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
11822863 GAAAGGCAAG
11822873 GGTTT GGTTT GGTTT GGTTT GGTTT GGTT
1 GGTTT GGTTT GGTTT GGTTT GGTTT GGTT
11822902 ATATATAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.41, T:0.59
Consensus pattern (5 bp):
GGTTT
Found at i:11823432 original size:21 final size:20
Alignment explanation
Indices: 11823408--11823459 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
11823398 TTATGCCACA
*
11823408 TCAGTATTCTTATTCTGAATT
1 TCAGTATT-TTATCCTGAATT
*
11823429 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
*
11823449 TTAGTATTTTA
1 TCAGTATTTTA
11823460 ATTTAGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.52
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:11826183 original size:15 final size:16
Alignment explanation
Indices: 11826156--11826197 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
11826146 AACTTAAAAC
*
11826156 CACTTAACTTTTT-AA
1 CACTTAATTTTTTCAA
*
11826171 TACTTAATTTTTTCAA
1 CACTTAATTTTTTCAA
*
11826187 CAGTTAATTTT
1 CACTTAATTTT
11826198 CATTTTATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.31, C:0.14, G:0.02, T:0.52
Consensus pattern (16 bp):
CACTTAATTTTTTCAA
Found at i:11830653 original size:57 final size:54
Alignment explanation
Indices: 11830544--11830654 Score: 134
Period size: 57 Copynumber: 2.0 Consensus size: 54
11830534 TTTTTTGGGG
* ** *
11830544 GGAGAAAGTTATTGTAAAGGATTTTTTGGAGAGGTTTCTTTTGAGAGTAATTAA
1 GGAGAAAGTTATTGTAAAGGAATTTTTGGAGAGGTAACTTTTGAGAGAAATTAA
*
11830598 GGAGAAGAGTTATTGTAAAGGCTAATTTTTGGAGAGGCTAAGTTTTGA-AGAAATTAA
1 GGAGAA-AGTTATTGTAAAGG--AATTTTTGGAGAGG-TAACTTTTGAGAGAAATTAA
11830655 TCAAATATCA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
54 6 0.12
55 14 0.29
57 21 0.44
58 7 0.15
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (54 bp):
GGAGAAAGTTATTGTAAAGGAATTTTTGGAGAGGTAACTTTTGAGAGAAATTAA
Found at i:11835770 original size:72 final size:72
Alignment explanation
Indices: 11835666--11835801 Score: 254
Period size: 72 Copynumber: 1.9 Consensus size: 72
11835656 TTTATTTTTC
*
11835666 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTA
11835731 TCATAAA
66 TCATAAA
*
11835738 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTT
11835802 CTGCTCACAT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTA
TCATAAA
Found at i:11835859 original size:58 final size:58
Alignment explanation
Indices: 11835747--11835862 Score: 171
Period size: 58 Copynumber: 2.0 Consensus size: 58
11835737 AAAAAATCAA
* * * *
11835747 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTAAGTTGAGCCTCAAGACACGCTGAGATATTTTCAATTTCTG
*
11835805 CTCACATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGATAATTTT-AATTTCTG
1 CTCACATTGCGAGAGGTAAGTTGAGCCTCAAGACACGCTGAGAT-ATTTTCAATTTCTG
11835863 TTTTTTAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
58 47 0.90
59 5 0.10
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (58 bp):
CTCACATTGCGAGAGGTAAGTTGAGCCTCAAGACACGCTGAGATATTTTCAATTTCTG
Found at i:11836271 original size:14 final size:14
Alignment explanation
Indices: 11836252--11836280 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
11836242 CGCTGAGGTA
11836252 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
11836266 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
11836280 T
1 T
11836281 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:11836336 original size:86 final size:84
Alignment explanation
Indices: 11836111--11836479 Score: 399
Period size: 85 Copynumber: 4.5 Consensus size: 84
11836101 TATGTTTAAA
* * **
11836111 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTTTTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACG-CGAGGTATTTTCAATT
*
11836176 TCTGTTTTTCAAATTATTTTTC
63 TCTGTTTTTCAAATTATTTGTC
* * * *
11836198 AAAAACCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC-GAGGTATTTTCAATTTC
* *
11836263 TGTTTTTCAATTTCTGTTCGTC
65 TGTTTTTCAAATTAT-TT-GTC
11836285 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCAGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC-GAGGTATTTTCAATTTC
11836349 TG----------T-TTT-TC
65 TGTTTTTCAAATTATTTGTC
*
11836357 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CACGCTGAGGTATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGC-GAGGTATTTTCAATTT
* * *
11836421 TTGTGTTTT-AATTTATTTTTC
64 CTGT-TTTTCAAATTATTTGTC
*
11836442 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
11836480 AAGTCACATT
Statistics
Matches: 245, Mismatches: 20, Indels: 36
0.81 0.07 0.12
Matches are distributed among these distances:
72 2 0.01
73 59 0.24
74 5 0.02
75 1 0.00
76 1 0.00
83 1 0.00
84 4 0.02
85 69 0.28
86 63 0.26
87 40 0.16
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (84 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCGAGGTATTTTCAATTTCT
GTTTTTCAAATTATTTGTC
Found at i:11836338 original size:246 final size:244
Alignment explanation
Indices: 11835949--11836977 Score: 765
Period size: 246 Copynumber: 4.3 Consensus size: 244
11835939 GTCTTTCAAA
*
11835949 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTATTTTAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAAT
*
11836013 TTCTGTTTCTCAATTCATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAG
63 TTCTGTTTCTCAATTCATGTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAG
* * * *
11836078 GTCATGCTGAGGTATTTTCGATCTATGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
127 GACACGCAGAGGTATTTTCAATCTATGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
11836143 AGCCTC-GGGTCACATG-TCGAGGTTTTTTCAAAATCTGT-TTTTCAAATTATTTTTC
192 AGCCTCAGGG-CAC--GCT-GAGGTATTGTCAAAATCTGTGTTTT-AAATTATTTTTC
* *
11836198 AAAAACCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGGAT-ACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACGCTGAGGTATTTTCAATTT
* * *
11836262 CTGTTTTTCAATTTC-TGTTCGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
65 CTGTTTCTCAA-TTCATGTT-GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGG
* * ***
11836325 ACACGCAGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
128 ACACGCAGAGGTATTTTCAATCTATGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * *
11836390 GCCTCAGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATTTTTC
193 GCCTCAGGGCACGCTGAGGTATTGTCAAAATCTGTGTTTTAAATTATTTTTC
* * **
11836442 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAA----
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTC
* *
11836503 --TTTATC-A-TCA-------AAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GTTT
66 TGTTTCTCAATTCATGTTGTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCATCAG---
* * ** * * * *
11836556 CACATGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTCAGT
127 GACACGCAGAGGTATTTTCAA--TCTATGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * *
11836621 TGAGCCTCAGGACACGCTGAGGTAATT-TC--AA----TG---T---TTGTTTGTC
190 TGAGCCTCAGGGCACGCTGAGGT-ATTGTCAAAATCTGTGTTTTAAATTATTTTTC
* * *
11836664 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG-TCGAGGTATTTCCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT-GAGGTATTTTCAATTT
* * *
11836728 CTGTCTT-TCAA---A-------AAAAATTAACTCATATTGCGAGAGGTGAGTTGAACCTCA--A
65 CTGT-TTCTCAATTCATGTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGA
* * * * *
11836780 GACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGCATAAAAAAATCAACTCATATTGC
129 CACGCAGAGGTATTTT-CA------ATC-T--ATGT-T-T--A-AAAAAAATCAACTCATATTGC
* * * * * *
11836845 GAGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTA-T-T-----TC--TG-TTCAATTTATGTTT
179 GAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTGTCAAAATCTGTGTTTTAAATTA--TTT
11836900 TTC
242 TTC
* *
11836903 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTC
*
11836968 TGTTTTTCAA
66 TGTTTCTCAA
11836978 AAATTAACTC
Statistics
Matches: 659, Mismatches: 69, Indels: 114
0.78 0.08 0.14
Matches are distributed among these distances:
221 1 0.00
222 75 0.11
223 2 0.00
225 1 0.00
226 31 0.05
227 8 0.01
228 6 0.01
229 8 0.01
230 36 0.05
231 1 0.00
232 20 0.03
233 2 0.00
234 60 0.09
235 56 0.08
237 3 0.00
238 7 0.01
239 72 0.11
240 1 0.00
243 1 0.00
244 80 0.12
245 5 0.01
246 102 0.15
247 35 0.05
248 5 0.01
249 38 0.06
250 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (244 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTC
TGTTTCTCAATTCATGTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACA
CGCAGAGGTATTTTCAATCTATGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCAGGGCACGCTGAGGTATTGTCAAAATCTGTGTTTTAAATTATTTTTC
Found at i:11836384 original size:73 final size:73
Alignment explanation
Indices: 11836266--11838035 Score: 619
Period size: 73 Copynumber: 23.3 Consensus size: 73
11836256 CAATTTCTGT
** **
11836266 TTTTCAATTTCTGTTCGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
11836330 CAGAGGTA
66 CTGAGGTA
* *
11836338 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
11836403 CTGAGGTA
66 CTGAGGTA
* * *
11836411 TTGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAG
1 TTTTCAA--TTTCTG----------TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* **
11836476 CCTCAAGTCACATTGAGGTA
54 CCTCAAGACACGCTGAGGTA
* ** ***
11836496 TTTTCAA-TT-T-ATCATCAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGTTTCA
1 TTTTCAATTTCTGTTTTTC-AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--AAGA
* *
11836558 CATGTTGAGGTA
62 CACGCTGAGGTA
* *
11836570 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTCAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
11836635 CGCTGAGGTA
64 CGCTGAGGTA
* *
11836645 ATTTCAATGTT-TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAAT-TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
11836709 G-TCGAGGTA
65 GCT-GAGGTA
* * * *
11836718 TTTCCAATTTCTGTCTTTCAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG--
1 TTTTCAATTTCTGTTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
*
11836781 ACGCTGAGGTG
63 ACGCTGAGGTA
* * ** * * * * *
11836792 TTTTCCATTTCTGTTCTTCAATTTCTGTGCATAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGA
1 TTTTCAATTTCTGTTTTTCAA---------A-AATCAACTCATATTGCGAGA--G-GTGAGTTGA
** * * **
11836854 G--TTGAG-C-CTC-AAGACA
53 GCCTCAAGACACGCTGAGGTA
* * *
11836870 TGTTGAGGTATTTCTGTTCAATTTATGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTG
1 TTTTCA---A----T-TTC------TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
11836935 AGCCTCAGGACACGCTGAGGTA
52 AGCCTCAAGACACGCTGAGGTA
* ** *
11836957 TTTTCAATTTCTGTTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
11837022 CTGAGGTA
66 CTGAGGTA
* *
11837030 TTGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAA--TTTCTG----------TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* ***
11837095 CCTCAAGTCATATTGAGGTA
54 CCTCAAGACACGCTGAGGTA
* ** ***
11837115 TTTTCAATTTAT-CATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
11837179 TTGAGGTA
66 CTGAGGTA
* *** * * * * *** ** * *
11837187 TTTTCAATTTCTG---CTCACATTGTGAGAGGTGAGT-TGAGCCTCAGGACACGCTGAG-GT-AA
1 TTTTCAATTTCTGTTTTTCA-AAAATCA-A-CTCA-TAT-TGCGAGAGGTGA-GTTGAGCCTCAA
* ** ** *
11837246 TTTTA-ATTTCT-ATTTTT
60 ---GACA-CGCTGA-GGTA
* ** * * * * ** * ** * *** * * * ***
11837263 TTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAAGACACGTTGAGGT-ATTTTC
1 TTTT--CAAT-TTCT-GTTTTTC-AAAAATCAACTCATATTGC--GAGA-GGTGAGTTGAGCCTC
***
11837326 -A-A-TTTCT---GT-
58 AAGACACGCTGAGGTA
* ****** **
11837335 CTTTCAA--AAAAAATTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
11837398 TTGAGGTA
66 CTGAGGTA
* * * *
11837406 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTC
1 TTTTCAATTTCTGTTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
*
11837471 ATGCTGAGGTA
63 ACGCTGAGGTA
* * * * * ***
11837482 TTTTC--GTTCTATGTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTTGGGTCA
1 TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--A
*
11837545 CATG-TCGAGGTA
62 CACGCT-GAGGTA
* * *
11837557 TTTTCAAAATCTGTTTTTTAAATTATTTTTCAAAAACCAAC-CATATTGCGAGAGGTGAGTTGAG
1 TTTTC--AA-------TTT---CTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
11837621 CCTCAGGACACGCTGAGGTA
54 CCTCAAGACACGCTGAGGTA
* ** *
11837641 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCCTCGGGGCACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
11837706 CTAAGGTA
66 CTGAGGTA
* * * *
11837714 TTGTCAATTTTTGTCTTTTAATTTATTTTTCAAAAATCAACTCATATTACGATAGGTGAGTTGAG
1 TTTTCAA---TT-TC--------TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* **
11837779 CCTCAAGTCACATTGAGGTA
54 CCTCAAGACACGCTGAGGTA
* ** *** * * *
11837799 TTTTCAATTTAT-CATAAAAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
11837863 CTGAGGTA
66 CTGAGGTA
* * *
11837871 ATTTCAA----TGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
11837932 TTGAGGTA
66 CTGAGGTA
* * *
11837940 TTTCCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
1 TTTTCAATTTCTGTTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
*
11838005 CA--CTGAGGTG
62 CACGCTGAGGTA
* *
11838015 TTTTCCATTTCTGTTATTCAA
1 TTTTCAATTTCTGTTTTTCAA
11838036 TTTCTGTGTT
Statistics
Matches: 1278, Mismatches: 264, Indels: 313
0.69 0.14 0.17
Matches are distributed among these distances:
63 6 0.00
64 6 0.00
65 8 0.01
66 6 0.00
67 2 0.00
68 1 0.00
69 55 0.04
70 9 0.01
71 18 0.01
72 190 0.15
73 282 0.22
74 58 0.05
75 84 0.07
76 109 0.09
77 80 0.06
78 16 0.01
79 12 0.01
80 6 0.00
81 26 0.02
82 23 0.02
83 13 0.01
84 20 0.02
85 183 0.14
86 33 0.03
87 16 0.01
89 7 0.01
92 9 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
CTGAGGTA
Found at i:11836910 original size:619 final size:614
Alignment explanation
Indices: 11835871--11838345 Score: 2298
Period size: 619 Copynumber: 3.9 Consensus size: 614
11835861 TGTTTTTTAA
* *
11835871 AAAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACGTTGAGGTATTTTCAATT
* *
11835936 TCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACGTGCTG
66 TCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTG
* * *
11836000 AGGTATTTTAAATTTCTGTTTCTCAATTCATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTG
127 AGGTAATTTCAA--T-TG-TT-T--GTT--TG---TC-AAAAATCAACTCATATTGCGAGAGGTG
* * * * * * * *
11836065 AGTTGAGCATCAGGTCATG-CTGAGGTATTTTCGA--TCTATGTTT-AAAAAAAATCAACTCATA
179 AGTTGAGCCTCAAGACACGTC-GAGGTATTTCCAATTTCTGTCTTTCAAAAAAAATCAACTCATA
* ** * ** *
11836126 TTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTTTTTTCAAAATCTGTTTTTCAAAT
243 TTGCGAGAGGTGAGTTGAACCTCAAG-CAC--GCT-GAGGTGTTTTCAATTTCTG-TTTTCAATT
* **** * * * * *
11836190 TATTTTTCAAAAACCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGCTGAGGTATTT
303 TCTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGG-----
* ** *
11836255 TCAATTTCTGTTTTTCAATTTCTGTTCGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
363 T--ATTT-TG---TTCAATTTATGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGC
* *
11836319 CTCGGGACACGCAGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
422 CTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
11836384 AGTTGAGCCTCAGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATC
487 AGTTGAGCCTCAGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATC
*
11836449 AACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTTATCATC
552 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTTATCATC
* ** *
11836512 AAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGTTTCACATGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--AACACACGTTGAGGTATTTTCAA
*
11836577 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTCAGTTGAGCCTCAGGACACGCTGAG
64 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
11836642 GTAATTTCAA-TGTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
129 GTAATTTCAATTGTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
*
11836706 CACGTCGAGGTATTTCCAATTTCTGTCTTTCAAAAAAAATTAACTCATATTGCGAGAGGTGAGTT
194 CACGTCGAGGTATTTCCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
11836771 GAACCTCAAG-ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGCATAAAAAAATCAA
259 GAACCTCAAGCACGCTGAGGTGTTTTCAATTTCTGTT-TTCAATTTCT-T-CA-AAAAAAATCAA
*
11836835 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTATTTCTGTTCAATTTATGTTT
320 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTT-TGTTCAATTTATGTTT
11836900 TTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAT
384 TTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAT
* *
11836965 TTCTGTTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA
449 TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
11837030 TTGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
514 TTGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
11837095 CCTCAAGTCATATTGAGGTATTTTCAATTTATCATC
579 CCTCAAGTCACATTGAGGTATTTTCAATTTATCATC
*
11837131 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACGTTGAGGTATTTTCAATT
*
11837196 TCTG-----C-------TC-A--C--ATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
66 TCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
* * * * *
11837244 AATTTTAATTTCTATTTTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
131 AATTTCAA-TTGT-TTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
* *
11837309 CACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATTAAAAAAATCAACTCATATTGCGAG
194 CACGTCGAGGTATTTCCAATTTCTGTCTTTC-------A--AAAAAAATCAACTCATATTGCGAG
* * *
11837374 AGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG---TC----T-TTCAAAAAA
250 AGGTGAGTTGAACCTCAAG-CACGCTGAGGTGTTTTCAATTTCTGTTTTCAATTTCTTCAAAAAA
* * *
11837431 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCATGCTGAGGTATTTTCGTTC----T
314 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTT-GTTCAATTT
*** * ** *
11837492 ATGTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTTGGGTCACATG-TCGAGGT
378 ATGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGT
* * *
11837556 ATTTTCAAAATCTGTTTTTTAAATTATTTTTCAAAAACCAAC-CATATTGCGAGAGGTGAGTTGA
440 ATTTTC--AA-------TTT---CTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
11837620 GCCTCAGGACACGCTGAGGTATTTTCAA--TTTCTG----------TTTTTCAAAAATCAACTCA
493 GCCTCAGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCA
* ** * ** * * * *
11837673 TATTGCGAGAGGTGATTTGAGCCTCGGGGCACGCTAAGGTATTGTCAATTTTTGTCTTTTAATTT
558 TATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAA--TTTATC-----A-TC
* * * ** *
11837738 ATTTTTCAAAAATCAACTCATATTACGATAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTT
1 A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACGTTGAGGTATTTT
* ** * * *
11837803 CAA-TT-T-ATCATAAAAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACT
61 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
*
11837865 GAGGTAATTTCAA-----TGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCA
126 GAGGTAATTTCAATTGTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
11837925 AGACACGTTGAGGTATTTCCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTG
191 AGACACGTCGAGGTATTTCCAATTTCTGTCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTG
* *
11837990 AGTTGAACCTCAAG-ACACTGAGGTGTTTTCCATTTCTGTTATTCAATTTCTGTGTTTCAAAAAA
255 AGTTGAACCTCAAGCACGCTGAGGTGTTTTCAATTTCTGTT-TTCAATTTC-----TTCAAAAAA
* * * ** ** *
11838054 AATTAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCATACGCTGAGGTA--TT-TTCAAAT
314 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAT--GCTGAGGTATTTTGTTCAATT
* *
11838116 TATGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAG----AGGACACGCTGAGG
377 TATGTTTTT-C--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
11838177 TATTTTCAATTTCTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGT
439 TATTTTCAA----------TTTC------TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGT
* * * *
11838242 GAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTGATGTT-TTTTTTCAATTTATGCTTT
486 GAGTTGAGCCTCAGG--GCACGCTGAGGTATTGTCAATT--T-TTGTGTTTT-AATTTAT--TTT
* *
11838306 GCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
543 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
11838346 GGGTCATATA
Statistics
Matches: 1561, Mismatches: 144, Indels: 251
0.80 0.07 0.13
Matches are distributed among these distances:
598 45 0.03
599 59 0.04
600 59 0.04
601 6 0.00
602 64 0.04
603 79 0.05
604 2 0.00
605 3 0.00
606 2 0.00
607 2 0.00
609 28 0.02
610 4 0.00
611 91 0.06
612 114 0.07
613 4 0.00
614 21 0.01
617 26 0.02
618 14 0.01
619 335 0.21
620 2 0.00
621 12 0.01
622 16 0.01
623 56 0.04
624 5 0.00
625 40 0.03
626 105 0.07
627 5 0.00
628 93 0.06
629 70 0.04
630 2 0.00
631 19 0.01
632 2 0.00
634 1 0.00
635 4 0.00
636 4 0.00
640 14 0.01
641 38 0.02
642 42 0.03
643 32 0.02
646 1 0.00
648 40 0.03
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (614 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACGTTGAGGTATTTTCAATT
TCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
AATTTCAATTGTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGTCGAGGTATTTCCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
ACCTCAAGCACGCTGAGGTGTTTTCAATTTCTGTTTTCAATTTCTTCAAAAAAAATCAACTCATA
TTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTGTTCAATTTATGTTTTTCAAAA
ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTT
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTGTCAA
TTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
TCACATTGAGGTATTTTCAATTTATCATC
Found at i:11836936 original size:312 final size:303
Alignment explanation
Indices: 11836496--11838188 Score: 1469
Period size: 312 Copynumber: 5.5 Consensus size: 303
11836486 CATTGAGGTA
* * ***
11836496 TTTTCAATTTATCATCAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGTTTCACAT
1 TTTTCAATTTTTCAT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--AAGACAT
* *
11836561 GTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTCAGTTGAGC
63 GTTGAGGTATTTTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
11836626 CTCAGGACACGCTGAGGTAATTTCAATGTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTG
126 CTCAGGACACGCTGAGGTAATTTCAAT-TTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
*
11836691 AGTTGAGCCTCAAGACACGTCGAGGTATTTCCAATTTCTGTCTTTCAAAAAAAATTAACTCATAT
190 AGTTGAGCCTCAAGACACGTCGAGGTATTTCCAATTTCTGTCTTTCAAAAAAAATCAACTCATAT
* * *
11836756 TGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTG
255 TGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCTG
11836805 TTCTTCAATTTCTGTGCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TT-TTCAATTT-T-T-CATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
11836870 TGTTGAGGTATTTCTGTTCAATTTATGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTG
62 TGTTGAGGTA--T-T-TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
11836935 AGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAATTAACTCATATTGCGAGAG
123 AGCCTCAGGACACGCTGAGGTAATTTCAATTT-TGTTTTTCAAAAATCAACTCATATTGCGAGAG
** * * * *
11837000 GTGAGTTGAGCCTCGGGGCACG-CTGAGGTATTGT-CAATTTTTGTGTTTTAATTTATTTTTCAA
187 GTGAGTTGAGCCTCAAGACACGTC-GAGGTATT-TCCAATTTCTGTCTTTCAA---A------AA
***
11837063 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCATATTGAGGTATTTTCAA----T-
241 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACGCTGAGGTATTTTCAATTTCTG
* *
11837123 TTATC-A----TC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
1 TTTTCAATTTTTCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGTT
* *
11837181 GAGGTATTTTCAATTTCTG-----C-----TC-A--C--ATTGTGAGAGGTGAGTTGAGCCTCAG
66 GAGGTATTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* * *
11837231 GACACGCTGAGGTAATTTTAATTTCTATTTTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAG
131 GACACGCTGAGGTAATTTCAA--T-T-TTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
* *
11837296 TTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATTAAAAAAATCAA
192 TTGAGCCTCAAGACACGTCGAGGTATTTCCAATTTCTGTCTTTC-------A--AAAAAAATCAA
*
11837361 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
248 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACGCTGAGGTATTTTCAATTTCTG
* * * *
11837419 ---TC----TTTCA-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCATGCT
1 TTTTCAATTTTTCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGTT
* *** * * **
11837476 GAGGTATTTTC-GTTCTATGTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTTG
66 GAGGTATTTTCAATT-TATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * * *
11837540 GGTCACATG-TCGAGGTATTTTCAAAATCTGTTTTTTAAATTATTTTTCAAAAACCAAC-CATAT
130 GG--ACACGCT-GAGGTAATTTC--AA--------TT---TTGTTTTTCAAAAATCAACTCATAT
* * *
11837603 TGCGAGAGGTGAGTTGAGCCTCAGGACACG-CTGAGGTATTTTCAATTTCTGTTTTTC---AAAA
179 TGCGAGAGGTGAGTTGAGCCTCAAGACACGTC-GAGGTATTTCCAATTTCTGTCTTTCAAAAAAA
* ** * * *
11837664 ATCAACTCATATTGCGAGAGGTGATTTGAGCCTCGGGGCACGCTAAGGTATTGTCAATTTTTG
243 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AAG-ACGCTGAGGTATTTTCAATTTCTG
* * ** * * * **
11837727 TCTTTTAATTTATT-TTTCAAAAATCAACTCATATTACGATAGGTGAGTTGAGCCTCAAGTCACA
1 T-TTTCAATTT-TTCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATG
** *** *
11837791 TTGAGGTATTTTCAATTTAT-CATAAAAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTC
64 TTGAGGTATTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * *
11837855 AGGACACACTGAGGTAATTTCAA---TGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTT
129 AGGACACGCTGAGGTAATTTCAATTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
11837917 GAGCCTCAAGACACGTTGAGGTATTTCCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGC
194 GAGCCTCAAGACACGTCGAGGTATTTCCAATTTCTGTCTTTC-AAAAAAAATCAACTCATATTGC
* * * *
11837982 GAGAGGTGAGTTGAACCTCAAGACACTGAGGTGTTTTCCATTTCTG
258 GAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCTG
* * * ** *
11838028 TTATTCAATTTCTGTGTTTCA-AAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGAC
1 TT-TTCAA----T-T-TTTCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
* * *
11838092 TCATACGCTGAGGTATTTTCAAATTATGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGA
59 ACAT--GTTGAGGTATTTTCAATTTATGTTTTT-C--AAAAATCAACTCATATTGCGAGAGGTGA
* *
11838157 GTTCAG----AGGACACGCTGAGGTATTTTCAATTT
119 GTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
11838189 CTTTTTTTTT
Statistics
Matches: 1134, Mismatches: 139, Indels: 220
0.76 0.09 0.15
Matches are distributed among these distances:
288 43 0.04
290 3 0.00
291 127 0.11
292 2 0.00
293 4 0.00
294 4 0.00
295 60 0.05
297 1 0.00
298 17 0.01
299 56 0.05
300 2 0.00
301 23 0.02
302 1 0.00
303 46 0.04
304 1 0.00
305 4 0.00
306 40 0.04
307 56 0.05
308 98 0.09
309 5 0.00
310 44 0.04
311 4 0.00
312 219 0.19
313 5 0.00
314 31 0.03
315 2 0.00
316 41 0.04
317 59 0.05
318 4 0.00
319 2 0.00
320 61 0.05
321 56 0.05
323 13 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (303 bp):
TTTTCAATTTTTCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGTT
GAGGTATTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
GACACGCTGAGGTAATTTCAATTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAAGACACGTCGAGGTATTTCCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCTG
Found at i:11837112 original size:158 final size:157
Alignment explanation
Indices: 11836897--11837196 Score: 429
Period size: 158 Copynumber: 1.9 Consensus size: 157
11836887 TCAATTTATG
* *
11836897 TTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 TTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTC
* ** *** * ** *
11836962 AATTTCTGTTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
66 AATTTAT-CATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
11837027 GTATTGTCAATTTTTGTGTTTTAATTTA
130 GTATTGTCAATTTTTGTGTTTTAATTTA
* * * *
11837055 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCATATTGAGGTATTTTC
1 TTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTC
*
11837120 AATTTATCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
66 AATTTATCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
*
11837185 TATTTTCAATTT
131 TATTGTCAATTT
11837197 CTGCTCACAT
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
157 59 0.48
158 65 0.52
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (157 bp):
TTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTC
AATTTATCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
TATTGTCAATTTTTGTGTTTTAATTTA
Found at i:11837165 original size:72 final size:72
Alignment explanation
Indices: 11837061--11837196 Score: 245
Period size: 72 Copynumber: 1.9 Consensus size: 72
11837051 TTTATTTTTC
* *
11837061 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCATATTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTA
11837126 TCATCAA
66 TCATCAA
*
11837133 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTT
11837197 CTGCTCACAT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTA
TCATCAA
Found at i:11837242 original size:58 final size:58
Alignment explanation
Indices: 11837142--11837256 Score: 178
Period size: 58 Copynumber: 2.0 Consensus size: 58
11837132 AAAAAATCAA
* *
11837142 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTT-AATTTCTG
* *
11837200 CTCACATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTCT
1 CTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTAATTTCT
11837257 ATTTTTTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
58 47 0.90
59 5 0.10
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (58 bp):
CTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTAATTTCTG
Found at i:11837363 original size:85 final size:77
Alignment explanation
Indices: 11837348--11838190 Score: 560
Period size: 73 Copynumber: 10.9 Consensus size: 77
11837338 TCAAAAAAAA
*
11837348 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA
1 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAA
11837413 TTTCTGTCTTTC
66 TTTCTGTCTTTC
* * * * *
11837425 -AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCATGCTGAGGTATTTTC--
1 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAA
* * *
11837487 GTTCTATGTTTC
66 TTTCTGTCTTTC
* * ** * *
11837499 --AAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTTGGGTCACATGTCGAGGTATTTTC
1 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGTTGAGGTATTTTC
** * *
11837562 AAAATCTGTTTTTTAAA
64 AATTTCTG-TCTTT--C
* * *
11837579 TTATTTTTCAAAAACCAAC-CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
1 TTA-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATT
11837643 TTCAATTTCTG--TTT-
61 TTCAATTTCTGTCTTTC
* * * * * * *
11837657 TT-CAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCCTCGGGGCACGCTAAGGTATTGTCAA
1 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAA
* *
11837721 TTTTTGTCTTTTAAT
66 TTTCTGTC-TTT--C
* * * * * *
11837736 TTATTTTTCAAAAATCAACTCATATTACGATAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATT
1 TTA-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATT
* *
11837801 TTCAA-TT-TATC---A
61 TTCAATTTCTGTCTTTC
* * ** *
11837813 TAAAAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAA
1 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAA
11837878 ----TGT-TTGTC
66 TTTCTGTCTT-TC
* * *
11837886 ----AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTCCAA
1 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAA
11837947 TTTCTGTCTTTC
66 TTTCTGTCTTTC
** * * * *
11837959 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC--TGAGGTGTTTTCCA
1 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAA
11838022 TTTCTGTTATTCAATTTC
66 TTTCTG----TC--TTTC
* * * * ** * *
11838040 TGTGTTTCAAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCATACGCTGAGG
1 -----TT-AAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGTTGAGG
* * *
11838105 TATTTTCAAATTATGTTTTTC
57 TATTTTCAATTTCTGTCTTTC
* * *
11838126 -CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAG----AGGACACGCTGAGGTATTTTCAA
1 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAA
11838186 TTTCT
66 TTTCT
11838191 TTTTTTTTCA
Statistics
Matches: 611, Mismatches: 98, Indels: 119
0.74 0.12 0.14
Matches are distributed among these distances:
69 54 0.09
70 2 0.00
72 86 0.14
73 96 0.16
74 11 0.02
75 32 0.05
76 59 0.10
77 48 0.08
78 32 0.05
79 10 0.02
81 7 0.01
82 1 0.00
83 3 0.00
84 23 0.04
85 52 0.09
86 30 0.05
87 15 0.02
88 29 0.05
89 2 0.00
90 3 0.00
92 16 0.03
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (77 bp):
TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAA
TTTCTGTCTTTC
Found at i:11837481 original size:161 final size:152
Alignment explanation
Indices: 11837200--11838190 Score: 737
Period size: 161 Copynumber: 6.4 Consensus size: 152
11837190 TCAATTTCTG
* * * * *
11837200 CTCACATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT-AATTTCTATTTTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCAATTTCTGTCTTTC
***
11837264 TTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
65 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
11837329 TTCTGTCTTTCAAAAAAAATTAAAAAAATCAA
130 TTCTGT-TTTC-------A-TAAAAAAATCAA
* *
11837361 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTCTTTCA
* * * * * *
11837426 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCATGCTGAGGTATTTTC--GT
66 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
11837489 TCTATGTTTC--AAAAAAATCAA
131 TCTGT-TTTCATAAAAAAATCAA
* * ** * ** *
11837510 CTCATATTACAAGAGGTGAGTTGAGCCTTGGGTCACATG-TCGAGGTATTTTCAAAATCTGTTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTCAATTTCTG-TCT
* * * *
11837574 TTAAATTATTTTTCAAAAACCAAC-CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
62 TTCAA--A------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
*
11837638 GTATTTTCAATTTCTGTTTT--T-CAAAAATCAA
119 GTATTTTCAATTTCTGTTTTCATAAAAAAATCAA
* * * * * * *
11837669 CTCATATTGCGAGAGGTGATTTGAGCCTCGGGGCACGCTAAGGTATTGTCAATTTTTGTCTTTTA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTCTTTCA
* * * *
11837734 ATTTATTTTTCAAAAATCAACTCATATTACGATAGGTGAGTTGAGCCTCAAGTCACATTGAGGTA
66 A---A------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
*
11837799 TTTTCAA----T-TTATCATAAAAAAAATCAA
122 TTTTCAATTTCTGTTTTCAT-AAAAAAATCAA
* * *
11837826 GTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAA----TGT-TTGTC
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTCTT-TC
* *
11837886 ---AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTCCAAT
65 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
*
11837948 TTCTGTCTTTCAAAAAAAAATCAA
130 TTCTGT-TTTCATAAAAAAATCAA
* *
11837972 CTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA--CTGAGGTGTTTTCCATTTCTGTTATTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA-G-G---T--A------TT-TTCA
* * * * * ** * *
11838035 ATTTCTGTGTTTCAAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCATACGC
52 ATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGACACGT
* * *
11838100 TGAGGTATTTTCAAATTATGTTTTTC-CAAAAAAATCAA
115 TGAGGTATTTTCAATTTCTG-TTTTCATAAAAAAATCAA
*
11838138 CTCATATTGCGAGAGGTGAGTTCAG----AGGACACGCTGAGGTATTTTCAATTTCT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
11838191 TTTTTTTTCA
Statistics
Matches: 680, Mismatches: 93, Indels: 125
0.76 0.10 0.14
Matches are distributed among these distances:
141 56 0.08
144 4 0.01
145 2 0.00
146 45 0.07
147 4 0.01
149 39 0.06
150 11 0.02
151 24 0.04
152 8 0.01
153 7 0.01
154 2 0.00
155 1 0.00
156 6 0.01
157 90 0.13
158 50 0.07
159 92 0.14
160 17 0.03
161 110 0.16
162 11 0.02
163 3 0.00
164 4 0.01
165 32 0.05
166 36 0.05
167 25 0.04
168 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (152 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTCTTTCA
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
TCTGTTTTCATAAAAAAATCAA
Found at i:11837831 original size:157 final size:157
Alignment explanation
Indices: 11837428--11838287 Score: 660
Period size: 165 Copynumber: 5.4 Consensus size: 157
11837418 GTCTTTCAAA
* * *
11837428 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCATGCTGAGGTATTTTC-GTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATT-T
* * * * *
11837492 ATGTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTTGGGTCACATG-TCGAGGT
65 ATGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGT
* * *
11837556 ATTTTCAAAATCTGTTTTTTAAATTATTTTTC
127 A-TTTCAATATTTGTCTTTTAAATTATTTTTC
* * *
11837588 AAAAACCAAC-CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTA
*** * * *
11837652 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCCTCGGGGCACGCTAAGGTATTG
66 TGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATT-
* *
11837717 TCAATTTTTGTCTTTTAATTTATTTTTC
130 TCAATATTTGTCTTTTAAATTATTTTTC
* * * **
11837745 AAAAATCAACTCATATTACGATAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTA
** * * *
11837810 T-CATAAAAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGG----T
66 TGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTT
* *
11837870 --A-A-TT-TC-----AA-TGTTTGTC
131 CAATATTTGTCTTTTAAATTATTTTTC
* * * * * *
11837886 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTCCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTA
* **
11837951 TGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA--CTGAGGT
66 TG--TTT--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT
* * * * *
11838014 GTTTTCCAT-TTCTGT-TATTCAATTTCTGTGTTTC
127 -ATTTCAATATT-TGTCT-TTTAAATTAT-T-TTTC
* * * * *
11838048 AAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGACTCATACGCTGAGGTATTTTC
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GTC--ACGCTGAGGTATTTTC
* * * *
11838112 AAATTATGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAG----AGGACACGCT
60 AATTTATG--TTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
* * * *
11838173 GAGGTATTTTCAATTTCTTTTTTTTTCAATTTATGTTTGTC
122 GAGGTA-TTTCAATAT-TTGTCTTTT-AAATTAT-TTT-TC
*
11838214 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCTGAGGTATTTTCAA
*
11838279 TTGATGTTT
62 TTTATGTTT
11838288 TTTTTCAATT
Statistics
Matches: 565, Mismatches: 89, Indels: 89
0.76 0.12 0.12
Matches are distributed among these distances:
141 66 0.12
142 1 0.00
144 7 0.01
146 44 0.08
147 2 0.00
148 2 0.00
149 1 0.00
150 1 0.00
151 1 0.00
152 2 0.00
153 1 0.00
154 1 0.00
156 2 0.00
157 87 0.15
158 49 0.09
159 89 0.16
160 13 0.02
161 1 0.00
162 8 0.01
163 3 0.01
164 13 0.02
165 99 0.18
166 47 0.08
167 25 0.04
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (157 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTA
TGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTT
CAATATTTGTCTTTTAAATTATTTTTC
Found at i:11837849 original size:72 final size:71
Alignment explanation
Indices: 11837745--11838024 Score: 300
Period size: 72 Copynumber: 3.9 Consensus size: 71
11837735 TTTATTTTTC
* * * *
11837745 AAAAATCAACTCATATTACGATAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTT-
11837810 TCATAAA
65 TCATAAA
* * *
11837817 AAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATGTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAAT-TT
* *
11837882 T-GT--C
65 TCATAAA
* ** *
11837886 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTCCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAA-TT-
*
11837951 TGTCTTTCAAAA
64 T-TC-AT--AAA
* * *
11837963 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACACTGAGGTGTTTTCCATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTT
11838025 CTGTTATTCA
Statistics
Matches: 173, Mismatches: 25, Indels: 19
0.80 0.12 0.09
Matches are distributed among these distances:
69 55 0.32
70 2 0.01
71 2 0.01
72 56 0.32
73 4 0.02
74 2 0.01
75 13 0.08
77 39 0.23
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTT
CATAAA
Found at i:11838335 original size:92 final size:91
Alignment explanation
Indices: 11838129--11838431 Score: 342
Period size: 87 Copynumber: 3.4 Consensus size: 91
11838119 GTTTTTCCAA
* *
11838129 AAAAATCAACTCATATTGCGAGAGGTGAGTTCAG----AGG--ACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
**
11838188 TCTTTTTTTTTCAATTTATG-TTTGTC
66 AATTTTTTTTTCAATTTATGCTTTG-C
11838214 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
*
11838279 TTGATGTTTTTTTTCAATTTATGCTTTGC
64 TTAAT-TTTTTTTTCAATTTATGCTTTGC
* * * **
11838308 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCATATACCGAGGTATTTTCAA--
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
* * * *
11838371 AATCTATTTTACAAATTT-T-CTTT-T
66 AATTTTTTTTTC-AATTTATGCTTTGC
*
11838395 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
11838432 TGGCTCACGT
Statistics
Matches: 191, Mismatches: 16, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
87 68 0.36
88 4 0.02
89 7 0.04
90 7 0.04
91 3 0.02
92 58 0.30
93 22 0.12
94 18 0.09
95 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (91 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
AATTTTTTTTTCAATTTATGCTTTGC
Found at i:11838482 original size:87 final size:84
Alignment explanation
Indices: 11838129--11838535 Score: 268
Period size: 87 Copynumber: 4.6 Consensus size: 84
11838119 GTTTTTCCAA
* * * * *
11838129 AAAAATCAACTCATATTGCGAGAGGTGAGTTCAG---AGG--ACACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTAGGTCACATGCCGAGGTATTTTCAATTT
* *
11838189 CTTTTTTTTTCAATTTATGTTTGT
66 C--TATTTTT-AATTTA-CTTT-T
* * *
11838213 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCA
1 ---AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCT-AGGTCACATGCCGAGGTATTTTCA
* * *
11838278 ATTGATGTTTTTTTTCAATTTATGCTTTGC
62 ATT--T-CTATTTTT-AATTTA--CTTT-T
* * * * **
11838308 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCATATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCT-AGGTCACATGCCGAGGTATTTTCAATT
* *
11838373 TCTATTTTACAAATTTTCTTTT
65 TCTATTTT--TAATTTACTTTT
* * * * *
11838395 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTAGG-TCACATGCCGAGGTATTTTCAATT
* *
11838460 TCTGTTTTTAATGTCTAATTTT
65 TCTATTTTTAAT-T-TACTTTT
* * *
11838482 AAAGAGTCAATTCATATTACGAGAAATGAGTTGAG-CTCAGGATCACATGCCGAG
1 AAA-AATCAACTCATATTACGAGAAGTGAGTTGAGCCT-AGG-TCACATGCCGAG
11838536 TAAAGAATAA
Statistics
Matches: 263, Mismatches: 40, Indels: 33
0.78 0.12 0.10
Matches are distributed among these distances:
85 3 0.01
86 3 0.01
87 102 0.39
88 43 0.16
89 5 0.02
90 6 0.02
91 3 0.01
92 58 0.22
93 21 0.08
94 14 0.05
95 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (84 bp):
AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTAGGTCACATGCCGAGGTATTTTCAATTT
CTATTTTTAATTTACTTTT
Found at i:11839069 original size:17 final size:16
Alignment explanation
Indices: 11839047--11839193 Score: 54
Period size: 17 Copynumber: 9.6 Consensus size: 16
11839037 ACCCAAACCG
11839047 CCCCACTAACTCCAACA
1 CCCCACTAA-TCCAACA
*
11839064 CCCCACTAA---ATCA
1 CCCCACTAATCCAACA
11839077 -CCCACTAAATCACAAC-
1 CCCCACT-AATC-CAACA
*
11839093 CACCCACTAA---ATCA
1 C-CCCACTAATCCAACA
11839107 CCCCACTAACTCCAACA
1 CCCCACTAA-TCCAACA
* *
11839124 CCCCACTAAACC--GA
1 CCCCACTAATCCAACA
*
11839138 --CCACTAAATCATAACTA
1 CCCCACT-AATC-CAAC-A
*
11839155 CCCCACTAA---ATCA
1 CCCCACTAATCCAACA
11839168 CCCCACTAACTCCAACA
1 CCCCACTAA-TCCAACA
11839185 CCCCACTAA
1 CCCCACTAA
11839194 ACCACCCACT
Statistics
Matches: 96, Mismatches: 11, Indels: 46
0.63 0.07 0.30
Matches are distributed among these distances:
12 11 0.11
13 28 0.29
14 4 0.04
16 2 0.02
17 38 0.40
18 8 0.08
19 5 0.05
ACGTcount: A:0.39, C:0.47, G:0.01, T:0.14
Consensus pattern (16 bp):
CCCCACTAATCCAACA
Found at i:11839101 original size:30 final size:29
Alignment explanation
Indices: 11839048--11839206 Score: 187
Period size: 30 Copynumber: 5.3 Consensus size: 29
11839038 CCCAAACCGC
*
11839048 CCCACTAACTCCAACACCCCACTAAATCA
1 CCCACTAAATCCAACACCCCACTAAATCA
11839077 CCCACTAAATCACAAC-CACCCACTAAATCA
1 CCCACTAAATC-CAACAC-CCCACTAAATCA
* *
11839107 CCCCACTAACTCCAACACCCCACTAAACCGA
1 -CCCACTAAATCCAACACCCCACTAAATC-A
*
11839138 -CCACTAAATCATAACTACCCCACTAAATCA
1 CCCACTAAATC-CAAC-ACCCCACTAAATCA
* *
11839168 CCCCACTAACTCCAACACCCCACTAAACCA
1 -CCCACTAAATCCAACACCCCACTAAATCA
11839198 CCCACTAAA
1 CCCACTAAA
11839207 CCACTCCACC
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
29 28 0.25
30 47 0.42
31 27 0.24
32 9 0.08
ACGTcount: A:0.40, C:0.47, G:0.01, T:0.13
Consensus pattern (29 bp):
CCCACTAAATCCAACACCCCACTAAATCA
Found at i:11839108 original size:12 final size:12
Alignment explanation
Indices: 11839065--11839089 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11839055 ACTCCAACAC
11839065 CCCACTAAATCA
1 CCCACTAAATCA
11839077 CCCACTAAATCA
1 CCCACTAAATCA
11839089 C
1 C
11839090 AACCACCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (12 bp):
CCCACTAAATCA
Found at i:11839190 original size:61 final size:60
Alignment explanation
Indices: 11839047--11839233 Score: 270
Period size: 61 Copynumber: 3.1 Consensus size: 60
11839037 ACCCAAACCG
*
11839047 CCCCACTAACTCCAACACCCCACTAAATCACCCACTAAATCACAACCACCCACTAAATCA
1 CCCCACTAACTCCAACACCCCACTAAACCACCCACTAAATCACAACCACCCACTAAATCA
* *
11839107 CCCCACTAACTCCAACACCCCACTAAACCGA-CCACTAAATCATAACTACCCCACTAAATCA
1 CCCCACTAACTCCAACACCCCACTAAACC-ACCCACTAAATCACAACCA-CCCACTAAATCA
* * * **
11839168 CCCCACTAACTCCAACACCCCACTAAACCACCCACTAAACCAC-TCCACCAACTCCATCA
1 CCCCACTAACTCCAACACCCCACTAAACCACCCACTAAATCACAACCACCCACTAAATCA
11839227 CCCCACT
1 CCCCACT
11839234 TGCCTACAAA
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
59 16 0.14
60 46 0.40
61 52 0.46
ACGTcount: A:0.37, C:0.49, G:0.01, T:0.13
Consensus pattern (60 bp):
CCCCACTAACTCCAACACCCCACTAAACCACCCACTAAATCACAACCACCCACTAAATCA
Found at i:11839203 original size:12 final size:12
Alignment explanation
Indices: 11839186--11839215 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
11839176 ACTCCAACAC
11839186 CCCACTAAACCA
1 CCCACTAAACCA
11839198 CCCACTAAACCA
1 CCCACTAAACCA
11839210 CTCCAC
1 C-CCAC
11839216 CAACTCCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.37, C:0.53, G:0.00, T:0.10
Consensus pattern (12 bp):
CCCACTAAACCA
Found at i:11846107 original size:3 final size:3
Alignment explanation
Indices: 11846099--11846228 Score: 55
Period size: 3 Copynumber: 46.0 Consensus size: 3
11846089 TTTAACTACT
* * * *
11846099 TTA TTA TTA -AA TTA TTA -AA TT- TTA TTA TT- TTC TT- TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
11846142 TTTA TTA -TA TT- TTA CTA TTA TTG TTA TTT TTA TTT TTA TTA CTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
11846186 CT- TTA TTA TTA TT- GTA TTA TTG TTA TTA TT- TTCC TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
11846229 CCATTAAAAT
Statistics
Matches: 94, Mismatches: 21, Indels: 24
0.68 0.15 0.17
Matches are distributed among these distances:
2 16 0.17
3 73 0.78
4 5 0.05
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:11846175 original size:23 final size:20
Alignment explanation
Indices: 11846123--11846177 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
11846113 TTAAATTTTA
*
11846123 TTATTTTCTTTTACTATTAT
1 TTATTTTATTTTACTATTAT
*
11846143 TTATTATATTTTACTATTATT
1 TTATTTTATTTTACTATTA-T
11846164 GTTATTTTTATTTT
1 -TTA-TTTTATTTT
11846178 TATTACTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 17 0.59
21 1 0.03
22 3 0.10
23 8 0.28
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (20 bp):
TTATTTTATTTTACTATTAT
Found at i:11846224 original size:43 final size:41
Alignment explanation
Indices: 11846093--11846225 Score: 108
Period size: 43 Copynumber: 3.0 Consensus size: 41
11846083 TAGTTATTTA
*
11846093 ACTACTTTATTATTAAATTATTAAATT-TTATTATTTTCTT-TT
1 ACTACTTTATTATT-ATTTATT--ATTGTTATTATTTTCTTATT
* * * *
11846135 ACTATTATTTATTATATTTTACTATTATTGTTATTTTTATTTTTATT
1 ACTA--CTTTATTAT-TATT--TATTATTGTTATTATT-TTCTTATT
11846182 ACTACTTTATTATTATTGTATTATTGTTATTATTTTCCTTATT
1 ACTACTTTATTATTATT-TATTATTGTTATTATTTT-CTTATT
11846225 A
1 A
11846226 TTACCATTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 17
0.73 0.10 0.17
Matches are distributed among these distances:
42 6 0.08
43 21 0.29
44 15 0.21
45 16 0.22
46 8 0.11
47 6 0.08
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (41 bp):
ACTACTTTATTATTATTTATTATTGTTATTATTTTCTTATT
Found at i:11846276 original size:3 final size:3
Alignment explanation
Indices: 11846268--11846422 Score: 109
Period size: 3 Copynumber: 50.7 Consensus size: 3
11846258 TATTTATTTG
* * *
11846268 TTA TTA TTA -TA TTT TGTA TTA TTA TCA CTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *** *
11846313 TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TCT- TTA TTAA CCCC TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TT-A -TTA TTA
* * * * *
11846360 TTA TTT TTA TTA TTTG TTA TTA TTA ATA TATA TTA TTA TAA TTC TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
*
11846407 TTA ATA -TA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
11846423 TACTATTTTT
Statistics
Matches: 117, Mismatches: 26, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
2 5 0.04
3 103 0.88
4 9 0.08
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:11846393 original size:23 final size:25
Alignment explanation
Indices: 11846366--11846424 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
11846356 CTTGTTATTT
*
11846366 TTATTATTT-GTTATTATTAATATA
1 TTATTATTTAATTATTATTAATATA
*
11846390 -TATTATTATAATTCTTATTAATATA
1 TTATTATT-TAATTATTATTAATATA
11846415 TTATTATTTA
1 TTATTATTTA
11846425 CTATTTTTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 7 0.23
24 1 0.03
25 15 0.50
26 7 0.23
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (25 bp):
TTATTATTTAATTATTATTAATATA
Found at i:11846627 original size:14 final size:14
Alignment explanation
Indices: 11846588--11846621 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
11846578 TGTTATTCAC
*
11846588 TTATTTATTTCTTT
1 TTATTTATTTATTT
11846602 TTATTTATTTATTT
1 TTATTTATTTATTT
11846616 TTATTT
1 TTATTT
11846622 TATTATCGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (14 bp):
TTATTTATTTATTT
Found at i:11846627 original size:18 final size:18
Alignment explanation
Indices: 11846588--11846625 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
11846578 TGTTATTCAC
11846588 TTATTTATTTCTTTTTAT
1 TTATTTATTTCTTTTTAT
*
11846606 TTATTTATTTTTATTTTAT
1 TTATTTATTTCT-TTTTAT
11846625 T
1 T
11846626 ATCGATCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (18 bp):
TTATTTATTTCTTTTTAT
Found at i:11850420 original size:17 final size:17
Alignment explanation
Indices: 11850398--11850436 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
11850388 TAGGGGTTTT
*
11850398 AATTAGAAAGTGATTTC
1 AATTAGAAAGAGATTTC
11850415 AATTAGAAAGAGATTTC
1 AATTAGAAAGAGATTTC
11850432 AATTA
1 AATTA
11850437 ATCAACCTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.33
Consensus pattern (17 bp):
AATTAGAAAGAGATTTC
Found at i:11856140 original size:29 final size:31
Alignment explanation
Indices: 11856077--11856142 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 31
11856067 CTTTTATTTA
** *
11856077 TTATTTATTATTTTTACTTTTACTTTTATCT
1 TTATTTATTATTTTTACAATTACTTTTATCG
11856108 TTATTTATT-TTTTT-CAATTACTTTTCAT-G
1 TTATTTATTATTTTTACAATTACTTTT-ATCG
11856137 TTATTT
1 TTATTT
11856143 CTCTTTAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 15 0.48
30 7 0.23
31 9 0.29
ACGTcount: A:0.20, C:0.09, G:0.02, T:0.70
Consensus pattern (31 bp):
TTATTTATTATTTTTACAATTACTTTTATCG
Found at i:11870849 original size:20 final size:18
Alignment explanation
Indices: 11870814--11870853 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
11870804 AAAGTTTTCC
11870814 AAAAAAAAAAAGAAGAAG
1 AAAAAAAAAAAGAAGAAG
*
11870832 AAAAAAAAAAAG-ACAAG
1 AAAAAAAAAAAGAAGAAG
11870849 AAAAA
1 AAAAA
11870854 GGAGAGGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAAGAAGAAG
Found at i:11871211 original size:65 final size:65
Alignment explanation
Indices: 11871107--11871230 Score: 194
Period size: 65 Copynumber: 1.9 Consensus size: 65
11871097 ATCTTACCCA
* *
11871107 TATTGAATTTGCTATCCTTAATTACTGTATTCATTTTGAGCTATGCTCCCAATCAATTTCCTTCT
1 TATTGAATTTGCTATCCTTAATTAATGTATTCATTTTGAGCTATGATCCCAATCAATTTCCTTCT
* * * *
11871172 TATTGCATTTGCTATCTTTGATTAATTTATTCATTTTGAGCTATGATCCCAATCAATTT
1 TATTGAATTTGCTATCCTTAATTAATGTATTCATTTTGAGCTATGATCCCAATCAATTT
11871231 ATTTTTTGTC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.24, C:0.19, G:0.10, T:0.48
Consensus pattern (65 bp):
TATTGAATTTGCTATCCTTAATTAATGTATTCATTTTGAGCTATGATCCCAATCAATTTCCTTCT
Found at i:11871681 original size:100 final size:100
Alignment explanation
Indices: 11871508--11871905 Score: 760
Period size: 100 Copynumber: 4.0 Consensus size: 100
11871498 TACAACCTTA
11871508 ATGAACAATAAGTAATGACAACCCAAACATTAAGAAGGGATCATTCTCATGACATTTTGCATTCA
1 ATGAACAATAAGTAATGACAACCCAAACATTAAGAAGGGATCATTCTCATGACATTTTGCATTCA
*
11871573 TACAAATATCATTCATACACATCTAGTTAAGAGTG
66 TACAAATATCATTCATACACATCTAGTTAGGAGTG
11871608 ATGAACAATAAGTAATGACAACCCAAACATTAAGAAGGGATCATTCTCATGACATTTTGCATTCA
1 ATGAACAATAAGTAATGACAACCCAAACATTAAGAAGGGATCATTCTCATGACATTTTGCATTCA
11871673 TACAAATATCATTCATACACATCTAGTTAGGAGTG
66 TACAAATATCATTCATACACATCTAGTTAGGAGTG
*
11871708 ATGAACAATAAGTAATGACAACCCAAACATTAAGAAGGGATCATTCTCATGACATTTTTCATTCA
1 ATGAACAATAAGTAATGACAACCCAAACATTAAGAAGGGATCATTCTCATGACATTTTGCATTCA
*
11871773 TAAAAATATCATTCATACACATCTAGTTAGGAGTG
66 TACAAATATCATTCATACACATCTAGTTAGGAGTG
*
11871808 ATGAACAATAAGTAATGACAACCCAAACATTAAGAAGGGATCATTCTTATGACATTTTGCATTCA
1 ATGAACAATAAGTAATGACAACCCAAACATTAAGAAGGGATCATTCTCATGACATTTTGCATTCA
11871873 TACAAATATCATTCATACACATCTAGTTAGGAG
66 TACAAATATCATTCATACACATCTAGTTAGGAG
11871906 CATTTGATTC
Statistics
Matches: 292, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 292 1.00
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (100 bp):
ATGAACAATAAGTAATGACAACCCAAACATTAAGAAGGGATCATTCTCATGACATTTTGCATTCA
TACAAATATCATTCATACACATCTAGTTAGGAGTG
Found at i:11872146 original size:45 final size:45
Alignment explanation
Indices: 11872033--11872778 Score: 471
Period size: 44 Copynumber: 16.6 Consensus size: 45
11872023 AATCCCATAC
* *
11872033 CCCTGAAGTTGCACT-GAGACAGATTGAAGTTATAATGACGAATCTTATCT
1 CCCTGAAGTTGCAGTGGAG-CAGATTGAAG--ATACT-A--AATCTTATCT
* * ** *
11872083 TCCTGAAGTTGCAATGGAGCAGATTGAAGCCACTAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAAATCTTATCT
* * * * *
11872128 CCCTAAAGTAGCAGTGGAGCAGGTTAAAGATA--AAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAAATCTTATCT
* * * * * *
11872171 CCTTGAAGTTACAGTGGAGCAGACTGAAGATAGC-GAATCTCATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CTAAATCTTATCT
* * * * *
11872216 CCTTAAAGTTGCAGTGGAACAAATTGAAGCTATAAATTACAGATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--ACTA-A-ATCTTATCT
** * * * *
11872267 ATCTGAAGTTGCAGTAGAACAGA-T---CATAGC-AAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CTAAATCTTATCT
* * * *
11872308 CCCTGAAGTTGCAGTGGAGCAGGTTAAAGTTA-TAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAAATCTTATCT
11872352 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCT-AATCTTAT-T
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CTAAATCTTATCT
* * *
11872396 CCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTACAGATCTTATCT
1 -CCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--ACTA-A-ATCTTATCT
* * * *
11872448 CTCTGAAGTTGCA-TAGAGCAGA-TCAA-A-AC-AAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAAATCTTATCT
* * *
11872488 CCCTAAAGTTGCAGTGGAGCAGCTTGAAG-TCACT-AGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACTAAATCTTATCT
* * * * *
11872532 CCCTAAAGTTGCAGTGGAGCAGACTGAAGACAATAGATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAAATCTTATCT
* * * * *
11872577 ACCTGAAGTTGCAATGGAGTAGATCGAAGATAGC-AAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CTAAATCTTATCT
* * * *
11872622 CTCTGAAGTAGCAGTAGAGCATG-TTGAA-ATTAC-AAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCA-GATTGAAGA-TACTAAATCTTATCT
* *
11872666 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATAC-CAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAAATCTTATCT
* *** * *
11872710 CCTTGAAGTTGCAACAGAGCAGATTGAAGCTACT-AATCCTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAAATCTTATCT
* * *
11872754 CCATGAAGTTTCAGTGGAGCGGATT
1 CCCTGAAGTTGCAGTGGAGCAGATT
11872779 AAAGCGACAA
Statistics
Matches: 537, Mismatches: 118, Indels: 88
0.72 0.16 0.12
Matches are distributed among these distances:
40 19 0.04
41 34 0.06
42 6 0.01
43 38 0.07
44 178 0.33
45 166 0.31
46 3 0.01
47 5 0.01
48 3 0.01
49 5 0.01
50 33 0.06
51 46 0.09
52 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (45 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAAATCTTATCT
Found at i:11872484 original size:180 final size:179
Alignment explanation
Indices: 11872032--11872771 Score: 691
Period size: 180 Copynumber: 4.1 Consensus size: 179
11872022 AAATCCCATA
* * *
11872032 CCCCTGAAGTTGCACT-GAGACAGATTGAAGTTATAATGAC-GAATCTTATCT-TCCTGAAGTTG
1 CCCCTGAAGTTGCAGTGGA-ACAGATTGAAGCTATAATTACAG-ATCTTATCTCT-CTGAAGTTG
* * * * *
11872094 CAATGGAGCAGATTGAAGCCACTAAACCTTATCTCCCTAAAGTAGCAGTGGAGCAGGTTAAAGAT
63 CAGTAGAGCAGA-TCAA--AAC-AAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGAT
* * * *
11872159 A--AAGTCTTATCTCCTTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAATCTCATT
124 ACTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA-CTAATCTTA-T
* * * * *
11872215 TCCTTAAAGTTGCAGTGGAACAAATTGAAGCTATAAATTACAGATCTTATCTATCTGAAGTTGCA
1 CCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAT-AATTACAGATCTTATCTCTCTGAAGTTGCA
* * * * *
11872280 GTAGAACAGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTTA-TAAG
65 GTAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGATACTAAG
*
11872344 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCTAATCTTATT
130 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA-CTAATCTTA-T
*
11872396 CCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTGCA
1 CCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAT-AATTACAGATCTTATCTCTCTGAAGTTGCA
* *
11872461 -TAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGCTTGAAG-TCACT-A
65 GTAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGAT-ACTAA
* * *
11872523 GTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGACAATAGATCTTAT
129 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACTA-ATCTTAT
* * ** * * * * *
11872575 CTACCTGAAGTTGCAATGGAGTAGATCGAAG--AT-A--GCAAACCTTATCTCTCTGAAGTAGCA
1 C-CCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAATTACAGATCTTATCTCTCTGAAGTTGCA
* * ** * ** * *
11872635 GTAGAGCATGTTGAAATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACC
65 GTAGAGCA-GATCAAA--ACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGATACT
* *** * * *
11872700 AA-TCTTATCTCCTTGAAGTTGCAACAGAGCAGATTGAAGCTACTAATCCTAT
127 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACTAATCTTAT
* *
11872752 CTCCATGAAGTTTCAGTGGA
1 C-CCCTGAAGTTGCAGTGGA
11872772 GCGGATTAAA
Statistics
Matches: 472, Mismatches: 70, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
174 22 0.05
175 7 0.01
176 6 0.01
177 22 0.05
178 75 0.16
179 7 0.01
180 159 0.34
181 111 0.24
183 27 0.06
184 34 0.07
185 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (179 bp):
CCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAATTACAGATCTTATCTCTCTGAAGTTGCAG
TAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGATACTAAGT
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACTAATCTTAT
Found at i:11872642 original size:134 final size:129
Alignment explanation
Indices: 11872435--11872733 Score: 379
Period size: 134 Copynumber: 2.3 Consensus size: 129
11872425 GCTATAAATT
*
11872435 ACAGATCTTATCTCTCTGAAGTTGC-ATAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTG
1 ACAGATCTTATCTC-CTGAAGTTGCAATAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTAG
* * *
11872499 CAGTGGAGCA-GCTTGAAGTCACTAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAC
65 CAGTAGAGCATG-TTGAAATCACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAC
11872563 A
129 A
* * * * *
11872564 ATAGATCTTATCTACCTGAAGTTGCAATGGAGTAGATCGAAGATAGCAAACCTTATCTCTCTGAA
1 ACAGATCTTATCT-CCTGAAGTTGCAATAGAGCAGATC-AA-A-A-CAAACCTTATCTCCCTAAA
* *
11872629 GTAGCAGTAGAGCATGTTGAAATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA
61 GTAGCAGTAGAGCATGTTGAAATCACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAA
*
11872694 GATA
126 GACA
* *
11872698 CCA-ATCTTATCTCCTTGAAGTTGCAACAGAGCAGAT
1 ACAGATCTTATCTCC-TGAAGTTGCAATAGAGCAGAT
11872734 TGAAGCTACT
Statistics
Matches: 145, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
129 22 0.15
130 11 0.08
131 2 0.01
132 3 0.02
133 28 0.19
134 78 0.54
135 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (129 bp):
ACAGATCTTATCTCCTGAAGTTGCAATAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTAGC
AGTAGAGCATGTTGAAATCACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGACA
Found at i:11874217 original size:3 final size:3
Alignment explanation
Indices: 11874211--11874303 Score: 50
Period size: 3 Copynumber: 31.7 Consensus size: 3
11874201 TTTCTTTTAC
* * * * *
11874211 TAT TATT TAT TA- TAT TTT TAC TAT TAT TGT TAT TTT TAT TTT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
11874256 TAC TAC T-T TAT TAT TAT T-G TAT TAT TGT TAT TAT T-T TCCT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
11874299 TAT TA
1 TAT TA
11874304 CCATTAAAAT
Statistics
Matches: 67, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
2 6 0.09
3 56 0.84
4 5 0.07
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:11874255 original size:12 final size:12
Alignment explanation
Indices: 11874197--11874302 Score: 61
Period size: 12 Copynumber: 8.4 Consensus size: 12
11874187 AGTAATTTTT
*
11874197 TTATTTTCTTTTA
1 TTATTTT-TATTA
*
11874210 CTATTATTTATTA
1 TTATT-TTTATTA
*
11874223 -TATTTTTACTA
1 TTATTTTTATTA
* *
11874234 TTATTGTTATTT
1 TTATTTTTATTA
11874246 TTATTTTTATTA
1 TTATTTTTATTA
*
11874258 CTACTTTATTATTA
1 TTA-TTT-TTATTA
* *
11874272 TTGTATTATTGTTA
1 -T-TATTTTTATTA
**
11874286 TTATTTTCCTTA
1 TTATTTTTATTA
11874298 TTATT
1 TTATT
11874303 ACCATTAAAA
Statistics
Matches: 72, Mismatches: 15, Indels: 13
0.72 0.15 0.13
Matches are distributed among these distances:
11 6 0.08
12 37 0.51
13 12 0.17
14 13 0.18
15 2 0.03
16 2 0.03
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.68
Consensus pattern (12 bp):
TTATTTTTATTA
Found at i:11874278 original size:11 final size:11
Alignment explanation
Indices: 11874195--11874281 Score: 63
Period size: 11 Copynumber: 7.9 Consensus size: 11
11874185 TTAGTAATTT
*
11874195 TTTTATT-TTC
1 TTTTATTATTA
*
11874205 TTTTACTATTA
1 TTTTATTATTA
11874216 -TTTATTA-TA
1 TTTTATTATTA
*
11874225 TTTTTACTATTA
1 -TTTTATTATTA
*
11874237 TTGTTATTTTTA
1 TT-TTATTATTA
*
11874249 TTTTTATTACTA
1 -TTTTATTATTA
*
11874261 CTTTATTATTA
1 TTTTATTATTA
*
11874272 TTGTATTATT
1 TTTTATTATT
11874282 GTTATTATTT
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
9 2 0.03
10 12 0.20
11 27 0.46
12 16 0.27
13 2 0.03
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:11874407 original size:33 final size:33
Alignment explanation
Indices: 11874344--11874426 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
11874334 ATTTATTTGT
*
11874344 TATTATTATATTT-TGTATTATTATCACTATTAC
1 TATTATTATATTTAT-TATTATTACCACTATTAC
* * * *
11874377 TATTATTATATTTATTTTTTTTACCTCTATTAT
1 TATTATTATATTTATTATTATTACCACTATTAC
* *
11874410 TACTATTATCTTTATTA
1 TATTATTATATTTATTA
11874427 ACCCATTGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
33 40 0.98
34 1 0.02
ACGTcount: A:0.28, C:0.10, G:0.01, T:0.61
Consensus pattern (33 bp):
TATTATTATATTTATTATTATTACCACTATTAC
Found at i:11879750 original size:5 final size:5
Alignment explanation
Indices: 11879734--11879772 Score: 69
Period size: 5 Copynumber: 7.6 Consensus size: 5
11879724 CAATGTTATG
11879734 TGTTA TGATTA TGTTA TGTTA TGTTA TGTTA TGTTA TGT
1 TGTTA TG-TTA TGTTA TGTTA TGTTA TGTTA TGTTA TGT
11879773 GAATTGATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 28 0.85
6 5 0.15
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (5 bp):
TGTTA
Found at i:11880909 original size:2 final size:2
Alignment explanation
Indices: 11880902--11880936 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
11880892 AATTAACATT
11880902 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11880937 TTCTAATAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11881350 original size:11 final size:11
Alignment explanation
Indices: 11881333--11881366 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
11881323 ACCTAACCCA
11881333 AAAAAAACAAAG
1 AAAAAAA-AAAG
11881345 AAAAAAAAAAG
1 AAAAAAAAAAG
11881356 AAAAAGAAAAA
1 AAAAA-AAAAA
11881367 CTTACCCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:11881352 original size:17 final size:17
Alignment explanation
Indices: 11881332--11881366 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11881322 AACCTAACCC
*
11881332 AAAAAAA-ACAAAGAAA
1 AAAAAAAGAAAAAGAAA
11881348 AAAAAAAGAAAAAGAAA
1 AAAAAAAGAAAAAGAAA
11881365 AA
1 AA
11881367 CTTACCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.89, C:0.03, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAAAGAAA
Found at i:11881381 original size:16 final size:15
Alignment explanation
Indices: 11881362--11881396 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
11881352 AAAGAAAAAG
* *
11881362 AAAAACTTACCCCAA
1 AAAAACCTAACCCAA
11881377 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
11881392 AAAAA
1 AAAAA
11881397 AAGAAGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.63, C:0.29, G:0.00, T:0.09
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:11881406 original size:28 final size:29
Alignment explanation
Indices: 11881375--11881442 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
11881365 AACTTACCCC
11881375 AAAAAAACCTAACCCAA-AAAAAAAGA-A
1 AAAAAAACCTAACCCAACAAAAAAAGATA
** *
11881402 GAAAAAAGA-AAAACCTAACAAAAAAAGATA
1 -AAAAAA-ACCTAACCCAACAAAAAAAGATA
11881432 AAAAAAACCTA
1 AAAAAAACCTA
11881443 GCCACCTAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
28 13 0.42
29 17 0.55
30 1 0.03
ACGTcount: A:0.74, C:0.15, G:0.06, T:0.06
Consensus pattern (29 bp):
AAAAAAACCTAACCCAACAAAAAAAGATA
Found at i:11881424 original size:26 final size:24
Alignment explanation
Indices: 11881394--11881442 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 24
11881384 TAACCCAAAA
11881394 AAAAAGAAGAAAAAAGAAAAACCTAAC
1 AAAAA-AAG-AAAAA-AAAAACCTAAC
*
11881421 AAAAAAAGATAAAAAAAACCTA
1 AAAAAAAGAAAAAAAAAACCTA
11881443 GCCACCTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 9 0.43
25 4 0.19
26 3 0.14
27 5 0.24
ACGTcount: A:0.76, C:0.10, G:0.08, T:0.06
Consensus pattern (24 bp):
AAAAAAAGAAAAAAAAAACCTAAC
Found at i:11882109 original size:2 final size:2
Alignment explanation
Indices: 11882097--11882132 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
11882087 TTTTATGTAC
*
11882097 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11882133 TTTTGCACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11882298 original size:20 final size:20
Alignment explanation
Indices: 11882212--11882300 Score: 56
Period size: 22 Copynumber: 4.2 Consensus size: 20
11882202 TAATATTTTC
*
11882212 TTTTATTGTAGATATTATTAT
1 TTTTA-TGTACATATTATTAT
11882233 TATATTAT-TACATATT-TTAT
1 T-T-TTATGTACATATTATTAT
* * *
11882253 TATATGCATATATATATATATGTAT
1 T-T-T-TATGTACATAT-TAT-TAT
11882278 TTTTATGTACATATTATTAT
1 TTTTATGTACATATTATTAT
11882298 TTT
1 TTT
11882301 ATATTATTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
20 15 0.27
21 13 0.24
22 16 0.29
23 5 0.09
24 2 0.04
25 4 0.07
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (20 bp):
TTTTATGTACATATTATTAT
Found at i:11883995 original size:12 final size:12
Alignment explanation
Indices: 11883978--11884013 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
11883968 ATTCATTTGA
11883978 CATTCATGCATT
1 CATTCATGCATT
11883990 CATTCATGCATT
1 CATTCATGCATT
*
11884002 CATTCATACATT
1 CATTCATGCATT
11884014 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:11889316 original size:70 final size:69
Alignment explanation
Indices: 11889197--11889618 Score: 410
Period size: 70 Copynumber: 6.2 Consensus size: 69
11889187 GAGTTAAGCC
*
11889197 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
11889261 TGAGGTA
63 TGAGGTA
* * ** * *
11889268 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
11889333 AGGTA
65 AGGTA
* *
11889338 TTTTTAATTTTTGTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTCAATTTTTGTTTT-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
11889403 AGGTA
65 AGGTA
* * * ** * * *
11889408 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
11889464 ---A
66 GGTA
*** ** *
11889465 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
11889526 GGTA
66 GGTA
* * *
11889530 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
11889595 TGAGGTA
63 TGAGGTA
*
11889602 TTTTCAATTTCTGTTTT
1 TTTTCAATTTTTGTTTT
11889619 CAATTTACGT
Statistics
Matches: 285, Mismatches: 44, Indels: 45
0.76 0.12 0.12
Matches are distributed among these distances:
53 31 0.11
57 9 0.03
60 2 0.01
62 2 0.01
65 5 0.02
66 4 0.01
69 34 0.12
70 124 0.44
71 10 0.04
72 64 0.22
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
GGTA
Found at i:11889490 original size:262 final size:257
Alignment explanation
Indices: 11889030--11889621 Score: 1033
Period size: 262 Copynumber: 2.3 Consensus size: 257
11889020 TTTCAAGGAA
*
11889030 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
11889095 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
11889160 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
11889225 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
11889287 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
11889352 TTT-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
11889416 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
11889481 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
11889546 TTT
255 TTT
* * * * * *
11889549 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
11889614 GTTTTCAA
64 GTTTTCAA
11889622 TTTACGTTGT
Statistics
Matches: 318, Mismatches: 8, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
256 52 0.16
257 67 0.21
259 2 0.01
261 4 0.01
262 131 0.41
264 60 0.19
265 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:11889504 original size:122 final size:123
Alignment explanation
Indices: 11889339--11889584 Score: 381
Period size: 122 Copynumber: 2.0 Consensus size: 123
11889329 GTTGAGGTAT
11889339 TTTTAATTTTTGTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTAATTTTTGTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGA
* *
11889404 GGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 GGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
11889459 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
11889524 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
64 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
11889584 T
1 T
11889585 CAGGTCACGC
Statistics
Matches: 113, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
120 12 0.11
121 4 0.04
122 55 0.49
123 1 0.01
124 13 0.12
125 28 0.25
ACGTcount: A:0.24, C:0.13, G:0.23, T:0.39
Consensus pattern (123 bp):
TTTTAATTTTTGTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGA
GGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:11889580 original size:72 final size:71
Alignment explanation
Indices: 11889459--11889624 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
11889449 GAGTTAAGCC
** * *
11889459 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
11889523 TGAGGTA
65 TGAGGTA
*
11889530 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
11889595 TGAGGTA
65 TGAGGTA
* *
11889602 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
11889625 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:11889955 original size:74 final size:76
Alignment explanation
Indices: 11889849--11889993 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
11889839 TTTTTGCCTT
*
11889849 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
11889911 CAATTTCTGTTG
65 CAATTTCTGTTG
* * *
11889923 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
11889988 AATTTC
66 AATTTC
11889994 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTGTTG
Found at i:11889961 original size:165 final size:166
Alignment explanation
Indices: 11889689--11890165 Score: 721
Period size: 165 Copynumber: 2.9 Consensus size: 166
11889679 CTACTTTTTC
11889689 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * *
11889754 GTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
* *
11889819 TTTCAATTTCCGTTTTTCAATTTTTGCCTTTC-AAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
11889854 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
11889919 GTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
11889984 TTTCAATTTCCATTTTTCAATTTCTGCATTTCAAAAAAAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTC----AAAA
*
11890024 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * ** * *
11890089 GTTTTC--AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
11890150 TTTCAATTTCTGTTTT
131 TTTCAATTTCCGTTTT
11890166 CAAAAAATCA
Statistics
Matches: 287, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
165 154 0.54
166 27 0.09
168 34 0.12
170 72 0.25
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (166 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
Found at i:11890104 original size:72 final size:73
Alignment explanation
Indices: 11890022--11890529 Score: 399
Period size: 72 Copynumber: 6.5 Consensus size: 73
11890012 TTTCAAAAAA
*
11890022 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
11890087 CTGTTTTC
66 CTGTTTTC
* * ** ** *
11890095 -AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
11890159 CTGTTTTC
66 CTGTTTTC
* * * ** *
11890167 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
11890232 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
11890243 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
11890308 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
11890322 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCA
**
11890386 AAATCTGTTTTTC
62 ATTTCTG-TTTTC
* * **
11890399 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGA
*
11890464 GCTATTTTCAATTTCTGTTTTTTTTTTC
52 GGTATTTTCAATTTCTG------TTTTC
11890492 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
11890530 TTTTTAATTT
Statistics
Matches: 348, Mismatches: 53, Indels: 58
0.76 0.12 0.13
Matches are distributed among these distances:
72 64 0.18
73 33 0.09
75 21 0.06
76 4 0.01
77 57 0.16
78 5 0.01
79 64 0.18
80 1 0.00
82 5 0.01
83 29 0.08
86 2 0.01
88 54 0.16
89 1 0.00
92 2 0.01
93 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:11890345 original size:79 final size:76
Alignment explanation
Indices: 11890021--11890739 Score: 420
Period size: 88 Copynumber: 9.0 Consensus size: 76
11890011 ATTTCAAAAA
** *
11890021 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
11890084 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * *
11890095 --AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
11890156 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
11890167 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
11890231 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
11890243 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
11890308 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
11890322 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
**
11890386 AAATCTGTTTTTC
65 ATTTCTG-TTTTC
* ** * **
11890399 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
11890464 GCTATTTTCAATTTCTGTTTTTTTTTTC
55 GGTATTTTCAATTTCTG------TTTTC
* * * * * *
11890492 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
11890556 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTG-TTTTC
* **
11890579 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
11890640 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
11890654 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
11890719 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
11890740 TAATGTCTGT
Statistics
Matches: 503, Mismatches: 84, Indels: 103
0.73 0.12 0.15
Matches are distributed among these distances:
72 64 0.13
73 31 0.06
75 36 0.07
76 5 0.01
77 63 0.13
78 7 0.01
79 64 0.13
80 2 0.00
81 2 0.00
82 6 0.01
83 30 0.06
84 29 0.06
85 7 0.01
86 2 0.00
87 12 0.02
88 114 0.23
89 8 0.02
90 1 0.00
91 1 0.00
92 13 0.03
93 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:11890399 original size:14 final size:13
Alignment explanation
Indices: 11890380--11890415 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
11890370 TGTCGAGGTA
11890380 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
11890393 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
11890407 TTTTCAAAA
1 TTTTCAAAA
11890416 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:11890547 original size:30 final size:30
Alignment explanation
Indices: 11890511--11890572 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
11890501 CAACTCATAT
11890511 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
11890541 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
11890571 TG
1 TG
11890573 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:11890673 original size:255 final size:249
Alignment explanation
Indices: 11890161--11890740 Score: 757
Period size: 255 Copynumber: 2.3 Consensus size: 249
11890151 TTCAATTTCT
* * *
11890161 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
11890226 TTCAATTTC-----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
* *
11890286 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTG
131 TCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTG
* ** * * * **
11890351 AGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCT
195 AGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
* *
11890406 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
11890470 TTCAATTTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTT
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTC
* * * * * * *
11890535 A-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTG
128 AGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTG
*
11890597 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
11890661 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
11890725 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
11890741 AATGTCTGTT
Statistics
Matches: 291, Mismatches: 28, Indels: 22
0.85 0.08 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
249 13 0.04
250 30 0.10
251 1 0.00
252 3 0.01
253 2 0.01
254 5 0.02
255 146 0.50
256 5 0.02
257 13 0.04
258 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (249 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
TCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGA
GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
Found at i:11891406 original size:17 final size:17
Alignment explanation
Indices: 11891386--11891421 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
11891376 AACCTAACCC
*
11891386 AAAAAAAA-ACAAAGAA
1 AAAAAAAAGAAAAAGAA
11891402 AAAAAAAAGAAAAAGAA
1 AAAAAAAAGAAAAAGAA
11891419 AAA
1 AAA
11891422 CTACCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAGAA
Found at i:11891420 original size:11 final size:11
Alignment explanation
Indices: 11891388--11891421 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
11891378 CCTAACCCAA
11891388 AAAAAAACAAAG
1 AAAAAAA-AAAG
11891400 AAAAAAAAAAG
1 AAAAAAAAAAG
11891411 AAAAAGAAAAA
1 AAAAA-AAAAA
11891422 CTACCCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:11891434 original size:14 final size:15
Alignment explanation
Indices: 11891417--11891450 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
11891407 AAAGAAAAAG
11891417 AAAAACT-ACCCAAA
1 AAAAACTAACCCAAA
*
11891431 AAAACCTAACCCAAA
1 AAAAACTAACCCAAA
11891446 AAAAA
1 AAAAA
11891451 AAGAAGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.68, C:0.26, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACTAACCCAAA
Found at i:11892328 original size:20 final size:20
Alignment explanation
Indices: 11892244--11892330 Score: 63
Period size: 20 Copynumber: 4.2 Consensus size: 20
11892234 TAATATTTTC
*
11892244 TTTTATTGTAGATATTATTAT
1 TTTTA-TGTACATATTATTAT
11892265 TATATTAT-TACATATT-TTA-
1 T-T-TTATGTACATATTATTAT
* *
11892284 TTATATGCATATATATATATGTAT
1 TTTTATG--TACATAT-TAT-TAT
11892308 TTTTATGTACATATTATTAT
1 TTTTATGTACATATTATTAT
11892328 TTT
1 TTT
11892331 ATATTATTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 19
0.68 0.07 0.25
Matches are distributed among these distances:
17 3 0.06
18 1 0.02
19 1 0.02
20 15 0.29
21 12 0.23
22 9 0.17
23 5 0.10
24 6 0.12
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59
Consensus pattern (20 bp):
TTTTATGTACATATTATTAT
Found at i:11894919 original size:9 final size:9
Alignment explanation
Indices: 11894907--11894961 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
11894897 TTAAAAAAAT
11894907 ATTTTTAAA
1 ATTTTTAAA
11894916 ATTTTTAAA
1 ATTTTTAAA
*
11894925 TTTATTTAATA
1 ATT-TTTAA-A
11894936 A-TTTTAAA
1 ATTTTTAAA
11894944 GATTTTT--A
1 -ATTTTTAAA
11894952 ATTTTTAAA
1 ATTTTTAAA
11894961 A
1 A
11894962 ATAATTTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
7 6 0.16
8 2 0.05
9 19 0.50
10 10 0.26
11 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:11894925 original size:19 final size:19
Alignment explanation
Indices: 11894903--11894960 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
11894893 AATATTAAAA
11894903 AAATATTTTTAAAATTTTT
1 AAATATTTTTAAAATTTTT
11894922 AAAT-TTATTTAATAA-TTTT
1 AAATATT-TTTAA-AATTTTT
*
11894941 AAAGATTTTT--AATTTTT
1 AAATATTTTTAAAATTTTT
11894958 AAA
1 AAA
11894961 AATAATTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
16 2 0.06
17 7 0.21
18 2 0.06
19 19 0.56
20 4 0.12
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
AAATATTTTTAAAATTTTT
Found at i:11894964 original size:29 final size:30
Alignment explanation
Indices: 11894901--11894978 Score: 92
Period size: 28 Copynumber: 2.7 Consensus size: 30
11894891 AAAATATTAA
*
11894901 AAAAATATTTTTAAAATTTTTAAATTTATT
1 AAAAATAATTTTAAAATTTTTAAATTTATT
*
11894931 --TAATAATTTTAAAGATTTTT-AATTT-TT
1 AAAAATAATTTTAAA-ATTTTTAAATTTATT
*
11894958 AAAAATAATTTTATAATTTTT
1 AAAAATAATTTTAAAATTTTT
11894979 TTGCATTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.05
28 22 0.54
29 17 0.41
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (30 bp):
AAAAATAATTTTAAAATTTTTAAATTTATT
Found at i:11896418 original size:21 final size:20
Alignment explanation
Indices: 11896384--11896436 Score: 83
Period size: 21 Copynumber: 2.7 Consensus size: 20
11896374 TAAGTGATAC
11896384 TTTAA-TTTATTTATGCAAA
1 TTTAATTTTATTTATGCAAA
11896403 TTTAATTTTCATTTATGCAAA
1 TTTAATTTT-ATTTATGCAAA
11896424 TTTAATTTT-TTTA
1 TTTAATTTTATTTA
11896437 ATTTAATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.28
20 3 0.09
21 20 0.62
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTAATTTTATTTATGCAAA
Found at i:11896427 original size:35 final size:35
Alignment explanation
Indices: 11896387--11896454 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
11896377 GTGATACTTT
*
11896387 AATTT-ATTTATGCAAATTTAATTTTCATTTATGCA
1 AATTTAATTT-TGCAAATTTAATTTTCAGTTATGCA
***
11896422 AATTTAATTTTTTTAATTTAATTTTCAGTTATG
1 AATTTAATTTTGCAAATTTAATTTTCAGTTATG
11896455 ATGTTTGCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 24 0.86
36 4 0.14
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (35 bp):
AATTTAATTTTGCAAATTTAATTTTCAGTTATGCA
Found at i:11898000 original size:30 final size:29
Alignment explanation
Indices: 11897960--11898049 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 29
11897950 GGGCGACGAC
11897960 GCAAGCCCATCAACAGCAGCCCCACAATCA
1 GCAAGCCCATCAACAGC-GCCCCACAATCA
* * * *
11897990 GCAGGCCCATCAACAACGCCCATACAATTA
1 GCAAGCCCATCAACAGCGCCC-CACAATCA
* *
11898020 GCAAGCCCATCAATAGCGCTGCCACAATCA
1 GCAAGCCCATCAACAGCGC-CCCACAATCA
11898050 CCGGGTCCAA
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
29 4 0.08
30 43 0.90
31 1 0.02
ACGTcount: A:0.36, C:0.39, G:0.14, T:0.11
Consensus pattern (29 bp):
GCAAGCCCATCAACAGCGCCCCACAATCA
Found at i:11902506 original size:126 final size:126
Alignment explanation
Indices: 11902281--11902778 Score: 800
Period size: 126 Copynumber: 4.0 Consensus size: 126
11902271 ATAGCCTCAT
* *
11902281 TTTTTCTACAAACTACTGTAGCAAAAGCGCGTCCACGTGGAAGCTTTTTTCTAAAATTTTGCTGA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCTAAAATTTTGCTGA
* * * *
11902346 CACTGCATCCTGCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACGTCTACTAAAAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
* * * *
11902407 TTTTTCTACGAACTACTGTAGCAAAAACGCGTCCACGTAGGAGCTTTTTT-TCGAAATTTTACTG
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCT-AAAATTTTGCTG
* *
11902471 ACAGTGCATCCTGCTTGAAGCGTTTTTGAAACTATTTGTTCAGAAATGTCTACTCAGAATTA
65 ACAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
* *
11902533 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCTGAAATTTTGCTTA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCTAAAATTTTGCTGA
* * * *
11902598 CAATGCATCTTGCTTGAAGCGTTTTTGACACTATTTATTTAGAAACGTCTACTCAGAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
* *
11902659 TTTTTCTACGAACTATTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCAAAATTTTGCTGA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCTAAAATTTTGCTGA
11902724 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCA
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCA
11902779 ATTAACCTAA
Statistics
Matches: 340, Mismatches: 30, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
125 1 0.00
126 338 0.99
127 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (126 bp):
TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCTAAAATTTTGCTGA
CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
Found at i:11902924 original size:19 final size:19
Alignment explanation
Indices: 11902900--11902972 Score: 58
Period size: 19 Copynumber: 3.8 Consensus size: 19
11902890 ACCATTATGT
11902900 ATCAATTAACCCTAAATTA
1 ATCAATTAACCCTAAATTA
** * *
11902919 ATCAATTAATGCTCATTTA
1 ATCAATTAACCCTAAATTA
*
11902938 ATCGAA-TAACCCTAATTTA
1 ATC-AATTAACCCTAAATTA
* * *
11902957 ATTAACTAACCATAAA
1 ATCAATTAACCCTAAA
11902973 CCCTAAACTC
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
18 2 0.05
19 38 0.90
20 2 0.05
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.33
Consensus pattern (19 bp):
ATCAATTAACCCTAAATTA
Found at i:11908545 original size:13 final size:13
Alignment explanation
Indices: 11908510--11908566 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 13
11908500 AATATATATA
*
11908510 AACCCAAGTACCC
1 AACCCAATTACCC
11908523 AA-CCAA--ACCC
1 AACCCAATTACCC
11908533 AACCCAATTACCC
1 AACCCAATTACCC
* *
11908546 AATCTAATTACCC
1 AACCCAATTACCC
*
11908559 AACTCAAT
1 AACCCAAT
11908567 CATAAAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
10 6 0.17
11 4 0.11
12 4 0.11
13 22 0.61
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.16
Consensus pattern (13 bp):
AACCCAATTACCC
Found at i:11909268 original size:13 final size:13
Alignment explanation
Indices: 11909250--11909274 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11909240 ATCCTATTAA
11909250 CTGTAATTTATTG
1 CTGTAATTTATTG
11909263 CTGTAATTTATT
1 CTGTAATTTATT
11909275 TGATTATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.56
Consensus pattern (13 bp):
CTGTAATTTATTG
Found at i:11912431 original size:29 final size:28
Alignment explanation
Indices: 11912362--11912431 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
11912352 AAAATTTTAA
*
11912362 AGGGTCAGTTAATTCAATTAATGGTATTT
1 AGGGT-AGTTAATTCAATTAATGATATTT
* * *
11912391 CGGGTCGATTAATTCAGTTAATGATATTTT
1 AGGGTAG-TTAATTCAATTAATGATA-TTT
*
11912421 AGGTTAGTTAA
1 AGGGTAGTTAA
11912432 CTAACTCAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
28 1 0.03
29 24 0.75
30 7 0.22
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (28 bp):
AGGGTAGTTAATTCAATTAATGATATTT
Found at i:11913533 original size:19 final size:21
Alignment explanation
Indices: 11913497--11913543 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
11913487 AATATCTATA
*
11913497 AAAATAATTCTAAAAATTTAT
1 AAAATAATTCTAAAAATTCAT
*
11913518 CAAATAA-TCT-AAAATTCAT
1 AAAATAATTCTAAAAATTCAT
11913537 AAAATAA
1 AAAATAA
11913544 AACACATTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 14 0.61
20 3 0.13
21 6 0.26
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAATAATTCTAAAAATTCAT
Found at i:11915557 original size:12 final size:12
Alignment explanation
Indices: 11915540--11915578 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
11915530 GTGTATATTT
11915540 AGATTAAATAAA
1 AGATTAAATAAA
11915552 AGATTATAA-AAA
1 AGATTA-AATAAA
*
11915564 AGATTTAATAAA
1 AGATTAAATAAA
11915576 AGA
1 AGA
11915579 AAAATATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 2 0.08
12 20 0.83
13 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (12 bp):
AGATTAAATAAA
Found at i:11921372 original size:180 final size:180
Alignment explanation
Indices: 11921063--11921661 Score: 901
Period size: 180 Copynumber: 3.3 Consensus size: 180
11921053 GCTACACACT
* * * * **
11921063 TCAAAGAGGTAAGACTTAGTGGTAAAATCTGTTCCATTGCTAATACATGGAGATAAGATTTACCA
1 TCAAAGAGATAAGGCTTGGTAGTAAAATCTACTCCATTGCTAATACATGGAGATAAGATTTACCA
* * * *
11921128 TCTGCAAAGATCTGCTCCGCTATAACTTCAGGGAGATAAAATCTTCAATTTTCAGTCCGCTTCCT
66 TCTGCGAAGATCTGCTCCGCTGTAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCT
* * * *
11921193 TGCTACCTCAGGAAGATAAGACTCATTCTTTAACCTGCTCTCTTACCACT
131 TGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACC
* * * * *
11921243 TTAGAGAGGTAAGGCTTGGTGGTAAAATCTACTCCATTGCTGATACATGGAGATAAGATTTACCA
1 TCAAAGAGATAAGGCTTGGTAGTAAAATCTACTCCATTGCTAATACATGGAGATAAGATTTACCA
*
11921308 TCTGCGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCT
66 TCTGCGAAGATCTGCTCCGCTGTAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCT
* * *
11921373 TGCTACCTCAAGAAGATAAGACTTATTCTTCAACCTGCTCTCTTGTTACC
131 TGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACC
* * *
11921423 TCAAAGAGATGAGGCTTGGTAGTAAAATCTACTTCATTGCTGATACATGGAGATAAGATTTACCA
1 TCAAAGAGATAAGGCTTGGTAGTAAAATCTACTCCATTGCTAATACATGGAGATAAGATTTACCA
* *
11921488 TCTGCGAAGATCTGCTCCGCTGTAACTTTAGGGAGATAAAATCTTCAATTCTCAGTCTGTTTCCT
66 TCTGCGAAGATCTGCTCCGCTGTAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCT
*
11921553 TACTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACC
131 TGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACC
* * * *
11921603 TCATAGAGATGAGGCTTGGTAGTAAAATCTGCTCCATTGCCAATACATGGAGATAAGAT
1 TCAAAGAGATAAGGCTTGGTAGTAAAATCTACTCCATTGCTAATACATGGAGATAAGAT
11921662 CTTTAATTTT
Statistics
Matches: 382, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
180 382 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (180 bp):
TCAAAGAGATAAGGCTTGGTAGTAAAATCTACTCCATTGCTAATACATGGAGATAAGATTTACCA
TCTGCGAAGATCTGCTCCGCTGTAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCT
TGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACC
Found at i:11921735 original size:132 final size:132
Alignment explanation
Indices: 11921519--11921793 Score: 406
Period size: 132 Copynumber: 2.1 Consensus size: 132
11921509 GTAACTTTAG
* *
11921519 GGAGATAAAATCTTCAATTCTCAGTCTGTTTCCTTACTACCTCAGGAAGATAAGACTCATTCTTC
1 GGAGATAAGATCTTCAATTCTCAGTCTGTTTCCTTACTACCTCAGGAAAATAAGACTCATTCTTC
* *
11921584 AACCTGCTCTCTTGCTACCTCATAGAGATGAGGCTTGGTAGTAAAATCTGCTCCATTGCCAATAC
66 AACCTACTCTCTTGCTACCTCAGAGAGATGAGGCTTGGTAGTAAAATCTGCTCCATTGCCAATAC
11921649 AT
131 AT
* * * * *
11921651 GGAGATAAGATCTTTAATTTTTAGTCTGTTTCCTTGCTACCTCAGGAAAATAAGACTTATTCTTC
1 GGAGATAAGATCTTCAATTCTCAGTCTGTTTCCTTACTACCTCAGGAAAATAAGACTCATTCTTC
* * * * * *
11921716 AACCTACTCTCTTGTTACCTCAGAGAGATGAGGCTTGGTGGTGAAATCTTCTCCATTGCCGATAT
66 AACCTACTCTCTTGCTACCTCAGAGAGATGAGGCTTGGTAGTAAAATCTGCTCCATTGCCAATAC
11921781 AT
131 AT
*
11921783 GAAGATAAGAT
1 GGAGATAAGAT
11921794 TCCATCTGCA
Statistics
Matches: 127, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
132 127 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (132 bp):
GGAGATAAGATCTTCAATTCTCAGTCTGTTTCCTTACTACCTCAGGAAAATAAGACTCATTCTTC
AACCTACTCTCTTGCTACCTCAGAGAGATGAGGCTTGGTAGTAAAATCTGCTCCATTGCCAATAC
AT
Found at i:11923054 original size:11 final size:10
Alignment explanation
Indices: 11923036--11923065 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
11923026 TTTTAGCCCC
11923036 TTTTTTTTCT
1 TTTTTTTTCT
11923046 TTTTCTTTTCT
1 TTTT-TTTTCT
11923057 TTTTTTTTC
1 TTTTTTTTC
11923066 CGAAAACCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:11925082 original size:75 final size:72
Alignment explanation
Indices: 11924995--11925161 Score: 198
Period size: 75 Copynumber: 2.3 Consensus size: 72
11924985 GTTTTCCTCA
* * * **
11924995 TTGA-AATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 TTGATAATACCATACCTACATTTTACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
11925058 TCAGTATGG
65 TCAGTAT-G
* * *
11925067 ATTTGATAATACCATACCTACATTTTACAGCTCAGTATGGATAATACCATACCTATATTTCACAG
1 --TTGATAATACCATACCTACATTTTACAACTCAGTATGGATAATACCATACCTACATTTCACAA
11925132 CTCAGTATG
64 CTCAGTATG
11925141 --GATAATACCATACCTACATTT
1 TTGATAATACCATACCTACATTT
11925162 CACACTTTTC
Statistics
Matches: 83, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 21 0.25
74 8 0.10
75 54 0.65
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.34
Consensus pattern (72 bp):
TTGATAATACCATACCTACATTTTACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATG
Found at i:11925162 original size:35 final size:36
Alignment explanation
Indices: 11924999--11925165 Score: 187
Period size: 35 Copynumber: 4.6 Consensus size: 36
11924989 TCCTCATTGA
** *
11924999 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
11925034 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
* *
11925074 AATACCATACCTACATTTTACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* *
11925109 AATACCATACCTATATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
11925144 AATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
11925166 CTTTTCCATG
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
35 86 0.75
39 3 0.03
40 26 0.23
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:11930693 original size:24 final size:22
Alignment explanation
Indices: 11930645--11930693 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 22
11930635 GGTTAATGAT
*
11930645 TTTTAAATAAATTAAGTTAGGG
1 TTTTAAATAAATTAACTTAGGG
11930667 TTTTAAATAAATTAGGACTTAGGG
1 TTTTAAATAAATTA--ACTTAGGG
11930691 TTT
1 TTT
11930694 ATGGTTTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 14 0.58
24 10 0.42
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.43
Consensus pattern (22 bp):
TTTTAAATAAATTAACTTAGGG
Found at i:11930770 original size:22 final size:22
Alignment explanation
Indices: 11930734--11930787 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
11930724 ATTAGGGTTC
* * *
11930734 TAGGATTTTAAATAAAATAAGT
1 TAGGGTTTAAAATAAAATAAAT
* *
11930756 TAGTGTTTAAAATAAATTAAAT
1 TAGGGTTTAAAATAAAATAAAT
11930778 TAGGGTTTAA
1 TAGGGTTTAA
11930788 GGTTGATTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.39
Consensus pattern (22 bp):
TAGGGTTTAAAATAAAATAAAT
Found at i:11930825 original size:107 final size:106
Alignment explanation
Indices: 11930696--11930965 Score: 294
Period size: 107 Copynumber: 2.5 Consensus size: 106
11930686 TAGGGTTTAT
* * *
11930696 GGTTTATGGTTTTAAATAGATTAAGTAAATTAGGGTTCTAGGATTTTAAATAAAATAAGTTAGTG
1 GGTTTTTGTTTTTAAATAGATTAAGTAAATTAGGGTTCTAGG-TTTTAAATAAAATAAGTTAGGG
* **
11930761 TTTAAAATAAATTAAATTAGGGTTTA-AGGTTGATTAAATTAA
65 TTTAAAATAAAATAAATTAGCATTTAGA-GTTGATTAAATTAA
* * *
11930803 GGTTTTTGTTTTTAAATAGATTAAGTAAATTAGAGTTTTAGTGTTTTAAATAAATTAAGTTAGGG
1 GGTTTTTGTTTTTAAATAGATTAAGTAAATTAGGGTTCTAG-GTTTTAAATAAAATAAGTTAGGG
* * * *
11930868 TTTAAAATAAAATAAGTTAGCATTTTGAGTTTATTAAATTAG
65 TTTAAAATAAAATAAATTAGCATTTAGAGTTGATTAAATTAA
* * * *
11930910 GGTTTATATTTTTTGGTTAA-A-ATTAATTAAATTAGGGTTCTGGGGTTTTAAATAAA
1 GGTTT-T-TGTTTT--TAAATAGATTAAGTAAATTAGGGTTCT-AGGTTTTAAATAAA
11930966 CCATTTCTAT
Statistics
Matches: 137, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
107 95 0.69
108 3 0.02
109 34 0.25
110 2 0.01
111 3 0.02
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.43
Consensus pattern (106 bp):
GGTTTTTGTTTTTAAATAGATTAAGTAAATTAGGGTTCTAGGTTTTAAATAAAATAAGTTAGGGT
TTAAAATAAAATAAATTAGCATTTAGAGTTGATTAAATTAA
Found at i:11930833 original size:33 final size:34
Alignment explanation
Indices: 11930795--11930862 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
11930785 TAAGGTTGAT
* *
11930795 TAAATTA-AGGTTTTTGT-TTTTAAATAGATTAAG
1 TAAATTAGA-GTTTTAGTGTTTTAAATAAATTAAG
11930828 TAAATTAGAGTTTTAGTGTTTTAAATAAATTAAG
1 TAAATTAGAGTTTTAGTGTTTTAAATAAATTAAG
11930862 T
1 T
11930863 TAGGGTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (34 bp):
TAAATTAGAGTTTTAGTGTTTTAAATAAATTAAG
Found at i:11930870 original size:22 final size:22
Alignment explanation
Indices: 11930840--11930887 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
11930830 AATTAGAGTT
* * *
11930840 TTAGTGTTTTAAATAAATTAAG
1 TTAGGGTTTAAAATAAAATAAG
11930862 TTAGGGTTTAAAATAAAATAAG
1 TTAGGGTTTAAAATAAAATAAG
11930884 TTAG
1 TTAG
11930888 CATTTTGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (22 bp):
TTAGGGTTTAAAATAAAATAAG
Found at i:11942426 original size:3 final size:3
Alignment explanation
Indices: 11942418--11942512 Score: 142
Period size: 3 Copynumber: 32.0 Consensus size: 3
11942408 AACTTAAAAT
11942418 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
11942466 TAA TAA T-A TAA -AA CT-A TAC TAA TAA TTAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA
11942510 TAA
1 TAA
11942513 AATCTTAGAT
Statistics
Matches: 85, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
2 5 0.06
3 77 0.91
4 3 0.04
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:11944759 original size:68 final size:65
Alignment explanation
Indices: 11944687--11944894 Score: 185
Period size: 67 Copynumber: 3.2 Consensus size: 65
11944677 CATCATGTGT
*
11944687 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC-AGACA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
11944752 TAG
63 TAG
** * * * * * *
11944755 ACAAGAGAGCTAC-GGGATATATGTAGCTAGGTCGCACGCGTGGTTCCAGGTGAAGGACACCATG
1 ACAAGAGAGCTACAGACATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATG
11944819 TAG
63 TAG
* * *
11944822 ACAAGAGAGCTACGAGACA-A-ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 ACAAGAGAGCTAC-AGACATATA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGT
11944883 -G
64 AG
11944884 TACAAGAGAGC
1 -ACAAGAGAGC
11944895 CGAACTATAT
Statistics
Matches: 113, Mismatches: 20, Indels: 19
0.74 0.13 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 24 0.21
65 3 0.03
66 22 0.19
67 26 0.23
68 16 0.14
69 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.21
Consensus pattern (65 bp):
ACAAGAGAGCTACAGACATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:11945979 original size:2 final size:2
Alignment explanation
Indices: 11945972--11946005 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
11945962 ATGTATCATG
11945972 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11946006 GTCTAGTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11946738 original size:45 final size:45
Alignment explanation
Indices: 11946686--11946814 Score: 224
Period size: 45 Copynumber: 2.9 Consensus size: 45
11946676 GTTACATTAT
11946686 CGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTAC
1 CGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTAC
11946731 CGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTAC
1 CGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTAC
* *
11946776 CGATACTGATTCGGCACTTTGTGTGTC-AGATATTGTTAC
1 CGTTACCGATTCGGCACTTTGTGTGTCGA-ATATTGTTAC
11946815 CATACTGCTA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
44 1 0.01
45 80 0.99
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (45 bp):
CGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTAC
Found at i:11946884 original size:59 final size:59
Alignment explanation
Indices: 11946812--11947710 Score: 539
Period size: 59 Copynumber: 15.5 Consensus size: 59
11946802 CAGATATTGT
*
11946812 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTATTCCGATGAGGTACTCTGTG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
11946871 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
* * *
11946930 TACCATACTGCTACTGTTACTATTACTGTTCCGGATTTGTTCTGATGAGGTACTCTATG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
* * * * * * *
11946989 TACCGTACTGCTACTTTTACTGTTACTGTTTCGGCTTCAG--CCGATGAGGCACTATGTG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATT-TGTTCCGATGAGGTACTCTGTG
* * ** * * * * * * * * ** *
11947047 --CCATACTGGT-GTGTTGGTTGGATCCGTGTATCC--ATCTGAGTCTGAGTCATGTTAATAGGG
1 TACCATACTGCTACTGTT-ACT-GTTAC-TGT-TCCGGATTTG-TTCCGA-TGA-GGTACTCTGT
11947107 G
59 G
* ** * *** * * *
11947108 TA-AATAAAGGTA----TAAAATAACTGATT-CGGCACTTTGTGT--G-TCAGATA-T-TGT-
1 TACCATACTGCTACTGTTACTGTTACTG-TTCCGG-A-TTTGT-TCCGATGAGGTACTCTGTG
* *
11947159 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTATTCCGATGAGTTACTCTGTG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
* * *
11947218 TACCATACTGCTACTGTTACTGTTATTGTTCTGGATTTGTTCTGATGAGGTACTCTGTG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
* * *
11947277 TACCATACTGCTACT-TTACTATTACTGTTCTGGATTTGTTCCGATGAGGTACTCTATG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
* * * * * * *
11947335 TACCATACTGCTACTGTTACTGTTACTGTTTCGGCTTCG-GCCGATAAGGCACTATGTG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
* * * * * * * * * **
11947393 --CCATACTGGT-GTGTT--GGTTGGATCTGTGTATCC--ATCTGAGTCTGAGTCATGTTAATAG
1 TACCATACTGCTACTGTTACTGTT--A-C--TGT-TCCGGATTTG-TTCCGA-TGA-GGTACTCT
*
11947451 GGG
57 GTG
* ** * *** * * *
11947454 TA-AATAAAGGTA----TAAAATAACTGATT-CGGCACTTTGTGT--G-TCAGATA-T-TGT-
1 TACCATACTGCTACTGTTACTGTTACTG-TTCCGG-A-TTTGT-TCCGATGAGGTACTCTGTG
* * *
11947505 TACCATACTACTACTGTTACTGTTACTGTTCCGGATTTATTCCGATGAGTTACTCTGTG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
* *
11947564 TACCATACTGCTACTGTTACTGTTATTGTTCCGGATTTGTTTCGATGAGGTACTCTGTG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
* * * *
11947623 TACCATACTGCTACT-TTACTATTACTGTTCTGGATTTGTTCCAATGAGGTACTCTATG
1 TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
*
11947681 TACCGTACTGCTACTGTTACTGTTACTGTT
1 TACCATACTGCTACTGTTACTGTTACTGTT
11947711 TTGGCTTCGG
Statistics
Matches: 645, Mismatches: 129, Indels: 132
0.71 0.14 0.15
Matches are distributed among these distances:
51 4 0.01
52 13 0.02
53 7 0.01
54 14 0.02
55 24 0.04
56 56 0.09
57 13 0.02
58 148 0.23
59 336 0.52
60 5 0.01
61 13 0.02
62 12 0.02
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (59 bp):
TACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
Found at i:11947460 original size:346 final size:346
Alignment explanation
Indices: 11946780--11947825 Score: 1932
Period size: 346 Copynumber: 3.0 Consensus size: 346
11946770 TGTTACCGAT
11946780 ACTGATTCGGCACTTTGTGTGTCAGATATTGTTACCATACTGCTACTGTTACTGTTACTGTTCCG
1 ACTGATTCGGCACTTTGTGTGTCAGATATTGTTACCATACTGCTACTGTTACTGTTACTGTTCCG
* *
11946845 GATTTATTCCGATGAGGTACTCTGTGTACCATACTGCTACTGTTACTGTTACTGTTCCGGATTTG
66 GATTTATTCCGATGAGTTACTCTGTGTACCATACTGCTACTGTTACTGTTATTGTTCCGGATTTG
* * *
11946910 TTCCGATGAGGTACTCTGTGTACCATACTGCTACTGTTACTATTACTGTTCCGGATTTGTTCTGA
131 TTCTGATGAGGTACTCTGTGTACCATACTGCTACT-TTACTATTACTGTTCTGGATTTGTTCCGA
* * *
11946975 TGAGGTACTCTATGTACCGTACTGCTACTTTTACTGTTACTGTTTCGGCTTCAGCCGATGAGGCA
195 TGAGGTACTCTATGTACCGTACTGCTACTGTTACTGTTACTGTTTCGGCTTCGGCCGATAAGGCA
11947040 CTATGTGCCATACTGGTGTGTTGGTTGGATCCGTGTATCCATCTGAGTCTGAGTCATGTTAATAG
260 CTATGTGCCATACTGGTGTGTTGGTTGGATCCGTGTATCCATCTGAGTCTGAGTCATGTTAATAG
11947105 GGGTAAATAAAGGTATAAAATA
325 GGGTAAATAAAGGTATAAAATA
11947127 ACTGATTCGGCACTTTGTGTGTCAGATATTGTTACCATACTGCTACTGTTACTGTTACTGTTCCG
1 ACTGATTCGGCACTTTGTGTGTCAGATATTGTTACCATACTGCTACTGTTACTGTTACTGTTCCG
*
11947192 GATTTATTCCGATGAGTTACTCTGTGTACCATACTGCTACTGTTACTGTTATTGTTCTGGATTTG
66 GATTTATTCCGATGAGTTACTCTGTGTACCATACTGCTACTGTTACTGTTATTGTTCCGGATTTG
11947257 TTCTGATGAGGTACTCTGTGTACCATACTGCTACTTTACTATTACTGTTCTGGATTTGTTCCGAT
131 TTCTGATGAGGTACTCTGTGTACCATACTGCTACTTTACTATTACTGTTCTGGATTTGTTCCGAT
*
11947322 GAGGTACTCTATGTACCATACTGCTACTGTTACTGTTACTGTTTCGGCTTCGGCCGATAAGGCAC
196 GAGGTACTCTATGTACCGTACTGCTACTGTTACTGTTACTGTTTCGGCTTCGGCCGATAAGGCAC
*
11947387 TATGTGCCATACTGGTGTGTTGGTTGGATCTGTGTATCCATCTGAGTCTGAGTCATGTTAATAGG
261 TATGTGCCATACTGGTGTGTTGGTTGGATCCGTGTATCCATCTGAGTCTGAGTCATGTTAATAGG
11947452 GGTAAATAAAGGTATAAAATA
326 GGTAAATAAAGGTATAAAATA
*
11947473 ACTGATTCGGCACTTTGTGTGTCAGATATTGTTACCATACTACTACTGTTACTGTTACTGTTCCG
1 ACTGATTCGGCACTTTGTGTGTCAGATATTGTTACCATACTGCTACTGTTACTGTTACTGTTCCG
11947538 GATTTATTCCGATGAGTTACTCTGTGTACCATACTGCTACTGTTACTGTTATTGTTCCGGATTTG
66 GATTTATTCCGATGAGTTACTCTGTGTACCATACTGCTACTGTTACTGTTATTGTTCCGGATTTG
*
11947603 TT-TCGATGAGGTACTCTGTGTACCATACTGCTACTTTACTATTACTGTTCTGGATTTGTTCCAA
131 TTCT-GATGAGGTACTCTGTGTACCATACTGCTACTTTACTATTACTGTTCTGGATTTGTTCCGA
*
11947667 TGAGGTACTCTATGTACCGTACTGCTACTGTTACTGTTACTGTTTTGGCTTCGGCCGATAAGGCA
195 TGAGGTACTCTATGTACCGTACTGCTACTGTTACTGTTACTGTTTCGGCTTCGGCCGATAAGGCA
*
11947732 CTATGTGCCATACTGGTGTGTTGGTTGGATCCGTGCATCCATCTGAGTCTGAGTCATGTTAATAG
260 CTATGTGCCATACTGGTGTGTTGGTTGGATCCGTGTATCCATCTGAGTCTGAGTCATGTTAATAG
11947797 GGGTAAATAAAGGTATAAAATA
325 GGGTAAATAAAGGTATAAAATA
11947819 ACTGATT
1 ACTGATT
11947826 ATTACTGAAT
Statistics
Matches: 680, Mismatches: 18, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
345 1 0.00
346 518 0.76
347 161 0.24
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (346 bp):
ACTGATTCGGCACTTTGTGTGTCAGATATTGTTACCATACTGCTACTGTTACTGTTACTGTTCCG
GATTTATTCCGATGAGTTACTCTGTGTACCATACTGCTACTGTTACTGTTATTGTTCCGGATTTG
TTCTGATGAGGTACTCTGTGTACCATACTGCTACTTTACTATTACTGTTCTGGATTTGTTCCGAT
GAGGTACTCTATGTACCGTACTGCTACTGTTACTGTTACTGTTTCGGCTTCGGCCGATAAGGCAC
TATGTGCCATACTGGTGTGTTGGTTGGATCCGTGTATCCATCTGAGTCTGAGTCATGTTAATAGG
GGTAAATAAAGGTATAAAATA
Found at i:11947875 original size:20 final size:18
Alignment explanation
Indices: 11947827--11948002 Score: 124
Period size: 18 Copynumber: 9.6 Consensus size: 18
11947817 TAACTGATTA
11947827 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
11947845 TTACCGGATAAGTTTGACTG
1 TTACTGAATAA--TTGACTG
* * *
11947865 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
11947883 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
11947901 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
11947919 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
11947937 TTACTGAATAACTTAAATTG
1 TTACTGAATAA-TT-GACTG
* * * *
11947957 CTACTGAATATTTTA-TT
1 TTACTGAATAATTGACTG
*
11947974 TTACTAAATAATTGACTG
1 TTACTGAATAATTGACTG
*
11947992 TTACTGGATAA
1 TTACTGAATAA
11948003 CCGATCAATT
Statistics
Matches: 123, Mismatches: 26, Indels: 18
0.74 0.16 0.11
Matches are distributed among these distances:
17 15 0.12
18 74 0.60
19 6 0.05
20 28 0.23
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:11948080 original size:36 final size:36
Alignment explanation
Indices: 11947815--11948095 Score: 163
Period size: 36 Copynumber: 7.5 Consensus size: 36
11947805 AAAGGTATAA
* * * *
11947815 AATAACTGATTATTACTGAATAATTGACTGTTACCG
1 AATAATTGATTGTTACTGAATAACTGACTGTTACTG
* * * *
11947851 GATAAGTTTGACTGTTACTGAATAACTGAATATTACTG
1 AATAA--TTGATTGTTACTGAATAACTGACTGTTACTG
** * *
11947889 AATAATTGATCATTACTGAATAACTGATTGTCACTG
1 AATAATTGATTGTTACTGAATAACTGACTGTTACTG
* * * *
11947925 AATGAA-TGACTGTTACTGAATAACTTAAATTGCTACTG
1 AAT-AATTGATTGTTACTGAATAAC-T-GACTGTTACTG
* * * *
11947963 AATATTTTATT-TTACTAAATAATTGACTGTTACTGG
1 AATAATTGATTGTTACTGAATAACTGACTGTTACT-G
* * ** * *
11947999 ATAACCGATCAATTGATCGATACTGAATAACTGGTTATTATTG
1 ---A---AT-AATTGATTGTTACTGAATAACTGACTGTTACTG
*
11948042 AATAATTGATTGTTACCGAATAACTGACTGTTACTG
1 AATAATTGATTGTTACTGAATAACTGACTGTTACTG
* *
11948078 AATAAATAATTGTT-CTGA
1 AATAATTGATTGTTACTGA
11948096 GTGGTAATGA
Statistics
Matches: 181, Mismatches: 49, Indels: 31
0.69 0.19 0.12
Matches are distributed among these distances:
35 10 0.06
36 87 0.48
37 16 0.09
38 42 0.23
39 1 0.01
40 1 0.01
42 2 0.01
43 6 0.03
44 16 0.09
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (36 bp):
AATAATTGATTGTTACTGAATAACTGACTGTTACTG
Found at i:11948091 original size:18 final size:18
Alignment explanation
Indices: 11947815--11948095 Score: 98
Period size: 18 Copynumber: 15.1 Consensus size: 18
11947805 AAAGGTATAA
* *
11947815 AATAACTGATTATTACTG
1 AATAAATGATTGTTACTG
* * *
11947833 AATAATTGACTGTTACCG
1 AATAAATGATTGTTACTG
* * *
11947851 GATAAGTTTGACTGTTACTG
1 AATAA--ATGATTGTTACTG
* * *
11947871 AATAACTGAATATTACTG
1 AATAAATGATTGTTACTG
* **
11947889 AATAATTGATCATTACTG
1 AATAAATGATTGTTACTG
* *
11947907 AATAACTGATTGTCACTG
1 AATAAATGATTGTTACTG
* *
11947925 AATGAATGACTGTTACTG
1 AATAAATGATTGTTACTG
* * *
11947943 AATAACTTAAATTGCTACTG
1 AATAA-AT-GATTGTTACTG
** * *
11947963 AATATTTTATT-TTACTA
1 AATAAATGATTGTTACTG
* *
11947980 AATAATTGACTGTTACTG
1 AATAAATGATTGTTACTG
* *
11947998 GATAACCGATCAATTGATCGATACTG
1 AATAA---AT-GATTG-T---TACTG
* * * *
11948024 AATAACTGGTTATTATTG
1 AATAAATGATTGTTACTG
* *
11948042 AATAATTGATTGTTACCG
1 AATAAATGATTGTTACTG
* *
11948060 AATAACTGACTGTTACTG
1 AATAAATGATTGTTACTG
*
11948078 AATAAATAATTGTT-CTG
1 AATAAATGATTGTTACTG
11948095 A
1 A
11948096 GTGGTAATGA
Statistics
Matches: 195, Mismatches: 55, Indels: 27
0.70 0.20 0.10
Matches are distributed among these distances:
17 16 0.08
18 130 0.67
19 3 0.02
20 28 0.14
21 2 0.01
22 5 0.03
23 2 0.01
26 9 0.05
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
AATAAATGATTGTTACTG
Found at i:11949579 original size:13 final size:13
Alignment explanation
Indices: 11949561--11949596 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
11949551 CCAAGTACAC
11949561 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
11949574 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
*
11949587 GCCTGTGTCC
1 GCCCGTGTCC
11949597 TTCACACTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.44, G:0.31, T:0.25
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:11962783 original size:23 final size:23
Alignment explanation
Indices: 11962748--11962799 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
11962738 ACTGAATTTT
11962748 TTAAA-TCTTAAAAATAAAAAAA
1 TTAAATTCTTAAAAATAAAAAAA
*
11962770 TTAAATTCTTAAAAATAAAAATA
1 TTAAATTCTTAAAAATAAAAAAA
*
11962793 TAAAATT
1 TTAAATT
11962800 TAAAATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 5 0.19
23 22 0.81
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (23 bp):
TTAAATTCTTAAAAATAAAAAAA
Found at i:11965294 original size:18 final size:18
Alignment explanation
Indices: 11965240--11965295 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
11965230 TCATTTACGA
*
11965240 TACTATTCACGTATACGG
1 TACTATTCACGTATACAG
* *
11965258 CACTATTTACGTATACAG
1 TACTATTCACGTATACAG
*
11965276 TACTGTTCACGTATACAG
1 TACTATTCACGTATACAG
11965294 TA
1 TA
11965296 GTTGGGATTG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (18 bp):
TACTATTCACGTATACAG
Found at i:11970908 original size:18 final size:18
Alignment explanation
Indices: 11970882--11970957 Score: 89
Period size: 18 Copynumber: 4.2 Consensus size: 18
11970872 CAATCCCAAC
*
11970882 TACTGTATACGTGAACAG
1 TACTGTATACGTGAATAG
* *
11970900 TACTATATACGTAAATAG
1 TACTGTATACGTGAATAG
* *
11970918 TACCGTATATGTGAATAG
1 TACTGTATACGTGAATAG
* *
11970936 TATTGTATATGTGAATAG
1 TACTGTATACGTGAATAG
11970954 TACT
1 TACT
11970958 ATAAATGGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (18 bp):
TACTGTATACGTGAATAG
Found at i:11973175 original size:18 final size:18
Alignment explanation
Indices: 11973152--11973197 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
11973142 CCAACTTCTG
11973152 TATACGTAAACAGTACTA
1 TATACGTAAACAGTACTA
* *
11973170 TATACGTGAACAGTACTG
1 TATACGTAAACAGTACTA
11973188 TATACGTAAA
1 TATACGTAAA
11973198 TAGTGTCGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (18 bp):
TATACGTAAACAGTACTA
Found at i:11973233 original size:18 final size:18
Alignment explanation
Indices: 11973196--11973237 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
11973186 TGTATACGTA
* *
11973196 AATAGTGTCGTAAACGTG
1 AATAGTGTCATAAACATG
*
11973214 AATAGTGTCATATACATG
1 AATAGTGTCATAAACATG
11973232 AATAGT
1 AATAGT
11973238 ACCATAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (18 bp):
AATAGTGTCATAAACATG
Found at i:11973828 original size:11 final size:11
Alignment explanation
Indices: 11973775--11973829 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
11973765 TGACCTTTCC
*
11973775 AAGGTATAGGT
1 AAGGTATGGGT
*
11973786 -AGGTATGGGA
1 AAGGTATGGGT
*
11973796 AAGGTATGGGC
1 AAGGTATGGGT
11973807 AAGGTATGGGT
1 AAGGTATGGGT
*
11973818 AAGGAATGGGT
1 AAGGTATGGGT
11973829 A
1 A
11973830 TATTCTAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
10 8 0.21
11 30 0.79
ACGTcount: A:0.33, C:0.02, G:0.44, T:0.22
Consensus pattern (11 bp):
AAGGTATGGGT
Found at i:11977882 original size:18 final size:18
Alignment explanation
Indices: 11977859--11977931 Score: 94
Period size: 18 Copynumber: 4.1 Consensus size: 18
11977849 CAATCCCAAC
* *
11977859 TACTGTATACGTGAACAG
1 TACTGTATACGTAAATAG
11977877 TACTGTATACGTAAATAG
1 TACTGTATACGTAAATAG
*
11977895 TA-TCGTATACATAAATAG
1 TACT-GTATACGTAAATAG
*
11977913 TATTGTATACGTAAATAG
1 TACTGTATACGTAAATAG
11977931 T
1 T
11977932 GCCGTAAATG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
17 1 0.02
18 47 0.96
19 1 0.02
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (18 bp):
TACTGTATACGTAAATAG
Found at i:11978499 original size:11 final size:11
Alignment explanation
Indices: 11978471--11978513 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
11978461 TTGACCTTTT
11978471 CAAGGTATGGG
1 CAAGGTATGGG
*
11978482 -TAGGTATGGG
1 CAAGGTATGGG
11978492 CAAGGTATGGG
1 CAAGGTATGGG
*
11978503 CAAGGAATGGG
1 CAAGGTATGGG
11978514 TATATTCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.28, C:0.07, G:0.47, T:0.19
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:11983676 original size:21 final size:21
Alignment explanation
Indices: 11983647--11983687 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11983637 GAACACCCAT
*
11983647 TTTCGTTTTTCGTTTAAACCA
1 TTTCCTTTTTCGTTTAAACCA
*
11983668 TTTCCTTTTTTGTTTAAACC
1 TTTCCTTTTTCGTTTAAACC
11983688 CTAATGGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.20, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTCCTTTTTCGTTTAAACCA
Found at i:11983677 original size:22 final size:21
Alignment explanation
Indices: 11983643--11983687 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
11983633 GATCGAACAC
*
11983643 CCATTTTCGTTTTTCGTTTAAA
1 CCATTTCCGTTTTT-GTTTAAA
*
11983665 CCATTTCCTTTTTTGTTTAAA
1 CCATTTCCGTTTTTGTTTAAA
11983686 CC
1 CC
11983688 CTAATGGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.18, C:0.22, G:0.07, T:0.53
Consensus pattern (21 bp):
CCATTTCCGTTTTTGTTTAAA
Found at i:11995006 original size:18 final size:18
Alignment explanation
Indices: 11994983--11995022 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
11994973 AGCTATCAAG
11994983 AAATAGTCGTAGAATGAA
1 AAATAGTCGTAGAATGAA
11995001 AAATAGTCGTAGAATGAA
1 AAATAGTCGTAGAATGAA
11995019 AAAT
1 AAAT
11995023 GAAACTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.53, C:0.05, G:0.20, T:0.23
Consensus pattern (18 bp):
AAATAGTCGTAGAATGAA
Found at i:11995031 original size:18 final size:18
Alignment explanation
Indices: 11994990--11995031 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
11994980 AAGAAATAGT
**
11994990 CGTAGAATGAAAAATAGT
1 CGTAGAATGAAAAATAAA
11995008 CGTAGAATGAAAAATGAAA
1 CGTAGAATGAAAAAT-AAA
11995027 C-TAGA
1 CGTAGA
11995032 TGTAGTGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.52, C:0.07, G:0.21, T:0.19
Consensus pattern (18 bp):
CGTAGAATGAAAAATAAA
Done.