Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 49 of 345
Found at i:14040186 original size:24 final size:24
Alignment explanation
Indices: 14040101--14040218 Score: 80
Period size: 24 Copynumber: 4.9 Consensus size: 24
14040091 ATGTGCAAAT
* *
14040101 AGTTTAAAATA-ACTAATATA-AAA
1 AGTTTAAAATATA-TAATGTATGAA
* *
14040124 AGTTTAAAATAGATAATATAT-ACA
1 AGTTTAAAATATATAATGTATGA-A
* *
14040148 GTAGTTTAAACTATATAATGTATGTA
1 --AGTTTAAAATATATAATGTATGAA
* *
14040174 AGTTCAAAATATATAATATATGAA
1 AGTTTAAAATATATAATGTATGAA
* * *
14040198 AATTTAAAATAGATGATGTAT
1 AGTTTAAAATATATAATGTAT
14040219 ATAAAAACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
23 19 0.25
24 38 0.50
26 19 0.25
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (24 bp):
AGTTTAAAATATATAATGTATGAA
Found at i:14043388 original size:61 final size:63
Alignment explanation
Indices: 14043255--14043388 Score: 161
Period size: 60 Copynumber: 2.2 Consensus size: 63
14043245 ACTAGGCCTA
*
14043255 AGCCCTATT-CAGAAATCAAAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCAT
1 AGCCCTATTACAGAAATCAAAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCAT
* * * * * *
14043317 AGCCC-CTTACAG-TATCAAAG-TATATTGGGCC-TAGCCCATATCAGTATCAATCTGGGTCGT
1 AGCCCTATTACAGAAATCAAAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCAT
14043377 AGCCCTATTACA
1 AGCCCTATTACA
14043389 AGTCGAGATA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
60 32 0.52
61 21 0.34
62 8 0.13
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (63 bp):
AGCCCTATTACAGAAATCAAAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCAT
Found at i:14043783 original size:27 final size:26
Alignment explanation
Indices: 14043753--14043818 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
14043743 GTCAAAATTA
*
14043753 ACCTTAGGGGTATAACGGTCATTTTGC
1 ACCTTAGGGGTATAACGGTAATTTT-C
*
14043780 ACC-TAGGGGTAAAACGGTAATTTTC
1 ACCTTAGGGGTATAACGGTAATTTTC
*
14043805 ATACTTAGGGGTAT
1 A-CCTTAGGGGTAT
14043819 TTTAATAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 2 0.06
26 20 0.61
27 11 0.33
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
ACCTTAGGGGTATAACGGTAATTTTC
Found at i:14044082 original size:9 final size:9
Alignment explanation
Indices: 14044068--14044096 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14044058 ACATGTAGGC
14044068 TTTTCGGCT
1 TTTTCGGCT
14044077 TTTTCGG-T
1 TTTTCGGCT
14044085 TTTTCGGCT
1 TTTTCGGCT
14044094 TTT
1 TTT
14044097 ACCGATCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.00, C:0.17, G:0.21, T:0.62
Consensus pattern (9 bp):
TTTTCGGCT
Found at i:14047169 original size:40 final size:40
Alignment explanation
Indices: 14047112--14047335 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
14047102 TCGAATGATG
* * * *
14047112 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
14047152 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
14047192 TCCGGACTAAGATCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
14047231 T-CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
14047270 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
14047311 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
14047336 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
38 20 0.12
39 36 0.21
40 103 0.61
41 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14047259 original size:78 final size:78
Alignment explanation
Indices: 14047112--14047335 Score: 290
Period size: 78 Copynumber: 2.8 Consensus size: 78
14047102 TCGAATGATG
* * * * *
14047112 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAT-CGGACTAAGATCCGAAGGCATTT
14047177 GTGCGAGTTACTAAA
64 GTGCGAGTTACTAAA
*
14047192 TCCGGACTAAGAT-CCGAAGGCATTGTGCGAGTTACTAAATCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAG-TCCCGAAGGCATTGTGCGAGTTACTAAATCGGACTAAGATCCGAAGGCATTTG
14047256 TGCGAGTTACTAAA
65 TGCGAGTTACTAAA
* * * *
14047270 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AATCGGACTAAGAT-CCGAAGGCATT
14047334 TG
63 TG
14047336 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
77 1 0.01
78 55 0.43
79 25 0.20
80 46 0.36
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCGGACTAAGATCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:14055476 original size:40 final size:40
Alignment explanation
Indices: 14055291--14055476 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
14055281 TTCGAATGAT
* * *
14055291 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
14055331 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14055371 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14055411 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
14055452 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14055477 AATGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14055494 original size:80 final size:80
Alignment explanation
Indices: 14055291--14055499 Score: 189
Period size: 80 Copynumber: 2.6 Consensus size: 80
14055281 TTCGAATGAT
** * **
14055291 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-AATGAGTAG-CTATATCCGGGTTAAGATCCGAAGGCAT
14055354 TCGTGCGAGTTACTAAA
64 TCGTGCGAGTTACTAAA
* * *** * *
14055371 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGTA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGAATGAG-TAGCTATATCCGGGTTAAGAT-CCGAAGGCA
*
14055433 TTTGTGCGAGTTACTATAA
63 TTCGTGCGAGTTACTA-AA
*
14055452 -CCGGGCTATGTCCCGAAGGCATTTGAATGAGTAGCTATATCC-GGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGGTTAA
14055500 ACTCTGAAGG
Statistics
Matches: 103, Mismatches: 18, Indels: 17
0.75 0.13 0.12
Matches are distributed among these distances:
79 10 0.10
80 86 0.83
81 7 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:14056956 original size:60 final size:60
Alignment explanation
Indices: 14056863--14056983 Score: 233
Period size: 60 Copynumber: 2.0 Consensus size: 60
14056853 TACACCTAAC
14056863 ACCCTACTGCCACTACGCCATAAGCTCTTTTTGTGTTAAATTATACTCGCAACTTCTCTT
1 ACCCTACTGCCACTACGCCATAAGCTCTTTTTGTGTTAAATTATACTCGCAACTTCTCTT
*
14056923 ACCCTACTGCCACTACGCCATAAGCTCTTTTTGTGTTAAATTATACTCTCAACTTCTCTT
1 ACCCTACTGCCACTACGCCATAAGCTCTTTTTGTGTTAAATTATACTCGCAACTTCTCTT
14056983 A
1 A
14056984 ATCCTTATTC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.24, C:0.30, G:0.09, T:0.37
Consensus pattern (60 bp):
ACCCTACTGCCACTACGCCATAAGCTCTTTTTGTGTTAAATTATACTCGCAACTTCTCTT
Found at i:14066118 original size:16 final size:16
Alignment explanation
Indices: 14066056--14066111 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
14066046 AAATAATTTA
*
14066056 TAAAAAATTTAAAAATT
1 TAAAAAA-TTATAAATT
* **
14066073 TAAAAAATTTTATTTT
1 TAAAAAATTATAAATT
14066089 TAAAAAATTATAAATT
1 TAAAAAATTATAAATT
14066105 TAAAAAA
1 TAAAAAA
14066112 ATCTAAAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
16 25 0.78
17 7 0.22
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAAAAATTATAAATT
Found at i:14066141 original size:10 final size:9
Alignment explanation
Indices: 14066056--14066142 Score: 58
Period size: 9 Copynumber: 9.9 Consensus size: 9
14066046 AAATAATTTA
14066056 TAAAAAATT
1 TAAAAAATT
14066065 T-AAAAATT
1 TAAAAAATT
14066073 TAAAAAATT
1 TAAAAAATT
* **
14066082 T--TATTTT
1 TAAAAAATT
14066089 TAAAAAA-T
1 TAAAAAATT
*
14066097 T-ATAAATT
1 TAAAAAATT
*
14066105 TAAAAAAATC
1 T-AAAAAATT
*
14066115 TAAAAAATA
1 TAAAAAATT
14066124 TATAAAAATT
1 TA-AAAAATT
14066134 TAACAAAAT
1 TAA-AAAAT
14066143 AATAATAATA
Statistics
Matches: 59, Mismatches: 11, Indels: 15
0.69 0.13 0.18
Matches are distributed among these distances:
7 8 0.14
8 12 0.20
9 20 0.34
10 19 0.32
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (9 bp):
TAAAAAATT
Found at i:14066147 original size:19 final size:19
Alignment explanation
Indices: 14066108--14066147 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14066098 ATAAATTTAA
14066108 AAAAATCTAAAAAATATAT
1 AAAAATCTAAAAAATATAT
*
14066127 AAAAATTTAACAAAATA-AT
1 AAAAATCTAA-AAAATATAT
14066146 AA
1 AA
14066148 TAATAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (19 bp):
AAAAATCTAAAAAATATAT
Found at i:14070928 original size:1 final size:1
Alignment explanation
Indices: 14070922--14070950 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
14070912 GTTGACATTG
14070922 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14070951 GTTTATAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:14074824 original size:16 final size:16
Alignment explanation
Indices: 14074803--14074833 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14074793 AAAGTAACAC
*
14074803 ATTTTATTGTTTTATT
1 ATTTTATGGTTTTATT
14074819 ATTTTATGGTTTTAT
1 ATTTTATGGTTTTAT
14074834 CTAAAATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.10, T:0.71
Consensus pattern (16 bp):
ATTTTATGGTTTTATT
Found at i:14077062 original size:40 final size:38
Alignment explanation
Indices: 14076957--14077077 Score: 156
Period size: 37 Copynumber: 3.2 Consensus size: 38
14076947 AAATCTCCCT
* *
14076957 GTGCATTGCAACCCATCT-CCTCCATCGCCTTCTCCCC
1 GTGCATCGCAACCCATCTCCCTCCATCGCCTTCGCCCC
* * *
14076994 GTGCGTCGCAAACCATC-CCCTCCATCGCCTTCGCACC
1 GTGCATCGCAACCCATCTCCCTCCATCGCCTTCGCCCC
*
14077031 GTTCATCGCAACCCATCTCGGCCTCCATCGCCTTCGCCCC
1 GTGCATCGCAACCCATCTC--CCTCCATCGCCTTCGCCCC
14077071 GTGCATC
1 GTGCATC
14077078 TGCTACATAG
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
37 45 0.64
38 1 0.01
40 24 0.34
ACGTcount: A:0.14, C:0.48, G:0.15, T:0.23
Consensus pattern (38 bp):
GTGCATCGCAACCCATCTCCCTCCATCGCCTTCGCCCC
Found at i:14080351 original size:19 final size:20
Alignment explanation
Indices: 14080308--14080363 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
14080298 ATTGGGTCTT
14080308 GCCCATATTAACACAGTTAG
1 GCCCATATTAACACAGTTAG
* *
14080328 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTAG
* *
14080347 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
14080364 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTAG
Found at i:14086177 original size:21 final size:21
Alignment explanation
Indices: 14086151--14086197 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
14086141 TCAACTTAGA
*
14086151 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAACAGCGAGGGAG
14086172 GCGGAGGCAACAGCGAGGGAG
1 GCGGAGGCAACAGCGAGGGAG
14086193 GCGGA
1 GCGGA
14086198 ATATAACAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.55, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAACAGCGAGGGAG
Found at i:14086565 original size:43 final size:43
Alignment explanation
Indices: 14086479--14086623 Score: 182
Period size: 43 Copynumber: 3.3 Consensus size: 43
14086469 ACATATTACA
* * * *
14086479 AAAGACCAGGACTTTTAGCGGCACTTTTTTAAAAAAACGCCACT
1 AAAGAACAAGACTTCTAGCGGCGC-TTTTTAAAAAAACGCCACT
* *
14086523 AAAGAACAAGACTTCTCGCGGCGCTTTTTAAAAAAATGCCACT
1 AAAGAACAAGACTTCTAGCGGCGCTTTTTAAAAAAACGCCACT
* * *
14086566 AAAGAACAAGACTTTTAGCGGCGCTTTTTATATAAAACGCCATT
1 AAAGAACAAGACTTCTAGCGGCGCTTTTTA-AAAAAACGCCACT
*
14086610 ATAGAACAAGACTT
1 AAAGAACAAGACTT
14086624 TTAGTTTTTA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 46 0.52
44 42 0.48
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.26
Consensus pattern (43 bp):
AAAGAACAAGACTTCTAGCGGCGCTTTTTAAAAAAACGCCACT
Found at i:14086624 original size:44 final size:44
Alignment explanation
Indices: 14086479--14086627 Score: 194
Period size: 44 Copynumber: 3.4 Consensus size: 44
14086469 ACATATTACA
* * *
14086479 AAAGACCAGGACTTTTAGCGGCACTTTTT-TAAAAAAACGCCACT
1 AAAGAACAAGACTTTTAGCGGCGCTTTTTAT-AAAAAACGCCACT
* * *
14086523 AAAGAACAAGACTTCTCGCGGCGCTTTTTA-AAAAAATGCCACT
1 AAAGAACAAGACTTTTAGCGGCGCTTTTTATAAAAAACGCCACT
* *
14086566 AAAGAACAAGACTTTTAGCGGCGCTTTTTATATAAAACGCCATT
1 AAAGAACAAGACTTTTAGCGGCGCTTTTTATAAAAAACGCCACT
*
14086610 ATAGAACAAGACTTTTAG
1 AAAGAACAAGACTTTTAG
14086628 TTTTTAAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
43 40 0.44
44 51 0.56
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (44 bp):
AAAGAACAAGACTTTTAGCGGCGCTTTTTATAAAAAACGCCACT
Found at i:14086696 original size:43 final size:43
Alignment explanation
Indices: 14086628--14086718 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
14086618 AGACTTTTAG
* *
14086628 TTTTTAAAAAAGCGCCGCTATAAGTCCTGGT-CTTTAGCGGCGT
1 TTTTTAAAAAAGCGCCGCTAAAAGTCCT-GTCCTTTAGCGGCCT
* * * *
14086671 TTTTTATATAAGCGCTGCTAAAAGTCCTGTCCTTTAGTGGCCT
1 TTTTTAAAAAAGCGCCGCTAAAAGTCCTGTCCTTTAGCGGCCT
14086714 TTTTT
1 TTTTT
14086719 CAACAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 2 0.05
43 39 0.95
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.40
Consensus pattern (43 bp):
TTTTTAAAAAAGCGCCGCTAAAAGTCCTGTCCTTTAGCGGCCT
Found at i:14094298 original size:53 final size:53
Alignment explanation
Indices: 14094157--14094307 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
14094147 ATAAGTGCGC
* **
14094157 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
14094210 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
14094263 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
14094308 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:14101800 original size:53 final size:53
Alignment explanation
Indices: 14101644--14101809 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
14101634 TGACGAAAAT
* **
14101644 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
14101696 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
14101749 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
14101803 TATGTGA
1 -ATGTGA
14101810 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:14109029 original size:15 final size:14
Alignment explanation
Indices: 14109011--14109041 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
14109001 TTAATTTATT
14109011 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
14109026 TAATAATAATCTAA
1 TAATAATAATCTAA
14109040 TA
1 TA
14109042 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:14109052 original size:21 final size:20
Alignment explanation
Indices: 14109028--14109096 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
14109018 AATGCTAATA
14109028 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
14109049 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
14109068 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
14109089 ATAATAAT
1 ATAATAAT
14109097 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:14113791 original size:3 final size:3
Alignment explanation
Indices: 14113751--14113925 Score: 104
Period size: 3 Copynumber: 56.0 Consensus size: 3
14113741 TACCTACTAA
* * *
14113751 TAT TAT TGA- TAT TAA TAT ATAT TAAT GTAT TGT TAT TAT TAC TAT TAT
1 TAT TAT T-AT TAT TAT TAT -TAT T-AT -TAT TAT TAT TAT TAT TAT TAT
* * * * * *
14113799 T-T TCT TAT TAC CAT TAT TAT TAT TAT TCT ATACG TAT ATAT TAG TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TA-T TAT -TAT TAT TAT
*
14113846 T-T GTAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT TAT TCAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* * * * *
14113892 CTTT TAT TGT TAT CAT TAT TAC TAT TAT CAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14113926 ATTTATACTT
Statistics
Matches: 130, Mismatches: 29, Indels: 26
0.70 0.16 0.14
Matches are distributed among these distances:
2 4 0.03
3 106 0.82
4 18 0.14
5 2 0.02
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:14114235 original size:26 final size:24
Alignment explanation
Indices: 14114177--14114244 Score: 59
Period size: 28 Copynumber: 2.7 Consensus size: 24
14114167 TTCCTTTTTA
14114177 TATTTA-TTTACTTGTTACTTCAT
1 TATTTATTTTACTTGTTACTTCAT
*
14114200 TACTAATTATTTTAACTTGTTATTATCAT
1 TA-T--TTATTTT-ACTTGTTACT-TCAT
14114229 TATTTATTGTTA-TTGT
1 TATTTATT-TTACTTGT
14114245 AAATATATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
23 2 0.05
24 1 0.03
25 4 0.11
26 9 0.24
27 5 0.14
28 10 0.27
29 6 0.16
ACGTcount: A:0.25, C:0.09, G:0.06, T:0.60
Consensus pattern (24 bp):
TATTTATTTTACTTGTTACTTCAT
Found at i:14114306 original size:3 final size:3
Alignment explanation
Indices: 14114298--14114407 Score: 86
Period size: 3 Copynumber: 37.7 Consensus size: 3
14114288 TTTTTTCACT
* * *
14114298 TTA TTA TTA TTA CTA TTA TCA TTA TTCA TTA CT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
* * * * *
14114343 TTA CTA CTA TTA -AA TTA GTA TTA TTA -TA TT- TTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
14114388 TTA TT- TATA TTA CTA TTA TT
1 TTA TTA T-TA TTA TTA TTA TT
14114408 TTCATCGTTT
Statistics
Matches: 84, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
2 7 0.08
3 73 0.87
4 4 0.05
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:14114381 original size:36 final size:38
Alignment explanation
Indices: 14114297--14114391 Score: 106
Period size: 36 Copynumber: 2.5 Consensus size: 38
14114287 GTTTTTTCAC
* *
14114297 TTTATTATTATTACTATTATCATTATTCATTACTTTAT
1 TTTATTATTATTACTATTATAATTAGTCATTACTTTAT
*
14114335 TATTATTATTACTACTATTA-AATTAGT-ATTA-TTATAT
1 T-TTATTATTATTACTATTATAATTAGTCATTACTT-TAT
* *
14114372 TTTACTATTATTATTATTAT
1 TTTATTATTATTACTATTAT
14114392 TTATATTACT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
36 17 0.35
37 8 0.17
38 6 0.12
39 17 0.35
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.59
Consensus pattern (38 bp):
TTTATTATTATTACTATTATAATTAGTCATTACTTTAT
Found at i:14114942 original size:26 final size:26
Alignment explanation
Indices: 14114905--14115040 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
14114895 TGATACAAAT
* *
14114905 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14114931 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
14114957 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14114983 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14115009 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14115035 TGATAA
1 TGATAA
14115041 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:14116522 original size:28 final size:26
Alignment explanation
Indices: 14116491--14116562 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
14116481 AGCAGTTAAC
14116491 TTACTATAATACCCCTATGTATGAAAAA
1 TTACTATAATACCCCTA-G-ATGAAAAA
* * * *
14116519 TTACTGTTATACCCCTAGGTGCAAAA
1 TTACTATAATACCCCTAGATGAAAAA
* *
14116545 TTACCAAAATACCCCTAG
1 TTACTATAATACCCCTAG
14116563 GGTTAAATTG
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
26 20 0.56
27 1 0.03
28 15 0.42
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.29
Consensus pattern (26 bp):
TTACTATAATACCCCTAGATGAAAAA
Found at i:14127601 original size:22 final size:22
Alignment explanation
Indices: 14127562--14127620 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
14127552 GTTTTAAGAA
*
14127562 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
14127583 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
14127605 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
14127621 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:14127637 original size:26 final size:24
Alignment explanation
Indices: 14127591--14127650 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
14127581 ATTTGTTTTA
*
14127591 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
14127615 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
14127641 TTTTTTATTT
1 ATATTTATTT
14127651 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:14130421 original size:43 final size:42
Alignment explanation
Indices: 14130374--14130573 Score: 134
Period size: 43 Copynumber: 4.7 Consensus size: 42
14130364 ACCACCAAAT
* *
14130374 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAA-ATGATGAG
* * * * * * *
14130417 CTTAACCCCCTAAGCGGTAGGGTAACA-AGCCAAATTTACAGAC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAA-TGA-TGAG
* * * * * *
14130460 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTTA-CAA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAATGATGAG
* * * * *
14130501 ATCTAAACCCCTAAGTAGTAAGGAAACAGATCGAAGATGATGGG
1 CT-TAAACCCCTAAGCAGTAGGGTAACAGATCGAA-ATGATGAG
* *
14130545 CCTTAAACCCTTAAGCAATAGGGTAACAG
1 -CTTAAACCCCTAAGCAGTAGGGTAACAG
14130574 GCCAGAAATT
Statistics
Matches: 115, Mismatches: 35, Indels: 13
0.71 0.21 0.08
Matches are distributed among these distances:
41 3 0.03
42 33 0.29
43 55 0.48
44 23 0.20
45 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (42 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAATGATGAG
Found at i:14131504 original size:16 final size:16
Alignment explanation
Indices: 14131483--14131515 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14131473 GCGGCGGCAC
14131483 CTACGGTGGGCAGTGG
1 CTACGGTGGGCAGTGG
14131499 CTACGGTGGGCAGTGG
1 CTACGGTGGGCAGTGG
14131515 C
1 C
14131516 CGGACCTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.21, G:0.48, T:0.18
Consensus pattern (16 bp):
CTACGGTGGGCAGTGG
Found at i:14132154 original size:3 final size:3
Alignment explanation
Indices: 14132140--14132392 Score: 92
Period size: 3 Copynumber: 83.3 Consensus size: 3
14132130 ATTATCAATC
* * * **
14132140 TTA TTC TTA TTA TTA TTA TTA TTA CTA TTA -CA TTCA TTA ACA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
* * * * * *
14132184 TTA TTA TTA TT- TTG CTA -TA CTA TTA TCA TTC TT- TT- TTA CCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * * * * *
14132226 CTA ATA TTA TTGA -TA TTA ATA TATA TTAA TGTA TTG TTA TTT TTA CTA
1 TTA TTA TTA TT-A TTA TTA TTA T-TA TT-A T-TA TTA TTA TTA TTA TTA
* ** * *
14132274 TTA TT- TTC TTA TTA CCA TTA TTA TTA TTA TTCT TTA CGTA TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA -TTA T-TA TTA
* *
14132321 ATA TT- TGTA TTA TTA TTA TTA TTA TTA TTA TTA TTCA TCTT TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA TTA
* * *
14132368 TTA TCA TTA TTA CTA TTA TCA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
14132393 ATTTATACTT
Statistics
Matches: 185, Mismatches: 45, Indels: 40
0.69 0.17 0.15
Matches are distributed among these distances:
2 14 0.08
3 145 0.78
4 24 0.13
5 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:14132774 original size:3 final size:3
Alignment explanation
Indices: 14132766--14132861 Score: 72
Period size: 3 Copynumber: 32.3 Consensus size: 3
14132756 TTTTTTCACT
* * *
14132766 TTA TTA TTA TTA CTA TTA TCA TTA TTCA TTA CT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
* * * * *
14132811 TTA CTA CTA TTA -AA TTA GTA TTA TTA TTA TT- TATA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
*
14132855 TTT TTA T
1 TTA TTA T
14132862 CGTTTTCGTC
Statistics
Matches: 72, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
2 3 0.04
3 65 0.90
4 4 0.06
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:14134138 original size:25 final size:24
Alignment explanation
Indices: 14134068--14134162 Score: 68
Period size: 25 Copynumber: 3.8 Consensus size: 24
14134058 AGCTGTAAAT
* *
14134068 GGTAAGCTC-TTCCGAGCTGAATAA
1 GGTAAGCTCATT-TGAGCTGAGTAA
* *
14134092 GAGTAAGCTCCTCTT-AGTTGAGTAA
1 G-GTAAGCTCAT-TTGAGCTGAGTAA
*
14134117 CGGTAAGCTCATTTGAGCTGAGTATT
1 -GGTAAGCTCATTTGAGCTGAGTA-A
**
14134143 GGTAAGCTCATAAGAGCTGA
1 GGTAAGCTCATTTGAGCTGA
14134163 AATCGGTAAC
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
24 3 0.05
25 51 0.89
26 2 0.04
27 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (24 bp):
GGTAAGCTCATTTGAGCTGAGTAA
Found at i:14134315 original size:22 final size:20
Alignment explanation
Indices: 14134267--14134319 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 20
14134257 TCATGGCAAT
*
14134267 TGTACAATTTACAAACAAATA
1 TGTACAATTTA-AAACAAAAA
14134288 T-T-CAATTTAAAACATATAAA
1 TGTACAATTTAAAACA-A-AAA
14134308 TGTACAATTTAA
1 TGTACAATTTAA
14134320 TTACATGAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 5 0.19
19 8 0.30
20 4 0.15
21 2 0.07
22 8 0.30
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.34
Consensus pattern (20 bp):
TGTACAATTTAAAACAAAAA
Found at i:14138217 original size:5 final size:6
Alignment explanation
Indices: 14138201--14138225 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14138191 CAACTCATCA
14138201 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
14138226 AACTGTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:14139297 original size:31 final size:31
Alignment explanation
Indices: 14139215--14139299 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
14139205 TTCCTGCATT
* *
14139215 AAATTCAACCAAAAACAACAAATATAACATG
1 AAATCCAACCAAAAACAGCAAATATAACATG
14139246 AAATCCAACCAAAAACAGCAAATATAACATG
1 AAATCCAACCAAAAACAGCAAATATAACATG
*
14139277 AAATCCAACCAAAAATAGCAAAT
1 AAATCCAACCAAAAACAGCAAAT
14139300 GTAGCATAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.60, C:0.21, G:0.05, T:0.14
Consensus pattern (31 bp):
AAATCCAACCAAAAACAGCAAATATAACATG
Found at i:14139571 original size:21 final size:21
Alignment explanation
Indices: 14139547--14139592 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
14139537 GCCATTGCTG
*
14139547 CTGCCTCTACCTCCCTCGCTA
1 CTGCCGCTACCTCCCTCGCTA
* * *
14139568 CTGCCGCTGCCTCCGTCGCTG
1 CTGCCGCTACCTCCCTCGCTA
14139589 CTGC
1 CTGC
14139593 ATCCGCTCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.50, G:0.20, T:0.26
Consensus pattern (21 bp):
CTGCCGCTACCTCCCTCGCTA
Found at i:14140031 original size:13 final size:14
Alignment explanation
Indices: 14140005--14140036 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
14139995 ACTAACGACG
14140005 AATTAAACCATTAT
1 AATTAAACCATTAT
14140019 AATTAAA-CATTAT
1 AATTAAACCATTAT
14140032 AATTA
1 AATTA
14140037 TTTCTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:14142843 original size:26 final size:25
Alignment explanation
Indices: 14142829--14142883 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
14142819 TAAACTAAGT
14142829 TTAAATCATTAAAAACATTAAAAACA
1 TTAAATCATTAAAAA-ATTAAAAACA
*
14142855 TTAAATCATTAAAAAATT-AAATCA
1 TTAAATCATTAAAAAATTAAAAACA
14142879 TTAAA
1 TTAAA
14142884 AACATTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 10 0.36
25 3 0.11
26 15 0.54
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (25 bp):
TTAAATCATTAAAAAATTAAAAACA
Found at i:14142849 original size:9 final size:9
Alignment explanation
Indices: 14142835--14142891 Score: 75
Period size: 9 Copynumber: 6.7 Consensus size: 9
14142825 AAGTTTAAAT
14142835 CATTAAAAA
1 CATTAAAAA
14142844 CATTAAAAA
1 CATTAAAAA
*
14142853 CATT-AAAT
1 CATTAAAAA
14142861 CATTAAAAA
1 CATTAAAAA
*
14142870 -ATT-AAAT
1 CATTAAAAA
14142877 CATTAAAAA
1 CATTAAAAA
14142886 CATTAA
1 CATTAA
14142892 TTTTCATTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
7 3 0.07
8 13 0.32
9 25 0.61
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (9 bp):
CATTAAAAA
Found at i:14142851 original size:8 final size:8
Alignment explanation
Indices: 14142829--14142891 Score: 63
Period size: 8 Copynumber: 7.5 Consensus size: 8
14142819 TAAACTAAGT
*
14142829 TTAAATCA
1 TTAAAACA
14142837 TTAAAAACA
1 TT-AAAACA
14142846 TTAAAAACA
1 TT-AAAACA
*
14142855 TTAAATCA
1 TTAAAACA
*
14142863 TTAAAAAA
1 TTAAAACA
*
14142871 TTAAATCA
1 TTAAAACA
14142879 TTAAAAACA
1 TT-AAAACA
14142888 TTAA
1 TTAA
14142892 TTTTCATTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
8 23 0.50
9 23 0.50
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (8 bp):
TTAAAACA
Found at i:14142873 original size:16 final size:17
Alignment explanation
Indices: 14142844--14142891 Score: 89
Period size: 16 Copynumber: 2.9 Consensus size: 17
14142834 TCATTAAAAA
14142844 CATTAAAAACATTAAAT
1 CATTAAAAACATTAAAT
14142861 CATTAAAAA-ATTAAAT
1 CATTAAAAACATTAAAT
14142877 CATTAAAAACATTAA
1 CATTAAAAACATTAA
14142892 TTTTCATTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 16 0.53
17 14 0.47
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.29
Consensus pattern (17 bp):
CATTAAAAACATTAAAT
Found at i:14144199 original size:21 final size:20
Alignment explanation
Indices: 14144175--14144213 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14144165 TATTGAAACT
*
14144175 AAAACTAATACTAATAATAGC
1 AAAACTAATA-AAATAATAGC
14144196 AAAACTAATAAAATAATA
1 AAAACTAATAAAATAATA
14144214 TAGTACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAACTAATAAAATAATAGC
Found at i:14144761 original size:3 final size:3
Alignment explanation
Indices: 14144753--14144796 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
14144743 ACATTAGAAG
14144753 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA -AA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
14144797 TAAAGTAGAG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 4 0.10
3 36 0.90
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:14145256 original size:11 final size:11
Alignment explanation
Indices: 14145223--14145265 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
14145213 AAATCATTTT
14145223 GAAGAGAGAAA
1 GAAGAGAGAAA
* * *
14145234 GAAAAAAAAAA
1 GAAGAGAGAAA
*
14145245 GAAGGGAGAAA
1 GAAGAGAGAAA
14145256 GAAGAGAGAA
1 GAAGAGAGAA
14145266 GGGAGGGGAA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:14146627 original size:13 final size:14
Alignment explanation
Indices: 14146609--14146639 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
14146599 GACCCTTTAA
14146609 AAAAACAGAAATT-
1 AAAAACAGAAATTG
14146622 AAAAACAGAAATTG
1 AAAAACAGAAATTG
14146636 AAAA
1 AAAA
14146640 TAGCTCAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.71, C:0.06, G:0.10, T:0.13
Consensus pattern (14 bp):
AAAAACAGAAATTG
Found at i:14146895 original size:75 final size:74
Alignment explanation
Indices: 14146745--14148003 Score: 747
Period size: 75 Copynumber: 16.5 Consensus size: 74
14146735 AATGTGATTC
* * * * **
14146745 GAGGCTCCACTCACCTCTCGCAATTTGAGTTGA-TTTTCGAAA-ACAGAGATCAAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAATTACCTCA
* *
14146808 GCGTGTCCT
66 ACGTGTCTT
*
14146817 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTTTGAAAGACAGAAATTGAAATTAGCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAGACAGAAATTGAAATTACCTC
*
14146882 AGCGTGTCTT
65 AACGTGTCTT
* *
14146892 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAATTACCTCA
14146957 ACGTGTCTT
66 ACGTGTCTT
* * * * *
14146966 AAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTTGAAAGACAGAAATTGAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTGAAAGACAGAAATTGAAATTACCT
14147031 CAACGTGTCTT
64 CAACGTGTCTT
* * * * ** * *
14147042 GAGGCTCAACTCACTTCTTGCAGTATGAGTTGA-ATTTTG-AA-ACAGAAATAAAAATTATCTTA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAATTACCTCA
* **
14147104 GCGTGTCCC
66 ACGTGTCTT
* *
14147113 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTAAAATTAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAAGACAGAAATTGAAATTAC
* * *
14147178 CTCAGCATGTCCT
62 CTCAACGTGTCTT
* * *
14147191 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAAAAAAATAGACATAAAAACAGAAATTGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT------TTTG----AAAGACAGAAATTGA
* * *
14147256 AAGTGA-CTCAACACGTGAGC-C
56 AA-TTACCTC-A-ACGTG-TCTT
* * * * **
14147277 AAGGCTCAACTCACCTCTCGCAATATAAGTTGGTTTTTTGAAA-A-ATAAATTGACAA--A-CGG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGA-AATTACCTC
** **
14147337 AAATTGGATT
65 AACGTGTCTT
* * * *** * ** * * *** * **
14147347 -A-CCTCAGCGTGTGA-C-C-CG-AGGCTCAACTCACCTTTCACAATATGAGCTGATTTTTTTGA
1 GAGGCTCAAC---TCACCTCTCGCAATATGAGTTGA-TTTTTTGAA-A-GA-CAGA---AATTGA
* * ** * ** *
14147406 TGATAAATTGAAAAT-ACTT
56 -AATTACCTCAACGTGTCTT
* * * *
14147425 CAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAA-ACAAAAATT
1 -GA-G-G-C-TCA-ACTCA-----CCTCTCGCAATATGAGTTGATTTTTTGA-AAGACAGAAATT
* * *
14147488 GAAATTACCTCAGCGT-CCCT
54 GAAATTACCTCAACGTGTCTT
* * *
14147508 GAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTGAAATTACCTC
14147573 AACGTGTCTT
65 AACGTGTCTT
* * *
14147583 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-GTTTTGACAA-ACAAAAATTGAAATAACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAGACAGAAATTGAAATTACCTC
* *
14147646 AGCGTGTCCT
65 AACGTGTCTT
* * *
14147656 GAAGCTCAACTCAGCTCTCGCAATATGAGTTGATGTTTTTGAAAAACAGAAATTGAAGAACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTTGAAAGACAGAAATT--------GAA
* * * ** * *
14147721 ATGGAAAACACCTCAGCGTATT
57 AT---TACCTCAAC-GTGTCTT
* * *
14147743 GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTGAAATTACCTC
*
14147808 AACGTGTATT
65 AACGTGTCTT
* *
14147818 GAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGACAA-ACAAAAATTGAAATTACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAGACAGAAATTGAAATTACCTC
*
14147881 -A-GCGTCTT
65 AACGTGTCTT
* * * *
14147889 AAGGTTCAACTCACCTCTCGCAATATGAGCTGATATTTTTGAAAGACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTTGAAAGACAGAAATTGAAATTACCTC
14147954 AACGTGTCTT
65 AACGTGTCTT
*
14147964 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTCTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTT
14148004 TTGAAACATA
Statistics
Matches: 929, Mismatches: 169, Indels: 175
0.73 0.13 0.14
Matches are distributed among these distances:
67 4 0.00
68 12 0.01
69 4 0.00
70 4 0.00
71 89 0.10
72 57 0.06
73 121 0.13
74 118 0.13
75 188 0.20
76 89 0.10
77 6 0.01
78 62 0.07
79 10 0.01
80 6 0.01
81 1 0.00
82 1 0.00
83 15 0.02
84 23 0.02
85 5 0.01
86 43 0.05
87 54 0.06
88 2 0.00
89 1 0.00
90 6 0.01
91 3 0.00
92 5 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (74 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAATTACCTCA
ACGTGTCTT
Found at i:14147663 original size:73 final size:73
Alignment explanation
Indices: 14147364--14147998 Score: 645
Period size: 73 Copynumber: 8.5 Consensus size: 73
14147354 CGTGTGACCC
* * * *** ** * *
14147364 GAGGCTCAACTCACCTTTCACAATATGAGCTGATTTTT-TTGATGATAAATTGAAAATACTTCAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAA
14147428 CGTGTCTT
66 CGTGTCTT
* * *
14147436 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAA
* *
14147501 CGT-CCCT
66 CGTGTCTT
* *
14147508 GAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAGAAATTGAAAATACCTC
14147573 AACGTGTCTT
64 AACGTGTCTT
* *
14147583 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAGTTTTGACAAACAAAAATTG-AAATAACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAAT-ACCTCA
* *
14147647 GCGTGTCCT
65 ACGTGTCTT
* * *
14147656 GAAGCTCAACTCAGCTCTCGCAATATGAGTTGATGTTTTTGAAAAACAGAAATTGAAGAACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAGAAATT---G---A-AA
* * ** * *
14147721 ATGGAAAACACCTCAGCGTATT
57 AT----ACCTCAAC-GTGTCTT
* *
14147743 GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGA-AAGACAGAAATTGAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAA-ACAGAAATTGAAAATACCT
*
14147807 CAACGTGTATT
63 CAACGTGTCTT
* * *
14147818 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTC-A
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAA
*
14147882 -GCGTCTT
66 CGTGTCTT
* * *
14147889 AAGGTTCAACTCACCTCTCGCAATATGAGCTGATATTTTTGA-AAGACAGAAATTGAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTG--ATTTTTGACAA-ACAGAAATTGAAAATACCT
14147953 CAACGTGTCTT
63 CAACGTGTCTT
*
14147964 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
14147999 CTTTTTTGAA
Statistics
Matches: 470, Mismatches: 67, Indels: 51
0.80 0.11 0.09
Matches are distributed among these distances:
71 33 0.07
72 76 0.16
73 135 0.29
74 34 0.07
75 120 0.26
76 4 0.01
78 1 0.00
80 4 0.01
81 1 0.00
83 4 0.01
84 1 0.00
86 7 0.01
87 50 0.11
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (73 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAA
CGTGTCTT
Found at i:14147717 original size:14 final size:14
Alignment explanation
Indices: 14147694--14147728 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14147684 GTTGATGTTT
14147694 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
14147708 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
*
14147722 TGGAAAA
1 TTGAAAA
14147729 CACCTCAGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:14148114 original size:90 final size:88
Alignment explanation
Indices: 14147936--14148188 Score: 262
Period size: 99 Copynumber: 2.7 Consensus size: 88
14147926 TTTGAAAGAC
* * *
14147936 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTCT
1 AGAAATTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----
*
14148001 TTTTTGAAACATAAATT-AAAAAAA-TG-
62 --TTTGAAACAGAAATTAAAAAAAATTGA
* *
14148027 A-AAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGATTTGATTTG
1 AGAAATTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTG
*
14148091 AAAAGCAGAATTTGTAAGGAAAAAATTGAAAAA
66 -AAA-CAGAA-AT-TAA--AAAAAATTG----A
14148124 TAGAAATTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 -AGAAATTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
14148189 TTTTGAAAAA
Statistics
Matches: 138, Mismatches: 9, Indels: 22
0.82 0.05 0.13
Matches are distributed among these distances:
84 4 0.03
85 3 0.02
86 4 0.03
87 1 0.01
88 1 0.01
89 1 0.01
90 54 0.39
91 7 0.05
92 2 0.01
98 1 0.01
99 60 0.43
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (88 bp):
AGAAATTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTG
AAACAGAAATTAAAAAAAATTGA
Found at i:14148239 original size:75 final size:76
Alignment explanation
Indices: 14148116--14149744 Score: 781
Period size: 73 Copynumber: 21.3 Consensus size: 76
14148106 AAGGAAAAAA
* * * *
14148116 TTGAAAAATAGAAATTGAAAA-TATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
14148180 AGTTGATTTTT
66 AGTTGATTTTT
* * * *
14148191 TTGAAAAACAGAAATT-AAAATTACCTCAATGTGTCCTGAGGCTCAACTCACTTCTCGCAATATT
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
14148255 AGTTGA--TTT
66 AGTTGATTTTT
* * * * * * *
14148264 TTGACAAACAAAAATT-GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCACTATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
14148328 AGTTGATTTTT
66 AGTTGATTTTT
*
14148339 TTGAAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
14148403 AGTTGA--GTT
66 AGTTGATTTTT
* * * *
14148412 TTGACAAACAAAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
* *
14148476 AGTTAATGTTT
66 AGTTGATTTTT
* *** * * *
14148487 TTGAAAAACAGAAATTAAAGAACAGAAATGGAAAACACCTTAGCGTCTTGAGGTTCAACTCACCT
1 TTGAAAAACAGAAATT-----A-A-AAAT-TACCTCAAC---GTGTCTTGAGGCTCAACTCACCT
* *
14148552 CTTGCAATATGAGCTGATTTTT
55 CTCGCAATATGAGTTGATTTTT
* * * *
14148574 TTGAAAGACAAAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
14148638 AGTTGA--TTT
66 AGTTGATTTTT
* * * * *
14148647 TTGACAAACAAAAATT-GAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
14148709 AGCTGATTTTT
66 AGTTGATTTTT
* * * *
14148720 TTGAAAGACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAAAATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
14148784 AGTTGATTCTTTT
66 AGTTGA-T-TTTT
* * ** ** * * * * *
14148797 TTG--AAACATAAATTAAAAA--AACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTG----T--CT-TGAG-G--CTCA-ACTCACCT
* * * **
14148858 CAC-C--TCTCGCAATATGAGTTGAT
55 CTCGCAATAT-G-AGT-TGA-TTTTT
* ** ** * *** *** * *
14148881 TT-AAAAAGCAGAATTTGAAAGGAAAAAATTGAAAACAG-AAATTGAAAAT-ATCTCAACGTGTC
1 TTGAAAAA-CAGAAATT-AAA--AATTACCT--CAAC-GTGTCTTGAGGCTCAACTC-AC--CTC
* *** * ** * ** *
14148943 TTG-AGGCTCAACTCA-CCTC
56 TCGCAATATGAGTTGATTTTT
* *** ** ** ** * ** * * * *
14148962 TCGCAATATGAGTTGATTTTTTTAAAAAACAGAAATTAAAAT-TACCTCAATGTGTCCTGAGGCT
1 TTG-AA-A--AACAGA---AATT-AAAAA-TTACCTCAACGTGT--CT---TGAG-GCTCA-ACT
* * *
14149026 CAACTCACTTCTCGCA-AT-A--TGAGTTGATTT
50 C-AC-CTC-TCGC-AATATGAGTTGA-TT--TTT
* * * * * * *
14149056 TTGACAAACAAAAATT-GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATA
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
14149120 AGCTGATTTTTT
66 AGTTGA-TTTTT
* * * * * *
14149132 TTGAAAACCAGAAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACCTTTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
14149196 AGTTGATATTTTTT
66 AGTTG--A-TTTTT
* * * * * * *
14149210 TTTAAAACCAGAAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
14149274 AGTT-A-ATTT
66 AGTTGATTTTT
* * * * *
14149283 TTGACAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTATCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
14149347 AGCTGA-TTTT
66 AGTTGATTTTT
* * * * * *
14149357 TTGAAAACCAGAAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
14149421 AGTT-A-ATTT
66 AGTTGATTTTT
* * * *
14149430 TTGACAAACAGAAATT-AAAATTACCTCAGCGTGTCTTGGGGCTCAACTCACCTATCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
14149494 AGCTGATTTTT
66 AGTTGATTTTT
* * * * * *
14149505 TTGAAAACCAGAAATTGAAAA-TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGAAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
14149569 AGTTTATTTTTT
66 AGTTGA-TTTTT
** * * * * * *
14149581 TTTTAAACCAGAAATTGAAAA-TACCTCAGCGTGCCCTGAGACTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
14149645 AGTTGA--TTT
66 AGTTGATTTTT
* * * * * *
14149654 TTGACAAACAGAAATT-GAAATTACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAAAATG
1 TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
14149718 AGTTGA--TTT
66 AGTTGATTTTT
14149727 TTG-AAAACAGAAA-TAAAA
1 TTGAAAAACAGAAATTAAAA
14149745 CATCAGAATA
Statistics
Matches: 1213, Mismatches: 240, Indels: 205
0.73 0.14 0.12
Matches are distributed among these distances:
71 37 0.03
72 30 0.02
73 355 0.29
74 76 0.06
75 288 0.24
76 139 0.11
77 12 0.01
78 85 0.07
79 3 0.00
80 8 0.01
81 7 0.01
82 5 0.00
83 11 0.01
84 23 0.02
85 22 0.02
86 13 0.01
87 62 0.05
88 6 0.00
89 4 0.00
90 5 0.00
91 5 0.00
92 9 0.01
93 5 0.00
94 3 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (76 bp):
TTGAAAAACAGAAATTAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTT
Found at i:14148302 original size:73 final size:74
Alignment explanation
Indices: 14148116--14148796 Score: 764
Period size: 75 Copynumber: 9.0 Consensus size: 74
14148106 AAGGAAAAAA
* * *
14148116 TTGAAAAATAGAAATTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
14148181 GTTGATTTTT
66 GTTGA-TTTT
* ** * * *
14148191 TTGAAAAACAGAAATT-AAAATTACCTCAATGTGTCCTGAGGCTCAACTCACTTCTCGCAATATT
1 TTGAAAAACAAAAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
14148255 AGTTGA-TTT
65 AGTTGATTTT
* * * * *
14148264 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCACTATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
14148329 GTTGATTTTT
66 GTTGA-TTTT
* *
14148339 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
14148404 GTTGA-GTT
66 GTTGATTTT
* *
14148412 TTGACAAACAAAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAAAAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
14148476 AGTTAATGTTT
65 AGTTGAT-TTT
* *** * * *
14148487 TTGAAAAACAGAAATTAAAGAACAGAAATGGAAAACACCTTAGCGTCTTGAGGTTCAACTCACCT
1 TTGAAAAACAAAAATT---G---A-AAAT--ACCTCAGC---GTGTCTTGAGGCTCAACTCACCT
* *
14148552 CTTGCAATATGAGCTGATTTTT
54 CTCGCAATATGAGTTGA-TTTT
* * *
14148574 TTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
14148639 GTTGA-TTT
66 GTTGATTTT
* * *
14148647 TTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
14148710 GCTGATTTTT
66 GTTGA-TTTT
* * * * *
14148720 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAAAATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
14148785 GTTGATTCTT
66 GTTGATT-TT
14148795 TT
1 TT
14148797 TTGAAACATA
Statistics
Matches: 511, Mismatches: 69, Indels: 52
0.81 0.11 0.08
Matches are distributed among these distances:
71 35 0.07
72 4 0.01
73 179 0.35
74 9 0.02
75 213 0.42
78 4 0.01
80 4 0.01
81 1 0.00
82 2 0.00
83 3 0.01
84 5 0.01
87 51 0.10
88 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:14148395 original size:148 final size:148
Alignment explanation
Indices: 14148127--14148882 Score: 817
Period size: 148 Copynumber: 4.9 Consensus size: 148
14148117 TGAAAAATAG
*
14148127 AAATTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * *
14148192 TGAAAAACAGAAATT-AAAATTACCTCAATGTGTCCTGAGGCTCAACTCACTTCTCGCAATATTA
66 TGAAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
14148256 GTTGATTTTTGACAA-ACAA
130 GTTGATTTTTGA-AAGACAA
* * * *
14148275 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCACTATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
14148340 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
66 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
14148405 TTGAGTTTTGACAA-ACAA
131 TTGATTTTTGA-AAGACAA
* * *
14148423 AAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATGTTT
1 AAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*** * * *
14148487 TTGAAAAACAGAAATTAAAGAACAGAAATGGAAAACACCTTAGCGTCTTGAGGTTCAACTCACCT
65 TTGAAAAACAGAAATT---G---A-AAAT--ACCTCAAC---GTGTCTTGAGGCTCAACTCACCT
* *
14148552 CTTGCAATATGAGCTGATTTTTTTGAAAGACAA
118 CTCGCAATATGAGTTGA--TTTTTGAAAGACAA
* *
14148585 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGA--TTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * * *
14148648 TGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
66 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
14148711 CTGATTTTTTTGAAAGACAG
131 TTGA--TTTTTGAAAGACAA
* * *
14148731 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAAAATGAGTTGATTCTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TTT
* * *
14148796 TTTGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
64 TTTG-----------AAAAACA-G-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
14148861 CTCTCGCAATATGAGTTGATTT
116 CTCTCGCAATATGAGTTGATTT
14148883 AAAAAGCAGA
Statistics
Matches: 522, Mismatches: 49, Indels: 59
0.83 0.08 0.09
Matches are distributed among these distances:
146 110 0.21
147 3 0.01
148 204 0.39
149 4 0.01
150 6 0.01
151 3 0.01
153 3 0.01
154 2 0.00
155 4 0.01
157 5 0.01
160 53 0.10
161 7 0.01
162 60 0.11
163 22 0.04
165 36 0.07
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (148 bp):
AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAGACAA
Found at i:14148510 original size:793 final size:776
Alignment explanation
Indices: 14146745--14149653 Score: 3618
Period size: 793 Copynumber: 3.7 Consensus size: 776
14146735 AATGTGATTC
* * * * * *
14146745 GAGGCTCCACTCACCTCTCGCAATTTGAGTTGA--TTTTCG-AAAACAGAGA-TCAAAATTACCT
1 GAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA-TACCT
* * *
14146806 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTTTGAAAGACAGAAATT
65 CAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TGTTTTGAAA-ACAAAAATT
* * * * * *
14146871 GAAATTAGCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAG
128 AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTGAAAA
* * * * * * *
14146936 ACAGAAATTGAAAAT-ACCTCAACGTGTCTTAAGGCTCAACTCACTTCTTGCAGTATGAGTTGAA
193 ACAGAAATTGAAAATCACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTG-A
* *
14147000 TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAG
255 TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAA
* * * * * **
14147065 TATGAGTTGAATTTTG--AAACAGAAATAAAAATTATCTTAGCGTGTCCCAAGGCTCAACTCACC
320 TATGAGTTGATTTTTGACAAACAAAAATTAAAATTACCTCAGCG-GTCTTAAGGCTCAACTCACC
* * *
14147128 TCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATT-AAAATTACCTCAGCATGTCCTG
384 TCTCGCAATATGAGCTGA---TTTTTTTGAAAGACAGAAATTGAAAA-TACCTCAACGTGTCCTG
** * *
14147192 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTAAAAAAATAGACA-TAAAAACAG-A
445 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTTTGAAACATA-A-ATTAAAAAAAGAA
* * * * * *
14147250 AATTGAAAGTGACTCAACACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATAAGTTGGTTT-
508 AATTGAAAAT-ACTC-A-GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTA
* * * * * **
14147313 ---------TTTGAA--AAATAAATTGACAAACGGAAATTG-GATTACCTCAGCGTGTGACCCGA
569 AAAGCAGAATTTGAAGGAAA-AAATTGAAAAACAGAAATTGAAAATATCTCAGCGTGT--CTTGA
* * * ** * *
14147366 GGCTCAACTCACCTTTCACAATATGAGCTGATTTTTTTG---ATGATAAATTGAAAA-TACTTCA
631 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT-AAAATTACCTCA
* * *
14147427 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
695 ATGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
*
14147492 TTACCTCAGCGT-CCCT
760 TTACCTCAGCGTGTCCT
14147508 GAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC
* *
14147573 AACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-GTTTTGACAAACAAAAATTGA
66 AACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTTGA-AAACAAAAATTAA
* * * *
14147637 AATAACCTCAGCGTGTCCTGAAGCTCAACTCAGCTCTCGCAATATGAGTTGATGTTTTTGAAAAA
130 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT-TTTTTGAAAAA
*
14147702 CAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTATTGAGGTTCAACTCACCTCTCGCAAT
194 CAGAAATT---G---A-AAAT------CACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAAT
*
14147767 ATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTATTGAGGCTCAACTCAC
246 ATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
* *
14147832 TTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC-GTCTTAAGGTTC
311 TTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTAAAATTACCTCAGCGGTCTTAAGGCTC
*
14147896 AACTCACCTCTCGCAATATGAGCTGATATTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
376 AACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
* *
14147961 CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTCTTTTTTGAAACATAAATTAAAAAAAT
441 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTTTGAAACATAAATTAAAAAAA-
*
14148026 GAAAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGATTTGATTTG
505 GAAAATTGAAAATA-CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-
*
14148091 AAAAGCAGAATTTGTAAGGAAAAAATTGAAAAATAGAAATTGAAAATATCTCAGCGTGTCTTGAG
568 AAAAGCAGAATTTG-AAGGAAAAAATTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCTTGAG
14148156 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCTCAAT
632 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCTCAAT
*
14148221 GTGTCCTGAGGCTCAACTCACTTCTCGCAATATTAGTTGATTTTTGACAAACAAAAATTGAAATT
697 GTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
14148286 ACCTCAGCGTGTCCT
762 ACCTCAGCGTGTCCT
*
14148301 GAGGCTCAACTCACCTATCGCACTATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC
*
14148366 AACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-GTTTTGACAAACAAAAATTAA
66 AACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTTGA-AAACAAAAATTAA
14148430 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATGTTTTTGAAAAA
130 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT-TTTTTGAAAAA
* *
14148495 CAGAAATTAAAGAACAGAAATGGAAAACACCTTAGCGTCTTGAGGTTCAACTCACCTCTTGCAAT
194 CAGAAATT---G---A-AAAT------CACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAAT
*
14148560 ATGAGCTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
246 ATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-
* * *
14148625 CTT-TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC-GTCTTGAGGTT
310 CTTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTAAAATTACCTCAGCGGTCTTAAGGCT
14148688 CAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTG
375 CAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTG
* * *
14148753 TCTTGAGGCTCAACTCACTTCTCGCAAAATGAGTTGATTCTTTTTTGAAACATAAATTAAAAAAA
440 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTTTGAAACATAAATTAAAAAAA
14148818 CGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
505 -GAAAATTGAAAATA-CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
14148883 AAAAAGCAGAATTTGAAAGGAAAAAATTG-AAAACAGAAATTGAAAATATCTCAACGTGTCTTGA
568 -AAAAGCAGAATTTG-AAGGAAAAAATTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCTTGA
*
14148947 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGAAATTAAAATTACCTCAA
631 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCTCAA
14149012 TGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAAT
696 TGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAAT
14149077 TACCTCAGCGTGTCCT
761 TACCTCAGCGTGTCCT
* * *
14149093 GAGGCTCAACTCACCTATCGCAATATAAGCTGATTTTTTTTGAAAACCAGAAATTGAAAATACCT
1 GAGGCTCAACTCACCTATCGCAATATGAGTTGA-TTTTTTTGAAAAACAGAAATTGAAAATACCT
* * * * * *
14149158 CAGCGTGCCCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATATTTTTTTTTAAAACCAGAA
65 CAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG--A--TGTTTTGAAAA-CAAAA
* *
14149223 ATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTAA-TTTTTG
125 ATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTG
* * * *
14149286 ACAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTT-AACTCACCTATCGCAATATGAG
189 AAAAACAGAAATTGAAAATCACCTCAGC--GTCTTGAGG-TTCAACTCACCTCTCGCAATATGAG
* * *
14149349 CTGA-TTTTTTGAAA-ACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA-TCTC
251 CTGATTTTTTTGAAAGA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACT-TC
* * **
14149411 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTAAAATTACCTCAGCGTGTCTTGGGGCTCAA
314 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTAAAATTACCTCAGCG-GTCTTAAGGCTCAA
* * *
14149476 CTCACCTATCGCAATATGAGCTGATTTTTTTGAAA-ACCAGAAATTGAAAATACCTCAGCGTGAC
378 CTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGA-CAGAAATTGAAAATACCTCAACGTGTC
* * **
14149540 CTGAGGCTCAACTCACCTCTCGAAATATGAGTTTA-T-TTTTTT------T---TT-AAACCAG-
442 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTTTGAAACATAAATTAAAAAAAGA
* *
14149592 AAATTGAAAATACCTCAGCGTGCCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTT
507 AAATTGAAAATA-CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
14149654 TTGACAAACA
Statistics
Matches: 1937, Mismatches: 138, Indels: 134
0.88 0.06 0.06
Matches are distributed among these distances:
763 30 0.02
764 63 0.03
765 25 0.01
766 56 0.03
767 5 0.00
768 1 0.00
771 61 0.03
772 5 0.00
773 69 0.04
774 6 0.00
776 115 0.06
777 76 0.04
778 33 0.02
779 18 0.01
781 1 0.00
782 9 0.00
783 100 0.05
784 34 0.02
785 103 0.05
788 8 0.00
789 42 0.02
790 17 0.01
791 20 0.01
792 293 0.15
793 659 0.34
794 3 0.00
795 1 0.00
796 18 0.01
797 3 0.00
798 59 0.03
799 4 0.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (776 bp):
GAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC
AACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTTGAAAACAAAAATTAAA
ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTGAAAAACA
GAAATTGAAAATCACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
TGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
TTGATTTTTGACAAACAAAAATTAAAATTACCTCAGCGGTCTTAAGGCTCAACTCACCTCTCGCA
ATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATTCTTTTTTGAAACATAAATTAAAAAAAGAAAATTGAAAATACT
CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAAAAGCAGAATTTGAAGG
AAAAAATTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCTCAATGTGTCCTGAGGCTCAACTC
ACTTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCT
Found at i:14148907 original size:90 final size:89
Alignment explanation
Indices: 14148729--14148980 Score: 260
Period size: 98 Copynumber: 2.7 Consensus size: 89
14148719 TTTGAAAGAC
* *
14148729 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAAAATGAGTTGATTCT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----
** *
14148794 TTTTTGAAACATAAATT-AAAAAAA-CG-
62 -TTTAAAAACAGAAATTAAAAAAAATCGA
* *
14148820 A-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTA
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTA
* *
14148884 AAAAGCAGAATTTGAAAGGAAAAAATTGAAAA
66 AAAA-CAGAAATT--AA--AAAAAATCG---A
*
14148916 CAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 -AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
14148981 TTTTAAAAAA
Statistics
Matches: 136, Mismatches: 12, Indels: 19
0.81 0.07 0.11
Matches are distributed among these distances:
85 6 0.04
86 6 0.04
89 1 0.01
90 55 0.40
91 7 0.05
92 1 0.01
97 1 0.01
98 59 0.43
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (89 bp):
AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTA
AAAACAGAAATTAAAAAAAATCGA
Found at i:14149071 original size:73 final size:73
Alignment explanation
Indices: 14148909--14149740 Score: 1059
Period size: 73 Copynumber: 11.2 Consensus size: 73
14148899 AAGGAAAAAA
* * *
14148909 TTGAAAACAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
14148974 TTGATTTTT
66 TTGA-TTTT
* ** *
14148983 TTAAAAAACAGAAATT-AAAATTACCTCAATGTGTCCTGAGGCTCAACTCACTTCTCGCAATATG
1 TT-GAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
14149047 AGTTGA-TTT
64 AGTTGATTTT
* * * *
14149056 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATAA
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
14149121 GCTGATTTTTT
65 GTTGA--TTTT
* *
14149132 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
14149197 GTTGATATTTTTT
65 GTTG--A--TTTT
* * *
14149210 TTTAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
14149275 GTT-AATTT
65 GTTGATTTT
* *
14149283 TTGACAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTATCGCAATATG
1 TTGA-AAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
14149347 AGCTGATTTT
64 AGTTGATTTT
* *
14149357 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
14149422 GTT-AATTT
65 GTTGATTTT
* * *
14149430 TTGACAAACAGAAATT-AAAATTACCTCAGCGTGTCTTGGGGCTCAACTCACCTATCGCAATATG
1 TTGA-AAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
14149494 AGCTGATTTTT
64 AGTTGA-TTTT
* *
14149505 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGAAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
14149570 GTTTATTTTTTT
65 GTTGA---TTTT
* * * *
14149582 TTTAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGACTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
14149647 TTGA-TTT
66 TTGATTTT
* * *
14149654 TTGACAAACAGAAATTGAAATTACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAAAATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
14149719 GTTGA-TTT
65 GTTGATTTT
14149727 TTGAAAACAGAAAT
1 TTGAAAACAGAAAT
14149741 AAAACATCAG
Statistics
Matches: 671, Mismatches: 63, Indels: 50
0.86 0.08 0.06
Matches are distributed among these distances:
72 25 0.04
73 241 0.36
74 77 0.11
75 122 0.18
76 124 0.18
77 10 0.01
78 72 0.11
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:14149646 original size:224 final size:224
Alignment explanation
Indices: 14148909--14149740 Score: 1184
Period size: 224 Copynumber: 3.7 Consensus size: 224
14148899 AAGGAAAAAA
* * * *
14148909 TTGAAAA-CAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * ** *
14148973 GTTGATTTTTTTAAAAAACAGAAATTAAAATTACCTCAATGTGTCCTGAGGCTCAACTCACTTCT
66 GTTGATATTTTTGACAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* *
14149038 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
131 CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAAC
*
14149103 TCACCTATCGCAATATAAGCTGATTTTTT
196 TCACCTATCGCAATATGAGCTGATTTTTT
*
14149132 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
14149197 GTTGATATTTTTTTTTA-AAACCAGAAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCA
66 GTTGATA---TTTTTGACAAA-CAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
* *
14149260 TCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGG
126 CCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGG
*
14149324 CTTAACTCACCTATCGCAATATGAGCTGA--TTTT
190 CTCAACTCACCTATCGCAATATGAGCTGATTTTTT
*
14149357 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGA
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
14149422 GTT-A-ATTTTTGACAAACAGAAATTAAAATTACCTCAGCGTGTCTTGGGGCTCAACTCACCTAT
66 GTTGATATTTTTGACAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* *
14149485 CGCAATATGAGCTGATTTTTTTGA-AAACCAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTC
131 CGCAATATGAGTTGA--TTTTTGACAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
* * * *
14149549 AACTCACCTCTCGAAATATGAGTTTATTTTTT
193 AACTCACCTATCGCAATATGAGCTGATTTTTT
** *
14149581 TTTTAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGACTCAACTCACCTCTCGCAATATGA
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
14149646 GTTG--ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGGCCTGAGGCTCAACTCACCTCT
66 GTTGATATTTTTGACAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
14149709 CGCAAAATGAGTTGATTTTTGA-AAACAGAAAT
131 CGCAATATGAGTTGATTTTTGACAAACAGAAAT
14149741 AAAACATCAG
Statistics
Matches: 549, Mismatches: 44, Indels: 34
0.88 0.07 0.05
Matches are distributed among these distances:
219 4 0.01
220 56 0.10
221 13 0.02
222 68 0.12
223 12 0.02
224 194 0.35
225 70 0.13
226 6 0.01
227 122 0.22
228 4 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (224 bp):
TTGAAAACCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATATTTTTGACAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAAC
TCACCTATCGCAATATGAGCTGATTTTTT
Found at i:14159974 original size:21 final size:20
Alignment explanation
Indices: 14159950--14159988 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14159940 TATTGAAACT
*
14159950 AAAACTAATACTAATAATAGC
1 AAAACTAATA-AAATAATAGC
14159971 AAAACTAATAAAATAATA
1 AAAACTAATAAAATAATA
14159989 TAGTACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAACTAATAAAATAATAGC
Found at i:14160059 original size:24 final size:24
Alignment explanation
Indices: 14160032--14160077 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14160022 TATGAATACG
14160032 TACATAAAATATA-ATATTAAAATA
1 TACATAAAATATATATA-TAAAATA
*
14160056 TACATAATATATATATATAAAA
1 TACATAAAATATATATATAAAA
14160078 CATGTATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (24 bp):
TACATAAAATATATATATAAAATA
Found at i:14160529 original size:3 final size:3
Alignment explanation
Indices: 14160521--14160558 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
14160511 ACATTAGAAG
14160521 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA T
14160559 TAAAGTAGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:14161020 original size:11 final size:11
Alignment explanation
Indices: 14160986--14161027 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
14160976 AAATCATTTT
14160986 GAAGAGAGAAA
1 GAAGAGAGAAA
* *
14160997 GAA-AAAAAAA
1 GAAGAGAGAAA
*
14161007 GAAGGGAGAAA
1 GAAGAGAGAAA
14161018 GAAGAGAGAA
1 GAAGAGAGAA
14161028 GGGAGGGGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:14161190 original size:21 final size:20
Alignment explanation
Indices: 14161149--14161191 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
14161139 GGTAAAATTT
* *
14161149 TTTTATATTTTTATTATTATA
1 TTTTATATTTTTA-AAATATA
14161170 TTTTATATGTTTTAAAATATA
1 TTTTATAT-TTTTAAAATATA
14161191 T
1 T
14161192 AAGTGAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTATATTTTTAAAATATA
Found at i:14164404 original size:55 final size:58
Alignment explanation
Indices: 14164283--14164423 Score: 182
Period size: 60 Copynumber: 2.4 Consensus size: 58
14164273 ATTTTATTAA
*
14164283 TATTTTAAATAAAATAAAATTAATTTGTATAATTTTACAAACTTTTAATAAAATTAATT
1 TATTTTAAATAAAATAAAATTAATTTGTATAATTATACAAACTTTTAATAAAATT-ATT
* *
14164342 TACTTTTAAATAAAATAAAATTAATTTGTATAATTATATAAACTTTTAA-ATAA-T-TT
1 TA-TTTTAAATAAAATAAAATTAATTTGTATAATTATACAAACTTTTAATAAAATTATT
**
14164398 TATTTTATTTAAAAGT-AAATTAATTT
1 TATTTTAAATAAAA-TAAAATTAATTT
14164424 TATTAATCTT
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
55 20 0.27
56 5 0.07
58 1 0.01
59 5 0.07
60 44 0.59
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (58 bp):
TATTTTAAATAAAATAAAATTAATTTGTATAATTATACAAACTTTTAATAAAATTATT
Found at i:14164449 original size:147 final size:147
Alignment explanation
Indices: 14164189--14164529 Score: 594
Period size: 147 Copynumber: 2.3 Consensus size: 147
14164179 TAAAATAATT
*
14164189 TTATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATTTAAACTTTTAAATAATTTTAT
1 TTATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATATAAACTTTTAAATAATTTTAT
* *
14164254 TTTAATTAAAAGTAAATTAATTTTATTAATATTTTAAATAAAATAAAATTAATTTGTATAATTTT
66 TTTAATTAAAAGTAAATTAATTTTATTAATATTTTAAATAAAATAAAATGAATTAGTATAATTTT
14164319 ACAAACTTTTAATAAAA
131 ACAAACTTTTAATAAAA
*
14164336 TTAATT-TACTTTTAAATAAAATAAAATTAATTTGTATAATTATATAAACTTTTAAATAATTTTA
1 TT-ATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATATAAACTTTTAAATAATTTTA
* *
14164400 TTTTATTTAAAAGTAAATTAATTTTATTAATCTTTTAAATAAAATAAAATGAATTAGTATAATTT
65 TTTTAATTAAAAGTAAATTAATTTTATTAATATTTTAAATAAAATAAAATGAATTAGTATAATTT
*
14164465 TATAAACTTTTAATAAAA
130 TACAAACTTTTAATAAAA
*
14164483 TTATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTTTATAA
1 TTATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATATAA
14164530 TTGTGGACGA
Statistics
Matches: 183, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
146 3 0.02
147 177 0.97
148 3 0.02
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (147 bp):
TTATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATATAAACTTTTAAATAATTTTAT
TTTAATTAAAAGTAAATTAATTTTATTAATATTTTAAATAAAATAAAATGAATTAGTATAATTTT
ACAAACTTTTAATAAAA
Found at i:14164898 original size:21 final size:21
Alignment explanation
Indices: 14164874--14164927 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
14164864 TATATACCCT
14164874 AAACCTTAAACCCAAAATAAC
1 AAACCTTAAACCCAAAATAAC
** *
14164895 AAACCCCAAGCCCAAAATAAC
1 AAACCTTAAACCCAAAATAAC
14164916 AAACCTTAAACC
1 AAACCTTAAACC
14164928 ATAAACTTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.54, C:0.33, G:0.02, T:0.11
Consensus pattern (21 bp):
AAACCTTAAACCCAAAATAAC
Found at i:14165659 original size:18 final size:17
Alignment explanation
Indices: 14165636--14165670 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14165626 AAAGTCAATT
*
14165636 TCAAATATCAAAATAAAA
1 TCAAAT-TCAAAACAAAA
14165654 TCAAATTCAAAACAAAA
1 TCAAATTCAAAACAAAA
14165671 ATAAGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (17 bp):
TCAAATTCAAAACAAAA
Found at i:14165843 original size:41 final size:41
Alignment explanation
Indices: 14165798--14166091 Score: 390
Period size: 41 Copynumber: 7.2 Consensus size: 41
14165788 AACTTTTTGC
* ** **
14165798 GGCGTTTTGACCAAAAACGCCATTATTGCTCGGTTTTTAGT
1 GGCGTTTGGACCTGAAACGCCGCTATTGCTCGGTTTTTAGT
* * *
14165839 GGCGTTTTGACCAGAAAAGCCGCTATTGCTCGGTTTTTAGT
1 GGCGTTTGGACCTGAAACGCCGCTATTGCTCGGTTTTTAGT
* * *
14165880 GGTGTTTGGACCTAAAACGCCGCTATTGCTCGATTTTTAGT
1 GGCGTTTGGACCTGAAACGCCGCTATTGCTCGGTTTTTAGT
* * *
14165921 GGCATTTGGACCTGAAATGCCGCTATTGCTCGATTTTTAGT
1 GGCGTTTGGACCTGAAACGCCGCTATTGCTCGGTTTTTAGT
*
14165962 GGCGTTTGGACCTGAAACGCCGCTATTGCTCGATTTTTAGT
1 GGCGTTTGGACCTGAAACGCCGCTATTGCTCGGTTTTTAGT
* ** * *
14166003 GGCGGTTGGACCTGAAACGCTACTATTTCTCAGTTTTTAGT
1 GGCGTTTGGACCTGAAACGCCGCTATTGCTCGGTTTTTAGT
* *
14166044 GGCGTTTGGACCAGAAACGCCACTATTGCTCGGTTTTTAGT
1 GGCGTTTGGACCTGAAACGCCGCTATTGCTCGGTTTTTAGT
14166085 GGCGTTT
1 GGCGTTT
14166092 TATTTTAAAC
Statistics
Matches: 226, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 226 1.00
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (41 bp):
GGCGTTTGGACCTGAAACGCCGCTATTGCTCGGTTTTTAGT
Found at i:14167169 original size:29 final size:29
Alignment explanation
Indices: 14167135--14167196 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
14167125 ATTTGCGCAC
14167135 AGAAAAATAAGGAGGATTTTTCCTTTGTA
1 AGAAAAATAAGGAGGATTTTTCCTTTGTA
14167164 AGAAAAATAAGGAGGATTTTTCCTTTGTA
1 AGAAAAATAAGGAGGATTTTTCCTTTGTA
14167193 AGAA
1 AGAA
14167197 TATCCATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (29 bp):
AGAAAAATAAGGAGGATTTTTCCTTTGTA
Found at i:14167544 original size:14 final size:15
Alignment explanation
Indices: 14167525--14167563 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
14167515 TATGCTTCGA
14167525 TTTTTTATTTATATT
1 TTTTTTATTTATATT
*
14167540 TTTTTGTTTTTATATT
1 TTTTT-TATTTATATT
*
14167556 ATTTTTAT
1 TTTTTTAT
14167564 AATTTTTATC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTTTATTTATATT
Found at i:14177738 original size:30 final size:33
Alignment explanation
Indices: 14177697--14177772 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 33
14177687 TTAACAATTT
14177697 ATATT-TTATTATTTTTAAA-AGATT-AAAT-TA
1 ATATTATTATTATTTTTAAAGAG-TTAAAATATA
14177727 A-ATTATTATTATTTTTAAAGAGTTAAAATATA
1 ATATTATTATTATTTTTAAAGAGTTAAAATATA
*
14177759 ATATTATTTTTATT
1 ATATTATTATTATT
14177773 AATTTAAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
29 3 0.08
30 17 0.43
31 6 0.15
32 3 0.08
33 11 0.28
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (33 bp):
ATATTATTATTATTTTTAAAGAGTTAAAATATA
Found at i:14182493 original size:22 final size:23
Alignment explanation
Indices: 14182459--14182501 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
14182449 GAACAATTAC
14182459 ATTTTTATATAAAAATAAAATAT
1 ATTTTTATATAAAAATAAAATAT
14182482 ATTTTTAT-TAAAAATAAAAT
1 ATTTTTATATAAAAATAAAAT
14182502 TAGTTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTTTTATATAAAAATAAAATAT
Found at i:14183006 original size:4 final size:4
Alignment explanation
Indices: 14182997--14183028 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
14182987 GCTGATCATC
*
14182997 ACAT ACAT ACAT ACAT ACAT ACAT TCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
14183029 CTATGTTGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (4 bp):
ACAT
Found at i:14183713 original size:22 final size:22
Alignment explanation
Indices: 14183673--14183714 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14183663 TGGCCACCCA
*
14183673 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
14183695 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
14183715 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:14183810 original size:23 final size:20
Alignment explanation
Indices: 14183784--14183874 Score: 60
Period size: 20 Copynumber: 4.2 Consensus size: 20
14183774 GTTTTTGGTT
14183784 TTTTGGAGAAGGATTGTTCTTTG
1 TTTTGGAGAAGG-TT-TT-TTTG
*
14183807 TTTTGGAGGAGGTTTTTTTG
1 TTTTGGAGAAGGTTTTTTTG
*
14183827 TTTTTTGGAG--GTTTTTTTTG
1 --TTTTGGAGAAGGTTTTTTTG
14183847 TTTTTTGGAAAGAAGGTTATTTTTG
1 --TTTTGG--AGAAGGTT-TTTTTG
14183872 TTT
1 TTT
14183875 CTTGGAAAGG
Statistics
Matches: 58, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
20 21 0.36
21 2 0.03
22 12 0.21
23 14 0.24
24 3 0.05
25 6 0.10
ACGTcount: A:0.14, C:0.01, G:0.27, T:0.57
Consensus pattern (20 bp):
TTTTGGAGAAGGTTTTTTTG
Found at i:14183826 original size:20 final size:21
Alignment explanation
Indices: 14183784--14183850 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 21
14183774 GTTTTTGGTT
*
14183784 TTTTGGAGAAGGATTGTTCTTTG
1 TTTTGGAGGAGGATT-TT-TTTG
14183807 TTTTGGAGGAGG-TTTTTTTG
1 TTTTGGAGGAGGATTTTTTTG
** *
14183827 TTTT-TTGGAGGTTTTTTTTG
1 TTTTGGAGGAGGATTTTTTTG
14183847 TTTT
1 TTTT
14183851 TTGGAAAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
19 5 0.12
20 20 0.50
21 2 0.05
22 2 0.05
23 11 0.28
ACGTcount: A:0.10, C:0.01, G:0.28, T:0.60
Consensus pattern (21 bp):
TTTTGGAGGAGGATTTTTTTG
Found at i:14183838 original size:19 final size:20
Alignment explanation
Indices: 14183814--14183855 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
14183804 TTGTTTTGGA
14183814 GGAGG-TTTTTTTGTTTTTT
1 GGAGGTTTTTTTTGTTTTTT
14183833 GGAGGTTTTTTTTGTTTTTT
1 GGAGGTTTTTTTTGTTTTTT
14183853 GGA
1 GGA
14183856 AAGAAGGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.07, C:0.00, G:0.29, T:0.64
Consensus pattern (20 bp):
GGAGGTTTTTTTTGTTTTTT
Found at i:14183863 original size:25 final size:25
Alignment explanation
Indices: 14183835--14183883 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
14183825 TGTTTTTTGG
* *
14183835 AGGTTTTTTTTGTTTTTTGGAAAGA
1 AGGTTATTTTTGTTTCTTGGAAAGA
14183860 AGGTTATTTTTGTTTCTTGGAAAG
1 AGGTTATTTTTGTTTCTTGGAAAG
14183884 GCTAGTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.53
Consensus pattern (25 bp):
AGGTTATTTTTGTTTCTTGGAAAGA
Found at i:14184193 original size:3 final size:3
Alignment explanation
Indices: 14184179--14184264 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
14184169 TGAGAGCTTT
* *
14184179 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
14184223 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
14184265 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:14184217 original size:27 final size:27
Alignment explanation
Indices: 14184178--14184264 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
14184168 TTGAGAGCTT
14184178 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
14184205 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
14184230 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
14184256 -TTATATTAT
1 TTTATATTAT
14184265 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:14184239 original size:21 final size:18
Alignment explanation
Indices: 14184179--14184268 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
14184169 TGAGAGCTTT
*
14184179 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
14184199 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
14184217 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
14184238 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
14184256 TTA-TATTATATAT
1 TTATTATT-TATAT
14184269 GCCCTCTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:14187102 original size:19 final size:19
Alignment explanation
Indices: 14187080--14187126 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
14187070 CTTCCTTTCT
14187080 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
14187099 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
14187118 TTTGCATTA
1 TTTGCATTA
14187127 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:14189922 original size:6 final size:6
Alignment explanation
Indices: 14189911--14189957 Score: 78
Period size: 6 Copynumber: 8.0 Consensus size: 6
14189901 GGAGTTATAT
*
14189911 GGCAAA GGCAAA GGCAAA GGCAAA -GCAAA AGCAAA GGCAAA GGCAAA
1 GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
14189958 AAAAAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
5 5 0.13
6 34 0.87
ACGTcount: A:0.53, C:0.17, G:0.30, T:0.00
Consensus pattern (6 bp):
GGCAAA
Found at i:14189944 original size:23 final size:23
Alignment explanation
Indices: 14189912--14189957 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
14189902 GAGTTATATG
*
14189912 GCAAAGGCAAAGGCAAAGGCAAA
1 GCAAAAGCAAAGGCAAAGGCAAA
14189935 GCAAAAGCAAAGGCAAAGGCAAA
1 GCAAAAGCAAAGGCAAAGGCAAA
14189958 AAAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.54, C:0.17, G:0.28, T:0.00
Consensus pattern (23 bp):
GCAAAAGCAAAGGCAAAGGCAAA
Found at i:14189963 original size:23 final size:23
Alignment explanation
Indices: 14189918--14189963 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
14189908 TATGGCAAAG
**
14189918 GCAAAGGCAAAGGCAAAGCAAAA
1 GCAAAGGCAAAGGCAAAAAAAAA
14189941 GCAAAGGCAAAGGCAAAAAAAAA
1 GCAAAGGCAAAGGCAAAAAAAAA
14189964 AAAACACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.61, C:0.15, G:0.24, T:0.00
Consensus pattern (23 bp):
GCAAAGGCAAAGGCAAAAAAAAA
Found at i:14189974 original size:8 final size:8
Alignment explanation
Indices: 14189963--14189999 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
14189953 GCAAAAAAAA
14189963 AAAAACAC
1 AAAAACAC
14189971 AAAAACAC
1 AAAAACAC
*
14189979 GAAAACAC
1 AAAAACAC
*
14189987 AAAAAAAC
1 AAAAACAC
14189995 AAAAA
1 AAAAA
14190000 ATTCTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.78, C:0.19, G:0.03, T:0.00
Consensus pattern (8 bp):
AAAAACAC
Found at i:14189975 original size:16 final size:16
Alignment explanation
Indices: 14189954--14190000 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
14189944 AAGGCAAAGG
14189954 CAAAAAAAAAAAAACA
1 CAAAAAAAAAAAAACA
* **
14189970 CAAAAACACGAAAACA
1 CAAAAAAAAAAAAACA
14189986 CAAAAAAACAAAAAA
1 CAAAAAAA-AAAAAA
14190001 TTCTAAAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
16 20 0.83
17 4 0.17
ACGTcount: A:0.81, C:0.17, G:0.02, T:0.00
Consensus pattern (16 bp):
CAAAAAAAAAAAAACA
Found at i:14190000 original size:8 final size:8
Alignment explanation
Indices: 14189954--14190000 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
14189944 AAGGCAAAGG
14189954 CAAAAAAA
1 CAAAAAAA
14189962 -AAAAAACA
1 CAAAAAA-A
*
14189970 CAAAAACA
1 CAAAAAAA
* *
14189978 CGAAAACA
1 CAAAAAAA
14189986 CAAAAAAA
1 CAAAAAAA
14189994 CAAAAAA
1 CAAAAAA
14190001 TTCTAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 6 0.18
8 22 0.67
9 5 0.15
ACGTcount: A:0.81, C:0.17, G:0.02, T:0.00
Consensus pattern (8 bp):
CAAAAAAA
Found at i:14191239 original size:66 final size:66
Alignment explanation
Indices: 14191139--14191265 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
14191129 CATTCATATA
*
14191139 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
14191204 C
66 C
*
14191205 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
14191266 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:14191556 original size:86 final size:86
Alignment explanation
Indices: 14191368--14191662 Score: 246
Period size: 86 Copynumber: 3.4 Consensus size: 86
14191358 TGAAGATTTA
* * *
14191368 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCG
1 CAGAGCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGATCTTAAACCCCTAATCA
* *
14191433 GTAGGGTAACAGACCGAATTG
66 GTAGGGAAACAGACCGAAATG
* * * *
14191454 CAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAA-GATCTT-AACCCCTAAAT-
1 CAGAGCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGATCTTAAACCCCT-AATC
*
14191516 AGTAGGGAAACAGATCGAAGATG
65 AGTAGGGAAACAGACCGAA-ATG
* * * * *
14191539 -ATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTAC-AA-G-CCTTAAACCCCT
1 CA-GAGC-TTAACCCCCTAAGCAGTAGGGAAACAGA-TCGAA--GACGAAGGATCTTAAACCCCT
* * * * * *
14191599 AAGCAGTAGGGTAACTGGCTGAAGATTTA
61 AATCAGTAGGGAAACAGACCGAA-A--TG
*
14191628 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGAT
1 CAGAGCTTAACCCCCTAAGCAGTAGGGAAACAGAT
14191663 AAAAATGATG
Statistics
Matches: 168, Mismatches: 28, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
84 24 0.14
85 13 0.08
86 74 0.44
87 26 0.15
88 26 0.15
89 4 0.02
90 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (86 bp):
CAGAGCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGATCTTAAACCCCTAATCA
GTAGGGAAACAGACCGAAATG
Found at i:14191777 original size:88 final size:87
Alignment explanation
Indices: 14191546--14192043 Score: 452
Period size: 88 Copynumber: 5.7 Consensus size: 87
14191536 ATGATGGGCT
* ** *
14191546 TTAACCCCCTAAGCAGTAGGGTAACAAGCCG-AATTTACAAGCCTTAAACCCCTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAATTTACAAATCTTAACCCCCTAAGCAGTAGGG
** * *
14191610 TAACTGGCTGAAGATTTAC-AGATC
66 TAACAAGCCG-A-ATTTACAAG-CC
* * * * * ****
14191634 TTAACCCCCTAAGCAGTAGGGAAAC-AGATAAAAATGA-TGGGCTTTAACCCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAATTTACAAATC-TTAACCCCCTAAGCAGTAGG
14191697 GTAACAAGCCGAATTTACAAGCC
65 GTAACAAGCCGAATTTACAAGCC
* *
14191720 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAA-ATTTACAAATCTTAACCCCCTAAGCAGTAGG
*
14191785 GTAACAAGCCAAATTTACAAGCC
65 GTAACAAGCCGAATTTACAAGCC
* ** *
14191808 TTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAA-ATTTACAAATCTTAACCCCCTAAGCAGTAGG
* *** * * *** *
14191873 GAAAC-AGATAAAAATGATGGGCT
65 GTAACAAG-CCGAATTTACAAGCC
* ** *
14191896 TTAACCCCCTAAGCAGTAGGGTAACAAGCCG-AATTTACAAGCCTTAAACCCCTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAATTTACAAATCTTAACCCCCTAAGCAGTAGGG
* * **
14191960 TAACAGGCTGAAGATTTACAAATC
66 TAACAAGCCG-A-ATTTACAAGCC
* * * *
14191984 TTAACCCCCTAACCAGTAGGGTAACAAGTTG-AATTTACAGATCTTAACCCCTTAAGCAGT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAATTTACAAATCTTAACCCCCTAAGCAGT
14192044 TGGGAAATAG
Statistics
Matches: 334, Mismatches: 66, Indels: 20
0.80 0.16 0.05
Matches are distributed among these distances:
86 61 0.18
87 16 0.05
88 256 0.77
89 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (87 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAATTTACAAATCTTAACCCCCTAAGCAGTAGGG
TAACAAGCCGAATTTACAAGCC
Found at i:14191788 original size:219 final size:219
Alignment explanation
Indices: 14191546--14192043 Score: 919
Period size: 219 Copynumber: 2.3 Consensus size: 219
14191536 ATGATGGGCT
14191546 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGT
14191611 AACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAATGATGGGC
66 AACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAATGATGGGC
14191676 TTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGG
131 TTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGG
14191741 TAACAGGCTGAAGATTTACAAATC
196 TAACAGGCTGAAGATTTACAAATC
*
14191765 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGT
14191830 AACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAATGATGGGC
66 AACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAATGATGGGC
14191895 TTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGG
131 TTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGG
14191960 TAACAGGCTGAAGATTTACAAATC
196 TAACAGGCTGAAGATTTACAAATC
* ** *
14191984 TTAACCCCCTAACCAGTAGGGTAACAAGTTGAATTTAC-AGATCTT-AACCCCTTAAGCAGT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAG-CCTTAAACCCC-TAAGCAGT
14192044 TGGGAAATAG
Statistics
Matches: 271, Mismatches: 6, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
218 8 0.03
219 263 0.97
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (219 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGT
AACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAATGATGGGC
TTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGG
TAACAGGCTGAAGATTTACAAATC
Found at i:14192061 original size:88 final size:88
Alignment explanation
Indices: 14191328--14192062 Score: 426
Period size: 88 Copynumber: 8.4 Consensus size: 88
14191318 ATTCACAAGC
* * * * *
14191328 CTTAAGCCCCTAAGCAATAGGGTAACAG-GCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTA
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATTTACAAATCTTAACCCCCTAAGCAGTA
* * * *
14191392 GGGAAAC-AGATCGAA--GACGAAGGGT
65 GGGTAACAAGCT-GAATTTAC--A-GAT
* * * * * * * * *
14191417 CTTAAACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTTATCTCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATTTACAAATCTTAACCCCCTAAGCAGTAG
* * * *
14191479 GGAAAC-AGATCGAAGATGA-AGAT
66 GGTAACAAGCT-GAA-TTTACAGAT
** * ****
14191502 CTTAA-CCCCTAAATAGTAGGGAAACAGATCGAAGA-TGA-TGGGCTTTAACCCCCTAAGCAGTA
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATTTACAAATC-TTAACCCCCTAAGCAGTA
* *
14191564 GGGTAACAAGCCGAATTTACA-AGC
65 GGGTAACAAGCTGAATTTACAGA-T
* * * * *
14191588 CTTAAACCCCTAAGCAGTAGGGTAACTG-GCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTA
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATTTACAAATCTTAACCCCCTAAGCAGTA
* * * * * * **
14191652 GGGAAAC-AGATAAAAATGA-TGGG
65 GGGTAACAAGCT-GAATTTACAGAT
* * ** *
14191675 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCG-A-ATTTACAAGCCTTAAACCCCTAAGCAGT
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGA-TCGAAGATTTACAAATCTTAACCCCCTAAGCAGT
* *
14191737 AGGGTAACAGGCTGAAGATTTACAAAT
64 AGGGTAACAAGCTG-A-ATTTACAGAT
* * * ** *
14191764 CTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACAAGCCTTAAACCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATTTACAAATCTTAACCCCCTAAGCAGTAG
**
14191827 GGTAACTGGCTGAAGATTTACAGAT
66 GGTAACAAGCTG-A-ATTTACAGAT
** ***
14191852 CTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAATGATGGGC---T-TTAACCCCCTAAGCAGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGAT-CGAA-GATTTACAAATCTTAACCCCCTAAGCAGT
* *
14191913 AGGGTAACAAGCCGAATTTACA-AGC
64 AGGGTAACAAGCTGAATTTACAGA-T
* * * *
14191938 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAATCTTAACCCCCTAACCAGTA
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATTTACAAATCTTAACCCCCTAAGCAGTA
*
14192002 GGGTAACAAGTTGAATTTACAGAT
65 GGGTAACAAGCTGAATTTACAGAT
* * *
14192026 CTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGAT
14192063 GATGGGCCTT
Statistics
Matches: 513, Mismatches: 97, Indels: 73
0.75 0.14 0.11
Matches are distributed among these distances:
84 25 0.05
85 16 0.03
86 138 0.27
87 36 0.07
88 258 0.50
89 34 0.07
90 3 0.01
92 3 0.01
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (88 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATTTACAAATCTTAACCCCCTAAGCAGTAG
GGTAACAAGCTGAATTTACAGAT
Found at i:14192078 original size:88 final size:90
Alignment explanation
Indices: 14191466--14192101 Score: 444
Period size: 88 Copynumber: 7.3 Consensus size: 90
14191456 GATCTTATCT
* * * **
14191466 CCCTAAGCAGTAGGGAAAC-AGATCGAAGA-TGA-AGATCTTAA-CCCCTAAATAGTAGGGAAAC
1 CCCTAAGCAGTAGGGTAACAAGCT-GAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAAC
* *** * *
14191527 AGATCGAAGA-TGATGGGCTTTAACC
65 AGAGCGAAGATTGACAAGCCTTAAAC
* * * *
14191552 CCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACA-AGCCTTAAACCCCTAAGCAGTAGGGTAAC
1 CCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGA-TCTTAACCCCCTAAGCAGTAGGGAAAC
* * * *
14191614 TG-GCTGAAGATTTAC-AGATCTTAACC
65 AGAGC-GAAGATTGACAAG-CCTTAAAC
* * * * * * ** *
14191640 CCCTAAGCAGTAGGGAAAC-AGAT-AAAAATGA-TGGGCTTTAACCCCCTAAGCAGTAGGGTAAC
1 CCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATC-TTAACCCCCTAAGCAGTAGGGAAAC
*
14191702 A-AGCCG-A-ATTTACAAGCCTTAAAC
65 AGAG-CGAAGATTGACAAGCCTTAAAC
* * *
14191726 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAAGCAGTAGGGTAACA
1 CCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
* *
14191791 -AGCCAA-ATTTACAAGCCTTAAAC
66 GAGCGAAGATTGACAAGCCTTAAAC
**
14191814 CCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
* * * *** * *
14191879 GA--TAAAAATGATGGGCTTTAACC
66 GAGCGAAGATTGACAAGCCTTAAAC
* * * *
14191902 CCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACA-AGCCTTAAACCCCTAAGCAGTAGGGTAAC
1 CCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGA-TCTTAACCCCCTAAGCAGTAGGGAAAC
* ** *
14191964 AG-GCTGAAGATTTACAAATCTTAACC
65 AGAGC-GAAGATTGACAAGCCTTAAAC
* * * * *
14191990 CCCTAACCAGTAGGGTAACAAGTTG-A-ATTTACAGATCTTAACCCCTTAAGCAGTTGGGAAATA
1 CCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
* ***
14192053 GATCGAAGA-TGATGGGCCTTAAAC
66 GAGCGAAGATTGACAAGCCTTAAAC
* *
14192077 CCCTAAGTAGTAGGGTAACAGGCTG
1 CCCTAAGCAGTAGGGTAACAAGCTG
14192102 GAAATTACAA
Statistics
Matches: 437, Mismatches: 86, Indels: 53
0.76 0.15 0.09
Matches are distributed among these distances:
84 1 0.00
85 5 0.01
86 89 0.20
87 68 0.16
88 269 0.62
89 5 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (90 bp):
CCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
GAGCGAAGATTGACAAGCCTTAAAC
Found at i:14192110 original size:131 final size:132
Alignment explanation
Indices: 14191328--14192113 Score: 747
Period size: 131 Copynumber: 6.0 Consensus size: 132
14191318 ATTCACAAGC
* * *
14191328 CTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* * * * * * * *
14191393 GGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCG-AATTGCAG
66 GGAAACAGATCGAAGATGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCCGAAATTACAA
14191457 AT
131 AT
* * * * * **
14191459 CTTATCTCCCTAAGCAGTAGGGAAAC-AGATCGAAGA-TGA-AGATCTTAA-CCCCTAAATAGTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGCT-GAAGATTTACAGATCTTAACCCCCTAAGCAGTA
* * * *
14191520 GGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
65 GGGAAACAGATCGAAGATGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCCGAAATTACA
**
14191585 AGC
130 AAT
* **
14191588 CTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* * * * * *
14191653 GGAAACAGAT-AAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
66 GGAAACAGATCGAAGATGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCCGAAATTACAA
**
14191717 GC
131 AT
* * *
14191719 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* * * * *** * *
14191784 GGTAACA-AGCCAA-ATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTA
66 GGAAACAGATCGAAGA-TGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCCGAA-A-TTA
*
14191847 CAGAT
128 CAAAT
* * * * * * **
14191852 CTTAACCCCCTAAGCAGTAGGGAAAC-AGAT-AAAAATGA-TGGGCTTTAACCCCCTAAGCAGTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATC-TTAACCCCCTAAGCAGTA
* * * * *** *
14191914 GGGTAACA-AGCCGAA-TTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTT
65 GGGAAACAGA-TCGAAGATGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCCGAA-A-TT
14191977 ACAAAT
127 ACAAAT
* * * *
14191983 CTTAACCCCCTAACCAGTAGGGTAACAAGTTG-A-ATTTACAGATCTTAACCCCTTAAGCAGTTG
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* * *
14192046 GGAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAGTAGGGTAACAGGCTGGAAATTACA
66 GGAAACAGATCGAAGATGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC-CGAAATTACA
14192111 AAT
130 AAT
14192114 TTCTTTTTCC
Statistics
Matches: 548, Mismatches: 89, Indels: 36
0.81 0.13 0.05
Matches are distributed among these distances:
128 59 0.11
129 41 0.07
130 11 0.02
131 337 0.61
132 68 0.12
133 32 0.06
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (132 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCGAAGATGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCCGAAATTACAA
AT
Found at i:14192232 original size:68 final size:68
Alignment explanation
Indices: 14192115--14192310 Score: 245
Period size: 68 Copynumber: 2.9 Consensus size: 68
14192105 ATTACAAATT
* * *
14192115 TCTTTT-TCCCTGAAATGGCATTGAAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGA
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCA-A
**
14192179 -GGA
65 CAAA
* *
14192182 TCTTTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAATAGATCTCCTTGAAGTTTCAAC
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAAC
14192247 AAA
66 AAA
* * ** *
14192250 CCTCTTCTTCCAAAAATGGCATTGGAGAGGCTAAAAGCCA-AAGCAGATCTCCTTGAAGTTT
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAA-CAGATCTCCTTGAAGTTT
14192311 TAGTGGAAGA
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
67 9 0.08
68 103 0.92
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (68 bp):
TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAAC
AAA
Found at i:14192599 original size:132 final size:132
Alignment explanation
Indices: 14192362--14193468 Score: 1908
Period size: 132 Copynumber: 8.4 Consensus size: 132
14192352 GGAGCAGACT
* * *
14192362 GAAGATAGCAGATCTGACATTCCTATGCTTACAGTGAAGCAGATCCAAGATTTCAGCATGACATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
*
14192427 CCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
14192492 TC
131 TC
* *
14192494 GAAGATAGCAGATCTGACATTCCTGAGCTTACAGTGAAGCAGGTCAAAGATTTCAGCATGGCATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
* * *
14192559 CCTGTGCTTGTAGGGAACAAGTTGAAAACATCAGATTTGGCATCCTTGTGCTTATAGGGAACAAA
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
14192624 TC
131 TC
*
14192626 AAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
* * *
14192691 CCTGTGCTTATAGGGAACAAGTTGAAGACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAGA
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
14192756 TC
131 TC
*
14192758 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
*
14192823 CCTGTGCTTATAGGGAATAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
14192888 TC
131 TC
* * *
14192890 GAAGATAGCAGATCTGACATTCCTGTGCTTATAGTGAAGCAGATCGAAGATTTCAACATGGCATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
*
14192955 CCTGTGCTTATAGGGAATAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
14193020 TC
131 TC
*
14193022 GAAGATAGCAGATCTGGCATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
* * **
14193087 CCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTTTGCTTATAGGGAACGGA
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
14193152 TC
131 TC
14193154 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
** **
14193219 CCTGTGCTTATAGGGAACAAGTTGAAAACAATAGATTTGGCATCCCTGTGCTTATAGGGAACGGA
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
14193284 TC
131 TC
* * *
14193286 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGACATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
**
14193351 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACGGA
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
14193416 TC
131 TC
*
14193418 GAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
14193469 AACGGATATC
Statistics
Matches: 930, Mismatches: 45, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 930 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAA
TC
Found at i:14193855 original size:22 final size:22
Alignment explanation
Indices: 14193815--14193856 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14193805 TGGCCACCCA
*
14193815 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
14193837 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
14193857 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:14193977 original size:22 final size:21
Alignment explanation
Indices: 14193949--14193999 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
14193939 ATGATTGTTC
14193949 TTTGTTTTGGAGGAGGTTTTTT
1 TTTGTTTTGGA-GAGGTTTTTT
**
14193971 TTTGTTTTTTAGAGGTTTTTT
1 TTTGTTTTGGAGAGGTTTTTT
14193992 TTTGTTTT
1 TTTGTTTT
14194000 TTGGAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.69
Consensus pattern (21 bp):
TTTGTTTTGGAGAGGTTTTTT
Found at i:14194000 original size:22 final size:21
Alignment explanation
Indices: 14193961--14194001 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
14193951 TGTTTTGGAG
14193961 GAGGTTTTTTTTTGTTTTTTA
1 GAGGTTTTTTTTTGTTTTTTA
14193982 GAGGTTTTTTTTTGTTTTTT
1 GAGGTTTTTTTTTGTTTTTT
14194002 GGAAAGAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.07, C:0.00, G:0.20, T:0.73
Consensus pattern (21 bp):
GAGGTTTTTTTTTGTTTTTTA
Found at i:14194346 original size:3 final size:3
Alignment explanation
Indices: 14194332--14194415 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
14194322 GAGCTTCGTT
* *
14194332 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
14194376 TT- TCTCA -TA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A TTA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
14194416 ATATGCCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 22
0.72 0.04 0.24
Matches are distributed among these distances:
2 8 0.12
3 53 0.80
4 5 0.08
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:14194661 original size:20 final size:20
Alignment explanation
Indices: 14194638--14194677 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14194628 TATATTAGTG
*
14194638 TATATTTTTATGTATATATA
1 TATATTTATATGTATATATA
*
14194658 TATATTTATATTTATATATA
1 TATATTTATATGTATATATA
14194678 GTATTGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (20 bp):
TATATTTATATGTATATATA
Found at i:14194665 original size:18 final size:18
Alignment explanation
Indices: 14194638--14194682 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
14194628 TATATTAGTG
* *
14194638 TATATTTTTATGTATATA
1 TATATATTTATATATATA
*
14194656 TATATATTTATATTTATA
1 TATATATTTATATATATA
14194674 TATAGTATT
1 TATA-TATT
14194683 GTTTTTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (18 bp):
TATATATTTATATATATA
Found at i:14194781 original size:2 final size:2
Alignment explanation
Indices: 14194776--14194811 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
14194766 GTATTTCTAT
* *
14194776 TA TA TA CA TA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14194812 GTATTATTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14196441 original size:2 final size:2
Alignment explanation
Indices: 14196434--14196470 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
14196424 TAATTCTTGA
14196434 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14196471 AGTTTTACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14197207 original size:17 final size:17
Alignment explanation
Indices: 14197182--14197233 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
14197172 CTCAAATTAC
*
14197182 AAATATTATATAAATTT
1 AAATTTTATATAAATTT
*
14197199 AAATTTTATATTAATATT
1 AAATTTTATATAAAT-TT
**
14197217 AAA-TAAATATAAATTT
1 AAATTTTATATAAATTT
14197233 A
1 A
14197234 TTAATGTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 3 0.10
17 21 0.72
18 5 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AAATTTTATATAAATTT
Found at i:14197254 original size:25 final size:25
Alignment explanation
Indices: 14197183--14197248 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 25
14197173 TCAAATTACA
* *
14197183 AATATTATATAAATTTAAATTTTATATT
1 AATATTAAATAAATATAAA--TT-TATT
14197211 AATATTAAATAAATATAAATTTATT
1 AATATTAAATAAATATAAATTTATT
*
14197236 AATGTTAAATAAA
1 AATATTAAATAAA
14197249 ATTAAAAATC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
25 16 0.46
26 2 0.06
28 17 0.49
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
AATATTAAATAAATATAAATTTATT
Found at i:14201581 original size:53 final size:53
Alignment explanation
Indices: 14201440--14201573 Score: 207
Period size: 53 Copynumber: 2.5 Consensus size: 53
14201430 ATAAGTGCGC
* **
14201440 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
14201493 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
14201546 CCGTATAAGACCAT-GTCTGGGATATGGC
1 CCGTATAAGACCATAG-CTGGGCTATGGC
14201574 TTTGGTATGA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
52 1 0.01
53 74 0.99
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:14204859 original size:42 final size:42
Alignment explanation
Indices: 14204799--14204878 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
14204789 CTATAAGTAA
*
14204799 AGATGACTTAATTGCTAATAAATTCCTTTAATTAACCTGTAG
1 AGATGACTTAATTACTAATAAATTCCTTTAATTAACCTGTAG
*
14204841 AGATGGCTTAATTACTAATAAATTCCTTTAATTAACCT
1 AGATGACTTAATTACTAATAAATTCCTTTAATTAACCT
14204879 TTCTCATGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (42 bp):
AGATGACTTAATTACTAATAAATTCCTTTAATTAACCTGTAG
Found at i:14209860 original size:26 final size:24
Alignment explanation
Indices: 14209830--14209879 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
14209820 AAATAAAAAA
*
14209830 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
14209856 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
14209880 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:14209899 original size:21 final size:21
Alignment explanation
Indices: 14209850--14209908 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
14209840 ATAATAAATC
*
14209850 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
14209870 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
14209892 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
14209909 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:14210943 original size:2 final size:2
Alignment explanation
Indices: 14210936--14210969 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
14210926 CATTTATACT
*
14210936 TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14210970 GAGTTTAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:14218647 original size:20 final size:22
Alignment explanation
Indices: 14218604--14218644 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14218594 ATTTTTTGAG
**
14218604 TCTATATTTTTGTCTAAACCCT
1 TCTATATTTTTGAATAAACCCT
14218626 TCTAT-TTTTTGAATAAACC
1 TCTATATTTTTGAATAAACC
14218645 TTCAAACTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.27, C:0.20, G:0.05, T:0.49
Consensus pattern (22 bp):
TCTATATTTTTGAATAAACCCT
Found at i:14221710 original size:18 final size:19
Alignment explanation
Indices: 14221680--14221719 Score: 73
Period size: 18 Copynumber: 2.2 Consensus size: 19
14221670 ATAAGGAAGA
14221680 AAAGAAGAAGAGAAGAAAG
1 AAAGAAGAAGAGAAGAAAG
14221699 AAAGAA-AAGAGAAGAAAG
1 AAAGAAGAAGAGAAGAAAG
14221717 AAA
1 AAA
14221720 ATGTATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (19 bp):
AAAGAAGAAGAGAAGAAAG
Found at i:14226957 original size:60 final size:61
Alignment explanation
Indices: 14226827--14226958 Score: 194
Period size: 60 Copynumber: 2.2 Consensus size: 61
14226817 ATACTAAACT
* * *
14226827 AAACACAACAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTACAA
1 AAACA-AAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTACAA
* * *
14226889 ACAGAAAAAATTT-TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAA
1 AAACAAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTACAA
14226949 AAACAAAAAA
1 AAACAAAAAA
14226959 AATTACATTC
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
60 52 0.84
61 7 0.11
62 3 0.05
ACGTcount: A:0.57, C:0.11, G:0.01, T:0.31
Consensus pattern (61 bp):
AAACAAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTACAA
Found at i:14229573 original size:131 final size:131
Alignment explanation
Indices: 14229339--14229653 Score: 453
Period size: 131 Copynumber: 2.4 Consensus size: 131
14229329 CTATTCATTC
* *
14229339 AAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
1 AAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCATGCCCTATCGTG
* *
14229404 TTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATAT-TCTTTTGGAATTTCACTCATGTCT
66 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCTC-TTTAGAATTTCACTCATGTCT
14229468 TT
130 TT
*
14229470 AAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCATGCCCTATCGTG
1 AAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCATGCCCTATCGTG
*
14229535 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCTCTTTAGAATTTCACTTATGTTCT
66 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCTCTTTAGAATTTCACTCATG-TCT
*
14229600 CT
130 TT
* * * * * *
14229602 --GAATTC-T-AAAA-TAAGGCAATGTTCGATGTCTAGAAATTCGAGGAATCATGCC
1 AAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCATGCC
14229654 TACTGTACTG
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
127 35 0.21
128 4 0.02
129 1 0.01
130 5 0.03
131 117 0.70
132 6 0.04
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (131 bp):
AAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCATGCCCTATCGTG
CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCTCTTTAGAATTTCACTCATGTCTT
T
Found at i:14230296 original size:3 final size:3
Alignment explanation
Indices: 14230290--14230319 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
14230280 TTTTTTTTCT
14230290 TTC TTC TTC TTC TTC TTC TT- TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
14230320 CATTTCTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Done.