Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 50 of 345
Found at i:14230329 original size:17 final size:18
Alignment explanation
Indices: 14230285--14230331 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 18
14230275 TACCTTTTTT
*
14230285 TTTCTTTCTTCTTCTTCT
1 TTTCTTTCTTCTTCTTCA
14230303 TCTTCTTTTCTTCTTC-TCA
1 T-TTC-TTTCTTCTTCTTCA
14230322 TTTCTTTCTT
1 TTTCTTTCTT
14230332 ATCTTTCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 6 0.23
18 4 0.15
19 6 0.23
20 10 0.38
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTCTTTCTTCTTCTTCA
Found at i:14235004 original size:20 final size:21
Alignment explanation
Indices: 14234968--14235019 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
14234958 TTAGTATCCA
*
14234968 TTAGAAATGTT-AGTATTTGG
1 TTAGAAATTTTGAGTATTTGG
14234988 TTAGAAATTTTGA-TATTTGG
1 TTAGAAATTTTGAGTATTTGG
* *
14235008 ATACAAATTTTG
1 TTAGAAATTTTG
14235020 GCATTGCGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (21 bp):
TTAGAAATTTTGAGTATTTGG
Found at i:14248201 original size:25 final size:25
Alignment explanation
Indices: 14248172--14248220 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
14248162 TAAATTTTAA
14248172 AATT-ATTAATTAAATTTAATAATTT
1 AATTAATTAATTAAATTT-ATAATTT
* *
14248197 AATTAATTGATTATATTTATAATT
1 AATTAATTAATTAAATTTATAATT
14248221 ATAAAAAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (25 bp):
AATTAATTAATTAAATTTATAATTT
Found at i:14250754 original size:17 final size:16
Alignment explanation
Indices: 14250728--14250761 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14250718 TCATCGATGA
14250728 TTCTTCTTTTTTCCTTT
1 TTCTTCTTTTTT-CTTT
*
14250745 TTCTTTTTTTTTCTTT
1 TTCTTCTTTTTTCTTT
14250761 T
1 T
14250762 GAGAAAGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTCTTCTTTTTTCTTT
Found at i:14261954 original size:101 final size:101
Alignment explanation
Indices: 14261822--14262085 Score: 465
Period size: 101 Copynumber: 2.6 Consensus size: 101
14261812 ACTTCTGATC
*
14261822 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACAAATGATA
1 AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACAAATGATA
14261887 AGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
66 AGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
*
14261923 AGTGATAAGTGATAAGTGGCAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACAAATGATA
1 AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACAAATGATA
*
14261988 AGTGGTGGCTTAGCTACTCTTATCTGATCAGTGACA
66 AGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
* * * *
14262024 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
1 AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACAAATG
14262086 TGATCAGTGT
Statistics
Matches: 155, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 155 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (101 bp):
AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACAAATGATA
AGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
Found at i:14261970 original size:51 final size:51
Alignment explanation
Indices: 14261822--14262079 Score: 385
Period size: 51 Copynumber: 5.1 Consensus size: 51
14261812 ACTTCTGATC
* *
14261822 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
* *
14261873 AGTGACAAATGATAAGTGGTAG-CTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
* * * *
14261923 AGTGATAAGTGATAAGTGGCAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
* * *
14261974 AGTGACAAATGATAAGTGGT-GGCTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
* *
14262024 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
14262075 AGTGA
1 AGTGA
14262080 TAAATGTGAT
Statistics
Matches: 183, Mismatches: 22, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
50 88 0.48
51 95 0.52
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
Found at i:14263450 original size:21 final size:23
Alignment explanation
Indices: 14263426--14263467 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
14263416 ATATATAATG
14263426 TAATT-TATAATAC-ATAAAAAT
1 TAATTCTATAATACTATAAAAAT
*
14263447 TAATTCTATACTACTATAAAA
1 TAATTCTATAATACTATAAAA
14263468 TAAACATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 7 0.39
23 6 0.33
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (23 bp):
TAATTCTATAATACTATAAAAAT
Found at i:14263467 original size:22 final size:22
Alignment explanation
Indices: 14263417--14263468 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
14263407 ATTATTTTTA
*
14263417 TATATAATGTAATTTATAATAC
1 TATAAAATGTAATTTATAATAC
*
14263439 -ATAAAAAT-TAATTCTATACTAC
1 TAT-AAAATGTAATT-TATAATAC
14263461 TATAAAAT
1 TATAAAAT
14263469 AAACATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 7 0.28
22 16 0.64
23 2 0.08
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.40
Consensus pattern (22 bp):
TATAAAATGTAATTTATAATAC
Found at i:14264094 original size:22 final size:23
Alignment explanation
Indices: 14264064--14264111 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
14264054 AATAAAAAGT
14264064 ATATAAAATT-AT-TAAATATTAA
1 ATATAAAATTAATATAAATA-TAA
*
14264086 ATATTAAATTAATATAAATATAA
1 ATATAAAATTAATATAAATATAA
14264109 ATA
1 ATA
14264112 AGTATTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 9 0.39
23 8 0.35
24 6 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
ATATAAAATTAATATAAATATAA
Found at i:14264103 original size:17 final size:17
Alignment explanation
Indices: 14264078--14264110 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14264068 AAAATTATTA
14264078 AATATTAAATATTAAATT
1 AATATTAAATA-TAAATT
14264096 AATA-TAAATATAAAT
1 AATATTAAATATAAAT
14264111 AAGTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AATATTAAATATAAATT
Found at i:14264742 original size:29 final size:29
Alignment explanation
Indices: 14264702--14264766 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
14264692 CAAAAGTTTT
* * *
14264702 AAAATACAGAAAATTATTAAAAATATTTA
1 AAAATATAGAAAAGTATAAAAAATATTTA
*
14264731 AAAATATAGAAAAGTGTAAAAAATATTTA
1 AAAATATAGAAAAGTATAAAAAATATTTA
14264760 AAAATAT
1 AAAATAT
14264767 TAATACTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (29 bp):
AAAATATAGAAAAGTATAAAAAATATTTA
Found at i:14276507 original size:22 final size:22
Alignment explanation
Indices: 14276479--14276522 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14276469 CTTCAACTAA
*
14276479 TTTTTTTTTCTCATTTTAGTAC
1 TTTTTTTGTCTCATTTTAGTAC
*
14276501 TTTTTTTGTCTCATTTTGGTAC
1 TTTTTTTGTCTCATTTTAGTAC
14276523 CTAAACTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.11, C:0.14, G:0.09, T:0.66
Consensus pattern (22 bp):
TTTTTTTGTCTCATTTTAGTAC
Found at i:14277915 original size:25 final size:25
Alignment explanation
Indices: 14277868--14277915 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
14277858 CCGTAAGTTC
**
14277868 TTCTTTCTTTCTTTCCTTTTTTCTT
1 TTCTTTCTTTCTTTCCTGGTTTCTT
14277893 TTCTTTCTTTCCTTTCC-GGTTTC
1 TTCTTTCTTT-CTTTCCTGGTTTC
14277916 GTTGGCTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.00, C:0.27, G:0.04, T:0.69
Consensus pattern (25 bp):
TTCTTTCTTTCTTTCCTGGTTTCTT
Found at i:14278000 original size:26 final size:25
Alignment explanation
Indices: 14277953--14278001 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
14277943 ATTCATTCTT
* *
14277953 TTATTATACTTACTTTATTATTATA
1 TTATTATACTTACTTAAATATTATA
*
14277978 TTATATATATTTACTTAAATATTA
1 TTAT-TATACTTACTTAAATATTA
14278002 AGTAAAACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (25 bp):
TTATTATACTTACTTAAATATTATA
Found at i:14279285 original size:20 final size:20
Alignment explanation
Indices: 14279253--14279290 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14279243 TGTTTCACAT
14279253 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
14279273 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
14279291 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:14279802 original size:18 final size:18
Alignment explanation
Indices: 14279779--14279818 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
14279769 ACTTTTTTAC
14279779 TTCTA-TCACAATTCCAAT
1 TTCTATTCACAATT-CAAT
*
14279797 TTCTATTCATAATTCAAT
1 TTCTATTCACAATTCAAT
14279815 TTCT
1 TTCT
14279819 TTTTCTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (18 bp):
TTCTATTCACAATTCAAT
Found at i:14279990 original size:39 final size:40
Alignment explanation
Indices: 14279947--14280057 Score: 111
Period size: 38 Copynumber: 2.8 Consensus size: 40
14279937 CGGATAGTTT
*
14279947 GAAGTAATAGTTGACACCCAGTGTCTCATCG-GCCTAGCC
1 GAAGTAATAGTTGACACCCAGTGTCTCATCGAACCTAGCC
** ** * *
14279986 GAAGTAA-AGTTGGTACCCAGTACCTCATCGAATCTATCC
1 GAAGTAATAGTTGACACCCAGTGTCTCATCGAACCTAGCC
*
14280025 GAAGGAATTTAG-TGACACCCAGTGTCTCATCGA
1 GAAGTAA--TAGTTGACACCCAGTGTCTCATCGA
14280058 CTCGAGGTCG
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
38 19 0.34
39 18 0.32
41 17 0.30
42 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (40 bp):
GAAGTAATAGTTGACACCCAGTGTCTCATCGAACCTAGCC
Found at i:14280533 original size:12 final size:12
Alignment explanation
Indices: 14280518--14280548 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14280508 TTCTCTTTTA
14280518 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
14280530 TTTTTCTTTCTC
1 TTTTTCTTTCCC
14280542 TTTTTCT
1 TTTTTCT
14280549 CCCCTACTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:14285172 original size:7 final size:7
Alignment explanation
Indices: 14285160--14285253 Score: 52
Period size: 7 Copynumber: 12.6 Consensus size: 7
14285150 TATAAAATAG
14285160 ATATTAT
1 ATATTAT
14285167 ATATTAT
1 ATATTAT
14285174 ATTAACTTA-
1 A-T-A-TTAT
14285183 ATATT-T
1 ATATTAT
14285189 AAGTATTAAT
1 -A-TATT-AT
*
14285199 ATATAAT
1 ATATTAT
*
14285206 ATATAAT
1 ATATTAT
14285213 ATATTAT
1 ATATTAT
14285220 ATTATTAT
1 A-TATTAT
14285228 AT-TATATT
1 ATAT-TA-T
14285236 ATATTAT
1 ATATTAT
14285243 AT-TATAT
1 ATAT-TAT
14285250 ATAT
1 ATAT
14285254 AAAACATAAA
Statistics
Matches: 71, Mismatches: 2, Indels: 27
0.71 0.02 0.27
Matches are distributed among these distances:
6 4 0.06
7 37 0.52
8 22 0.31
9 4 0.06
10 4 0.06
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (7 bp):
ATATTAT
Found at i:14285199 original size:14 final size:13
Alignment explanation
Indices: 14285180--14285255 Score: 68
Period size: 14 Copynumber: 5.8 Consensus size: 13
14285170 TTATATTAAC
*
14285180 TTAATATTTAAGTA
1 TTAATATATAA-TA
14285194 TTAATATATAATA
1 TTAATATATAATA
*
14285207 TATAATATATTATA
1 T-TAATATATAATA
* *
14285221 TTATTATATTATA
1 TTAATATATAATA
14285234 TT-ATAT-T-ATA
1 TTAATATATAATA
14285244 TTATATATATAA
1 TTA-ATATATAA
14285256 AACATAAAGT
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
10 5 0.09
11 1 0.02
12 7 0.13
13 17 0.32
14 23 0.43
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (13 bp):
TTAATATATAATA
Found at i:14285209 original size:2 final size:2
Alignment explanation
Indices: 14285197--14285254 Score: 53
Period size: 2 Copynumber: 33.5 Consensus size: 2
14285187 TTAAGTATTA
14285197 AT AT AT A- AT AT AT A- AT AT AT -T AT AT -T AT -T AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14285233 AT -T AT AT -T AT AT -T AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14285255 AAACATAAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 18
0.72 0.00 0.28
Matches are distributed among these distances:
1 9 0.19
2 38 0.81
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:14285214 original size:5 final size:5
Alignment explanation
Indices: 14285198--14285253 Score: 66
Period size: 5 Copynumber: 12.0 Consensus size: 5
14285188 TAAGTATTAA
* *
14285198 TATAT AATA- TATAA TATAT TATA- T-TAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
14285245 TATA- TATAT
1 TATAT TATAT
14285254 AAAACATAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
3 2 0.05
4 9 0.20
5 33 0.75
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (5 bp):
TATAT
Found at i:14287052 original size:9 final size:9
Alignment explanation
Indices: 14287038--14287068 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
14287028 TGCCGAAATT
14287038 TAAAAAAAA
1 TAAAAAAAA
14287047 T-AAAAAAA
1 TAAAAAAAA
14287055 TAAAAAAAA
1 TAAAAAAAA
14287064 TAAAA
1 TAAAA
14287069 TTTTGTTCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:14288204 original size:48 final size:47
Alignment explanation
Indices: 14288148--14288374 Score: 204
Period size: 48 Copynumber: 4.7 Consensus size: 47
14288138 GGGTAAATTA
* * *
14288148 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGG
1 CCGATGCCATGTCC-AGACATGGTCTTACACTAGCTCACATATCAAGG
* * * * *
14288196 CCGATGCCACGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCACATATCAAGG
* * * *
14288244 CCGATACCATGTCCCACACATGGTCTTACACTAGCGCACATATCAACG
1 CCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCACATATCAAGG
* * * * ***
14288292 CCGATGCCATGTTCCAAACATTGTCTTACACTGGCTCTCATATTGTGG
1 CCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATATCAAGG
* *
14288340 CCGACGTCATGTTCCA-ATCATGGTCTTACACTAGC
1 CCGATGCCATG-TCCAGA-CATGGTCTTACACTAGC
14288375 AAACATATTA
Statistics
Matches: 147, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
47 1 0.01
48 143 0.97
49 3 0.02
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (47 bp):
CCGATGCCATGTCCAGACATGGTCTTACACTAGCTCACATATCAAGG
Found at i:14288318 original size:96 final size:96
Alignment explanation
Indices: 14288148--14288330 Score: 249
Period size: 96 Copynumber: 1.9 Consensus size: 96
14288138 GGGTAAATTA
* * * * * * * * *
14288148 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCACGTCCCAG
1 CCGATACCATGTCCCACACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCACGTCCCAA
14288213 ACATGGTCTTACACTAGCTCTCGTCTCAATG
66 ACATGGTCTTACACTAGCTCTCGTCTCAATG
* *
14288244 CCGATACCATGTCCCACACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTTCCAA
1 CCGATACCATGTCCCACACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCACGTCCCAA
* *
14288309 ACATTGTCTTACACTGGCTCTC
66 ACATGGTCTTACACTAGCTCTC
14288331 ATATTGTGGC
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.25
Consensus pattern (96 bp):
CCGATACCATGTCCCACACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCACGTCCCAA
ACATGGTCTTACACTAGCTCTCGTCTCAATG
Found at i:14288343 original size:96 final size:95
Alignment explanation
Indices: 14288148--14288374 Score: 240
Period size: 96 Copynumber: 2.4 Consensus size: 95
14288138 GGGTAAATTA
* * * * * * *
14288148 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCACGTCCCAG
1 CCGATGCCATGTCCCA-ACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCACGTCCCAA
* *
14288213 ACATGGTCTTACACTAGCTCTCGTCTCAATG
65 ACATGGTCTTACACTAGCTCTCATATCAATG
* * *
14288244 CCGATACCATGTCCCACACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCA-ACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCACGTCCCAA
* * **
14288309 ACATTGTCTTACACTGGCTCTCATAT-TGTGG
65 ACATGGTCTTACACTAGCTCTCATATCAAT-G
* * *
14288340 CCGACGTCATGTTCCAATCATGGTCTTACACTAGC
1 CCGATGCCATGTCCCAA-CATGGTCTTACACTAGC
14288375 AAACATATTA
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
95 2 0.02
96 106 0.98
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (95 bp):
CCGATGCCATGTCCCAACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCACGTCCCAAA
CATGGTCTTACACTAGCTCTCATATCAATG
Found at i:14295841 original size:48 final size:48
Alignment explanation
Indices: 14295785--14296067 Score: 311
Period size: 48 Copynumber: 5.9 Consensus size: 48
14295775 GGGTAAATTA
* * * * *
14295785 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGG
* * *
14295833 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGG
*
14295881 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA--ATGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAG-G
* * * *
14295928 ACTGATGCCATGTCCTAGACATGGTCTTACACTAGCGT-ACATATCAACG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCTCATATCAAGG
* * * **
14295977 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGG
* * * * *
14296025 TCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATAT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
14296068 TGTGGCTGAC
Statistics
Matches: 201, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
46 1 0.00
47 2 0.01
48 195 0.97
49 2 0.01
50 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGG
Found at i:14296047 original size:144 final size:143
Alignment explanation
Indices: 14295787--14296117 Score: 412
Period size: 144 Copynumber: 2.3 Consensus size: 143
14295777 GTAAATTACC
* * * *
14295787 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCT-ACATATCAACGCCGATGCCATGTCCCAGAC
* ** *
14295852 ATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
65 ATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCT
14295917 CTCATAATGTGACT
130 CTCATAATGTGACT
*
14295931 GATGCCATGTCCTAGACATGGTCTTACACTAGCGTACATATCAACGCTGATGCCATGTCCCAGAC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGC-TACATATCAACGCCGATGCCATGTCCCAGAC
* * * * *
14295996 ATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCT
65 ATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCT
* * *
14296061 CTTATATTGTGGCT
130 CTCATAATGTGACT
** * * * *
14296075 GACACTATGTTCC-AAACATGATCTTACACTAGCACACATATCA
1 GATGCCATG-TCCTAGACATGGTCTTACACTAGC-TACATATCA
14296118 CCCAAATGTC
Statistics
Matches: 161, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
144 157 0.98
145 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (143 bp):
GATGCCATGTCCTAGACATGGTCTTACACTAGCTACATATCAACGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC
TCATAATGTGACT
Found at i:14296085 original size:48 final size:47
Alignment explanation
Indices: 14295786--14296104 Score: 179
Period size: 48 Copynumber: 6.7 Consensus size: 47
14295776 GGTAAATTAC
* * ** * *
14295786 CGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCACATGTCGA-GGC
1 CGATGCCATGTTCC-AAACATGGTCTTACACTGGCTC-TATAAC-ATTGT
* * * * ** * *
14295834 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCT-ATAACATTGT
* * * *
14295882 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-A-ATGTGA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCT-ATAACAT-TGT
* * * **
14295929 CTGATGCCATG-TCCTAGACATGGTCTTACACTAGCGTAC-ATATCAACG-
1 C-GATGCCATGTTCC-AAACATGGTCTTACACTGGC-T-CTATAACATTGT
* *
14295977 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGT
1 C-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCT-ATAACATTGT
*
14296026 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCT-T-ATATTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTATAACATTGT
* * *
14296071 GGCTGACACTATGTTCCAAACATGATCTTACACT
1 CGATG-C-C-ATGTTCCAAACATGGTCTTACACT
14296105 AGCACACATA
Statistics
Matches: 229, Mismatches: 25, Indels: 34
0.80 0.09 0.12
Matches are distributed among these distances:
45 9 0.04
46 4 0.02
47 8 0.03
48 199 0.87
49 7 0.03
50 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTATAACATTGT
Found at i:14299285 original size:4 final size:4
Alignment explanation
Indices: 14299276--14299347 Score: 62
Period size: 4 Copynumber: 18.0 Consensus size: 4
14299266 TATCTTTCTC
*
14299276 CTTT CTTT CTTT CCCTT -TTT C-TT -TTT CTTT CTTT C-TT CTTT CTGTTT
1 CTTT CTTT CTTT -CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C--TTT
*
14299323 CGTTT CTAT CTTT CTTT CTTT CTTT
1 C-TTT CTTT CTTT CTTT CTTT CTTT
14299348 TTATTACTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
3 9 0.16
4 36 0.63
5 8 0.14
6 4 0.07
ACGTcount: A:0.01, C:0.25, G:0.03, T:0.71
Consensus pattern (4 bp):
CTTT
Found at i:14299328 original size:22 final size:21
Alignment explanation
Indices: 14299268--14299341 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 21
14299258 CTTAGCCTTA
14299268 TCTTTCTCCTTTCTTTCTTTCCCT
1 TCTTTCT-CTTTCTTTCTTT--CT
*
14299292 T-TTTCTTTTTCTTTCTTTCT
1 TCTTTCTCTTTCTTTCTTTCT
* *
14299312 TCTTTCTGTTTCGTTTCTATCTT
1 TCTTTCTCTTTC-TTTCTTTC-T
14299335 TCTTTCT
1 TCTTTCT
14299342 TTCTTTTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
20 3 0.07
21 9 0.20
22 18 0.41
23 13 0.30
24 1 0.02
ACGTcount: A:0.01, C:0.27, G:0.03, T:0.69
Consensus pattern (21 bp):
TCTTTCTCTTTCTTTCTTTCT
Found at i:14299998 original size:20 final size:20
Alignment explanation
Indices: 14299973--14300025 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
14299963 AGGATATTAC
14299973 AAAAATTATTAAAAAGTTGT
1 AAAAATTATTAAAAAGTTGT
* **
14299993 AAAAATTATTTAAATTTTGT
1 AAAAATTATTAAAAAGTTGT
*
14300013 AATTAATTATTAA
1 AA-AAATTATTAA
14300026 TGATTATGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (20 bp):
AAAAATTATTAAAAAGTTGT
Found at i:14301012 original size:17 final size:16
Alignment explanation
Indices: 14300992--14301024 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
14300982 TACCCTAACC
14300992 CTAATCATATATCATAT
1 CTAATCATATAT-ATAT
14301009 CTAATCATATATATAT
1 CTAATCATATATATAT
14301025 AATATAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (16 bp):
CTAATCATATATATAT
Found at i:14313489 original size:21 final size:21
Alignment explanation
Indices: 14313415--14313489 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 21
14313405 AGGCTGCACA
* * * *
14313415 GAAACACATAAGTGCTAAATG
1 GAAACTCATAAGAGCTGAACG
* * * *
14313436 GAAACCCGTAAGGGTTGAACG
1 GAAACTCATAAGAGCTGAACG
* *
14313457 GAAGCTCGTAAGAGCTGAACG
1 GAAACTCATAAGAGCTGAACG
14313478 GAAACTCATAAG
1 GAAACTCATAAG
14313490 GTTAAACTGA
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.40, C:0.17, G:0.27, T:0.16
Consensus pattern (21 bp):
GAAACTCATAAGAGCTGAACG
Found at i:14313511 original size:41 final size:42
Alignment explanation
Indices: 14313445--14313547 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 42
14313435 GGAAACCCGT
* * ** *
14313445 AAGGGTTGAACGGAAGCTCGTAAGAGCTGAACGGAAA-CTCAT
1 AAGGGTTAAACTGAAGCTCAAAAGAGCTGAACGGAAACCT-AA
* *
14313487 AA-GGTTAAACTGAAGCTCAAAAGAGCTTAACTGAAACCTAA
1 AAGGGTTAAACTGAAGCTCAAAAGAGCTGAACGGAAACCTAA
14313528 AAGGGTTAAACTGAAGCTCA
1 AAGGGTTAAACTGAAGCTCA
14313548 TATGAGTTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 31 0.60
42 21 0.40
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.18
Consensus pattern (42 bp):
AAGGGTTAAACTGAAGCTCAAAAGAGCTGAACGGAAACCTAA
Found at i:14313518 original size:21 final size:20
Alignment explanation
Indices: 14313494--14313567 Score: 78
Period size: 21 Copynumber: 3.6 Consensus size: 20
14313484 CATAAGGTTA
14313494 AACTGAAGCTCAAAAGAGCTT
1 AACTGAAGCTCAAAAGAG-TT
* *
14313515 AACTGAAAC-CTAAAAGGGTT
1 AACTGAAGCTC-AAAAGAGTT
* *
14313535 AAACTGAAGCTCATATGAGTT
1 -AACTGAAGCTCAAAAGAGTT
14313556 AACTGAAGCTCA
1 AACTGAAGCTCA
14313568 TGAGAGCTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
20 15 0.34
21 28 0.64
22 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.22
Consensus pattern (20 bp):
AACTGAAGCTCAAAAGAGTT
Found at i:14316502 original size:9 final size:9
Alignment explanation
Indices: 14316473--14316528 Score: 62
Period size: 9 Copynumber: 6.2 Consensus size: 9
14316463 TTTCGTTTCT
14316473 TTATTAAATA
1 TTATT-AATA
*
14316483 TTATTATTA
1 TTATTAATA
14316492 TT-TCTAATA
1 TTAT-TAATA
14316501 TTATTAATA
1 TTATTAATA
*
14316510 TTATTACTA
1 TTATTAATA
14316519 TTATT-ATA
1 TTATTAATA
14316527 TT
1 TT
14316529 TTTTATATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 5 0.12
9 29 0.73
10 6 0.15
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.59
Consensus pattern (9 bp):
TTATTAATA
Found at i:14316534 original size:21 final size:21
Alignment explanation
Indices: 14316510--14316567 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 21
14316500 ATTATTAATA
14316510 TTATTACTATTA-T-TATATTT
1 TTATTA-TATTAGTGTATATTT
14316530 TT-TATATATTAGTGTATATTT
1 TTAT-TATATTAGTGTATATTT
14316551 TTATTATA-TA-TGTATAT
1 TTATTATATTAGTGTATAT
14316568 GTATATATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
19 13 0.38
20 7 0.21
21 13 0.38
22 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (21 bp):
TTATTATATTAGTGTATATTT
Found at i:14316551 original size:19 final size:19
Alignment explanation
Indices: 14316523--14316585 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 19
14316513 TTACTATTAT
*
14316523 TATATTTTTTATATATTAGTG
1 TATATTTTATATATA-TA-TG
14316544 TATATTTT-TATTATATATG
1 TATATTTTATA-TATATATG
* *
14316563 TATA-TGTATATATATATT
1 TATATTTTATATATATATG
14316581 TATAT
1 TATAT
14316586 ATAGTATTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
18 13 0.35
19 8 0.22
20 4 0.11
21 12 0.32
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.60
Consensus pattern (19 bp):
TATATTTTATATATATATG
Found at i:14316806 original size:3 final size:3
Alignment explanation
Indices: 14316798--14316835 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
14316788 TGTATTTCAA
14316798 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
14316836 ATACTAGTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14316883 original size:16 final size:15
Alignment explanation
Indices: 14316844--14316896 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
14316834 TAATACTAGT
*
14316844 GTATATTTTTAT-TA
1 GTATATTTATATATA
*
14316858 -TATATGTATATATA
1 GTATATTTATATATA
14316872 TGTATATTTATATATA
1 -GTATATTTATATATA
14316888 GTACTATTT
1 GTA-TATTT
14316897 TTAATTACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
13 9 0.28
14 2 0.06
15 3 0.09
16 18 0.56
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.57
Consensus pattern (15 bp):
GTATATTTATATATA
Found at i:14317044 original size:23 final size:23
Alignment explanation
Indices: 14317016--14317061 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14317006 CATGTGAATC
14317016 TTTCATGTACATATTAGTATTTT
1 TTTCATGTACATATTAGTATTTT
14317039 TTTCATGTACATATTAGTATTTT
1 TTTCATGTACATATTAGTATTTT
14317062 CTACTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.57
Consensus pattern (23 bp):
TTTCATGTACATATTAGTATTTT
Found at i:14318505 original size:31 final size:31
Alignment explanation
Indices: 14318437--14318498 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
14318427 AGTTAGGCCT
* *
14318437 TAAACTTGGCAATTGTTCCCATATTAGAGTC
1 TAAACTTAGCAATTGTTCCCATATTAGAGGC
*
14318468 TAAACTTAGCAATTGTTTCCATATTA-AGGC
1 TAAACTTAGCAATTGTTCCCATATTAGAGGC
14318498 T
1 T
14318499 TGAACTTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 4 0.14
31 24 0.86
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (31 bp):
TAAACTTAGCAATTGTTCCCATATTAGAGGC
Found at i:14340038 original size:26 final size:26
Alignment explanation
Indices: 14339988--14340095 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
14339978 TGATACAAAT
14339988 TGATAATAGG-TTAGGTAAATGTTCCA
1 TGATAAT-GGATTAGGTAAATGTTCCA
* *
14340014 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
14340040 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
14340066 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
14340092 TGAT
1 TGAT
14340096 TGGAATTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 2 0.03
26 73 0.97
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:14343422 original size:14 final size:14
Alignment explanation
Indices: 14343399--14343428 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14343389 TTGAAAATAT
14343399 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
14343413 GTTGATTTGGATTG
1 GTTGAATTGGATTG
14343427 GT
1 GT
14343429 CTAGGTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:14343853 original size:25 final size:25
Alignment explanation
Indices: 14343794--14343853 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 25
14343784 AAGCTCTTTC
* *
14343794 GAGCCATATAAAGGGAAACTCATGT
1 GAGCCATTTAAAGGAAAACTCATGT
** *
14343819 GAGCTGTTTAACGGAAAACTC-TGGT
1 GAGCCATTTAAAGGAAAACTCAT-GT
14343844 GAGCCATTTA
1 GAGCCATTTA
14343854 TCGGGAAGCT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (25 bp):
GAGCCATTTAAAGGAAAACTCATGT
Found at i:14346114 original size:46 final size:46
Alignment explanation
Indices: 14345890--14346107 Score: 346
Period size: 46 Copynumber: 4.7 Consensus size: 46
14345880 TTATCTTCGA
* * * * * * *
14345890 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
* *
14345936 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
*
14345982 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
14346028 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
14346074 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
14346108 CACATTTGAA
Statistics
Matches: 160, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 160 1.00
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
Found at i:14346219 original size:33 final size:33
Alignment explanation
Indices: 14346169--14346324 Score: 122
Period size: 33 Copynumber: 4.7 Consensus size: 33
14346159 TCTGGTATGA
*
14346169 TGCCATAGTCC-AACTATGGTCTTACACGTGTAT
1 TGCCATAG-CCTAGCTATGGTCTTACACGTGTAT
* * **
14346202 TGCCATGGCCTAGCTATGGTCTTACACTTGTGG
1 TGCCATAGCCTAGCTATGGTCTTACACGTGTAT
* * *
14346235 TACCATATCCTAGATATGGTCTTATCATCAG-G-A-
1 TGCCATAGCCTAGCTATGGTCTTA-CA-C-GTGTAT
* *
14346268 TGCCATAGCCTAGCTATGGTCTTACACATATAT
1 TGCCATAGCCTAGCTATGGTCTTACACGTGTAT
* * * *
14346301 TGTCATGGCCCAGCCATGGTCTTA
1 TGCCATAGCCTAGCTATGGTCTTA
14346325 TCTGTCAATT
Statistics
Matches: 96, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
31 1 0.01
32 5 0.05
33 86 0.90
34 2 0.02
35 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (33 bp):
TGCCATAGCCTAGCTATGGTCTTACACGTGTAT
Found at i:14347959 original size:13 final size:13
Alignment explanation
Indices: 14347943--14347976 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
14347933 AATAAATTAA
14347943 TAAAATATCTTAT
1 TAAAATATCTTAT
14347956 TAAAATATCTTAT
1 TAAAATATCTTAT
14347969 TAAAATAT
1 TAAAATAT
14347977 TAATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAAATATCTTAT
Found at i:14347985 original size:11 final size:12
Alignment explanation
Indices: 14347939--14347986 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 12
14347929 TAATAATAAA
14347939 TTAATAAAATATC
1 TTAATAAAATA-C
*
14347952 TTATTAAAATATC
1 TTAATAAAATA-C
*
14347965 TTATTAAAATA-
1 TTAATAAAATAC
14347976 TTAATAAAATA
1 TTAATAAAATA
14347987 ATATTTATCT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
11 10 0.30
13 23 0.70
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (12 bp):
TTAATAAAATAC
Found at i:14348266 original size:30 final size:30
Alignment explanation
Indices: 14348214--14348282 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
14348204 CATCCTTAAA
* * *
14348214 ATATTTTCACTATTAGTCCTTCAACTTTTT
1 ATATTTACACTATTAGCCCTTCAAATTTTT
14348244 CATATTTACACT-TTAGCCCTTCAAATTTTT
1 -ATATTTACACTATTAGCCCTTCAAATTTTT
14348274 AGTATTTAC
1 A-TATTTAC
14348283 TCTTGTGCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 1 0.03
30 23 0.68
31 10 0.29
ACGTcount: A:0.26, C:0.20, G:0.04, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAGCCCTTCAAATTTTT
Found at i:14349735 original size:148 final size:148
Alignment explanation
Indices: 14349464--14349749 Score: 520
Period size: 148 Copynumber: 1.9 Consensus size: 148
14349454 ACTACAAAAT
14349464 AATATGTGACACAAACAACTTGTTTATTTGCCTCTTTAAGTGATCAACCAGCACTACTTTAACAG
1 AATATGTGACACAAACAACTTGTTTATTTGCCTCTTTAAGTGATCAACCAGCACTACTTTAACAG
*
14349529 CCTTGAAACACTCATTTAAAAGTTGATTCTATTCTATTAATTATCTTGAAATATTCTGAAAGAGA
66 CCTTGAAACACTCATTTAAAAGTTGATTCTATTCTATTAATTATCTTGAAATACTCTGAAAGAGA
14349594 AAGAGAAAAATAATGATG
131 AAGAGAAAAATAATGATG
* * *
14349612 AATATGTGACACCAAA-AACTTGTTTATTTGCCTCTTTAAGTGATCAACTAGCACTGCTTTAATA
1 AATATGTGACA-CAAACAACTTGTTTATTTGCCTCTTTAAGTGATCAACCAGCACTACTTTAACA
14349676 GCCTTGAAACACTCATTTAAAAGTTGATTCTATTCTATTAATTATCTTGAAATACTCTGAAAGAG
65 GCCTTGAAACACTCATTTAAAAGTTGATTCTATTCTATTAATTATCTTGAAATACTCTGAAAGAG
14349741 AAAGAGAAA
130 AAAGAGAAA
14349750 GAGAAAGATA
Statistics
Matches: 133, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
148 129 0.97
149 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.34
Consensus pattern (148 bp):
AATATGTGACACAAACAACTTGTTTATTTGCCTCTTTAAGTGATCAACCAGCACTACTTTAACAG
CCTTGAAACACTCATTTAAAAGTTGATTCTATTCTATTAATTATCTTGAAATACTCTGAAAGAGA
AAGAGAAAAATAATGATG
Found at i:14351377 original size:15 final size:16
Alignment explanation
Indices: 14351345--14351378 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
14351335 GATATGTTCT
14351345 ATTGTTAGAATTAAATA
1 ATTGTTAGAA-TAAATA
14351362 ATTGTTAGAA-AAATA
1 ATTGTTAGAATAAATA
14351377 AT
1 AT
14351379 ATCAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
17 10 0.59
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (16 bp):
ATTGTTAGAATAAATA
Found at i:14351556 original size:21 final size:21
Alignment explanation
Indices: 14351532--14351757 Score: 170
Period size: 21 Copynumber: 10.9 Consensus size: 21
14351522 TTATATTTAG
* *
14351532 CTCTTACGAGCTTCTGTTCAA
1 CTCTTATGAGTTTCTGTTCAA
* * * *
14351553 CTCTTATTAGTTTCCGTTTAG
1 CTCTTATGAGTTTCTGTTCAA
* *
14351574 CTCTTTTGAGTTTCTATTCAA
1 CTCTTATGAGTTTCTGTTCAA
* *
14351595 CTCTTATGAGTTTCCGTTCAG
1 CTCTTATGAGTTTCTGTTCAA
* *
14351616 CTCTTACGAGCTTT-TGTTTAA
1 CTCTTATGAG-TTTCTGTTCAA
* * * * *
14351637 CTCATACGAGTTTTTGTTTAG
1 CTCTTATGAGTTTCTGTTCAA
* * *
14351658 CTCTCACGAGCTTCTGTTCAA
1 CTCTTATGAGTTTCTGTTCAA
*
14351679 CTCTTATGAGTTTCTGTTCAG
1 CTCTTATGAGTTTCTGTTCAA
* * *
14351700 CTCTTATGAGCTTCTATTTAA
1 CTCTTATGAGTTTCTGTTCAA
* *
14351721 CTCTTAAGAGTTTCTATTC-A
1 CTCTTATGAGTTTCTGTTCAA
* *
14351741 -GCTTATGAGCTTCTGTT
1 CTCTTATGAGTTTCTGTT
14351758 AACAATGTAC
Statistics
Matches: 160, Mismatches: 43, Indels: 6
0.77 0.21 0.03
Matches are distributed among these distances:
19 13 0.08
20 4 0.03
21 140 0.88
22 3 0.02
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (21 bp):
CTCTTATGAGTTTCTGTTCAA
Found at i:14351735 original size:42 final size:42
Alignment explanation
Indices: 14351530--14351757 Score: 253
Period size: 42 Copynumber: 5.5 Consensus size: 42
14351520 CTTTATATTT
* * *
14351530 AGCTCTTACGAGCTTCTGTTCAACTCTTATTAGTTTCCGTTT
1 AGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTCTGTTC
** * * *
14351572 AGCTCTTTTGAGTTTCTATTCAACTCTTATGAGTTTCCGTTC
1 AGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTCTGTTC
* * * * * *
14351614 AGCTCTTACGAGCTTTTGTTTAACTCATACGAGTTTTTGTTT
1 AGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTCTGTTC
*
14351656 AGCTCTCACGAGCTTCTGTTCAACTCTTATGAGTTTCTGTTC
1 AGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTCTGTTC
* * * * *
14351698 AGCTCTTATGAGCTTCTATTTAACTCTTAAGAGTTTCTATTC
1 AGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTCTGTTC
*
14351740 AG--CTTATGAGCTTCTGTT
1 AGCTCTTACGAGCTTCTGTT
14351758 AACAATGTAC
Statistics
Matches: 155, Mismatches: 31, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
40 15 0.10
42 140 0.90
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (42 bp):
AGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTCTGTTC
Found at i:14357422 original size:14 final size:14
Alignment explanation
Indices: 14357385--14357423 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
14357375 TTTCCTATTG
*
14357385 TTTTACTATTATAT
1 TTTTACTATTTTAT
*
14357399 TATTACTATTTTAT
1 TTTTACTATTTTAT
*
14357413 TTTTATTATTT
1 TTTTACTATTT
14357424 AGATATGATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTACTATTTTAT
Found at i:14361005 original size:26 final size:22
Alignment explanation
Indices: 14360958--14361009 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 22
14360948 ATTCTTGATT
14360958 TTTAAAATAAAATTTTTAAAAA
1 TTTAAAATAAAATTTTTAAAAA
14360980 TTTAAGAATAAATAGTTATTTAAAAA
1 TTTAA-AATAAA-A-TT-TTTAAAAA
14361006 TTTA
1 TTTA
14361010 TTTTTCGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.19
23 6 0.23
24 1 0.04
25 2 0.08
26 12 0.46
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
TTTAAAATAAAATTTTTAAAAA
Found at i:14370584 original size:25 final size:25
Alignment explanation
Indices: 14370534--14370584 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
14370524 ATACGTGGGT
* * *
14370534 AAACTACACCACACTAATATAGCAA
1 AAACTACACCACACCAATACACCAA
14370559 AAACTACACCACACCAA-AGCACCAA
1 AAACTACACCACACCAATA-CACCAA
14370584 A
1 A
14370585 GTGCCAAGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.53, C:0.33, G:0.04, T:0.10
Consensus pattern (25 bp):
AAACTACACCACACCAATACACCAA
Found at i:14375611 original size:44 final size:42
Alignment explanation
Indices: 14375546--14375697 Score: 110
Period size: 43 Copynumber: 3.5 Consensus size: 42
14375536 ATGTGATATT
* * * *
14375546 GTGTAAGACCATATATTGGACATCGACATCA-ATTTGAGATTTAC
1 GTGTAAGACCATGTCTGGGACATCGACATCATATAT--GATTT-C
** *
14375590 GTGTAAGACCATGTCTGGGACATCGGTATCGTATATGATTTC
1 GTGTAAGACCATGTCTGGGACATCGACATCATATATGATTTC
* * * * *
14375632 GTGTAAGACCCTGTCTGGGACAGT-GGCATCGATGTTTGATTAC
1 GTGTAAGACCATGTCTGGGACA-TCGACATC-ATATATGATTTC
* * *
14375675 ATGTAAGACCACGTATGGGACAT
1 GTGTAAGACCATGTCTGGGACAT
14375698 TGGCATTGTA
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 28 0.32
43 32 0.36
44 25 0.28
45 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATCGACATCATATATGATTTC
Found at i:14375683 original size:43 final size:41
Alignment explanation
Indices: 14375586--14375703 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 41
14375576 AATTTGAGAT
* *
14375586 TTACGTGTAAGACCATGTCTGGGACATCGGTATCGTATATGA
1 TTACGTGTAAGACCCTGTCTGGGACAT-GGCATCGTATATGA
* * *
14375628 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCCTGTCTGGGACA-TGGCATCG-TATATGA
* *
14375671 TTACATGTAAGACCAC-GTATGGGACATTGGCAT
1 TTACGTGTAAGACC-CTGTCTGGGACA-TGGCAT
14375704 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 30 0.47
43 33 0.52
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (41 bp):
TTACGTGTAAGACCCTGTCTGGGACATGGCATCGTATATGA
Found at i:14375912 original size:15 final size:15
Alignment explanation
Indices: 14375892--14375922 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14375882 ATGAAATGTG
*
14375892 AATATGTACAAATGA
1 AATATGAACAAATGA
14375907 AATATGAACAAATGA
1 AATATGAACAAATGA
14375922 A
1 A
14375923 TAAGATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.13, T:0.23
Consensus pattern (15 bp):
AATATGAACAAATGA
Found at i:14375924 original size:14 final size:14
Alignment explanation
Indices: 14375890--14375924 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
14375880 AAATGAAATG
*
14375890 TGAATATGTACAAA
1 TGAATATGAACAAA
14375904 TGAAATATGAACAAA
1 TG-AATATGAACAAA
14375919 TGAATA
1 TGAATA
14375925 AGATGTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.54, C:0.06, G:0.14, T:0.26
Consensus pattern (14 bp):
TGAATATGAACAAA
Found at i:14380567 original size:25 final size:25
Alignment explanation
Indices: 14380536--14380617 Score: 101
Period size: 25 Copynumber: 3.3 Consensus size: 25
14380526 CTGTAAATGG
* * *
14380536 TAAGCTCTTTCGAGCTGAATAACGA
1 TAAGCTCCTCCGAGCTGAATAACAA
*
14380561 TAAGCTCCTCCGAGTTGAATAACAA
1 TAAGCTCCTCCGAGCTGAATAACAA
* * *
14380586 TAAGCTCCTCCGAACTGAGTAACAG
1 TAAGCTCCTCCGAGCTGAATAACAA
14380611 TAAGCTC
1 TAAGCTC
14380618 ATGTGAGTTG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (25 bp):
TAAGCTCCTCCGAGCTGAATAACAA
Found at i:14389775 original size:23 final size:23
Alignment explanation
Indices: 14389745--14389790 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14389735 TCCTAAGAGG
14389745 CTGCAACATGTAAATTGGGCTTA
1 CTGCAACATGTAAATTGGGCTTA
14389768 CTGCAACATGTAAATTGGGCTTA
1 CTGCAACATGTAAATTGGGCTTA
14389791 TCCACCTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (23 bp):
CTGCAACATGTAAATTGGGCTTA
Found at i:14391639 original size:2 final size:2
Alignment explanation
Indices: 14391632--14391673 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
14391622 AATACAGTGA
14391632 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14391674 TAAAACTCCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14391976 original size:20 final size:19
Alignment explanation
Indices: 14391951--14391994 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
14391941 ATTTACATAA
14391951 TTTTATCACTAAATTAATAT
1 TTTTAT-ACTAAATTAATAT
* *
14391971 TTTTATTCTAAATTCATAT
1 TTTTATACTAAATTAATAT
*
14391990 ATTTA
1 TTTTA
14391995 AATTGTGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTATACTAAATTAATAT
Found at i:14392296 original size:23 final size:23
Alignment explanation
Indices: 14392245--14392297 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
14392235 TTTAATCTAG
14392245 TACAA-TATTTTTAATTAATAAT
1 TACAATTATTTTTAATTAATAAT
*
14392267 TATAATTATTTTTAATTAAATAAT
1 TACAATTATTTTTAATT-AATAAT
14392291 T-CAATTA
1 TACAATTA
14392298 ACTTCAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 4 0.15
23 16 0.59
24 7 0.26
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (23 bp):
TACAATTATTTTTAATTAATAAT
Found at i:14398723 original size:31 final size:31
Alignment explanation
Indices: 14398653--14398726 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
14398643 AATATAACAT
* *
14398653 TTGGTACTTGAACTTCACACTTTTTTCTAAT
1 TTGGTACTTAAACTTCACACTTTTTTCTAAG
* *
14398684 TTGATACTTAAACTTGACAC-TTTTTCTTAAG
1 TTGGTACTTAAACTTCACACTTTTTTC-TAAG
14398715 TTGGTACTTAAA
1 TTGGTACTTAAA
14398727 TTTTTTGGAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 6 0.16
31 31 0.84
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (31 bp):
TTGGTACTTAAACTTCACACTTTTTTCTAAG
Found at i:14400275 original size:23 final size:23
Alignment explanation
Indices: 14400249--14400307 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 23
14400239 TACAATTACC
*
14400249 TTTATATAAATTGATGTTACAAT
1 TTTATATAAAATGATGTTACAAT
*
14400272 TTTATAATAGAAATGATGTTTCAAT
1 TTTAT-ATA-AAATGATGTTACAAT
14400297 TTTAT-TAAAAT
1 TTTATATAAAAT
14400308 TTACAAGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 4 0.12
23 7 0.22
24 3 0.09
25 18 0.56
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.47
Consensus pattern (23 bp):
TTTATATAAAATGATGTTACAAT
Found at i:14400532 original size:12 final size:12
Alignment explanation
Indices: 14400515--14400540 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14400505 GAAAGTACTC
14400515 AAAAATTATAAA
1 AAAAATTATAAA
14400527 AAAAATTATAAA
1 AAAAATTATAAA
14400539 AA
1 AA
14400541 TTCAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAATTATAAA
Found at i:14400722 original size:8 final size:8
Alignment explanation
Indices: 14400705--14400734 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
14400695 TAAATTTAAC
14400705 TAAAAA-A
1 TAAAAATA
14400712 TAAAAATA
1 TAAAAATA
14400720 TAAAAATA
1 TAAAAATA
14400728 TAAAAAT
1 TAAAAAT
14400735 TATTAACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
TAAAAATA
Found at i:14400912 original size:14 final size:14
Alignment explanation
Indices: 14400893--14400921 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14400883 TGCCATTGCC
14400893 AACACCATTACTAG
1 AACACCATTACTAG
14400907 AACACCATTACTAG
1 AACACCATTACTAG
14400921 A
1 A
14400922 GCTTTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.21
Consensus pattern (14 bp):
AACACCATTACTAG
Found at i:14401016 original size:13 final size:14
Alignment explanation
Indices: 14400998--14401029 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
14400988 ATAATAAAAT
14400998 ATATTTT-TAATTA
1 ATATTTTATAATTA
14401011 ATATTTTATAATTA
1 ATATTTTATAATTA
14401025 A-ATTT
1 ATATTT
14401030 AAATTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATATTTTATAATTA
Found at i:14401036 original size:32 final size:32
Alignment explanation
Indices: 14401000--14401067 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
14400990 AATAAAATAT
*
14401000 ATTTTTAATTAATA-TTTTA-TAATTAAATTTAA
1 ATTTTTAA-AAATATTTTTATTAATTAAA-TTAA
*
14401032 A-TTTTAAAAATATTTTTATTATTTAAATTAA
1 ATTTTTAAAAATATTTTTATTAATTAAATTAA
14401063 ATTTT
1 ATTTT
14401068 AAGTCAACCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
30 4 0.13
31 16 0.52
32 11 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (32 bp):
ATTTTTAAAAATATTTTTATTAATTAAATTAA
Found at i:14401049 original size:31 final size:30
Alignment explanation
Indices: 14401010--14401069 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
14401000 ATTTTTAATT
14401010 AATATTTTA-TAATTAAATTTAAATTTTAAA
1 AATATTTTATTAATTAAA-TTAAATTTTAAA
*
14401040 AATATTTTTATTATTTAAATTAAATTTTAA
1 AATA-TTTTATTAATTAAATTAAATTTTAA
14401070 GTCAACCGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 4 0.15
31 16 0.59
32 7 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (30 bp):
AATATTTTATTAATTAAATTAAATTTTAAA
Found at i:14401256 original size:19 final size:18
Alignment explanation
Indices: 14401212--14401261 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 18
14401202 TTTAATTGGT
14401212 TTTAT-TTTATAATTTAA
1 TTTATATTTATAATTTAA
*
14401229 -TTATCATTTATTATATTAA
1 TTTAT-ATTTATAAT-TTAA
14401248 TTTATATTTTATAA
1 TTTATA-TTTATAA
14401262 GCTCTAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
16 4 0.15
18 7 0.27
19 5 0.19
20 10 0.38
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATATTTATAATTTAA
Found at i:14405191 original size:31 final size:31
Alignment explanation
Indices: 14405154--14405212 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
14405144 AAAATATTAC
*
14405154 TGAACTATTCAAAAGCTTTCATTTAAGTCAT
1 TGAACTATTCAAAAGCTTTCATTGAAGTCAT
* * *
14405185 TGAACTATTCGATAGCTTTTATTGAAGT
1 TGAACTATTCAAAAGCTTTCATTGAAGT
14405213 TACTGGTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (31 bp):
TGAACTATTCAAAAGCTTTCATTGAAGTCAT
Found at i:14416686 original size:17 final size:16
Alignment explanation
Indices: 14416659--14416692 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14416649 TTATTCACTT
14416659 AATATATTATAATATA
1 AATATATTATAATATA
*
14416675 AATATAATTATACTATA
1 AATAT-ATTATAATATA
14416692 A
1 A
14416693 CATTATTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
AATATATTATAATATA
Found at i:14419469 original size:52 final size:52
Alignment explanation
Indices: 14419404--14419504 Score: 139
Period size: 52 Copynumber: 1.9 Consensus size: 52
14419394 ATCACATCAC
* * *
14419404 ACCGACGCCATAGCCCAGCTATAGTCTTATACTGAAACACGTATCACATTGT
1 ACCGACGCCATAGCCCAGCTATAGCCTTATACGGAAACACATATCACATTGT
* * * *
14419456 ACCGATGCTATAGCCCAGCTATGGCCTTATACGGAAACATATATCACAT
1 ACCGACGCCATAGCCCAGCTATAGCCTTATACGGAAACACATATCACAT
14419505 ATTTTCCGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (52 bp):
ACCGACGCCATAGCCCAGCTATAGCCTTATACGGAAACACATATCACATTGT
Found at i:14427382 original size:17 final size:17
Alignment explanation
Indices: 14427362--14427395 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14427352 AGATTTAGGT
14427362 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
14427379 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
14427396 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:14434095 original size:6 final size:6
Alignment explanation
Indices: 14434084--14434112 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14434074 TCAAATTTAC
14434084 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
14434113 AAACATAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:14435317 original size:18 final size:19
Alignment explanation
Indices: 14435281--14435325 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
14435271 TTAGAAATAT
* *
14435281 AAAAATTGAAAGGTAAAAA
1 AAAAATAGAAAGATAAAAA
14435300 AAAAATAGAAAGATAAAAA
1 AAAAATAGAAAGATAAAAA
14435319 AAAAATA
1 AAAAATA
14435326 CAATTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (19 bp):
AAAAATAGAAAGATAAAAA
Found at i:14435926 original size:2 final size:2
Alignment explanation
Indices: 14435919--14435949 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14435909 TAAGTCTAAA
14435919 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14435950 GTGCTTAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14443961 original size:19 final size:20
Alignment explanation
Indices: 14443937--14443983 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
14443927 TATATAAAAT
14443937 AAAAAAATCATAAT-TACAA
1 AAAAAAATCATAATATACAA
* *
14443956 AAAAAAATTATAATATAGAA
1 AAAAAAATCATAATATACAA
*
14443976 AATAAAAT
1 AAAAAAAT
14443984 AAAATACTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAAAATCATAATATACAA
Found at i:14447516 original size:41 final size:41
Alignment explanation
Indices: 14447459--14447538 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
14447449 TAATCTTAGA
14447459 AACAAGTTACAGATTTGAAATAACATCATTTGACAAAACCT
1 AACAAGTTACAGATTTGAAATAACATCATTTGACAAAACCT
14447500 AACAAGTTACAGATTTGAAATAACATCATTTGACAAAAC
1 AACAAGTTACAGATTTGAAATAACATCATTTGACAAAAC
14447539 TTACTCCTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.26
Consensus pattern (41 bp):
AACAAGTTACAGATTTGAAATAACATCATTTGACAAAACCT
Found at i:14452900 original size:15 final size:15
Alignment explanation
Indices: 14452880--14452926 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
14452870 ATATATATAT
14452880 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
14452895 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
14452910 TTCAATCAATATAAA
1 TTCAATCAATATAAA
14452925 TT
1 TT
14452927 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:14453459 original size:31 final size:32
Alignment explanation
Indices: 14453401--14453464 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
14453391 CATACATTTG
*
14453401 TCATAATTTAATATATTTATTATATAAAAATC
1 TCATAATATAATATATTTATTATATAAAAATC
*
14453433 TCATAATATAAT-TATTTAATTA-ATAAATATC
1 TCATAATATAATATATTT-ATTATATAAAAATC
14453464 T
1 T
14453465 TATTTAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 14 0.48
32 15 0.52
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (32 bp):
TCATAATATAATATATTTATTATATAAAAATC
Found at i:14453996 original size:13 final size:14
Alignment explanation
Indices: 14453978--14454006 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14453968 GATTAACTTC
14453978 ATAAATATTTT-TA
1 ATAAATATTTTCTA
14453991 ATAAATATTTTCTA
1 ATAAATATTTTCTA
14454005 AT
1 AT
14454007 CCATTTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
ATAAATATTTTCTA
Found at i:14456090 original size:13 final size:14
Alignment explanation
Indices: 14456054--14456091 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
14456044 ATTAAACCGT
* *
14456054 TATATATATATATA
1 TATATATTTATGTA
14456068 TATATATTTATGTA
1 TATATATTTATGTA
14456082 TAT-TATTTAT
1 TATATATTTAT
14456092 TTTAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TATATATTTATGTA
Found at i:14456109 original size:26 final size:26
Alignment explanation
Indices: 14456080--14456232 Score: 152
Period size: 26 Copynumber: 6.0 Consensus size: 26
14456070 TATATTTATG
*
14456080 TATATTATTTATTTTAAATTTTTTTA
1 TATATTATTTATTTTAAATTATTTTA
* *
14456106 TATATTATTTATTTTAAACT-CTTT-
1 TATATTATTTATTTTAAATTATTTTA
* * **
14456130 TATA-T-GTTATTTTAAAGTATCATA
1 TATATTATTTATTTTAAATTATTTTA
** *
14456154 TATATTATTTATTTTAAATTGCTTTG
1 TATATTATTTATTTTAAATTATTTTA
*
14456180 TATATTATTTATTTTAAATTGTTTTA
1 TATATTATTTATTTTAAATTATTTTA
** *
14456206 CGTATTATTTATTTCAAATTATTTTA
1 TATATTATTTATTTTAAATTATTTTA
14456232 T
1 T
14456233 CTTATTTACT
Statistics
Matches: 102, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
22 11 0.11
23 2 0.02
24 8 0.08
25 4 0.04
26 77 0.75
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TATATTATTTATTTTAAATTATTTTA
Found at i:14456109 original size:74 final size:74
Alignment explanation
Indices: 14456031--14456197 Score: 189
Period size: 74 Copynumber: 2.3 Consensus size: 74
14456021 TAGATTTCAC
* * *
14456031 ATATATTATTT-TTATTAAAC-CGTTATATATA-TATATATATA-TATTTATGTATATTATTTAT
1 ATATATTATTTATT-TTAAACTC-TTATATATATTAT-TATAAAGTA-TCATATATATTATTTAT
**
14456092 TTTAAATTTTTTT
62 TTTAAATTGCTTT
* * *
14456105 ATATATTATTTATTTTAAACTCTTTTATATGTTATTTTAAAGTATCATATATATTATTTATTTTA
1 ATATATTATTTATTTTAAACTCTTATATATATTATTATAAAGTATCATATATATTATTTATTTTA
14456170 AATTGCTTT
66 AATTGCTTT
*
14456179 GTATATTATTTATTTTAAA
1 ATATATTATTTATTTTAAA
14456198 TTGTTTTACG
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
74 72 0.90
75 8 0.10
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (74 bp):
ATATATTATTTATTTTAAACTCTTATATATATTATTATAAAGTATCATATATATTATTTATTTTA
AATTGCTTT
Found at i:14456140 original size:48 final size:52
Alignment explanation
Indices: 14456078--14456219 Score: 166
Period size: 48 Copynumber: 2.8 Consensus size: 52
14456068 TATATATTTA
* *
14456078 TGTATATTATTTATTTTAAATTTTTTTATATATTATTTATTTTAAACT-CTT
1 TGTATATTAGTTATTTTAAATTATTTTATATATTATTTATTTTAAACTGCTT
* ** *
14456129 T-TATA-T-GTTATTTTAAAGTATCATATATATTATTTATTTTAAATTGCTT
1 TGTATATTAGTTATTTTAAATTATTTTATATATTATTTATTTTAAACTGCTT
* * **
14456178 TGTATATTATTTATTTTAAATTGTTTTACGTATTATTTATTT
1 TGTATATTAGTTATTTTAAATTATTTTATATATTATTTATTT
14456220 CAAATTATTT
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
48 33 0.45
49 5 0.07
50 8 0.11
51 2 0.03
52 26 0.35
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.62
Consensus pattern (52 bp):
TGTATATTAGTTATTTTAAATTATTTTATATATTATTTATTTTAAACTGCTT
Found at i:14456263 original size:50 final size:52
Alignment explanation
Indices: 14456152--14456265 Score: 133
Period size: 50 Copynumber: 2.2 Consensus size: 52
14456142 TAAAGTATCA
* * * * *
14456152 TATATATTATTTATTTTAAATTGCTTTGTATATTATTTATTTTAAATTGTTT
1 TATATATTATTTATTTCAAATTGATTTGTATATTATTTACTTCAAATTGCTT
** *
14456204 TACGTATTATTTATTTCAAATT-ATTT-TATCTTATTTACTTCAAATTGCTT
1 TATATATTATTTATTTCAAATTGATTTGTATATTATTTACTTCAAATTGCTT
*
14456254 TATAAATTATTT
1 TATATATTATTT
14456266 TGTTTCGTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 29 0.57
51 3 0.06
52 19 0.37
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (52 bp):
TATATATTATTTATTTCAAATTGATTTGTATATTATTTACTTCAAATTGCTT
Found at i:14457415 original size:30 final size:30
Alignment explanation
Indices: 14457381--14457441 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
14457371 AATTCCCCAA
* * **
14457381 CCTTTTTACTTTTCCCTTAAAACTTTTACT
1 CCTTTCTACTTTCCCCCCAAAACTTTTACT
14457411 CCTTTCTACTTTCCCCCCAAAACTTTTACT
1 CCTTTCTACTTTCCCCCCAAAACTTTTACT
14457441 C
1 C
14457442 TCCTTCCATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.20, C:0.34, G:0.00, T:0.46
Consensus pattern (30 bp):
CCTTTCTACTTTCCCCCCAAAACTTTTACT
Found at i:14459491 original size:25 final size:26
Alignment explanation
Indices: 14459463--14459518 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
14459453 TATACCTTTC
14459463 TAAATTTAAAATTTTTA-AGT-CTATT
1 TAAATTTAAAATTTTTAGA-TACTATT
* *
14459488 TAAAATTAATATTTTTAGATACTATT
1 TAAATTTAAAATTTTTAGATACTATT
14459514 TAAAT
1 TAAAT
14459519 GTTTCTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (26 bp):
TAAATTTAAAATTTTTAGATACTATT
Found at i:14460357 original size:42 final size:42
Alignment explanation
Indices: 14460298--14460381 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
14460288 GTAATATCTC
*
14460298 GAATTTGGGTCTAACGTCTAGACCGGGTTAGGGACGTTATAA
1 GAATTCGGGTCTAACGTCTAGACCGGGTTAGGGACGTTATAA
*
14460340 GAATTCGGGTCTAACGTCTAGACCGGGTTGGGGACGTTATAA
1 GAATTCGGGTCTAACGTCTAGACCGGGTTAGGGACGTTATAA
14460382 AAACCATTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (42 bp):
GAATTCGGGTCTAACGTCTAGACCGGGTTAGGGACGTTATAA
Found at i:14466453 original size:26 final size:26
Alignment explanation
Indices: 14466417--14466526 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
14466407 CATGAAATTC
14466417 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
14466443 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
14466469 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
14466495 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
14466521 TTATCA
1 TTATCA
14466527 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:14480322 original size:21 final size:21
Alignment explanation
Indices: 14480298--14480337 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
14480288 ATTACCGATC
14480298 AACCACAACATAAATCATATG
1 AACCACAACATAAATCATATG
14480319 AACCACAACATAAATCATA
1 AACCACAACATAAATCATA
14480338 CATTTGCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.25, G:0.03, T:0.17
Consensus pattern (21 bp):
AACCACAACATAAATCATATG
Found at i:14484988 original size:44 final size:43
Alignment explanation
Indices: 14484925--14485082 Score: 162
Period size: 44 Copynumber: 3.7 Consensus size: 43
14484915 ATGTGATATT
14484925 GTGTAAGACCACGTCTGGGACATTGGCATCGACT-TTTGTTTTGC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGTTTT-C
*
14484969 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTTT-
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATTTG-TTTTC
* * * * * *
14485011 GTGTAAGACC-CTGTTTGGGACAGTAGCATCGATGTTTGATTAC
1 GTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGTTTTC
* * *
14485054 ATGTAAGACTACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACATTGGCAT
14485083 TGTATATGCT
Statistics
Matches: 94, Mismatches: 14, Indels: 13
0.78 0.12 0.11
Matches are distributed among these distances:
42 29 0.31
43 30 0.32
44 35 0.37
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGTTTTC
Found at i:14485030 original size:42 final size:42
Alignment explanation
Indices: 14484918--14485087 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 42
14484908 TTCTGATATG
*
14484918 TGATATTGTGTAAGACCAC-GTCTGGGACATTGGCATCG-ACTTT
1 TGATTTTGTGTAAGACC-CTGTCTGGGACATTGGCATCGTA--TT
*
14484961 TG-TTTTGCGTGTAAGACCATGTCTGGGACATTGGCATCGTATT
1 TGATTTT--GTGTAAGACCCTGTCTGGGACATTGGCATCGTATT
* * * *
14485004 TGATTTTGTGTAAGACCCTGTTTGGGACAGTAGCATCGATGTT
1 TGATTTTGTGTAAGACCCTGTCTGGGACATTGGCATCG-TATT
*** * * *
14485047 TGATTACATGTAAGACTAC-GTCTGGGACGTTGGCATTGTAT
1 TGATTTTGTGTAAGAC-CCTGTCTGGGACATTGGCATCGTAT
14485088 ATGCTTTCTG
Statistics
Matches: 103, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
42 32 0.31
43 36 0.35
44 34 0.33
45 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (42 bp):
TGATTTTGTGTAAGACCCTGTCTGGGACATTGGCATCGTATT
Found at i:14485062 original size:43 final size:42
Alignment explanation
Indices: 14484926--14485074 Score: 111
Period size: 42 Copynumber: 3.5 Consensus size: 42
14484916 TGTGATATTG
* * * * * *
14484926 TGTAAGACCACGTCTGGGACATTGGCATCG-ACTTTTGTTTTGCG
1 TGTAAGACCATGTCTGGGACAGTAGCATCGTA--TTTG-ATTACA
* * ***
14484970 TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTTG
1 TGTAAGACCATGTCTGGGACAGTAGCATCGTATTTGATTACA
* * *
14485012 TGTAAGACCCTGTTTGGGACAGTAGCATCGATGTTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTAGCATCG-TATTTGATTACA
* *
14485055 TGTAAGACTACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
14485075 GTTGGCATTG
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
42 29 0.33
43 28 0.32
44 29 0.33
45 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGTAGCATCGTATTTGATTACA
Found at i:14488323 original size:25 final size:25
Alignment explanation
Indices: 14488295--14488345 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
14488285 GAACACTTAA
14488295 TTTTTATTACTTTAGCCATTTACTT
1 TTTTTATTACTTTAGCCATTTACTT
14488320 TTTTTATTACTTTAGCCATTTACTT
1 TTTTTATTACTTTAGCCATTTACTT
14488345 T
1 T
14488346 ACTGCAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.04, T:0.61
Consensus pattern (25 bp):
TTTTTATTACTTTAGCCATTTACTT
Found at i:14501278 original size:14 final size:14
Alignment explanation
Indices: 14501232--14501279 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
14501222 CTTTTATTTT
*
14501232 TTATTTTTACTCTTA
1 TTATTATTACT-TTA
* *
14501247 TTATTATTAGTTTT
1 TTATTATTACTTTA
*
14501261 TTATTATTTCTTTA
1 TTATTATTACTTTA
14501275 TTATT
1 TTATT
14501280 GTTTTATTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 18 0.67
15 9 0.33
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.71
Consensus pattern (14 bp):
TTATTATTACTTTA
Found at i:14502344 original size:29 final size:29
Alignment explanation
Indices: 14502302--14502359 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
14502292 CTAGAAGAAG
14502302 ACTTATCTCTCTCCGGCCTTACGGTACAT
1 ACTTATCTCTCTCCGGCCTTACGGTACAT
14502331 ACTTATCTCTCTCCGGCCTTACGGTACAT
1 ACTTATCTCTCTCCGGCCTTACGGTACAT
14502360 TCACTCACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.34, G:0.14, T:0.34
Consensus pattern (29 bp):
ACTTATCTCTCTCCGGCCTTACGGTACAT
Found at i:14504328 original size:51 final size:51
Alignment explanation
Indices: 14504247--14504448 Score: 319
Period size: 51 Copynumber: 4.1 Consensus size: 51
14504237 ACTTCTGATC
* * * *
14504247 AGTGACAAGTGATGAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
14504298 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTG---
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
14504346 A---A-AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
14504393 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
14504444 AGTGA
1 AGTGA
14504449 TAAATGTGAT
Statistics
Matches: 141, Mismatches: 3, Indels: 14
0.89 0.02 0.09
Matches are distributed among these distances:
44 42 0.30
45 1 0.01
47 1 0.01
48 1 0.01
50 1 0.01
51 95 0.67
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:14504361 original size:44 final size:44
Alignment explanation
Indices: 14504293--14504451 Score: 228
Period size: 44 Copynumber: 3.5 Consensus size: 44
14504283 ATCTGATCAG
* *
14504293 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
1 TGATCAGTGAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
14504337 TGATCAGTGAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
1 TGATCAGTGAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
14504381 TGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
1 TGATCAGTG---A---A-AAGTGATAAGTGGTAGCTTTAGCTACACTTATC
*
14504432 TGATCAGTGACAAGTGATAA
1 TGATCAGTGAAAAGTGATAA
14504452 ATGTGATCAG
Statistics
Matches: 105, Mismatches: 3, Indels: 14
0.86 0.02 0.11
Matches are distributed among these distances:
44 60 0.57
47 1 0.01
48 1 0.01
50 1 0.01
51 42 0.40
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (44 bp):
TGATCAGTGAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
Found at i:14504403 original size:95 final size:95
Alignment explanation
Indices: 14504240--14504451 Score: 379
Period size: 95 Copynumber: 2.2 Consensus size: 95
14504230 TTTGAGTACT
* *
14504240 TCTGATCAGTGACAAGTGATGAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACAAGTGACA
14504305 AGTGATAAGTGGTAGCTTTAGCTACACTTA
66 AGTGATAAGTGGTAGCTTTAGCTACACTTA
* * *
14504335 TCTGATCAGTGAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGACA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACAAGTGACA
14504400 AGTGATAAGTGGTAGCTTTAGCTACACTTA
66 AGTGATAAGTGGTAGCTTTAGCTACACTTA
14504430 TCTGATCAGTGACAAGTGATAA
1 TCTGATCAGTGACAAGTGATAA
14504452 ATGTGATCAG
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 111 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (95 bp):
TCTGATCAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACAAGTGACA
AGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:14507609 original size:40 final size:41
Alignment explanation
Indices: 14507493--14507609 Score: 175
Period size: 40 Copynumber: 2.9 Consensus size: 41
14507483 CTTTCTCGAG
14507493 AATTAAAAGTGAATAGGATTTATTCCTGATTCACTA-AAAGA
1 AATT-AAAGTGAATAGGATTTATTCCTGATTCACTATAAAGA
*
14507534 AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAAATA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAAAGA
* * *
14507575 TA-TAAAGTGGATAGGATTTGTTCCTGATTCACTAT
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAT
14507610 GGTAACTTAA
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
40 62 0.87
41 9 0.13
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (41 bp):
AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAAAGA
Found at i:14507629 original size:40 final size:38
Alignment explanation
Indices: 14507493--14507633 Score: 165
Period size: 40 Copynumber: 3.5 Consensus size: 38
14507483 CTTTCTCGAG
*
14507493 AATTAAAAGTGAATAGGATTTATTCCTGATTCACTAAAAGA
1 AATT-AAAGTGAATAGGATTTATTCCTGATTCACT--ATGA
*
14507534 AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTATGA
* *
14507572 ATATATAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTA
1 A-AT-TAAAGTGAATAGGATTTATTCCTGATTCACTAT-G-A
* *
14507614 ACTTAAGGTGAATAGGATTT
1 AATTAAAGTGAATAGGATTT
14507634 TCCCTAAAAT
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
38 3 0.03
39 2 0.02
40 76 0.86
41 5 0.06
42 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (38 bp):
AATTAAAGTGAATAGGATTTATTCCTGATTCACTATGA
Found at i:14508245 original size:2 final size:2
Alignment explanation
Indices: 14508238--14508262 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14508228 GCTAGCAATG
14508238 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14508263 AACATATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14512507 original size:10 final size:11
Alignment explanation
Indices: 14512492--14512525 Score: 54
Period size: 10 Copynumber: 3.3 Consensus size: 11
14512482 GCAAAGAACT
14512492 ATTCAAT-TCA
1 ATTCAATATCA
14512502 ATTCAATATCA
1 ATTCAATATCA
14512513 A-TCAATATCA
1 ATTCAATATCA
14512523 ATT
1 ATT
14512526 AATTGTCCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (11 bp):
ATTCAATATCA
Found at i:14512810 original size:44 final size:44
Alignment explanation
Indices: 14512710--14512810 Score: 109
Period size: 44 Copynumber: 2.3 Consensus size: 44
14512700 CAGATTAAAC
*
14512710 CGAAGT-AATAGTAACAATACGACACACATGGTGATTCATCGACT
1 CGAAGTCAA-AGTAACAATACGACACACATAGTGATTCATCGACT
* ** *
14512754 CGAAGTCGAAGTAACAATACGACACTTATAGTGCCTT-ATCGACT
1 CGAAGTCAAAGTAACAATACGACACACATAGTG-ATTCATCGACT
14512798 C-AAGGTCAAAGTA
1 CGAA-GTCAAAGTA
14512811 TCCCTGAACA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
43 2 0.04
44 43 0.90
45 3 0.06
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (44 bp):
CGAAGTCAAAGTAACAATACGACACACATAGTGATTCATCGACT
Found at i:14513725 original size:7 final size:7
Alignment explanation
Indices: 14513710--14513750 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
14513700 CTTTTATATT
14513710 TTAATTAA
1 TTAA-TAA
14513718 TTAATAA
1 TTAATAA
14513725 TTAATAA
1 TTAATAA
14513732 TTAAT-A
1 TTAATAA
14513738 -TAATAA
1 TTAATAA
14513744 TATAATA
1 T-TAATA
14513751 TATATAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 4 0.13
6 2 0.07
7 15 0.50
8 9 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
TTAATAA
Found at i:14519186 original size:15 final size:15
Alignment explanation
Indices: 14519166--14519196 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14519156 TAGTGTTTCA
14519166 TATTTTTGCTTCATG
1 TATTTTTGCTTCATG
14519181 TATTTTTGCTTCATG
1 TATTTTTGCTTCATG
14519196 T
1 T
14519197 GAATTCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.61
Consensus pattern (15 bp):
TATTTTTGCTTCATG
Found at i:14520535 original size:30 final size:30
Alignment explanation
Indices: 14520460--14520535 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
14520450 ATGTTGATGA
*
14520460 TATTTTATAATTATTTAATTAAAAAATTAT
1 TATTTTATTATTATTTAATTAAAAAATTAT
* * *
14520490 TATTTTATTAATATTTAA-TAAGATATTTAT
1 TATTTTATTATTATTTAATTAA-AAAATTAT
14520520 TATTATT-TTATTATTT
1 TATT-TTATTATTATTT
14520536 TATTTAGTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 3 0.08
30 34 0.87
31 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (30 bp):
TATTTTATTATTATTTAATTAAAAAATTAT
Found at i:14522670 original size:2 final size:2
Alignment explanation
Indices: 14522663--14522695 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
14522653 AAATTATTAA
*
14522663 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14522696 AAGAAGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14528237 original size:21 final size:21
Alignment explanation
Indices: 14528211--14528306 Score: 94
Period size: 21 Copynumber: 4.8 Consensus size: 21
14528201 GGGCGTTACA
14528211 CTTACAAGCTTCTGTTCAGCT
1 CTTACAAGCTTCTGTTCAGCT
* *
14528232 CTTACAAGATTCTGTCCAGCT
1 CTTACAAGCTTCTGTTCAGCT
* * *
14528253 CTTACGAGCTTCTATTCAACT
1 CTTACAAGCTTCTGTTCAGCT
14528274 -TT-CGAAG-TTCTGTTCAGCT
1 CTTAC-AAGCTTCTGTTCAGCT
*
14528293 -TT-CGAGCTTCTGTT
1 CTTACAAGCTTCTGTT
14528307 GGCGTATTCG
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
18 2 0.03
19 21 0.34
20 4 0.06
21 35 0.56
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.40
Consensus pattern (21 bp):
CTTACAAGCTTCTGTTCAGCT
Found at i:14528289 original size:19 final size:19
Alignment explanation
Indices: 14528257--14528306 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
14528247 CCAGCTCTTA
*
14528257 CGAGCTTCTATTCAACTTT
1 CGAGCTTCTGTTCAACTTT
*
14528276 CGAAG-TTCTGTTCAGCTTT
1 CG-AGCTTCTGTTCAACTTT
14528295 CGAGCTTCTGTT
1 CGAGCTTCTGTT
14528307 GGCGTATTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 2 0.07
19 23 0.85
20 2 0.07
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (19 bp):
CGAGCTTCTGTTCAACTTT
Found at i:14533943 original size:117 final size:117
Alignment explanation
Indices: 14533737--14533948 Score: 307
Period size: 117 Copynumber: 1.8 Consensus size: 117
14533727 ATAAGATCTA
*
14533737 GATTAAATTTTGTGATAATTGCTATTTATGTTAATTATTTAAATATTATTAAAATTCCTAAAAAA
1 GATTAAATTTTGTGATAATTGCTATTTATGTTAATTATTTAAATATTATTAAAACTCCTAAAAAA
* *
14533802 TTTTAAAATGCAGTAATTTATTTAAAGAAAAAAAATTGAGATGAAAGGTTTG
66 CTTTAAAATGCAGTAAATTATTTAAAGAAAAAAAATTGAGATGAAAGGTTTG
* * ** * * * *
14533854 GATTAAATTTTGTGATAATTGTTATTTATGTTGATTATTTAAATATTATTGGAACTCTTGAAGAG
1 GATTAAATTTTGTGATAATTGCTATTTATGTTAATTATTTAAATATTATTAAAACTCCTAAAAAA
* *
14533919 CTTTAAATTGCAGTAAATTGTTTAAAGAAA
66 CTTTAAAATGCAGTAAATTATTTAAAGAAA
14533949 GAATTTAAGA
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
117 82 1.00
ACGTcount: A:0.40, C:0.04, G:0.14, T:0.42
Consensus pattern (117 bp):
GATTAAATTTTGTGATAATTGCTATTTATGTTAATTATTTAAATATTATTAAAACTCCTAAAAAA
CTTTAAAATGCAGTAAATTATTTAAAGAAAAAAAATTGAGATGAAAGGTTTG
Found at i:14536409 original size:25 final size:25
Alignment explanation
Indices: 14536380--14536431 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
14536370 AAGATTAATT
**
14536380 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
14536405 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
14536430 TG
1 TG
14536432 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Done.