Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 51 of 345
Found at i:14539086 original size:3 final size:3
Alignment explanation
Indices: 14539067--14539170 Score: 95
Period size: 3 Copynumber: 33.7 Consensus size: 3
14539057 TTATTTTCAA
* * * * *
14539067 ATT ACTT ATT TTT ATT ATT ATT TTCT GTT GTTT ATT ATT ACT ATT AATT
1 ATT A-TT ATT ATT ATT ATT ATT AT-T ATT AT-T ATT ATT ATT ATT -ATT
*
14539116 ATA ATT -TCT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14539160 ATT ATT ATT AT
1 ATT ATT ATT AT
14539171 ATAGTAGTGT
Statistics
Matches: 85, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
2 3 0.04
3 72 0.85
4 10 0.12
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:14539296 original size:9 final size:9
Alignment explanation
Indices: 14539280--14539313 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
14539270 TTTGTATTTC
14539280 AATATTATT
1 AATATTATT
*
14539289 ACTATTATT
1 AATATTATT
*
14539298 ATTATTATT
1 AATATTATT
14539307 AATATTA
1 AATATTA
14539314 GTGCATATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (9 bp):
AATATTATT
Found at i:14539387 original size:147 final size:147
Alignment explanation
Indices: 14539135--14539443 Score: 415
Period size: 147 Copynumber: 2.1 Consensus size: 147
14539125 ATATTATTAT
* * * * *
14539135 TATTATTATTATTATTATTATTATTATTATTATTATATAGTAGTGTATGTTTATTTATATATATA
1 TATTATTACTATTATTATTATTATTAATATTAGTACATAGTAGTGTATGTTTATGTATATATATA
* * *
14539200 TATATATATGTATATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATGTTATATT
66 TATACATATGTATATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATATTATATA
14539265 TACTTTTTGTATTTCAA
131 TACTTTTTGTATTTCAA
* * * * *
14539282 TATTATTACTATTATTATTATTATTAATATTAGTGCATATTATTTTAT-TATATATGTATGTATA
1 TATTATTACTATTATTATTATTATTAATATTAGTACATAGTAGTGTATGT-T-TATGTATATATA
* * * * *
14539346 TGTATACATATTTATATATAGTATTATTTTT-ATTACTTTATTTTGATATTTTTATTATATTATA
64 TATATACATATGTATATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATATTATA
*
14539410 TATGCTTTTTGTATTTCAA
129 TATACTTTTTGTATTTCAA
14539429 TATTATTACTATTAT
1 TATTATTACTATTAT
14539444 CACCATATTA
Statistics
Matches: 141, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
146 1 0.01
147 102 0.72
148 38 0.27
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.59
Consensus pattern (147 bp):
TATTATTACTATTATTATTATTATTAATATTAGTACATAGTAGTGTATGTTTATGTATATATATA
TATACATATGTATATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATATTATATA
TACTTTTTGTATTTCAA
Found at i:14539487 original size:3 final size:3
Alignment explanation
Indices: 14539479--14539528 Score: 59
Period size: 3 Copynumber: 17.0 Consensus size: 3
14539469 CTATCCAATG
* *
14539479 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-G TAT TA- TAGC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
14539523 TAT TAT
1 TAT TAT
14539529 ATTTTCCTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
2 3 0.07
3 36 0.88
4 2 0.05
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:14539713 original size:12 final size:12
Alignment explanation
Indices: 14539698--14539925 Score: 113
Period size: 12 Copynumber: 19.4 Consensus size: 12
14539688 TTATTTGTCT
*
14539698 TATTGTTATTAC
1 TATTATTATTAC
14539710 TATT-TGTATTTAC
1 TATTAT-TA-TTAC
**
14539723 CGTTATTATTAC
1 TATTATTATTAC
*
14539735 TATTATTTTTAC
1 TATTATTATTAC
14539747 --TT-TTATTAC
1 TATTATTATTAC
*
14539756 TATTACTATT--
1 TATTATTATTAC
14539766 TATTATTATTAC
1 TATTATTATTAC
*
14539778 TATTATTATCAC
1 TATTATTATTAC
*
14539790 TATTATT-TT-T
1 TATTATTATTAC
*
14539800 TATTTTTTATTAC
1 TA-TTATTATTAC
*
14539813 TATTATCATTTTA-
1 TATTAT--TATTAC
* ** *
14539826 AAACATTGTTAC
1 TATTATTATTAC
*
14539838 TATTATTCTTTTAC
1 TATTA-T-TATTAC
* *
14539852 CA-T-TTAATAC
1 TATTATTATTAC
*
14539862 GTATTATTATTAT
1 -TATTATTATTAC
14539875 TATTATTATTA-
1 TATTATTATTAC
*
14539886 T-TTATTATTAT
1 TATTATTATTAC
*
14539897 TATTATTATTAT
1 TATTATTATTAC
*
14539909 TATTATTATTAT
1 TATTATTATTAC
14539921 TATTA
1 TATTA
14539926 GTGTATGTTT
Statistics
Matches: 166, Mismatches: 29, Indels: 42
0.70 0.12 0.18
Matches are distributed among these distances:
9 6 0.04
10 26 0.16
11 16 0.10
12 87 0.52
13 20 0.12
14 11 0.07
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:14539733 original size:3 final size:3
Alignment explanation
Indices: 14539725--14539925 Score: 130
Period size: 3 Copynumber: 68.0 Consensus size: 3
14539715 GTATTTACCG
* * * *
14539725 TTA TTA TTA CTA TTA TTT TTA CTT- TTA TTA CTA TTA CTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA -TTA TTA
* * * *
14539771 TTA TTA CTA TTA TTA TCA CTA TTA TT- TT- TTA TT- TT- TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * * * **
14539815 TTA TCA TT- TTA -AA ACA TTG TTA CTA TTA TTC TT- TTA CCA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* *
14539858 ATA CGTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TTA
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
14539905 TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
14539926 GTGTATGTTT
Statistics
Matches: 153, Mismatches: 34, Indels: 22
0.73 0.16 0.11
Matches are distributed among these distances:
2 15 0.10
3 128 0.84
4 10 0.07
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:14539818 original size:16 final size:16
Alignment explanation
Indices: 14539747--14539803 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
14539737 TTATTTTTAC
*
14539747 TTTTATTACTATTACT
1 TTTTATTACTATTATT
* *
14539763 ATTTATTATTATTACTAT
1 TTTTATTACTATTA-T-T
* *
14539781 TATTATCACTATTATT
1 TTTTATTACTATTATT
14539797 TTTTATT
1 TTTTATT
14539804 TTTTATTACT
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
16 18 0.60
17 1 0.03
18 11 0.37
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTTATTACTATTATT
Found at i:14539957 original size:12 final size:12
Alignment explanation
Indices: 14539940--14539973 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14539930 ATGTTTCCAT
*
14539940 TATACATGTATA
1 TATACATATATA
*
14539952 TATACATATATT
1 TATACATATATA
14539964 TATACATATA
1 TATACATATA
14539974 GTATTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (12 bp):
TATACATATATA
Found at i:14545242 original size:35 final size:35
Alignment explanation
Indices: 14545199--14545273 Score: 134
Period size: 35 Copynumber: 2.2 Consensus size: 35
14545189 TTTTCTCTAC
14545199 GAGA-TTTAGTTCAAAACCATCCAGATATTACGAA
1 GAGAGTTTAGTTCAAAACCATCCAGATATTACGAA
*
14545233 GAGAGTTTAGTTCAAAACCATCCAGATATTGCGAA
1 GAGAGTTTAGTTCAAAACCATCCAGATATTACGAA
14545268 GAGAGT
1 GAGAGT
14545274 GGATCTGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
34 4 0.10
35 35 0.90
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (35 bp):
GAGAGTTTAGTTCAAAACCATCCAGATATTACGAA
Found at i:14553065 original size:15 final size:15
Alignment explanation
Indices: 14553045--14553077 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
14553035 TCAAATGAAC
14553045 AACCATAAACTAAAT
1 AACCATAAACTAAAT
14553060 AACCATAAACTAAAT
1 AACCATAAACTAAAT
14553075 AAC
1 AAC
14553078 ATTTTCCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.61, C:0.21, G:0.00, T:0.18
Consensus pattern (15 bp):
AACCATAAACTAAAT
Found at i:14554994 original size:22 final size:23
Alignment explanation
Indices: 14554968--14555012 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
14554958 ACCTGATCAG
14554968 AATACGACACAT-AAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
14554990 AATACGACACATAAAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
14555013 TCAGTAAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (23 bp):
AATACGACACATAAAGTGCCTGA
Found at i:14558445 original size:43 final size:43
Alignment explanation
Indices: 14558384--14558471 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
14558374 ATTTTCATGT
14558384 ATCTCATTGTATGGTTTATTTGAATAATAAATAATAGAATGAC
1 ATCTCATTGTATGGTTTATTTGAATAATAAATAATAGAATGAC
*
14558427 ATCTCATTGTATGGTTTATTTGAATAATAAATAATTGAATGAC
1 ATCTCATTGTATGGTTTATTTGAATAATAAATAATAGAATGAC
14558470 AT
1 AT
14558472 ACTCTAAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.41
Consensus pattern (43 bp):
ATCTCATTGTATGGTTTATTTGAATAATAAATAATAGAATGAC
Found at i:14559180 original size:78 final size:77
Alignment explanation
Indices: 14558893--14559199 Score: 436
Period size: 77 Copynumber: 4.0 Consensus size: 77
14558883 TGATATTTTT
* * ** *
14558893 ATTTCTGTTTTTCAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGCCCACATGCT
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
* *
14558958 AAGATATTTTCA
66 GAGGTATTTTCA
*
14558970 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGTT
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
14559035 GAGGTATCTTT-A
66 GAGGTAT-TTTCA
* * * * * * *
14559047 GTTCCTATTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACAAGCC
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
14559112 GAGGTATTTTCA
66 GAGGTATTTTCA
* *
14559124 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCATACGC
1 ATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGC
14559189 TGAGGTATTTT
65 TGAGGTATTTT
14559200 TAGTTTCTAT
Statistics
Matches: 202, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
76 3 0.01
77 140 0.69
78 59 0.29
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (77 bp):
ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
GAGGTATTTTCA
Found at i:14559247 original size:64 final size:64
Alignment explanation
Indices: 14559144--14559263 Score: 195
Period size: 64 Copynumber: 1.9 Consensus size: 64
14559134 TTCAAAAAAA
* * * *
14559144 ATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCATACGCTGAGGTATTTTTAGTTTCT
1 ATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGGTCACACACTGAGGTATTTTTAGTTTCT
*
14559208 ATCAACTTATATTACGAGAGGTGAGTTGAGCTTCAGGTCACACACTGAGGTATTTT
1 ATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGGTCACACACTGAGGTATTTT
14559264 CAATTTTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (64 bp):
ATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGGTCACACACTGAGGTATTTTTAGTTTCT
Found at i:14561199 original size:3 final size:3
Alignment explanation
Indices: 14561180--14561645 Score: 155
Period size: 3 Copynumber: 154.7 Consensus size: 3
14561170 TTATTTTCAA
* *
14561180 ATT ACTT ATT TTT ATT ATT ATT -TT ATGT -TGT -TT ATT ATT ACT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT AT-T AT-T ATT ATT ATT ATT ATT
*
14561225 AATT ATA ATT -TCT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 -ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
14561271 ATT ATT ATT ATT ATAT AGT AGTGT ATGT -TT ATTT ATAT ATAT ATGT A-T
1 ATT ATT ATT ATT AT-T ATT A-T-T AT-T ATT A-TT AT-T AT-T AT-T ATT
* * * **
14561319 ATAT AGT ATT ATT TTT AATT ACT -TT ATT -TT AAC ATT ATT ATT A-T
1 AT-T ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
14561363 GTT A-T ATT -TG CTT -TT -TGT ATT -TC AAT ATT ATT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
14561404 ATT ATT ATT AAT ATT AGT ACAT ATT ATT TTT ATT ATAT ATGT ATGT A-T
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT AT-T AT-T AT-T ATT
* * *
14561452 ATGT A-T ACAT ATT -TAT ATAT AGT ATT ATT -TT -TT ATT ACT -TT ATT
1 AT-T ATT A-TT ATT AT-T AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
14561496 -TT GA-T ATT TTT ATT A-T ATT ATAT ATG CTT -TT -TGT ATT -TT AAT
1 ATT -ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT AT-T ATT ATT ATT
* * * * *
14561538 ATT ATT ACT ATT ATC ATC A-T ATT ATT ATT ACCTT -TT -TT ACT ATCCA
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A--TT ATT ATT ATT AT--T
14561584 ATGT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT ATT
1 AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14561629 ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT AT
14561646 ATTTTCCTTT
Statistics
Matches: 356, Mismatches: 58, Indels: 98
0.70 0.11 0.19
Matches are distributed among these distances:
2 45 0.13
3 250 0.70
4 55 0.15
5 6 0.02
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:14561524 original size:149 final size:151
Alignment explanation
Indices: 14561237--14561551 Score: 449
Period size: 149 Copynumber: 2.1 Consensus size: 151
14561227 TTATAATTTC
* * * * *
14561237 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATATAGTAGTGTATGTTTA
1 TATTATTACTATTATTATTATTATTAATATTAGTAATATTATTATTATATAGTAGTGTATGTATA
* * *
14561302 TTTATATATATATGTATATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATGTTA
66 TGTATACATATATGTATATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATATTA
*
14561367 TATTTGCTTTTTGTATTTCAA
131 TATATGCTTTTTGTATTTCAA
*
14561388 TATTATTACTATTATTATTATTATTAATATTAGTACATATTATTTTTATTATA-TA-TGTATGTA
1 TATTATTACTATTATTATTATTATTAATATTAGTA-ATATTATTATTA-TATAGTAGTGTATGTA
* * * *
14561451 TATGTATACATAT-T-TATATATAGTATTATTTTTTATTACTTTATTTTGATATTTTTATTATAT
64 TATGTATACATATATGTATATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATAT
*
14561514 TATATATGCTTTTTGTATTTTAA
129 TATATATGCTTTTTGTATTTCAA
14561537 TATTATTACTATTAT
1 TATTATTACTATTAT
14561552 CATCATATTA
Statistics
Matches: 147, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
149 80 0.54
150 1 0.01
151 50 0.34
152 12 0.08
153 4 0.03
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.60
Consensus pattern (151 bp):
TATTATTACTATTATTATTATTATTAATATTAGTAATATTATTATTATATAGTAGTGTATGTATA
TGTATACATATATGTATATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATATTA
TATATGCTTTTTGTATTTCAA
Found at i:14561851 original size:3 final size:3
Alignment explanation
Indices: 14561843--14562048 Score: 140
Period size: 3 Copynumber: 70.0 Consensus size: 3
14561833 GTATTTACCG
* * * *
14561843 TTA TTA TTA CTA TTA TTT TTA CTT- TTA TTA CTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
14561888 TTA TTA CTA TTA TTA TCA CTC TTA TT- TT- TTA TT- TT- TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * * * **
14561932 TTA TCA TT- TTA -AA ACA TTG TTA CTA TTA TTC TT- TTA CCA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* *
14561975 ATA CGTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA -TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
14562022 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
14562049 GTGTATGTTT
Statistics
Matches: 157, Mismatches: 36, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
2 15 0.10
3 134 0.85
4 8 0.05
ACGTcount: A:0.30, C:0.08, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:14562080 original size:12 final size:12
Alignment explanation
Indices: 14562063--14562096 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14562053 ATGTTTCCAT
*
14562063 TATACATGTATA
1 TATACATATATA
*
14562075 TATACATATATT
1 TATACATATATA
14562087 TATACATATA
1 TATACATATA
14562097 GTATTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (12 bp):
TATACATATATA
Found at i:14564123 original size:2 final size:2
Alignment explanation
Indices: 14564116--14564140 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14564106 GGTACTTTAC
14564116 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14564141 AAAGCCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14568307 original size:2 final size:2
Alignment explanation
Indices: 14568302--14568343 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
14568292 CTCTCCGCAA
14568302 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14568344 CGTGTGAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14573854 original size:20 final size:20
Alignment explanation
Indices: 14573816--14573863 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
14573806 TAAATTCTAA
* **
14573816 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
14573836 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
14573856 AAA-ATAAA
1 AAAGATAAA
14573864 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:14573907 original size:15 final size:15
Alignment explanation
Indices: 14573887--14573916 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14573877 ATAATCCTAA
*
14573887 TAATTATCTTAATAT
1 TAATTATCCTAATAT
14573902 TAATTATCCTAATAT
1 TAATTATCCTAATAT
14573917 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:14574504 original size:9 final size:9
Alignment explanation
Indices: 14574487--14574531 Score: 60
Period size: 9 Copynumber: 5.3 Consensus size: 9
14574477 TTTACATATA
*
14574487 TTTTCTCTT
1 TTTTTTCTT
14574496 TTTTTTCTT
1 TTTTTTCTT
14574505 TTTTTTC--
1 TTTTTTCTT
14574512 -TTTTTCTT
1 TTTTTTCTT
14574520 TTTTTTCTT
1 TTTTTTCTT
14574529 TTT
1 TTT
14574532 ATTTTATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
6 6 0.19
9 26 0.81
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:14574517 original size:15 final size:15
Alignment explanation
Indices: 14574497--14574541 Score: 72
Period size: 15 Copynumber: 2.9 Consensus size: 15
14574487 TTTTCTCTTT
14574497 TTTTTCTTTTTTTTC
1 TTTTTCTTTTTTTTC
14574512 TTTTTCTTTTTTTTC
1 TTTTTCTTTTTTTTC
*
14574527 TTTTTATTTTATTTT
1 TTTTTCTTTT-TTTT
14574542 ATTTATGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
15 24 0.86
16 4 0.14
ACGTcount: A:0.04, C:0.09, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTCTTTTTTTTC
Found at i:14575507 original size:5 final size:5
Alignment explanation
Indices: 14575490--14575537 Score: 59
Period size: 5 Copynumber: 10.4 Consensus size: 5
14575480 AATAATAAAT
*
14575490 AATAA AAT-- AATAA GATAA AAT-A AATAA AATAA AA-AA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
14575536 AA
1 AA
14575538 ATTGGGTTGC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 3 0.08
4 8 0.22
5 26 0.70
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:14575509 original size:28 final size:28
Alignment explanation
Indices: 14575478--14575537 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
14575468 TTAATATCTG
*
14575478 AAAAT-AAT-AAATAATAAAATAATAAGAT
1 AAAATAAATAAAATAA-AAAA-AATAAAAT
14575506 AAAATAAATAAAATAAAAAAAATAAAAT
1 AAAATAAATAAAATAAAAAAAATAAAAT
14575534 AAAA
1 AAAA
14575538 ATTGGGTTGC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 16 0.55
29 7 0.24
30 6 0.21
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (28 bp):
AAAATAAATAAAATAAAAAAAATAAAAT
Found at i:14575518 original size:9 final size:9
Alignment explanation
Indices: 14575498--14575537 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
14575488 ATAATAAAAT
14575498 AATAAGATAA
1 AATAA-ATAA
14575508 AATAAATAA
1 AATAAATAA
*
14575517 AATAAAAAA
1 AATAAATAA
14575526 AATAAAATAA
1 AAT-AAATAA
14575536 AA
1 AA
14575538 ATTGGGTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
9 15 0.56
10 12 0.44
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (9 bp):
AATAAATAA
Found at i:14575521 original size:14 final size:14
Alignment explanation
Indices: 14575490--14575537 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
14575480 AATAATAAAT
14575490 AATAAAAT-AATAA
1 AATAAAATAAATAA
*
14575503 GATAAAATAAATAA
1 AATAAAATAAATAA
*
14575517 AATAAAAAAAATAA
1 AATAAAATAAATAA
14575531 AATAAAA
1 AATAAAA
14575538 ATTGGGTTGC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
13 7 0.23
14 24 0.77
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (14 bp):
AATAAAATAAATAA
Found at i:14575779 original size:33 final size:33
Alignment explanation
Indices: 14575737--14575803 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
14575727 ATTCAGTCAC
14575737 AATAAAAGGTCCTTGCCACCAAGATCGAAGCTT
1 AATAAAAGGTCCTTGCCACCAAGATCGAAGCTT
*
14575770 AATAAAAGGTCCTTGCCACCGAGATCGAAGCTT
1 AATAAAAGGTCCTTGCCACCAAGATCGAAGCTT
14575803 A
1 A
14575804 CCTGGGAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (33 bp):
AATAAAAGGTCCTTGCCACCAAGATCGAAGCTT
Found at i:14578141 original size:62 final size:62
Alignment explanation
Indices: 14578044--14578171 Score: 256
Period size: 62 Copynumber: 2.1 Consensus size: 62
14578034 TTTTCTAGTA
14578044 TAAGCGTTCAACTTCCTGTAATCGATGCAGACACGCCACCTGTTCTGCACTCGGACCGGTAC
1 TAAGCGTTCAACTTCCTGTAATCGATGCAGACACGCCACCTGTTCTGCACTCGGACCGGTAC
14578106 TAAGCGTTCAACTTCCTGTAATCGATGCAGACACGCCACCTGTTCTGCACTCGGACCGGTAC
1 TAAGCGTTCAACTTCCTGTAATCGATGCAGACACGCCACCTGTTCTGCACTCGGACCGGTAC
14578168 TAAG
1 TAAG
14578172 TCACCCTCAG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 66 1.00
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.24
Consensus pattern (62 bp):
TAAGCGTTCAACTTCCTGTAATCGATGCAGACACGCCACCTGTTCTGCACTCGGACCGGTAC
Found at i:14581990 original size:20 final size:20
Alignment explanation
Indices: 14581952--14581999 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
14581942 TAAATTCTAA
* **
14581952 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
14581972 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
14581992 AAA-ATAAA
1 AAAGATAAA
14582000 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:14584135 original size:16 final size:15
Alignment explanation
Indices: 14584114--14584171 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 15
14584104 CGACCAAAAC
*
14584114 TGTTAATTAAGGTTAA
1 TGTTAATTAA-ATTAA
14584130 TGTTAA-TAAATTAA
1 TGTTAATTAAATTAA
*
14584144 TGATTAATTAAACTAA
1 TG-TTAATTAAATTAA
14584160 T-TATAATTAAAT
1 TGT-TAATTAAAT
14584172 AATAAGTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
14 7 0.19
15 15 0.42
16 14 0.39
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.43
Consensus pattern (15 bp):
TGTTAATTAAATTAA
Found at i:14585154 original size:48 final size:48
Alignment explanation
Indices: 14585096--14585253 Score: 199
Period size: 48 Copynumber: 3.3 Consensus size: 48
14585086 GATATTTATA
* *
14585096 GTGTAGGTTTAACCTTAACGGGTAACCAGGCACTAATATTAATTATTC
1 GTGTAGGTTTAACCTTAACGGGTAACCAAGCACTATTATTAATTATTC
* ** * * *
14585144 GTGTAGGTTTAACCCTAATAGGTAACTAAACACTATTATTCATTATTC
1 GTGTAGGTTTAACCTTAACGGGTAACCAAGCACTATTATTAATTATTC
* * *
14585192 GTATAGGTTTAACCTTAACGGGTAACCAAGCACTATTATTTATTGTTC
1 GTGTAGGTTTAACCTTAACGGGTAACCAAGCACTATTATTAATTATTC
* *
14585240 ATGTAGATTTAACC
1 GTGTAGGTTTAACC
14585254 CAAACGAGTA
Statistics
Matches: 91, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (48 bp):
GTGTAGGTTTAACCTTAACGGGTAACCAAGCACTATTATTAATTATTC
Found at i:14587863 original size:30 final size:30
Alignment explanation
Indices: 14587827--14587886 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14587817 TATTTTATTA
**
14587827 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTCATTATTATTTTAAAGGCATTTG
* *
14587857 TTAATTTCATTATTATTTTAGAGGTATTTG
1 TTAATTTCATTATTATTTTAAAGGCATTTG
14587887 CTTGTTAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTAATTTCATTATTATTTTAAAGGCATTTG
Found at i:14605195 original size:27 final size:27
Alignment explanation
Indices: 14605134--14605205 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
14605124 AATGCCTTAT
14605134 TGGTGTGTTTGGGAGGATATGATATAC
1 TGGTGTGTTTGGGAGGATATGATATAC
* * * *
14605161 CGGAGTGTTTGGGAGGCTAT-ATTGTAC
1 TGGTGTGTTTGGGAGGATATGA-TATAC
14605188 TGGTGTGTTAT-GGAGGAT
1 TGGTGTGTT-TGGGAGGAT
14605206 TTATATTATT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 1 0.03
27 34 0.94
28 1 0.03
ACGTcount: A:0.19, C:0.06, G:0.39, T:0.36
Consensus pattern (27 bp):
TGGTGTGTTTGGGAGGATATGATATAC
Found at i:14605710 original size:2 final size:2
Alignment explanation
Indices: 14605697--14605734 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
14605687 GTACATGAAT
*
14605697 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14605735 GGTTAAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14607767 original size:2 final size:2
Alignment explanation
Indices: 14607760--14607790 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14607750 TTTGGGATAA
14607760 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14607791 CTATTATCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14609446 original size:21 final size:21
Alignment explanation
Indices: 14609421--14609489 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
14609411 TATAATGATT
14609421 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
14609442 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
14609462 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
14609482 ATTATTAT
1 ATTATTAT
14609490 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:14609502 original size:15 final size:14
Alignment explanation
Indices: 14609476--14609506 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
14609466 TATGGTTTTA
14609476 TATTAGATTATTAT
1 TATTAGATTATTAT
14609490 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
14609505 TA
1 TA
14609507 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:14609840 original size:14 final size:14
Alignment explanation
Indices: 14609816--14609848 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14609806 AAGAATTAAG
14609816 GAAACAAAGAAACA
1 GAAACAAAGAAACA
14609830 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
14609844 GAAAC
1 GAAAC
14609849 GAAGCAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:14622801 original size:26 final size:26
Alignment explanation
Indices: 14622750--14622856 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14622740 TGAAATGCCC
14622750 ATCATGGAACATTTA-CTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
14622775 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
14622801 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
14622827 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14622853 ATCA
1 ATCA
14622857 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
25 14 0.19
26 61 0.81
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:14624282 original size:16 final size:16
Alignment explanation
Indices: 14624261--14624292 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14624251 TATGAGATAG
14624261 CATGTAAGACTACGTC
1 CATGTAAGACTACGTC
14624277 CATGTAAGACTACGTC
1 CATGTAAGACTACGTC
14624293 TGGGACGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (16 bp):
CATGTAAGACTACGTC
Found at i:14624673 original size:2 final size:2
Alignment explanation
Indices: 14624668--14624702 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14624658 TATATATATA
14624668 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
14624703 TAATTATGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:14627012 original size:28 final size:28
Alignment explanation
Indices: 14626973--14627029 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 28
14626963 AGTTTTTAAC
*
14626973 ATATTTTTTTAATA-TTTTTAATAATTT
1 ATATTTTTTTAATATTTTTTAAAAATTT
14627000 ATATTTATTTTAATATTTTTTAAAAATTT
1 ATATTT-TTTTAATATTTTTTAAAAATTT
14627029 A
1 A
14627030 AAATTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 6 0.22
28 8 0.30
29 13 0.48
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (28 bp):
ATATTTTTTTAATATTTTTTAAAAATTT
Found at i:14627036 original size:29 final size:28
Alignment explanation
Indices: 14626979--14627037 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 28
14626969 TAACATATTT
* * *
14626979 TTTTAATATTTTTAATAATTTATATTTA
1 TTTTAATATTTTTAAAAATTTAAAATTA
14627007 TTTTAATATTTTTTAAAAATTTAAAATTA
1 TTTTAATA-TTTTTAAAAATTTAAAATTA
14627036 TT
1 TT
14627038 AAGAAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 8 0.30
29 19 0.70
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTTAATATTTTTAAAAATTTAAAATTA
Found at i:14630578 original size:49 final size:49
Alignment explanation
Indices: 14630516--14630613 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
14630506 AGATAAATTG
*
14630516 ACTAGTTTGAGAGTTTGATTAAGCTTGTGAATAGCTTCTTTTCAACAAT
1 ACTAATTTGAGAGTTTGATTAAGCTTGTGAATAGCTTCTTTTCAACAAT
14630565 ACTAATTTGAGAGTTTGATTAAGCTTGTGAATAGCTTCTTTTCAACAAT
1 ACTAATTTGAGAGTTTGATTAAGCTTGTGAATAGCTTCTTTTCAACAAT
14630614 GTATTGTAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (49 bp):
ACTAATTTGAGAGTTTGATTAAGCTTGTGAATAGCTTCTTTTCAACAAT
Found at i:14632440 original size:21 final size:19
Alignment explanation
Indices: 14632416--14632454 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
14632406 CAGAAATCTT
14632416 AATTAAAATAATATAAAAAAC
1 AATT-AAATAAT-TAAAAAAC
*
14632437 AATTATATAATTAAAAAA
1 AATTAAATAATTAAAAAA
14632455 GAGTTAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 6 0.35
21 4 0.24
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (19 bp):
AATTAAATAATTAAAAAAC
Found at i:14635177 original size:14 final size:14
Alignment explanation
Indices: 14635158--14635185 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14635148 TTCAAAGACG
14635158 ATTAATTAGTTATA
1 ATTAATTAGTTATA
14635172 ATTAATTAGTTATA
1 ATTAATTAGTTATA
14635186 CGGTGAGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
ATTAATTAGTTATA
Found at i:14637307 original size:43 final size:43
Alignment explanation
Indices: 14637241--14637334 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
14637231 ACCAAAATGG
* * *
14637241 GTTTTAAACATCAACAGCTCGG-CTATTGGGCTTCTTTTTCTTA
1 GTTTTAAACAGCAACAGCTCGGCCTATTGGGCCTC-TTTTCTAA
*
14637284 GTTTTAAACAGCAATA-CTGCGGCTCTATTGGGCCTCTTTTCTAA
1 GTTTTAAACAGCAACAGCT-CGGC-CTATTGGGCCTCTTTTCTAA
14637328 GTTTTAA
1 GTTTTAA
14637335 TTTCAAGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
42 2 0.05
43 17 0.39
44 14 0.32
45 11 0.25
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.40
Consensus pattern (43 bp):
GTTTTAAACAGCAACAGCTCGGCCTATTGGGCCTCTTTTCTAA
Found at i:14642879 original size:25 final size:21
Alignment explanation
Indices: 14642836--14642877 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14642826 TTCTTCAAAT
14642836 ATTGCTTCTGAGACAAACTAA
1 ATTGCTTCTGAGACAAACTAA
14642857 ATTGCTTCTGAGACAAACTAA
1 ATTGCTTCTGAGACAAACTAA
14642878 CTCTGCCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (21 bp):
ATTGCTTCTGAGACAAACTAA
Found at i:14645842 original size:31 final size:31
Alignment explanation
Indices: 14645795--14645853 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
14645785 TGATATTTTA
*
14645795 TAATATTTAATTAGATA-ATTATTATTTATT
1 TAATATTTAATAAGATATATTATTATTTATT
*
14645825 TAATATTTTAATAAGATATTTTATTATTT
1 TAATA-TTTAATAAGATATATTATTATTT
14645854 TATTATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 11 0.44
32 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (31 bp):
TAATATTTAATAAGATATATTATTATTTATT
Found at i:14645852 original size:8 final size:8
Alignment explanation
Indices: 14645841--14645865 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14645831 TTTAATAAGA
14645841 TATTTTAT
1 TATTTTAT
14645849 TATTTTAT
1 TATTTTAT
14645857 TATTTTAT
1 TATTTTAT
14645865 T
1 T
14645866 TAGTCGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:14655398 original size:14 final size:15
Alignment explanation
Indices: 14655379--14655407 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14655369 ACCCACTTCT
14655379 AAAATAAA-AAAAAA
1 AAAATAAAGAAAAAA
14655393 AAAATAAAGAAAAAA
1 AAAATAAAGAAAAAA
14655408 CTTGTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.90, C:0.00, G:0.03, T:0.07
Consensus pattern (15 bp):
AAAATAAAGAAAAAA
Found at i:14665196 original size:2 final size:2
Alignment explanation
Indices: 14665189--14665228 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
14665179 GAGGTTGCAG
14665189 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14665229 GATCTGATTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14669299 original size:24 final size:23
Alignment explanation
Indices: 14669244--14669305 Score: 71
Period size: 24 Copynumber: 2.9 Consensus size: 23
14669234 TGATGTTGAT
*
14669244 GATATTTTATGATTA-TTTAATA
1 GATATTTTATTATTATTTTAATA
14669266 GATA---TA-TATTATTTTAATGA
1 GATATTTTATTATTATTTTAAT-A
14669286 GATATTTTATTATTATTTTA
1 GATATTTTATTATTATTTTA
14669306 TTATTAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
18 4 0.12
19 8 0.24
20 5 0.15
22 4 0.12
23 2 0.06
24 10 0.30
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.56
Consensus pattern (23 bp):
GATATTTTATTATTATTTTAATA
Found at i:14671513 original size:46 final size:46
Alignment explanation
Indices: 14671446--14671810 Score: 509
Period size: 46 Copynumber: 8.0 Consensus size: 46
14671436 AGTGTGCTCT
14671446 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14671492 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14671538 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14671584 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGC-AC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
14671629 CTGATATGAAACGTGTAAGACCCTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
14671675 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
14671721 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
14671767 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
14671811 TCATGTCAAA
Statistics
Matches: 293, Mismatches: 24, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
45 44 0.15
46 249 0.85
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:14671694 original size:137 final size:137
Alignment explanation
Indices: 14671446--14671833 Score: 512
Period size: 137 Copynumber: 2.8 Consensus size: 137
14671436 AGTGTGCTCT
*
14671446 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC-ACCTGATATGAAACGTGTAAG
* * * ***
14671511 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
65 ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGACCATGGTTGAAAGATACC
14671576 ATGGCAGC
130 ATGGCAGC
*
14671584 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCACCTGATATGAAACGTGTAAGA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCACCTGATATGAAACGTGTAAGA
* *
14671649 CCCTGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGACCATGGTTGAAAGATACCA
14671714 TGGCAGC
131 TGGCAGC
* * ** * * * *
14671721 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC-ACCTGATATG-AAACGTGTAA
* * * * *
14671785 GACCATAGTTGAAAGACACTATGGCATCATGTCA--AAGATAAATAAGACC
64 GACCATGGTTGAAAGATACCATGGCAACATGACAGGAA-ATAAATAAGACC
14671834 GTGGATGGGA
Statistics
Matches: 221, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
136 2 0.01
137 136 0.62
138 83 0.38
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (137 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCACCTGATATGAAACGTGTAAGA
CCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGACCATGGTTGAAAGATACCA
TGGCAGC
Found at i:14671754 original size:183 final size:183
Alignment explanation
Indices: 14671446--14671810 Score: 516
Period size: 183 Copynumber: 2.0 Consensus size: 183
14671436 AGTGTGCTCT
* * * * ***
14671446 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAG
* **
14671511 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
* * * * * *
14671576 ATGGCAGCCTGATATG-AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAC
131 ATGGCAACATGACA-GAAAACGAGTAAGACCATAGTTGAAAGACACCATGGCAC
* *
14671629 CTGATATGAAACGTGTAAGACCCTGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAG
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAG
* *
14671694 ACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
* *
14671759 ATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
131 ATGGCAACATGACAGAAAACGAGTAAGACCATAGTTGAAAGACACCATGGCA
14671811 TCATGTCAAA
Statistics
Matches: 159, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
182 1 0.01
183 158 0.99
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (183 bp):
CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAG
ACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
ATGGCAACATGACAGAAAACGAGTAAGACCATAGTTGAAAGACACCATGGCAC
Found at i:14674046 original size:43 final size:44
Alignment explanation
Indices: 14673993--14674106 Score: 151
Period size: 43 Copynumber: 2.6 Consensus size: 44
14673983 ATGCCATATA
* * * *
14673993 CCAGATATGGTCTTACATGTTATCTCATAT-CGATGCCAATGTC
1 CCAGACATGGTCTTACATGTAATCTCATATACAATGCAAATGTC
* *
14674036 CCAGACATGGTCTTACACGTAATCACA-ATACAATGCAAATGTC
1 CCAGACATGGTCTTACATGTAATCTCATATACAATGCAAATGTC
*
14674079 CCAGGCATGGTCTTACATGTAATCTCAT
1 CCAGACATGGTCTTACATGTAATCTCAT
14674107 CTCGGCAATC
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
42 2 0.03
43 58 0.97
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (44 bp):
CCAGACATGGTCTTACATGTAATCTCATATACAATGCAAATGTC
Found at i:14674294 original size:35 final size:35
Alignment explanation
Indices: 14674228--14674294 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
14674218 TTCATAGCAG
* **
14674228 TTCAATAACAAATAAGCGTATATAATTCAATTCAA
1 TTCAATAACAAATAAGCATATATAACACAATTCAA
* *
14674263 TTCAATAATAAATAAGCATTTATAACACAATT
1 TTCAATAACAAATAAGCATATATAACACAATT
14674295 TAAATATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.33
Consensus pattern (35 bp):
TTCAATAACAAATAAGCATATATAACACAATTCAA
Found at i:14676182 original size:12 final size:13
Alignment explanation
Indices: 14676167--14676212 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
14676157 AAATTAAAGG
14676167 GAAA-AAAGGAAA
1 GAAAGAAAGGAAA
*
14676179 GAAA-AGAAGGAAG
1 GAAAGA-AAGGAAA
14676192 GAAAGAAA-GAAA
1 GAAAGAAAGGAAA
14676204 GAAAGAAAG
1 GAAAGAAAG
14676213 AGGAAAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 16 0.55
13 12 0.41
14 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (13 bp):
GAAAGAAAGGAAA
Found at i:14676224 original size:4 final size:4
Alignment explanation
Indices: 14676175--14676213 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
14676165 GGGAAAAAAG
* *
14676175 GAAA GAAAA GAAG GAAG GAAA GAAA GAAA GAAA GAAA GA
1 GAAA G-AAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GA
14676214 GGAAAAGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 28 0.88
5 4 0.12
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:14681519 original size:20 final size:20
Alignment explanation
Indices: 14681494--14681531 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14681484 TGTAATTATA
14681494 AAAAATAAATTTAAAAATTT
1 AAAAATAAATTTAAAAATTT
**
14681514 AAAAATTGATTTAAAAAT
1 AAAAATAAATTTAAAAAT
14681532 ATATAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAAATAAATTTAAAAATTT
Found at i:14681539 original size:20 final size:20
Alignment explanation
Indices: 14681502--14681540 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14681492 TAAAAAATAA
*
14681502 ATTTAAAAATTTAAAAATTG
1 ATTTAAAAATATAAAAATTG
*
14681522 ATTTAAAAATATATAAATT
1 ATTTAAAAATATAAAAATT
14681541 TTAGACCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (20 bp):
ATTTAAAAATATAAAAATTG
Found at i:14682703 original size:3 final size:3
Alignment explanation
Indices: 14682695--14682721 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14682685 ATGTAGCAAA
14682695 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
14682722 TTGTCATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14689440 original size:9 final size:10
Alignment explanation
Indices: 14689419--14689443 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14689409 CTAGAAACCG
14689419 AAAAATTGAA
1 AAAAATTGAA
14689429 AAAAATTGAA
1 AAAAATTGAA
14689439 AAAAA
1 AAAAA
14689444 CAAAATTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (10 bp):
AAAAATTGAA
Found at i:14694999 original size:22 final size:22
Alignment explanation
Indices: 14694955--14694999 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14694945 TTAATCATTA
** **
14694955 TTATTCAGTATTAGTCATTTAT
1 TTATTCAGTAACAGTCAAATAT
14694977 TTATTCAGTAACAGTCAAATAT
1 TTATTCAGTAACAGTCAAATAT
14694999 T
1 T
14695000 CGAAAGTAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (22 bp):
TTATTCAGTAACAGTCAAATAT
Found at i:14695268 original size:17 final size:19
Alignment explanation
Indices: 14695226--14695271 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
14695216 ACGAAATTTT
*
14695226 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
14695245 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
14695263 AA-TATTATT
1 AATTATTATT
14695272 GCATGTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:14697265 original size:26 final size:27
Alignment explanation
Indices: 14697208--14697268 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
14697198 TTTTACTAAA
*
14697208 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAAGTATGAAAATGACCATT
* *
14697235 TTACCCCT-AG-ATGCAAAATGACCGTT
1 ATACCCCTAAGTATG-AAAATGACCATT
14697261 ATACCCCT
1 ATACCCCT
14697269 CAGGTTAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 19 0.66
27 7 0.24
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (27 bp):
ATACCCCTAAGTATGAAAATGACCATT
Found at i:14697615 original size:20 final size:20
Alignment explanation
Indices: 14697572--14697615 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
14697562 GCTGTTTGGT
14697572 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
14697592 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
14697611 TATGG
1 TATGG
14697616 TCAAGGCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:14697686 original size:60 final size:59
Alignment explanation
Indices: 14697610--14697746 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
14697600 AACTGTGTTA
* * * *
14697610 ATATGGTCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGATACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAAGA-GGATACGGCCCAGATTAATACTG
* * *
14697670 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGAGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAGAGGATACGGCCCAGATTAATACTG
14697730 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
14697747 GTTAATACTG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 1 0.02
60 49 0.74
61 16 0.24
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAGAGGATACGGCCCAGATTAATACTG
Found at i:14700611 original size:15 final size:15
Alignment explanation
Indices: 14700593--14700621 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14700583 ATATTTATAA
14700593 AATTATTATTATTAT
1 AATTATTATTATTAT
14700608 AATTATTATTATTA
1 AATTATTATTATTA
14700622 GATAGGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:14702825 original size:20 final size:20
Alignment explanation
Indices: 14702782--14702829 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
14702772 GCTGTTTTGT
14702782 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
14702802 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
14702821 TAT-GGCCAA
1 TATGGGCCAA
14702830 AGCCCAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:14702897 original size:60 final size:60
Alignment explanation
Indices: 14702831--14702956 Score: 150
Period size: 60 Copynumber: 2.1 Consensus size: 60
14702821 TATGGCCAAA
* *
14702831 GCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTGATATGGGCT-AG
1 GCCCAATATACTCT-GA-TATGTAA-AGGGCTACAGCCCAGATTAATACTGATATGGGCTAAG
* * *
14702891 GCCCAATATACTCTGATACTGTAAGGGGCTATAGCCCAGATTAATATTGATATGGGCTAAG
1 GCCCAATATACTCTGATA-TGTAAAGGGCTACAGCCCAGATTAATACTGATATGGGCTAAG
14702952 GCCCA
1 GCCCA
14702957 GTTAACATTG
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
59 1 0.02
60 41 0.72
61 15 0.26
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (60 bp):
GCCCAATATACTCTGATATGTAAAGGGCTACAGCCCAGATTAATACTGATATGGGCTAAG
Found at i:14702956 original size:28 final size:27
Alignment explanation
Indices: 14702916--14702968 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
14702906 ATACTGTAAG
*
14702916 GGGCTATAGCCCAGATTAATATTGATAT
1 GGGCTATAGCCCAG-TTAACATTGATAT
14702944 GGGCTA-AGGCCCAGTTAACATTGAT
1 GGGCTATA-GCCCAGTTAACATTGAT
14702969 TTCTGAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (27 bp):
GGGCTATAGCCCAGTTAACATTGATAT
Found at i:14703652 original size:16 final size:17
Alignment explanation
Indices: 14703620--14703652 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14703610 CATCAAGAAG
14703620 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
14703638 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
14703653 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:14704532 original size:21 final size:21
Alignment explanation
Indices: 14704490--14704533 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14704480 AATTTTCCCT
*
14704490 TTTCTTCCTTTCTTCTCTTTG
1 TTTCTTCCTTTCTTCTCCTTG
*
14704511 TTTCTTTCTTT-TTCTCCCTTG
1 TTTCTTCCTTTCTTCT-CCTTG
14704532 TT
1 TT
14704534 CTCTGGTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.00, C:0.27, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTCTTCCTTTCTTCTCCTTG
Found at i:14712137 original size:20 final size:20
Alignment explanation
Indices: 14712112--14712157 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
14712102 ATTGGGCCTT
14712112 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
14712132 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
14712151 GCCCATA
1 GCCCATA
14712158 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:14712166 original size:19 final size:20
Alignment explanation
Indices: 14712124--14712167 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
14712114 CCATATTAAC
** *
14712124 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
14712144 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
14712163 ACAGT
1 ACAGT
14712168 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:14718940 original size:53 final size:52
Alignment explanation
Indices: 14718859--14719016 Score: 174
Period size: 52 Copynumber: 3.0 Consensus size: 52
14718849 CGGACCACAT
* * * * *
14718859 ATCATACCAATGCCATATCCCGGATATGGTATTATACGGAATCACATAATCAC
1 ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCAC-GAATCAC
* * *
14718912 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGGAT-ACGAATCAC
1 ATCATACCGATGCCATAGCCCGGCTATGGTCTTATAC-GGAATCACGAATCAC
** * * *
14718964 ATGGTACCGATACCATAGCCCGGCTATGGTCTTATACGGAATCATGTATCAC
1 ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCACGAATCAC
14719016 A
1 A
14719017 GCTTTTCCGT
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
51 4 0.05
52 46 0.53
53 33 0.38
54 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (52 bp):
ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCACGAATCAC
Found at i:14721203 original size:30 final size:29
Alignment explanation
Indices: 14721169--14721230 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 29
14721159 ATTTGTTGGG
14721169 CAAACAAATTTACATATTTTACAACCAACA
1 CAAACAAATTTACATATTTTACAA-CAACA
14721199 CAAACAAATTTACATATTTTACAACAACA
1 CAAACAAATTTACATATTTTACAACAACA
14721228 CAA
1 CAA
14721231 TCTTATGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 8 0.25
30 24 0.75
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (29 bp):
CAAACAAATTTACATATTTTACAACAACA
Found at i:14725242 original size:24 final size:24
Alignment explanation
Indices: 14725215--14725261 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
14725205 GGTTAAACTA
*
14725215 TTCTAAAACACTGTAGTTAGTATG
1 TTCTAAAACACTATAGTTAGTATG
*
14725239 TTCTAAAAGACTATAGTTAGTAT
1 TTCTAAAACACTATAGTTAGTAT
14725262 TCTTTGAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (24 bp):
TTCTAAAACACTATAGTTAGTATG
Found at i:14744239 original size:20 final size:18
Alignment explanation
Indices: 14744211--14744249 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
14744201 ACCTGCCAGA
*
14744211 AGTAAATAAAAGAAAATTT
1 AGTAAAT-AAACAAAATTT
14744230 AGTAATATAAACAAAATTT
1 AGTAA-ATAAACAAAATTT
14744249 A
1 A
14744250 AATTGCAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.28
Consensus pattern (18 bp):
AGTAAATAAACAAAATTT
Found at i:14751511 original size:2 final size:2
Alignment explanation
Indices: 14751506--14751537 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14751496 CCATGAAATA
14751506 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14751538 CAAACCGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14752161 original size:38 final size:33
Alignment explanation
Indices: 14752080--14752147 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
14752070 ATCAACTCAA
14752080 TAACATAATCAACTTATTTAAACCAAACCAAAC
1 TAACATAATCAACTTATTTAAACCAAACCAAAC
14752113 TAACATAATCAACTTATTTAAACCAAACCAAAC
1 TAACATAATCAACTTATTTAAACCAAACCAAAC
14752146 TA
1 TA
14752148 TACCATCATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (33 bp):
TAACATAATCAACTTATTTAAACCAAACCAAAC
Found at i:14769496 original size:33 final size:33
Alignment explanation
Indices: 14769459--14769524 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
14769449 CATTGATCAA
14769459 AATTCCTGATCATCCAATGCAAATGTTCGTTTT
1 AATTCCTGATCATCCAATGCAAATGTTCGTTTT
14769492 AATTCCTGATCATCCAATGCAAATGTTCGTTTT
1 AATTCCTGATCATCCAATGCAAATGTTCGTTTT
14769525 CTTAAGTCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.39
Consensus pattern (33 bp):
AATTCCTGATCATCCAATGCAAATGTTCGTTTT
Found at i:14770161 original size:10 final size:10
Alignment explanation
Indices: 14770148--14770213 Score: 68
Period size: 10 Copynumber: 6.9 Consensus size: 10
14770138 AAAAAATCTC
14770148 TTAATATAAT
1 TTAATATAAT
14770158 TTAATATAA-
1 TTAATATAAT
14770167 --AATACTAAT
1 TTAATA-TAAT
*
14770176 TTAATTTAAT
1 TTAATATAAT
* *
14770186 ATAAAATAAT
1 TTAATATAAT
14770196 TTAA-ATAAT
1 TTAATATAAT
14770205 TTAATATAA
1 TTAATATAA
14770214 AAATAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
7 4 0.09
8 3 0.07
9 9 0.20
10 27 0.59
11 3 0.07
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (10 bp):
TTAATATAAT
Found at i:14773634 original size:23 final size:24
Alignment explanation
Indices: 14773591--14773641 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
14773581 ATATTTTTAT
*
14773591 TATTAAAATAGTAATATAAAATA-
1 TATTAAAAAAGTAATATAAAATAC
*
14773614 TATTAAATAAAGTATTA-AAAATAC
1 TATTAAA-AAAGTAATATAAAATAC
14773638 TATT
1 TATT
14773642 TATTACTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (24 bp):
TATTAAAAAAGTAATATAAAATAC
Found at i:14775091 original size:15 final size:15
Alignment explanation
Indices: 14775071--14775101 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14775061 ATAATTTTAT
14775071 TATTGGTTGTAGTCA
1 TATTGGTTGTAGTCA
14775086 TATTGGTTGTAGTCA
1 TATTGGTTGTAGTCA
14775101 T
1 T
14775102 GTTCTATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.26, T:0.48
Consensus pattern (15 bp):
TATTGGTTGTAGTCA
Found at i:14777437 original size:17 final size:18
Alignment explanation
Indices: 14777396--14777438 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
14777386 TGTATTTACT
14777396 TATTATATAAGTAAATAA
1 TATTATATAAGTAAATAA
*
14777414 TGA-TATA-AAGTAAATTA
1 T-ATTATATAAGTAAATAA
14777431 TATTATAT
1 TATTATAT
14777439 TATATAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
16 1 0.05
17 14 0.67
18 5 0.24
19 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (18 bp):
TATTATATAAGTAAATAA
Found at i:14777521 original size:24 final size:25
Alignment explanation
Indices: 14777475--14777521 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
14777465 TAAAGAATGA
*
14777475 ATAAATAAAATAAAAGAAATAAAAC
1 ATAAAGAAAATAAAAGAAATAAAAC
*
14777500 ATAAAGAAAA-AAGAGAAATAAA
1 ATAAAGAAAATAAAAGAAATAAA
14777522 GGCACGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.13
Consensus pattern (25 bp):
ATAAAGAAAATAAAAGAAATAAAAC
Found at i:14777559 original size:20 final size:18
Alignment explanation
Indices: 14777534--14777573 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 18
14777524 CACGAATAGC
14777534 AGGGAAAGAAAGAAGGAAAA
1 AGGGAAAGAAA-AA-GAAAA
14777554 AGGGAAAGAAAAAGAAAA
1 AGGGAAAGAAAAAGAAAA
14777572 AG
1 AG
14777574 AAAATTTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 2 0.10
20 11 0.55
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AGGGAAAGAAAAAGAAAA
Found at i:14778365 original size:20 final size:20
Alignment explanation
Indices: 14778340--14778388 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
14778330 ATTCCGATTG
* *
14778340 TGTGTCGATGAGACATTATA
1 TGTGTCGACGAGACACTATA
* *
14778360 TGTGTCAACGATACACTATA
1 TGTGTCGACGAGACACTATA
14778380 TGTGTCGAC
1 TGTGTCGAC
14778389 TACTGTTACT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (20 bp):
TGTGTCGACGAGACACTATA
Found at i:14779517 original size:22 final size:22
Alignment explanation
Indices: 14779466--14779520 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
14779456 GTTAGCTTAC
* *
14779466 CACAGACGTGTCACATCAGCCA
1 CACAGGCGTGTCACACCAGCCA
*
14779488 CACAGGCGTGTCACACCAGCCC
1 CACAGGCGTGTCACACCAGCCA
*
14779510 CACTGGCGTGT
1 CACAGGCGTGT
14779521 TGTACTATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.24, C:0.38, G:0.24, T:0.15
Consensus pattern (22 bp):
CACAGGCGTGTCACACCAGCCA
Found at i:14782459 original size:21 final size:21
Alignment explanation
Indices: 14782430--14782507 Score: 97
Period size: 21 Copynumber: 3.8 Consensus size: 21
14782420 TGGGTGGATC
*
14782430 AGCTTTTATGAGCTTCTATTA
1 AGCTCTTATGAGCTTCTATTA
* * *
14782451 AGCTCTTATGAGATTTTGTTA
1 AGCTCTTATGAGCTTCTATTA
*
14782472 AGCTCTTACGAGCTTCTATTA
1 AGCTCTTATGAGCTTCTATTA
14782493 AGCT-TT-TGAGCTTCT
1 AGCTCTTATGAGCTTCT
14782508 GTTGGCTTAT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
19 8 0.17
20 2 0.04
21 38 0.79
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.45
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCTATTA
Found at i:14791613 original size:49 final size:49
Alignment explanation
Indices: 14791533--14791630 Score: 151
Period size: 49 Copynumber: 2.0 Consensus size: 49
14791523 CATGTTGTTG
* * * *
14791533 TATTTCATCCGGGTAACTTACATGTGCTGTTTGTTGCCACTTTTTAACA
1 TATTTCATCCGGATAACGTACATATGCTGTTTGTTGCCACCTTTTAACA
*
14791582 TATTTCATCCGGATAACGTACATATGTTGTTTGTTGCCACCTTTTAACA
1 TATTTCATCCGGATAACGTACATATGCTGTTTGTTGCCACCTTTTAACA
14791631 CTCCTCATTG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.42
Consensus pattern (49 bp):
TATTTCATCCGGATAACGTACATATGCTGTTTGTTGCCACCTTTTAACA
Found at i:14806699 original size:49 final size:48
Alignment explanation
Indices: 14806620--14806716 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 48
14806610 CATGTTGTTG
* * * * *
14806620 TATTTCATCTGGTAACTTACATGTGCTGTTTGTTGCTACTTTTTAACA
1 TATTTCATCCGGTAACGTACATATGCTGTTTGTTGCCACCTTTTAACA
*
14806668 TATTTCATCCGGATAACGTACATATGTTGTTTGTTGCCACCTTTTAACA
1 TATTTCATCCGG-TAACGTACATATGCTGTTTGTTGCCACCTTTTAACA
14806717 CTAGGCAATG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
48 11 0.26
49 31 0.74
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (48 bp):
TATTTCATCCGGTAACGTACATATGCTGTTTGTTGCCACCTTTTAACA
Found at i:14808205 original size:5 final size:5
Alignment explanation
Indices: 14808195--14808231 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
14808185 CTGTGTGTTC
14808195 TTTAT TTTA- TTTA- TTTATT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTT
14808232 TCACAAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 8 0.27
5 18 0.60
6 4 0.13
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:14811937 original size:93 final size:93
Alignment explanation
Indices: 14811825--14811996 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
14811815 CGCCCATAAG
* *
14811825 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14811890 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
14811918 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14811983 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
14811997 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:14811993 original size:46 final size:46
Alignment explanation
Indices: 14811818--14811993 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
14811808 TGTAACCCGC
* * *
14811818 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
14811864 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
14811914 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
14811957 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
14811994 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:14813432 original size:42 final size:42
Alignment explanation
Indices: 14813373--14813453 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
14813363 AGAAGAGAAA
*
14813373 TTAAACCTCCAAAGAAGTATGCCGAGGCTGATCTAGTTGCTT
1 TTAAACCTCCAAAGAAGTATGCCGAGGATGATCTAGTTGCTT
*
14813415 TTAAACCTTCAAAGAAGTATGCCGAGGATGATCTAGTTG
1 TTAAACCTCCAAAGAAGTATGCCGAGGATGATCTAGTTG
14813454 TTTACGCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (42 bp):
TTAAACCTCCAAAGAAGTATGCCGAGGATGATCTAGTTGCTT
Found at i:14820169 original size:5 final size:5
Alignment explanation
Indices: 14820159--14820183 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14820149 GCTTTACTCT
14820159 GATTG GATTG GATTG GATTG GATTG
1 GATTG GATTG GATTG GATTG GATTG
14820184 AAACCAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (5 bp):
GATTG
Found at i:14824536 original size:21 final size:22
Alignment explanation
Indices: 14824510--14824551 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
14824500 AATAATTTGA
*
14824510 TAAAAAAATAAATTTA-ATGAT
1 TAAAAAAATAAAATTAGATGAT
*
14824531 TAAAAAGATAAAATTAGATGA
1 TAAAAAAATAAAATTAGATGA
14824552 AATATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.29
Consensus pattern (22 bp):
TAAAAAAATAAAATTAGATGAT
Found at i:14828261 original size:22 final size:23
Alignment explanation
Indices: 14828210--14828271 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
14828200 TATATATTAT
*
14828210 AAATTAACATAATTAT-AAGTATA
1 AAATTAA-ATAATTATAAAATATA
* *
14828233 TATTTAAATAATTATAAAATA-A
1 AAATTAAATAATTATAAAATATA
14828255 AAATTAAATAATT-TAAA
1 AAATTAAATAATTATAAA
14828272 TTACCCACAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 4 0.12
22 20 0.61
23 9 0.27
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATTAAATAATTATAAAATATA
Found at i:14831880 original size:22 final size:24
Alignment explanation
Indices: 14831852--14831898 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
14831842 TGAGTTTAAT
14831852 TTTTATAAT-ATATAAATA-AATA
1 TTTTATAATAATATAAATAGAATA
*
14831874 TTTTATAATAATTTAAATAGAATA
1 TTTTATAATAATATAAATAGAATA
14831898 T
1 T
14831899 ATATTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.41
23 8 0.36
24 5 0.23
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
TTTTATAATAATATAAATAGAATA
Found at i:14833231 original size:13 final size:13
Alignment explanation
Indices: 14833213--14833237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14833203 CAATATATTT
14833213 ATTAATTAAAAAC
1 ATTAATTAAAAAC
14833226 ATTAATTAAAAA
1 ATTAATTAAAAA
14833238 TAAAAAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:14844316 original size:15 final size:16
Alignment explanation
Indices: 14844281--14844319 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
14844271 GGCAATTTTG
14844281 TAAA-TAAATTGAAGT
1 TAAATTAAATTGAAGT
*
14844296 TTAATTAAATT-AAGT
1 TAAATTAAATTGAAGT
14844311 TAAATTAAA
1 TAAATTAAA
14844320 GAATGAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (16 bp):
TAAATTAAATTGAAGT
Found at i:14845311 original size:21 final size:21
Alignment explanation
Indices: 14845264--14845323 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
14845254 ATTGGTTGGA
* * **
14845264 TAAGCTCTTAGGAACTTCTGT
1 TAAGCTCTTATGAGCTTCTAC
*
14845285 TCAGCTCTTATGAGCTTCTAC
1 TAAGCTCTTATGAGCTTCTAC
14845306 TAAGCT-TT-TGAGCTTCTA
1 TAAGCTCTTATGAGCTTCTA
14845324 TTGGTGTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
19 10 0.30
20 2 0.06
21 21 0.64
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.40
Consensus pattern (21 bp):
TAAGCTCTTATGAGCTTCTAC
Found at i:14850053 original size:6 final size:6
Alignment explanation
Indices: 14850042--14850090 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
14850032 AAAAAGGGAA
* *
14850042 AAAAAT AAAAAT AAAACT AAAACT AAAAAT AAGAAAAT AAAAACT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -A-AAAAT AAAAA-T AAAA
14850091 GAAAATAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
6 26 0.68
7 7 0.18
8 5 0.13
ACGTcount: A:0.78, C:0.06, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:14853331 original size:7 final size:7
Alignment explanation
Indices: 14853319--14853343 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14853309 TTATAAACTT
14853319 AAATATA
1 AAATATA
14853326 AAATATA
1 AAATATA
14853333 AAATATA
1 AAATATA
14853340 AAAT
1 AAAT
14853344 CAACCCGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAATATA
Found at i:14859381 original size:3 final size:3
Alignment explanation
Indices: 14859375--14859475 Score: 123
Period size: 3 Copynumber: 32.7 Consensus size: 3
14859365 TTCATTTGTT
14859375 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** *
14859423 TTA TTA TTA TTA TCCA TGCC TTCA TTA TTA TTA CTA TT- TTA TTA TTA
1 TTA TTA TTA TTA T-TA T-TA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
14859470 TCTA TT
1 T-TA TT
14859476 CATTTATTTG
Statistics
Matches: 87, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
2 2 0.02
3 76 0.87
4 9 0.10
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:14859556 original size:3 final size:3
Alignment explanation
Indices: 14859548--14859614 Score: 109
Period size: 3 Copynumber: 22.3 Consensus size: 3
14859538 GAACATATAA
14859548 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
14859596 TAT T-T TAT CTGT TAT TAT T
1 TAT TAT TAT -TAT TAT TAT T
14859615 TATTTATATA
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
2 2 0.03
3 56 0.93
4 2 0.03
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14859635 original size:18 final size:18
Alignment explanation
Indices: 14859553--14859635 Score: 82
Period size: 18 Copynumber: 4.6 Consensus size: 18
14859543 TATAATATTA
*
14859553 TTATTATTATTATTAT-TA
1 TTATTATTATT-TTATATG
*
14859571 TTATTATTATTATTAT-TA
1 TTATTATTATT-TTATATG
*
14859589 TTATTATTATTTTATCTG
1 TTATTATTATTTTATATG
14859607 TTATTATTTATTTATATATG
1 TTATTA-TTATTT-TATATG
14859627 TT-TTATTAT
1 TTATTATTAT
14859636 AAATTGTACC
Statistics
Matches: 60, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
17 4 0.07
18 40 0.67
19 9 0.15
20 7 0.12
ACGTcount: A:0.29, C:0.01, G:0.02, T:0.67
Consensus pattern (18 bp):
TTATTATTATTTTATATG
Found at i:14859793 original size:21 final size:21
Alignment explanation
Indices: 14859765--14859814 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
14859755 TTCATGTGCA
14859765 TATTTTATCATTAGT-ATTA-T
1 TATTTTATCATT-GTCATTATT
14859785 TATTGTTATCATTGTCATTATT
1 TATT-TTATCATTGTCATTATT
14859807 TATTTTAT
1 TATTTTAT
14859815 TTTTATTTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.22
21 16 0.59
22 5 0.19
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (21 bp):
TATTTTATCATTGTCATTATT
Found at i:14862289 original size:19 final size:16
Alignment explanation
Indices: 14862248--14862291 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
14862238 TTTTTGCATT
14862248 CATTACATTGCATCTG
1 CATTACATTGCATCTG
*
14862264 TATTACATTGCATCATATG
1 CATTACATTGCATC---TG
14862283 CATTACATT
1 CATTACATT
14862292 TCAAAGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 13 0.57
19 10 0.43
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (16 bp):
CATTACATTGCATCTG
Found at i:14864967 original size:40 final size:40
Alignment explanation
Indices: 14864917--14865144 Score: 370
Period size: 40 Copynumber: 5.7 Consensus size: 40
14864907 AGTATTTGTT
14864917 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
14864957 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
14864997 CAAATGCCTTCGGCACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
14865037 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
14865077 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
14865116 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
14865145 CATCCGAATA
Statistics
Matches: 174, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.20
40 138 0.79
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:14868490 original size:45 final size:45
Alignment explanation
Indices: 14868317--14868490 Score: 183
Period size: 45 Copynumber: 3.9 Consensus size: 45
14868307 GGTGAATCCA
* * * *
14868317 CAAATCTTATCTT-CCTGAAGTAGCAGTGGAACAGATTGAAGTTA-
1 CAAATCTCAT-TTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAG
* * * * *
14868361 -AAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAG
1 CAAATCTCATTTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAG
* * * *
14868405 CAAATCTCATTTCTCTGAAGTTACAGTAGAGCAGACTGAAGATAG
1 CAAATCTCATTTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAG
* *
14868450 CAAATCTCATTTCCCTGAAGTTGCAGTGGAATAGATTGAAG
1 CAAATCTCATTTCCCTGAAGTTGCAGTGGAACAGACTGAAG
14868491 CTGTAAATAA
Statistics
Matches: 107, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
42 1 0.01
43 34 0.32
45 72 0.67
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (45 bp):
CAAATCTCATTTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAG
Found at i:14868569 original size:41 final size:41
Alignment explanation
Indices: 14868508--14868668 Score: 99
Period size: 41 Copynumber: 3.7 Consensus size: 41
14868498 TAAACAAATC
** *
14868508 TTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAACT
1 TTATCTCCCTGAAGTAGCAGTAGAGCAGATCATAGCAAACT
* * **
14868549 TTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAAT
1 TTATCTCCCTGAAGTAGCAGTAGAGCAGA-T----C-AT-AGCAAAC---T
* * * * *
14868600 CTTATCTCTCTGAAGTTGCAATAGAGCAAATCATAGCAAACC
1 -TTATCTCCCTGAAGTAGCAGTAGAGCAGATCATAGCAAACT
*
14868642 TTATCTCCCTGAAGTAGTAGT-GAGCAG
1 TTATCTCCCTGAAGTAGCAGTAGAGCAG
14868669 GTTGAAGTTA
Statistics
Matches: 88, Mismatches: 21, Indels: 23
0.67 0.16 0.17
Matches are distributed among these distances:
40 5 0.06
41 41 0.47
42 1 0.01
45 5 0.06
46 3 0.03
47 3 0.03
48 5 0.06
51 2 0.02
52 23 0.26
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (41 bp):
TTATCTCCCTGAAGTAGCAGTAGAGCAGATCATAGCAAACT
Found at i:14868572 original size:93 final size:93
Alignment explanation
Indices: 14868446--14868984 Score: 388
Period size: 93 Copynumber: 6.0 Consensus size: 93
14868436 CAGACTGAAG
* * * * * *
14868446 ATAGCAAATCTCATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTGTAAATAAACAAATCTTA
1 ATAGCAAACCTTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTA
* * *
14868511 TCTCTTTGAAGTTGCAGTAGAGCAGATC
66 TCTCTCTGAAGTTGCAATAGAGCAAATC
*
14868539 ATAGCAAACTTTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTA
1 ATAGCAAACCTTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTA
14868604 TCTCTCTGAAGTTGCAATAGAGCAAATC
66 TCTCTCTGAAGTTGCAATAGAGCAAATC
* * * *
14868632 ATAGCAAACCTTATCTCCCTGAAGTAGTAGT-GAGCAGGTTGAAG---T---T--A-AAGTCTTA
1 ATAGCAAACCTTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTA
* * *
14868687 TCTCTCTAAAGTTGCAGTGGAGTAGGCTAAA-G
66 TCTCTCTGAAGTTGCAAT--AG-A-GC-AAATC
* * * * * * * * * *
14868719 ATAGCGAATCTTATTTCTCTAAAGTTGCAGTGGAACAGATTAAAGCTATAAGT-TACAGATCTTA
1 ATAGCAAACCTTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTA
* * * *
14868783 TTTCTCTGAAGTTGCAGTCGAGCAGATC
66 TCTCTCTGAAGTTGCAATAGAGCAAATC
* * * * *
14868811 ATAGCAATCCTTATCTCCCTTAAGTAGTAGT-GAGCAGGTTGAAG---T---T--A-AAATCTTA
1 ATAGCAAACCTTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTA
* * * * * *
14868866 TCTCCCTGAAGTTACAGTGGAACAAACTGAAG
66 TCTCTCTGAAGTTGCAATAGAGCAAA-T---C
* * * * *
14868898 ATAGCGAA-CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAAT-TACAGATCTTA
1 ATAGCAAACCTTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTA
* *
14868961 TCTCTCTGAAGTAGCAATGGAGCA
66 TCTCTCTGAAGTTGCAATAGAGCA
14868985 GGTTAAAGTT
Statistics
Matches: 350, Mismatches: 68, Indels: 54
0.74 0.14 0.11
Matches are distributed among these distances:
83 50 0.14
84 3 0.01
85 3 0.01
86 20 0.06
87 43 0.12
88 14 0.04
89 1 0.00
90 1 0.00
91 13 0.04
92 36 0.10
93 114 0.33
94 3 0.01
95 27 0.08
96 22 0.06
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (93 bp):
ATAGCAAACCTTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTA
TCTCTCTGAAGTTGCAATAGAGCAAATC
Found at i:14868699 original size:83 final size:83
Alignment explanation
Indices: 14868599--14868883 Score: 248
Period size: 83 Copynumber: 3.3 Consensus size: 83
14868589 AATAAACAAA
* *
14868599 TCTTATCTCTCTGAAGTTGCAATAGAGCAAATCATAGCAAACCTTATCTCCCTGAAGTAGTAGTG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAAATCATAGCAAACCTTATCTCCCTAAAGTAGTAGTG
14868664 AGCAGGTTGAAGTTAAAG
66 AGCAGGTTGAAGTTAAAG
* * * * * * *
14868682 TCTTATCTCTCTAAAGTTGCAGTGGAGTAGGCTAAA-GATAGCGAATCTTATTTCTCTAAAGTTG
1 TCTTATCTCTCTGAAGTTGCAGT--AG-A-GC-AAATCATAGCAAACCTTATCTCCCTAAAGTAG
* * * *
14868746 CAGTGGAACAGATTAAAGCTATAAGTTACAG
61 TAGT-GAGCAGGTT---G----AAGTTAAAG
* * * * *
14868777 ATCTTATTTCTCTGAAGTTGCAGTCGAGCAGATCATAGCAATCCTTATCTCCCTTAAGTAGTAGT
1 -TCTTATCTCTCTGAAGTTGCAGTAGAGCAAATCATAGCAAACCTTATCTCCCTAAAGTAGTAGT
*
14868842 GAGCAGGTTGAAGTTAAAA
65 GAGCAGGTTGAAGTTAAAG
* *
14868861 TCTTATCTCCCTGAAGTTACAGT
1 TCTTATCTCTCTGAAGTTGCAGT
14868884 GGAACAAACT
Statistics
Matches: 154, Mismatches: 33, Indels: 30
0.71 0.15 0.14
Matches are distributed among these distances:
83 41 0.27
84 7 0.05
85 2 0.01
86 1 0.01
87 26 0.17
88 11 0.07
91 10 0.06
92 25 0.16
93 1 0.01
94 1 0.01
95 8 0.05
96 21 0.14
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (83 bp):
TCTTATCTCTCTGAAGTTGCAGTAGAGCAAATCATAGCAAACCTTATCTCCCTAAAGTAGTAGTG
AGCAGGTTGAAGTTAAAG
Done.