Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 52 of 345
Found at i:14868814 original size:179 final size:178
Alignment explanation
Indices: 14868539--14869035 Score: 625
Period size: 179 Copynumber: 2.8 Consensus size: 178
14868529 AGAGCAGATC
* * * * * *
14868539 ATAGCAAACTTTATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTA
1 ATAGCGAAC-TTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAAT-TACAGATCTTA
*
14868604 TCTCTCTGAAGTTGCAATAGAGCAAATCATAGCAAACCTTATCTCCCTGAAGTAGTAGTGAGCAG
64 TCTCTCTGAAGTTGCAATAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTAGTAGTGAGCAG
* * * ** **
14868669 GTTGAAGTTAAAGTCTTATCTCTCTAAAGTTGCAGTGGAGTAGGCTAAAG
129 GTTGAAGTTAAAATCTTATCTCCCTAAAGTTACAGTGGAACAAACTAAAG
* * *
14868719 ATAGCGAATCTTATTTCTCTAAAGTTGCAGTGGAACAGATTAAAGCTATAAGTTACAGATCTTAT
1 ATAGCGAA-CTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTAT
* * * * *
14868784 TTCTCTGAAGTTGCAGTCGAGCAGATCATAGCAATCCTTATCTCCCTTAAGTAGTAGTGAGCAGG
65 CTCTCTGAAGTTGCAATAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTAGTAGTGAGCAGG
* *
14868849 TTGAAGTTAAAATCTTATCTCCCTGAAGTTACAGTGGAACAAACTGAAG
130 TTGAAGTTAAAATCTTATCTCCCTAAAGTTACAGTGGAACAAACTAAAG
*
14868898 ATAGCGAACTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTATC
1 ATAGCGAACTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTATC
* * * * * * * * *
14868963 TCTCTGAAGTAGCAATGGAGCAGGTTAAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
66 TCTCTGAAGTTGCAATAGAGCAGATCATAG-CAAA-CCTTATCTCCCTGAAGTAGTAGT-GAGCA
*
14869028 GGCTGAAG
128 GGTTGAAG
14869036 ATAGCAAATC
Statistics
Matches: 271, Mismatches: 42, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
178 76 0.28
179 119 0.44
180 63 0.23
181 13 0.05
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (178 bp):
ATAGCGAACTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTATC
TCTCTGAAGTTGCAATAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTAGTAGTGAGCAGGT
TGAAGTTAAAATCTTATCTCCCTAAAGTTACAGTGGAACAAACTAAAG
Found at i:14869018 original size:272 final size:266
Alignment explanation
Indices: 14868433--14869024 Score: 561
Period size: 272 Copynumber: 2.2 Consensus size: 266
14868423 AGTTACAGTA
* * * * * * *
14868433 GAGCAGACTGAAGATAGCAAATCTCATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTGTAAA
1 GAGCAGGCTAAAGATAG--AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAA
* *
14868498 TAAACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAACTTTATCTCCCTGAAG
64 TAAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAG
* * *
14868563 TAGCAGTGGAACAGATTGAAGCTATAAATAAACAAATCTTATCTCTCTGAAGTTGCAATAGAGCA
129 TAGCAGTGGAACAGATTGAAG--AT--AT-AACAAATCTTATCTCCCTGAAGTTACAATAGAACA
* * *
14868628 AATCATAGCAAACCTTATCTCCCTGAAGTAGTAGTGAGCAGGTTGAAGTTAAAGTCTTATCTCTC
189 AATCATAGCAAACCTTATCTCCCTGAAGTAGCAGTGAACAGATTGAAGTTAAAGTCTTATCTCTC
* *
14868693 TAAAGTTGCAGTG
254 TAAAGTAGCAATG
* * * * *
14868706 GAGTAGGCTAAAGATAGCGAATCTTATTTCTCTAAAGTTGCAGTGGAACAGATTAAAGCTATAAG
1 GAGCAGGCTAAAGATA--GAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAA
* * * * * *
14868771 T-TACAGATCTTATTTCTCTGAAGTTGCAGTCGAGCAGATCATAGCAATCCTTATCTCCCTTAAG
64 TAAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAG
* * * * *
14868835 TAGTAGT-GAGCAGGTTGAAG-T-T-A-AAATCTTATCTCCCTGAAGTTACAGTGGAACAAACTG
129 TAGCAGTGGAACAGATTGAAGATATAACAAATCTTATCTCCCTGAAGTTACAATAGAACAAA-T-
* * * *
14868895 AAGATAGCGAA-CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCT
192 --CATAGCAAACCTTATCTCCCTGAAGTAGCAGT-GAACAGATTGAAG-T-T--A--A-AG-TCT
*
14868959 TATCTCTCTGAAGTAGCAATG
246 TATCTCTCTAAAGTAGCAATG
* *
14868980 GAGCAGGTTAAAGTTA-AAGTCTTATCTCCCTGAAGTTGCAGTGGA
1 GAGCAGGCTAAAGATAGAA-TCTTATCTCCCTGAAGTTGCAGTGGA
14869025 GCAGGCTGAA
Statistics
Matches: 261, Mismatches: 42, Indels: 33
0.78 0.12 0.10
Matches are distributed among these distances:
262 29 0.11
263 2 0.01
265 20 0.08
266 18 0.07
267 1 0.00
268 2 0.01
270 1 0.00
271 13 0.05
272 85 0.33
273 55 0.21
274 34 0.13
275 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (266 bp):
GAGCAGGCTAAAGATAGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATA
AACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTA
GCAGTGGAACAGATTGAAGATATAACAAATCTTATCTCCCTGAAGTTACAATAGAACAAATCATA
GCAAACCTTATCTCCCTGAAGTAGCAGTGAACAGATTGAAGTTAAAGTCTTATCTCTCTAAAGTA
GCAATG
Found at i:14869130 original size:139 final size:139
Alignment explanation
Indices: 14868820--14869216 Score: 394
Period size: 139 Copynumber: 2.9 Consensus size: 139
14868810 CATAGCAATC
* * * * * * *
14868820 CTTATCTCCCTTAAGTAGTAGT-GAGCAGGTTGAAGTTAAAATCTTATCTCCCTGAAGTTACAGT
1 CTTATCTCTCTGAAGTAGCAATGGAGCAGATTAAAGTTAAAATCTTATCTCCCTGAAGTTGCAGT
* ** * * *
14868884 GGAACAAACTGAAGATAGCGAA-CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAA
66 GGAGCAGGCTGAAGATAGCAAATCTCATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAA
14868948 ATTACAGAT
131 ATTACAGAT
* *
14868957 CTTATCTCTCTGAAGTAGCAATGGAGCAGGTTAAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGT
1 CTTATCTCTCTGAAGTAGCAATGGAGCAGATTAAAGTTAAAATCTTATCTCCCTGAAGTTGCAGT
* * **
14869022 GGAGCAGGCTGAAGATAGCAAATCTCATTTCCTTAAAGTTGTAGTAGG-GTAGATTGAAGCTA-A
66 GGAGCAGGCTGAAGATAGCAAATCTCATTTCCCTGAAGTTGTAGT-GGAACAGATTGAAGCTATA
* *
14869085 AGGTTGC-GAGT
130 A-ATTACAGA-T
* * * *** * *
14869096 CTTATCT-TCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAAACCTTATCTCCCTAAAGTTGCA
1 CTTATCTCT-CTGAAGTAGCAATGGAGCAGATTAAAGTTA-AAATCTTATCTCCCTGAAGTTGCA
* * * * *
14869160 GTGGAGCAGGTTAAAGTTA-CAAATCTCATCTCCCTGAAGTTGTAGTGGAGCAGATTG
64 GTGGAGCAGGCTGAAGATAGCAAATCTCATTTCCCTGAAGTTGTAGTGGAACAGATTG
14869217 TAGATGCGAG
Statistics
Matches: 216, Mismatches: 36, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
137 18 0.08
138 64 0.30
139 95 0.44
140 39 0.18
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (139 bp):
CTTATCTCTCTGAAGTAGCAATGGAGCAGATTAAAGTTAAAATCTTATCTCCCTGAAGTTGCAGT
GGAGCAGGCTGAAGATAGCAAATCTCATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAA
ATTACAGAT
Found at i:14869159 original size:44 final size:44
Alignment explanation
Indices: 14869096--14869215 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 44
14869086 GGTTGCGAGT
* *
14869096 CTTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAAC
* * *** *
14869140 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGTTACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAAC
* *
14869184 CTCATCTCCCTGAAGTTGTAGTGGAGCAGATT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
14869216 GTAGATGCGA
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAAC
Found at i:14870888 original size:14 final size:15
Alignment explanation
Indices: 14870869--14870898 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
14870859 CATGCCTTCA
14870869 TTATTATTA-CTATT
1 TTATTATTATCTATT
14870883 TTATTATTATCTATT
1 TTATTATTATCTATT
14870898 T
1 T
14870899 ATTTATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTATTATCTATT
Found at i:14871136 original size:21 final size:21
Alignment explanation
Indices: 14871108--14871155 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
14871098 TTCATGTGCA
14871108 TATTTTATCATTAGT-ATTA-T
1 TATTTTATCATT-GTCATTATT
14871128 TATTGTTATCATTGTCATTATT
1 TATT-TTATCATTGTCATTATT
14871150 TATTTT
1 TATTTT
14871156 TATTATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 6 0.24
21 14 0.56
22 5 0.20
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.62
Consensus pattern (21 bp):
TATTTTATCATTGTCATTATT
Found at i:14871162 original size:13 final size:13
Alignment explanation
Indices: 14871144--14871188 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
14871134 TATCATTGTC
14871144 ATTATTTATTTTT
1 ATTATTTATTTTT
14871157 ATTATTTA-TTTT
1 ATTATTTATTTTT
14871169 ATT-TTTATTTGTT
1 ATTATTTATTT-TT
*
14871182 AATATTT
1 ATTATTT
14871189 GTATTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 4 0.14
12 9 0.32
13 12 0.43
14 3 0.11
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (13 bp):
ATTATTTATTTTT
Found at i:14871621 original size:24 final size:24
Alignment explanation
Indices: 14871589--14871639 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
14871579 ATTAACATTA
14871589 ATAAAAAAGGAGGATCGTATTTTT
1 ATAAAAAAGGAGGATCGTATTTTT
14871613 ATAAAAAAGGAGGATCGTATTTTT
1 ATAAAAAAGGAGGATCGTATTTTT
14871637 ATA
1 ATA
14871640 TTCTTTGCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.33
Consensus pattern (24 bp):
ATAAAAAAGGAGGATCGTATTTTT
Found at i:14872445 original size:15 final size:16
Alignment explanation
Indices: 14872419--14872448 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14872409 TTTAAAATAC
14872419 TTTATAATATATTATT
1 TTTATAATATATTATT
14872435 TTTAT-ATATATTAT
1 TTTATAATATATTAT
14872449 CCAATTTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTATAATATATTATT
Found at i:14874906 original size:20 final size:20
Alignment explanation
Indices: 14874869--14874921 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
14874859 CTTACTTACT
* **
14874869 TTAATTTTTTTAAAATTATA
1 TTAATTTTATTATCATTATA
14874889 -TATATTTTATTATCATTATA
1 TTA-ATTTTATTATCATTATA
14874909 TTAATTTTATTAT
1 TTAATTTTATTAT
14874922 TAAATTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTAATTTTATTATCATTATA
Found at i:14875441 original size:29 final size:28
Alignment explanation
Indices: 14875394--14875476 Score: 130
Period size: 29 Copynumber: 2.9 Consensus size: 28
14875384 TTAAGCCCCC
14875394 AAAAAAACCTAACCCAAAAAAAAAAAAA
1 AAAAAAACCTAACCCAAAAAAAAAAAAA
14875422 AAAAAAACCTAACCCTAAAAAAAAAAAAA
1 AAAAAAACCTAACCC-AAAAAAAAAAAAA
* **
14875451 AGAAAAACCTAACCCCCAAAAAAAAA
1 AAAAAAACCTAACCCAAAAAAAAAAA
14875477 CTAAGAAACC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
28 24 0.47
29 27 0.53
ACGTcount: A:0.73, C:0.20, G:0.01, T:0.05
Consensus pattern (28 bp):
AAAAAAACCTAACCCAAAAAAAAAAAAA
Found at i:14875461 original size:23 final size:23
Alignment explanation
Indices: 14875415--14875462 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
14875405 ACCCAAAAAA
** *
14875415 AAAAAAAAAAAAAACCTAACCCT
1 AAAAAAAAAAAAAACAAAAACCT
*
14875438 AAAAAAAAAAAAAAGAAAAACCT
1 AAAAAAAAAAAAAACAAAAACCT
14875461 AA
1 AA
14875463 CCCCCAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.77, C:0.15, G:0.02, T:0.06
Consensus pattern (23 bp):
AAAAAAAAAAAAAACAAAAACCT
Found at i:14875489 original size:28 final size:28
Alignment explanation
Indices: 14875397--14875476 Score: 115
Period size: 28 Copynumber: 2.8 Consensus size: 28
14875387 AGCCCCCAAA
*
14875397 AAAACCTAACCCAAAAAAAAAAAAAAAA
1 AAAACCTAACCCAAAAAAAAAAAAAAAG
*
14875425 AAAACCTAACCCTAAAAAAAAAAAAAAG
1 AAAACCTAACCCAAAAAAAAAAAAAAAG
**
14875453 AAAAACCTAACCCCCAAAAAAAAA
1 -AAAACCTAACCCAAAAAAAAAAA
14875477 CTAAGAAACC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 26 0.55
29 21 0.45
ACGTcount: A:0.72, C:0.21, G:0.01, T:0.05
Consensus pattern (28 bp):
AAAACCTAACCCAAAAAAAAAAAAAAAG
Found at i:14876326 original size:19 final size:19
Alignment explanation
Indices: 14876246--14876330 Score: 75
Period size: 19 Copynumber: 4.3 Consensus size: 19
14876236 CTAATATTTC
*
14876246 TTTTATTGTAGATATTATTA
1 TTTTA-TGTACATATTATTA
14876266 TTATTAT-TACATACTT-TTA
1 TT-TTATGTACATA-TTATTA
* * *
14876285 TTATATGCATATATATATGTA
1 TTTTATGTACATAT-TAT-TA
14876306 TTTTATGTACATATTATTA
1 TTTTATGTACATATTATTA
14876325 TTTTAT
1 TTTTAT
14876331 ATTATTATTA
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
19 23 0.44
20 9 0.17
21 16 0.31
ACGTcount: A:0.32, C:0.05, G:0.06, T:0.58
Consensus pattern (19 bp):
TTTTATGTACATATTATTA
Found at i:14880299 original size:48 final size:48
Alignment explanation
Indices: 14880244--14880339 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
14880234 GGATGCTATT
14880244 TAAAGAAGTTGAACCGTAAAGAAAAGTAGCGACTCGAAGCAAAAAGGG
1 TAAAGAAGTTGAACCGTAAAGAAAAGTAGCGACTCGAAGCAAAAAGGG
14880292 TAAAGAAGTTGAACCGTAAAGAAAAGTAGCGACTCGAAGCAAAAAGGG
1 TAAAGAAGTTGAACCGTAAAGAAAAGTAGCGACTCGAAGCAAAAAGGG
14880340 AAAACAGTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.48, C:0.12, G:0.27, T:0.12
Consensus pattern (48 bp):
TAAAGAAGTTGAACCGTAAAGAAAAGTAGCGACTCGAAGCAAAAAGGG
Found at i:14886440 original size:70 final size:71
Alignment explanation
Indices: 14886298--14886459 Score: 233
Period size: 71 Copynumber: 2.3 Consensus size: 71
14886288 GAGTTAAGCC
** * *
14886298 TTTT-AATTT-TGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTCTGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCT
14886361 GAGGTA
66 GAGGTA
* *
14886367 TTTTCAATTT-TGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGTCACGC
1 TTTTCAATTTCTGT-TTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGC
14886430 TGAGGTA
65 TGAGGTA
14886437 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTCTGTTTTCAATTT
14886460 ACGTTGTTCA
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
69 4 0.05
70 39 0.47
71 40 0.48
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (71 bp):
TTTTCAATTTCTGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCT
GAGGTA
Found at i:14886644 original size:140 final size:140
Alignment explanation
Indices: 14886393--14887018 Score: 1184
Period size: 140 Copynumber: 4.5 Consensus size: 140
14886383 TTAATTTCAA
14886393 CTCATATTGCGAGAGGTGAGTTGAGCCTCA-GTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
14886457 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
14886522 TCAAAATCAG
131 TCAAAATCAG
14886532 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
14886597 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
14886662 TCAAAATCAG
131 TCAAAATCAG
14886672 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
14886737 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
14886802 TCAAAATCAG
131 TCAAAATCAG
14886812 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
14886877 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
14886942 TCAAAATCAG
131 TCAAAATCAG
14886952 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
14887016 TCA
62 TCA
14887019 TATTGCGAAA
Statistics
Matches: 479, Mismatches: 3, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
139 32 0.07
140 419 0.87
142 23 0.05
143 5 0.01
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:14886875 original size:13 final size:13
Alignment explanation
Indices: 14886857--14886890 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
14886847 CGCTGAGGTA
*
14886857 TTTTCAATTTCTG
1 TTTTCAATTTATG
14886870 TTTTCAATTTATG
1 TTTTCAATTTATG
14886883 TTGTTCAA
1 TT-TTCAA
14886891 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:14887161 original size:78 final size:78
Alignment explanation
Indices: 14887037--14887245 Score: 323
Period size: 78 Copynumber: 2.8 Consensus size: 78
14887027 AAAAAACTTT
* *
14887037 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGTC
1 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTC
14887102 TTTCAAAAAAAAA
66 TTTCAAAAAAAAA
14887115 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGT-
1 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTC
14887179 TTTC-----AAAA
66 TTTCAAAAAAAAA
14887187 TTCAACTCATA-----AGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGT
1 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGT
14887246 TCAAAATAGT
Statistics
Matches: 129, Mismatches: 2, Indels: 11
0.91 0.01 0.08
Matches are distributed among these distances:
67 48 0.37
72 15 0.12
77 4 0.03
78 62 0.48
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (78 bp):
TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTC
TTTCAAAAAAAAA
Found at i:14887218 original size:67 final size:69
Alignment explanation
Indices: 14887052--14887246 Score: 277
Period size: 67 Copynumber: 2.7 Consensus size: 69
14887042 CTCATATTGC
* *
14887052 GAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAATT
1 GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGT-TTTC----AAAAATT
14887117 CAACTCATA
61 CAACTCATA
14887126 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC-AAAATTC
1 ----GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATTC
14887190 AACTCATA
62 AACTCATA
14887198 -AGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
1 GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
14887247 CAAAATAGTT
Statistics
Matches: 115, Mismatches: 2, Indels: 11
0.90 0.02 0.09
Matches are distributed among these distances:
67 49 0.43
72 15 0.13
77 4 0.03
78 47 0.41
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (69 bp):
GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATTCAACT
CATA
Found at i:14887287 original size:46 final size:50
Alignment explanation
Indices: 14887200--14887299 Score: 154
Period size: 47 Copynumber: 2.1 Consensus size: 50
14887190 AACTCATAAG
*
14887200 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC-TGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCGTGTTCA
*
14887249 AAAT-AGTTGAGCCTCAA-ACACGCTGA-GTAATTTCAATTTCGTTTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCGTGTTCA
14887296 AAAT
1 AAAT
14887300 TCAACTCATA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
46 14 0.29
47 17 0.35
48 13 0.27
49 4 0.08
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (50 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCGTGTTCA
Found at i:14887336 original size:117 final size:117
Alignment explanation
Indices: 14887133--14887369 Score: 340
Period size: 117 Copynumber: 2.0 Consensus size: 117
14887123 ATATTGCGAG
*
14887133 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
14887198 AGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC-TGTTCA
66 AGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTTGTTCA
14887249 AAAT-AGTTGAGCCTCAA-ACACGCTGA-GTAATTTCAATTTC-GTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * * *
14887310 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTTTTTCA
66 -----AGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTTGTTCA
14887367 AAA
1 AAA
14887370 AAAAAATCAA
Statistics
Matches: 109, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
112 21 0.19
113 14 0.13
114 8 0.07
115 13 0.12
116 4 0.04
117 41 0.38
118 8 0.07
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (117 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
AGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTTGTTCA
Found at i:14887395 original size:76 final size:73
Alignment explanation
Indices: 14887249--14887597 Score: 393
Period size: 76 Copynumber: 4.7 Consensus size: 73
14887239 TTTCTGTTCA
* * *
14887249 AAAT-AGTTGAGCCTCAA-ACACGCTGA-GTAATTTCAATTTCGTTTTC--AAAATTCAACTCAT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTTTTTCAAAAAAATCAACTCAT
14887309 ATTGCGAG
66 ATTGCGAG
* *
14887317 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTTTTTCAAAAAAAAAATCAACT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTTTTTC---AAAAAAATCAACT
*
14887382 CATATTGTGAG
63 CATATTGCGAG
*
14887393 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC--TTTTTC-AAAAAAATCAACT
14887458 CATATTGCGAG
63 CATATTGCGAG
** * * *
14887469 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCG
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCT-TTTTCAAAAAAATCAACTCA
**
14887534 TATTGTAAG
65 TATTGCGAG
*** * *
14887543 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTT-C-TTTTTCAA
14887598 TTTCTGCCTT
Statistics
Matches: 246, Mismatches: 20, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
68 4 0.02
69 13 0.05
70 8 0.03
71 18 0.07
74 39 0.16
75 4 0.02
76 146 0.59
77 7 0.03
78 7 0.03
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (73 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTTTTTCAAAAAAATCAACTCAT
ATTGCGAG
Found at i:14887576 original size:152 final size:152
Alignment explanation
Indices: 14887295--14887971 Score: 544
Period size: 167 Copynumber: 4.2 Consensus size: 152
14887285 TTTCGTTTTC
* ** * *
14887295 AAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
** * *
14887360 T-TTTTCAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACATGCTGAG
66 TGTTTTC---AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAG
*
14887422 GTATTTTCAATTTCTGTTTTTCAAA
128 GTATTTTCAATTTCTATTTTTCAAA
*
14887447 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* * * * *
14887512 TGTTGTCAAAAAAATCAACTCGTATTGTAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTA
66 TGTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTA
14887577 TTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAA
131 TTTTCAATTT-C-----T--A--T-T---TTTC-AAA
** * *
14887614 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACA--CGCTGAGGTATTTTCAAT
* * * *
14887678 TT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGA
63 TTCTGT-TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGA
*
14887742 GGTATTTTTTCAATTTATATTTTTC-AA
127 GGTA--TTTTCAATTTCTATTTTTCAAA
* * ** * *
14887769 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGCT-GAGGTATTTTCAAT
* * * *
14887833 ATCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGG
63 TTCTG-TTTTCA-A----------AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG
** * *
14887897 CTCACGTGCTGAGCTATTTT-AATTTCTTTTTTTTTTCAAA
116 -TCACACGCTGAGGTATTTTCAATTTC---TATTTTTCAAA
*
14887937 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
14887972 TTTTTAATTT
Statistics
Matches: 428, Mismatches: 52, Indels: 74
0.77 0.09 0.13
Matches are distributed among these distances:
150 37 0.09
152 81 0.19
153 5 0.01
154 1 0.00
155 51 0.12
156 9 0.02
157 9 0.02
158 1 0.00
160 1 0.00
161 1 0.00
162 1 0.00
163 2 0.00
164 5 0.01
165 5 0.01
166 6 0.01
167 95 0.22
168 37 0.09
169 71 0.17
171 10 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (152 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTA
TTTTCAATTTCTATTTTTCAAA
Found at i:14887629 original size:243 final size:245
Alignment explanation
Indices: 14887349--14887971 Score: 732
Period size: 243 Copynumber: 2.5 Consensus size: 245
14887339 TGCTGAGGTA
* *
14887349 TTTTCAATTTCT-TTTTCAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGA
1 TTTTCAATTTCTGTTTTC-AAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AGA
*
14887413 CATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
64 CATGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * **
14887478 GAGCCTCA-A-GACACGCTGAGGTA-ATTTCAATTTCT-GTTGTCAAAAAAATCAACTCGTATTG
129 GAGCCTCAGATCACACACTGAGGTATATTTCAATTTATAGTTGTCAAAAAAATCAACTCACATTG
* **
14887539 TAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGT
194 CAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAAATCCGT
* * ** *
14887591 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTG-TTTTCAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG-A
*
14887656 CATGCGCTGAGCTATTTTCAATTT-TGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAG
64 CAT--GCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAG
* * * *
14887719 TTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACA
127 TTGAGCCTCAGATCACACACTGAGGTA-TATTTCAATTTATAGTTGTCAAAAAAATCAACTCACA
* * * * * * *
14887784 TTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGT
191 TTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAAATCCGT
*
14887839 TTTTCAGA-TTCTGTTTTC----AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCT
1 TTTTCA-ATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC-T--CA
* * * *
14887899 CACGTGCTGAGCTATTTT-AATTTCTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGT
62 GACATGCTGAGCTATTTTCAATTTC---TGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGT
14887963 GAGTTGAGC
124 GAGTTGAGC
14887972 TTTTTAATTT
Statistics
Matches: 324, Mismatches: 38, Indels: 33
0.82 0.10 0.08
Matches are distributed among these distances:
242 18 0.06
243 129 0.40
244 13 0.04
245 32 0.10
246 6 0.02
247 50 0.15
248 75 0.23
249 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (245 bp):
TTTTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGACA
TGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAGATCACACACTGAGGTATATTTCAATTTATAGTTGTCAAAAAAATCAACTCACATTGCA
AGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAAATCCGT
Found at i:14887720 original size:76 final size:76
Alignment explanation
Indices: 14887591--14887971 Score: 309
Period size: 79 Copynumber: 4.7 Consensus size: 76
14887581 CAATTTCCGT
*
14887591 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTT-TGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
14887656 CATGCGCTGAGCTA
63 CACGCGCTGAGCTA
* *
14887670 TTTTCAATTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCA
1 TTTTCAATTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCA
* * *
14887734 CACACTGAGGTA
65 CGCGCTGAGCTA
* * * * * *
14887746 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
** *
14887811 CACATG-TCGAGGTA
63 CACGCGCT-GAGCTA
*** *
14887825 TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTC--AA-----TTTT--G--TCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
14887890 GCCTTGGCTCACGTGCTGAGCTA
54 GCCTTGGCTCACGCGCTGAGCTA
* *
14887913 TTTT-AATTTCTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAA----TTTTGTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
14887972 TTTTTAATTT
Statistics
Matches: 246, Mismatches: 36, Indels: 39
0.77 0.11 0.12
Matches are distributed among these distances:
75 3 0.01
76 48 0.20
77 5 0.02
78 18 0.07
79 71 0.29
80 33 0.13
83 1 0.00
84 8 0.03
85 2 0.01
87 2 0.01
88 54 0.22
89 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
GCGCTGAGCTA
Found at i:14887723 original size:169 final size:166
Alignment explanation
Indices: 14887425--14887749 Score: 447
Period size: 169 Copynumber: 1.9 Consensus size: 166
14887415 TGCTGAGGTA
**
14887425 TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
* * *
14887490 ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTAAGAGGCGAGTTGAG
66 ACGCTGAGCTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAG
* *
14887555 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGT
131 CCTCAGATCACACACCGAGGTATTTTCAATTTCCGT
**
14887591 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
1 TTTTCAATTTCTGCCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-
* * * * *
14887655 TCATGCGCTGAGCTATTTTCAATTT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
64 ACA--CGCTGAGCTAATTTCAATTTCTGT-TGTCAAAAAAATCAACTCATATTGCAAGAGGCGAG
* *
14887719 TTGAGCTTCAGATCACACACTGAGGTATTTT
126 TTGAGCCTCAGATCACACACCGAGGTATTTT
14887750 TTCAATTTAT
Statistics
Matches: 138, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
166 18 0.13
167 42 0.30
168 3 0.02
169 75 0.54
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (166 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
ACGCTGAGCTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAG
CCTCAGATCACACACCGAGGTATTTTCAATTTCCGT
Found at i:14887800 original size:79 final size:75
Alignment explanation
Indices: 14887612--14887803 Score: 249
Period size: 76 Copynumber: 2.5 Consensus size: 75
14887602 TGCCTTTCAA
* * ** *
14887612 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACTGAGCTATTTTCAA
*
14887677 TTTTGTCTTTC
65 TTTTATCTTTC
*
14887688 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-AGATCACACACTGAGCTA--TTTTC
*
14887753 AATTTATATTTTTC
63 AATTT-TATCTTTC
* *
14887767 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
14887804 CTCGGGTCAC
Statistics
Matches: 102, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
75 3 0.03
76 48 0.47
78 10 0.10
79 41 0.40
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTAGATCACACACTGAGCTATTTTCAAT
TTTATCTTTC
Found at i:14887989 original size:30 final size:30
Alignment explanation
Indices: 14887953--14888014 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
14887943 CAACTCATAT
14887953 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
14887983 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
14888013 TG
1 TG
14888015 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:14888122 original size:251 final size:247
Alignment explanation
Indices: 14887416--14888181 Score: 775
Period size: 243 Copynumber: 3.1 Consensus size: 247
14887406 CTCAAGACAT
* *
14887416 GCTGAGGTATTTTCAATTTC---TGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 GCTGAGCTATTTTCAATTTCTTTTTTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * * * * * **
14887478 GAGCCTCA-A-GACACGCTGAGGTA--ATTTCAATTTCT-GTTGTCAAAAAAATCAACTCGTATT
65 GAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATT
** * * *** ** * *
14887538 GTAAGAGGCGAGTTGAGCCTC-AGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCA-ATTT
129 GCGAGAGGTGAGTTGAACCTCGA-GTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAGA-TT
** * *
14887601 CTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGC
192 AAG-TTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
* *
14887661 GCTGAGCTATTTTCAA----TTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 GCTGAGCTATTTTCAATTTCTTTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
14887722 AGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTG
66 AGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTG
* * * * * **
14887787 CGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAGATTCTG
130 CGAGAGGTGAGTTGAACCTCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAGATTAAG
* *
14887852 TTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGT
195 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
14887904 GCTGAGCTATTTT-AATTTCTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
1 GCTGAGCTATTTTCAATTTCTTTTTTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTT
* * * * * * *
14887968 GAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAA
65 GAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAA
*
14888030 CTCATATTGCGAGAGGTGAGTTGAACCTC-AGTCACATATCGAGGTATTTTCAAAATCTGCTTTT
121 CTCACATTGCGAGAGGTGAGTTGAACCTCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTT
14888094 CA-AGTTAAG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
186 CAGA-TTAAGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
*
14888155 GCTGAGCTATTTTCAATTTCTGTTTTT
1 GCTGAGCTATTTTCAATTTCTTTTTTT
14888182 AATGTCTGTT
Statistics
Matches: 448, Mismatches: 46, Indels: 47
0.83 0.09 0.09
Matches are distributed among these distances:
242 2 0.00
243 97 0.22
244 8 0.02
245 27 0.06
246 16 0.04
247 44 0.10
248 75 0.17
249 4 0.01
250 7 0.02
251 96 0.21
252 49 0.11
253 5 0.01
254 13 0.03
255 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (247 bp):
GCTGAGCTATTTTCAATTTCTTTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGC
GAGAGGTGAGTTGAACCTCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAGATTAAGT
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
Found at i:14888894 original size:32 final size:29
Alignment explanation
Indices: 14888836--14888920 Score: 111
Period size: 32 Copynumber: 2.9 Consensus size: 29
14888826 TAAGCCCCCC
14888836 AAAAAACCTAACCC--AAAAAAAAAAAAA
1 AAAAAACCTAACCCAAAAAAAAAAAAAAA
14888863 AAAAAACCTAACCCTAAAAAAAAAAAGAAAAA
1 AAAAAACCTAACCC--AAAAAAAAAA-AAAAA
**
14888895 AAAAAACCTAACCCCCAAAAAAAAAA
1 AAAAAACCTAACCCAAAAAAAAAAAA
14888921 CTAAGAAACC
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
27 14 0.27
29 2 0.04
30 8 0.16
31 8 0.16
32 19 0.37
ACGTcount: A:0.74, C:0.20, G:0.01, T:0.05
Consensus pattern (29 bp):
AAAAAACCTAACCCAAAAAAAAAAAAAAA
Found at i:14889212 original size:13 final size:13
Alignment explanation
Indices: 14889194--14889234 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
14889184 TTCTTTCGAA
14889194 TTTTTTTTCTTTC
1 TTTTTTTTCTTTC
* *
14889207 TTTTTTTT-GTTG
1 TTTTTTTTCTTTC
14889219 TTTTTTTTCTTTC
1 TTTTTTTTCTTTC
14889232 TTT
1 TTT
14889235 ATATATACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (13 bp):
TTTTTTTTCTTTC
Found at i:14889213 original size:16 final size:16
Alignment explanation
Indices: 14889167--14889233 Score: 50
Period size: 16 Copynumber: 4.2 Consensus size: 16
14889157 AAAGGTTGCA
*
14889167 TCTT-TTTCTTTTTTC
1 TCTTCTTTCTTTTTTT
**
14889182 TCTTCTTTCGAATTTTT
1 TCTTCTTTC-TTTTTTT
14889199 T-TTCTTTCTTTTTTT
1 TCTTCTTTCTTTTTTT
* *
14889214 TGTTGTTT-TTTTTCTT
1 TCTTCTTTCTTTTT-TT
14889230 TCTT
1 TCTT
14889234 TATATATACA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
15 15 0.37
16 21 0.51
17 5 0.12
ACGTcount: A:0.03, C:0.15, G:0.04, T:0.78
Consensus pattern (16 bp):
TCTTCTTTCTTTTTTT
Found at i:14892966 original size:3 final size:3
Alignment explanation
Indices: 14892958--14892994 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
14892948 CTCAATTGAC
14892958 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14892995 AAAACATGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14894188 original size:13 final size:13
Alignment explanation
Indices: 14894164--14894214 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
14894154 TTTGGCAATA
*
14894164 CTTTTAAAAAGTG
1 CTTTTGAAAAGTG
* *
14894177 CTGTTGAAAAGTA
1 CTTTTGAAAAGTG
* *
14894190 TTTTTGAGAAGTG
1 CTTTTGAAAAGTG
14894203 CTTTTGAAAAGT
1 CTTTTGAAAAGT
14894215 TTAATTTAAA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:14897964 original size:3 final size:3
Alignment explanation
Indices: 14897952--14897984 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
14897942 AATAATAAGA
14897952 TAT TAGT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TA
14897985 ATTGGAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:14901899 original size:43 final size:44
Alignment explanation
Indices: 14901838--14901926 Score: 171
Period size: 43 Copynumber: 2.0 Consensus size: 44
14901828 AACTGCAGAC
14901838 AACCAACATGGTCCATTTTAAAGT-AATATTACCAGAAAGATGG
1 AACCAACATGGTCCATTTTAAAGTAAATATTACCAGAAAGATGG
14901881 AACCAACATGGTCCATTTTAAAGTAAATATTACCAGAAAGATGG
1 AACCAACATGGTCCATTTTAAAGTAAATATTACCAGAAAGATGG
14901925 AA
1 AA
14901927 TTCAATCTGA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 24 0.53
44 21 0.47
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.25
Consensus pattern (44 bp):
AACCAACATGGTCCATTTTAAAGTAAATATTACCAGAAAGATGG
Found at i:14904873 original size:31 final size:31
Alignment explanation
Indices: 14904837--14904900 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
14904827 AGCATAGCTG
14904837 CCAGCTAACAGGCTAAAAGCCTTTCAGTCTT
1 CCAGCTAACAGGCTAAAAGCCTTTCAGTCTT
*
14904868 CCAGCTAACAGGCTAAAAGCCTTTCAGTTTT
1 CCAGCTAACAGGCTAAAAGCCTTTCAGTCTT
14904899 CC
1 CC
14904901 TTCTTTTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (31 bp):
CCAGCTAACAGGCTAAAAGCCTTTCAGTCTT
Found at i:14906411 original size:27 final size:27
Alignment explanation
Indices: 14906373--14906428 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
14906363 CAGGCGTGTG
*
14906373 AGCCCAATTTGTTTGAAATGTTCTGTA
1 AGCCAAATTTGTTTGAAATGTTCTGTA
14906400 AGCCAAATTTGTTTGAAATGTTCTGTA
1 AGCCAAATTTGTTTGAAATGTTCTGTA
14906427 AG
1 AG
14906429 GTTGCACAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (27 bp):
AGCCAAATTTGTTTGAAATGTTCTGTA
Found at i:14906836 original size:38 final size:39
Alignment explanation
Indices: 14906744--14906838 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
14906734 ACGGTACCTT
* *
14906744 ATGGCGTGTAGGGTTGGATGGGTTGATTATATCCCCATAC
1 ATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCA-AC
* * * *
14906784 TTGGTGTGCAGGGTTGGGTGGGTCGATTCTATCCCC-AC
1 ATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCAAC
*
14906822 ATGGTGTGTTGGGTTGG
1 ATGGTGTGTAGGGTTGG
14906839 TCGGAAATGG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
38 16 0.35
40 30 0.65
ACGTcount: A:0.14, C:0.15, G:0.38, T:0.34
Consensus pattern (39 bp):
ATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCAAC
Found at i:14908796 original size:53 final size:53
Alignment explanation
Indices: 14908715--14908865 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
14908705 CTTACACGGT
* *
14908715 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
14908770 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
14908823 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
14908866 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:14916309 original size:53 final size:53
Alignment explanation
Indices: 14916228--14916378 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
14916218 CTTACACGGT
* *
14916228 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
14916283 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
14916336 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
14916379 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:14923045 original size:2 final size:2
Alignment explanation
Indices: 14923003--14923037 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
14922993 GTATTTTCAT
*
14923003 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14923038 GTTATATAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14923311 original size:24 final size:23
Alignment explanation
Indices: 14923279--14923323 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 23
14923269 TACTACGTAC
*
14923279 ACATATTATTATTTTTTATATATAT
1 ACATATTA-TA-TGTTTATATATAT
14923304 ACAT-TTATATGTTTATATAT
1 ACATATTATATGTTTATATAT
14923324 CGTTATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 10 0.53
23 2 0.11
24 3 0.16
25 4 0.21
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (23 bp):
ACATATTATATGTTTATATATAT
Found at i:14931133 original size:28 final size:28
Alignment explanation
Indices: 14931080--14931163 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
14931070 CACTTTGTGC
*
14931080 TATTCTGGTGTGTTTTGGATAGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
* *
14931109 TATTCTGATGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
14931137 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
14931164 CTGGTGTGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 31 0.65
29 17 0.35
ACGTcount: A:0.21, C:0.04, G:0.29, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:14938420 original size:118 final size:118
Alignment explanation
Indices: 14938256--14938472 Score: 389
Period size: 118 Copynumber: 1.8 Consensus size: 118
14938246 ATTATTTATT
*
14938256 TCGGTTAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
1 TCGGCTAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
14938321 AGCACCCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACC
66 AGCACCCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACC
****
14938374 TCGGCTAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
1 TCGGCTAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
14938439 AGCACCCTACCCCGGTTACTCAGTCAGTCACGAT
66 AGCACCCTACCCCGGTTACTCAGTCAGTCACGAT
14938473 CTAAGTTGTA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
118 94 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (118 bp):
TCGGCTAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
AGCACCCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACC
Found at i:14939328 original size:42 final size:42
Alignment explanation
Indices: 14939281--14939373 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
14939271 CTGAAATAAG
* *
14939281 ACTGTTTGGCTGCA-GAGATATGATATTCTGGGCTGGAATAGA
1 ACTGTTTGGCAGCAGGA-ATATGACATTCTGGGCTGGAATAGA
* * *
14939323 ACTGTTTGACAGCAGGAATATGGCATTTTGGGCTGGAATAGA
1 ACTGTTTGGCAGCAGGAATATGACATTCTGGGCTGGAATAGA
14939365 ACTGTTTGG
1 ACTGTTTGG
14939374 TACCATGGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
42 42 0.95
43 2 0.05
ACGTcount: A:0.26, C:0.12, G:0.31, T:0.31
Consensus pattern (42 bp):
ACTGTTTGGCAGCAGGAATATGACATTCTGGGCTGGAATAGA
Found at i:14939372 original size:20 final size:20
Alignment explanation
Indices: 14939309--14939373 Score: 53
Period size: 20 Copynumber: 3.1 Consensus size: 20
14939299 TATGATATTC
14939309 TGGGCTGGAATAGAACTGTT
1 TGGGCTGGAATAGAACTGTT
* * *
14939329 TGACAGCAGGAATATG-GCAT-TT
1 TG--GGCTGGAATA-GAAC-TGTT
14939351 TGGGCTGGAATAGAACTGTT
1 TGGGCTGGAATAGAACTGTT
14939371 TGG
1 TGG
14939374 TACCATGGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
19 2 0.06
20 16 0.48
22 13 0.39
23 2 0.06
ACGTcount: A:0.26, C:0.11, G:0.34, T:0.29
Consensus pattern (20 bp):
TGGGCTGGAATAGAACTGTT
Found at i:14939492 original size:10 final size:10
Alignment explanation
Indices: 14939479--14939560 Score: 59
Period size: 10 Copynumber: 8.4 Consensus size: 10
14939469 AATATTTAAC
14939479 TAAAATAAAA
1 TAAAATAAAA
14939489 TAAAATAAAA
1 TAAAATAAAA
*
14939499 TAATAA-ATAA
1 TAA-AATAAAA
14939509 T-AAAT-AAA
1 TAAAATAAAA
*
14939517 TAATAA-ATAA
1 TAA-AATAAAA
*
14939527 TAAAAGAAAA
1 TAAAATAAAA
14939537 T-AAA-AAAA
1 TAAAATAAAA
14939545 TAAAAATAAAAA
1 T-AAAAT-AAAA
14939557 TAAA
1 TAAA
14939561 GATTGGGTTG
Statistics
Matches: 58, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
8 10 0.17
9 7 0.12
10 31 0.53
11 5 0.09
12 5 0.09
ACGTcount: A:0.78, C:0.00, G:0.01, T:0.21
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:14939503 original size:18 final size:18
Alignment explanation
Indices: 14939482--14939555 Score: 71
Period size: 18 Copynumber: 3.9 Consensus size: 18
14939472 ATTTAACTAA
14939482 AATAAAATAAAATAAAAT
1 AATAAAATAAAATAAAAT
14939500 AAT-AAATAATAA-ATAAAT
1 AATAAAATAA-AATA-AAAT
*
14939518 AATAAATAATAAAAGAAAAT
1 AAT-AA-AATAAAATAAAAT
*
14939538 AAAAAAATAAAAATAAAA
1 AATAAAAT-AAAATAAAA
14939556 ATAAAGATTG
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
17 7 0.15
18 15 0.32
19 10 0.21
20 9 0.19
21 6 0.13
ACGTcount: A:0.78, C:0.00, G:0.01, T:0.20
Consensus pattern (18 bp):
AATAAAATAAAATAAAAT
Found at i:14939508 original size:7 final size:6
Alignment explanation
Indices: 14939480--14939560 Score: 73
Period size: 7 Copynumber: 13.3 Consensus size: 6
14939470 ATATTTAACT
14939480 AAAAT- AAAAT- AAAAT- AAAATA ATAAATA ATAAATA AATAATA AATAATA
1 AAAATA AAAATA AAAATA AAAATA A-AAATA A-AAATA AA-AATA AA-AATA
14939529 AAAGA-A AATAA-A AAAATA AAAATA AAAATA AA
1 AAA-ATA AA-AATA AAAATA AAAATA AAAATA AA
14939561 GATTGGGTTG
Statistics
Matches: 70, Mismatches: 0, Indels: 11
0.86 0.00 0.14
Matches are distributed among these distances:
5 17 0.24
6 25 0.36
7 28 0.40
ACGTcount: A:0.79, C:0.00, G:0.01, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:14939515 original size:14 final size:13
Alignment explanation
Indices: 14939490--14939560 Score: 71
Period size: 12 Copynumber: 5.6 Consensus size: 13
14939480 AAAATAAAAT
14939490 AAAATAAAATAATA
1 AAAAT-AAATAATA
14939504 AATAATAAAT-A-A
1 AA-AATAAATAATA
*
14939516 ATAATAAATAATA
1 AAAATAAATAATA
14939529 AAAGA-AAATAA-A
1 AAA-ATAAATAATA
14939541 AAAATAAA-AATA
1 AAAATAAATAATA
14939553 AAAATAAA
1 AAAATAAA
14939561 GATTGGGTTG
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
11 10 0.20
12 19 0.39
13 10 0.20
14 7 0.14
15 3 0.06
ACGTcount: A:0.79, C:0.00, G:0.01, T:0.20
Consensus pattern (13 bp):
AAAATAAATAATA
Found at i:14943303 original size:20 final size:20
Alignment explanation
Indices: 14943265--14943312 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
14943255 TAAATTCTAA
* **
14943265 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
14943285 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
14943305 AAA-ATAAA
1 AAAGATAAA
14943313 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:14949578 original size:17 final size:17
Alignment explanation
Indices: 14949558--14949594 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
14949548 TTCATTAAAA
14949558 TTTTAAGATTCAATTGT
1 TTTTAAGATTCAATTGT
*
14949575 TTTTAAGATTCATTTGT
1 TTTTAAGATTCAATTGT
14949592 TTT
1 TTT
14949595 CCTTTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.11, T:0.59
Consensus pattern (17 bp):
TTTTAAGATTCAATTGT
Found at i:14950676 original size:97 final size:98
Alignment explanation
Indices: 14950508--14950702 Score: 311
Period size: 97 Copynumber: 2.0 Consensus size: 98
14950498 TAATCTGAAA
* * *
14950508 GAAGCTCTGTTGTACGCAAGTGAAAATTAACTCTTTTTCTAGTTAGGCAATTTTTCAATTTAATC
1 GAAGCTCTGTTGTACGAAAGTGAAAATTAACTCTTTTTCCAGTTAGGCAATTTTTCAATTCAATC
** * *
14950573 TTGATTCTAATCTCGATTCTAA-CCTTTTTTTC
66 CCGATTCTAATCTCGATTCAAACCCTTTCTTTC
*
14950605 GAAGCTCTGTTGTACGAAAGTGAAAATTAACTTTTTTTCCAGTTAGGCAATTTTTCAATTCAATC
1 GAAGCTCTGTTGTACGAAAGTGAAAATTAACTCTTTTTCCAGTTAGGCAATTTTTCAATTCAATC
14950670 CCGATTCTAATCTCGATTCAAACCCTTTCTTTC
66 CCGATTCTAATCTCGATTCAAACCCTTTCTTTC
14950703 AACTTGTGAC
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
97 80 0.90
98 9 0.10
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.42
Consensus pattern (98 bp):
GAAGCTCTGTTGTACGAAAGTGAAAATTAACTCTTTTTCCAGTTAGGCAATTTTTCAATTCAATC
CCGATTCTAATCTCGATTCAAACCCTTTCTTTC
Found at i:14951816 original size:20 final size:22
Alignment explanation
Indices: 14951778--14951820 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
14951768 ATACATGCAT
14951778 ATATATAAATAACAGTATTAGA
1 ATATATAAATAACAGTATTAGA
*
14951800 ATATAT-AATATCA-TATTAGA
1 ATATATAAATAACAGTATTAGA
14951820 A
1 A
14951821 ACACACATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 6 0.30
22 6 0.30
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (22 bp):
ATATATAAATAACAGTATTAGA
Found at i:14952065 original size:13 final size:14
Alignment explanation
Indices: 14952047--14952077 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
14952037 ATGTATGAAT
14952047 ATATACATATA-TA
1 ATATACATATATTA
14952060 ATATACATATATTA
1 ATATACATATATTA
14952074 ATAT
1 ATAT
14952078 TGATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:14952157 original size:23 final size:23
Alignment explanation
Indices: 14952113--14952158 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
14952103 AACAACCATT
14952113 AATAATAATAATACTTAAAAAAA
1 AATAATAATAATACTTAAAAAAA
*
14952136 AATAATTAAT-ATA-TTAATAAAA
1 AATAA-TAATAATACTTAAAAAAA
14952158 A
1 A
14952159 TAACAGTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 9 0.43
23 8 0.38
24 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
AATAATAATAATACTTAAAAAAA
Found at i:14953248 original size:22 final size:22
Alignment explanation
Indices: 14953209--14953279 Score: 99
Period size: 22 Copynumber: 3.2 Consensus size: 22
14953199 TACGAGGACT
* *
14953209 GTGGCGGTAT-GGGATTGTTGTG
1 GTGG-GGTATGGGGCTTGTTGTA
*
14953231 GTGGGGTATGGGGCTTGTGGTA
1 GTGGGGTATGGGGCTTGTTGTA
14953253 GTGGGGTATGGGGCTTGTTGTA
1 GTGGGGTATGGGGCTTGTTGTA
14953275 GTGGG
1 GTGGG
14953280 TCAGTTAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.11
22 39 0.89
ACGTcount: A:0.08, C:0.04, G:0.54, T:0.34
Consensus pattern (22 bp):
GTGGGGTATGGGGCTTGTTGTA
Found at i:14953898 original size:19 final size:19
Alignment explanation
Indices: 14953870--14953908 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
14953860 AGAGTGAAAG
14953870 AAACGAG-AAACGGGCCAA
1 AAACGAGAAAACGGGCCAA
*
14953888 AAACGGAGAAAATGGGCCAA
1 AAAC-GAGAAAACGGGCCAA
14953908 A
1 A
14953909 GTACGAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.51, C:0.18, G:0.28, T:0.03
Consensus pattern (19 bp):
AAACGAGAAAACGGGCCAA
Found at i:14955860 original size:20 final size:20
Alignment explanation
Indices: 14955835--14955875 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14955825 AATACAGGAG
14955835 CCCAGTATCCAATCAAATTT
1 CCCAGTATCCAATCAAATTT
14955855 CCCAGTATCCAATCAAATTT
1 CCCAGTATCCAATCAAATTT
14955875 C
1 C
14955876 ATGTATTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.32, G:0.05, T:0.29
Consensus pattern (20 bp):
CCCAGTATCCAATCAAATTT
Found at i:14961175 original size:31 final size:32
Alignment explanation
Indices: 14961130--14961207 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 32
14961120 ACACATATAT
*
14961130 ATAT-TAAATAAAATAATAAAAT-AATAATAA
1 ATATCTAATTAAAATAATAAAATAAATAATAA
* *
14961160 ATATCTTATTAAAAT-ATTAAATAAATAATAA
1 ATATCTAATTAAAATAATAAAATAAATAATAA
*
14961191 TTATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
14961208 TATAAAATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
30 14 0.35
31 26 0.65
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (32 bp):
ATATCTAATTAAAATAATAAAATAAATAATAA
Found at i:14961193 original size:23 final size:23
Alignment explanation
Indices: 14961130--14961193 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 23
14961120 ACACATATAT
14961130 ATATTAAAT-AA-AATAA-TAAA
1 ATATTAAATAAATAATAATTAAA
* * *
14961150 ATAAT-AATAAATATCTTATTAAA
1 ATATTAAATAAATA-ATAATTAAA
14961173 ATATTAAATAAATAATAATTA
1 ATATTAAATAAATAATAATTA
14961194 TCTAATTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
19 3 0.09
20 6 0.18
21 1 0.03
22 2 0.06
23 13 0.39
24 8 0.24
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
ATATTAAATAAATAATAATTAAA
Found at i:14963562 original size:28 final size:28
Alignment explanation
Indices: 14963531--14963591 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
14963521 TAAAATAAAT
14963531 AAATAAAAACATCTCACATATTTAAAAG
1 AAATAAAAACATCTCACATATTTAAAAG
14963559 AAATAAAAACATCTCACATATTTAAAAG
1 AAATAAAAACATCTCACATATTTAAAAG
14963587 AAATA
1 AAATA
14963592 TACAATAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.25
Consensus pattern (28 bp):
AAATAAAAACATCTCACATATTTAAAAG
Found at i:14964449 original size:18 final size:18
Alignment explanation
Indices: 14964428--14964462 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14964418 AAATAGCGGT
*
14964428 TATAGTAATATTATATAC
1 TATAGCAATATTATATAC
*
14964446 TATAGCGATATTATATA
1 TATAGCAATATTATATA
14964463 TAACGTTAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (18 bp):
TATAGCAATATTATATAC
Found at i:14973411 original size:17 final size:16
Alignment explanation
Indices: 14973397--14973445 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
14973387 AGAAAATAAC
14973397 AATAAACATAAAATAGA
1 AATAAA-ATAAAATAGA
14973414 AATAAAACTAAAA-AGAA
1 AATAAAA-TAAAATAG-A
14973431 AATAAAAATAAAATA
1 AAT-AAAATAAAATA
14973446 AATAGACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 3 0.11
17 20 0.71
18 5 0.18
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (16 bp):
AATAAAATAAAATAGA
Found at i:14973416 original size:6 final size:5
Alignment explanation
Indices: 14973389--14973447 Score: 55
Period size: 5 Copynumber: 10.6 Consensus size: 5
14973379 GAAGTCTAAG
*
14973389 AAAAT AACAAT AAACAT AAAAT AGAAAT AAAACT AAAAAG AAAAT AAAAAT
1 AAAAT AA-AAT AAA-AT AAAAT A-AAAT AAAA-T -AAAAT AAAAT -AAAAT
14973440 AAAAT AAA
1 AAAAT AAA
14973448 TAGACTCAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
5 21 0.46
6 21 0.46
7 4 0.09
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:14973446 original size:11 final size:11
Alignment explanation
Indices: 14973389--14973447 Score: 73
Period size: 11 Copynumber: 5.2 Consensus size: 11
14973379 GAAGTCTAAG
14973389 AAAATAACAATA
1 AAAATAA-AATA
*
14973401 AACATAAAATA
1 AAAATAAAATA
*
14973412 GAAATAAAACTA
1 AAAATAAAA-TA
*
14973424 AAAAGAAAATA
1 AAAATAAAATA
14973435 AAAATAAAATA
1 AAAATAAAATA
14973446 AA
1 AA
14973448 TAGACTCAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
11 25 0.62
12 15 0.38
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.15
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:14975104 original size:11 final size:10
Alignment explanation
Indices: 14975089--14975162 Score: 66
Period size: 11 Copynumber: 7.3 Consensus size: 10
14975079 TCAAATAACA
14975089 AATAAT-AAT
1 AATAATAAAT
*
14975098 AA-AATAAAC
1 AATAATAAAT
14975107 AATAAATAAAT
1 AAT-AATAAAT
14975118 AACATAATATAAT
1 -A-ATAATA-AAT
14975131 -ATAAT-AAT
1 AATAATAAAT
14975139 AATAATAAAT
1 AATAATAAAT
14975149 AAATAATAAAT
1 -AATAATAAAT
14975160 AAT
1 AAT
14975163 TAAATAAGGA
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
8 6 0.11
9 11 0.20
10 11 0.20
11 16 0.30
12 5 0.09
13 5 0.09
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (10 bp):
AATAATAAAT
Found at i:14975118 original size:8 final size:8
Alignment explanation
Indices: 14975107--14975169 Score: 55
Period size: 8 Copynumber: 8.1 Consensus size: 8
14975097 TAAAATAAAC
14975107 AATAAATA
1 AATAAATA
14975115 AATAACAT-
1 AATAA-ATA
14975123 AATATAATA
1 AATA-AATA
14975132 TAAT-AAT-
1 -AATAAATA
14975139 AAT-AATA
1 AATAAATA
14975146 AATAAAT-
1 AATAAATA
14975153 AATAAATA
1 AATAAATA
*
14975161 ATTAAATA
1 AATAAATA
14975169 A
1 A
14975170 GGAAAATGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
6 6 0.13
7 10 0.21
8 25 0.53
9 3 0.06
10 3 0.06
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (8 bp):
AATAAATA
Found at i:14975153 original size:35 final size:33
Alignment explanation
Indices: 14975081--14975162 Score: 103
Period size: 35 Copynumber: 2.4 Consensus size: 33
14975071 AAGACAATTC
14975081 AAATAACAAATAATAATAAAATAAACAATAAAT
1 AAATAACAAATAATAATAAAATAAACAATAAAT
* *
14975114 AAATAACATAAT-ATAATATAATAATAATAATAAAT
1 AAATAACA-AATAATAATAAAAT-A-AACAATAAAT
*
14975149 AAATAATAAATAAT
1 AAATAACAAATAAT
14975163 TAAATAAGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 17 0.40
34 7 0.17
35 18 0.43
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.27
Consensus pattern (33 bp):
AAATAACAAATAATAATAAAATAAACAATAAAT
Found at i:14976471 original size:2 final size:2
Alignment explanation
Indices: 14976464--14976498 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14976454 CTACTACTAA
14976464 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14976499 CGACTTTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14978354 original size:17 final size:18
Alignment explanation
Indices: 14978309--14978361 Score: 56
Period size: 17 Copynumber: 3.0 Consensus size: 18
14978299 TTTACCCAAT
* *
14978309 AAATTCTTTTAGTTCATA
1 AAATTCTTCTAATTCATA
*
14978327 AAATTC-ACTAATTCA-A
1 AAATTCTTCTAATTCATA
14978343 AAATTCTTCTAATGTCATA
1 AAATTCTTCTAAT-TCATA
14978362 CTTGTCTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
16 7 0.25
17 11 0.39
18 9 0.32
19 1 0.04
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.42
Consensus pattern (18 bp):
AAATTCTTCTAATTCATA
Found at i:14989175 original size:21 final size:21
Alignment explanation
Indices: 14989135--14989196 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
14989125 CGAATACACC
*
14989135 AACAGAAGCT-CGAA-AGCTG
1 AACAGAAGCTCCTAAGAGCTG
14989154 AACAGAAGCTCCTAAGAGCTG
1 AACAGAAGCTCCTAAGAGCTG
* * *
14989175 AACAAAAGCTCGTAAGTGCTG
1 AACAGAAGCTCCTAAGAGCTG
14989196 A
1 A
14989197 TCCACTCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.27
20 3 0.08
21 24 0.65
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCCTAAGAGCTG
Found at i:14990904 original size:11 final size:11
Alignment explanation
Indices: 14990874--14990904 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
14990864 TGTATAAAAC
14990874 TTATTTTATTG
1 TTATTTTATTG
14990885 TTAATTTTATTG
1 TT-ATTTTATTG
14990897 TTATTTTA
1 TTATTTTA
14990905 AAGGTATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (11 bp):
TTATTTTATTG
Found at i:14990917 original size:30 final size:30
Alignment explanation
Indices: 14990882--14990944 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
14990872 ACTTATTTTA
* *
14990882 TTGTTAATTTTATTGTTATTTTAAAGGTAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
* *
14990912 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
14990942 TTG
1 TTG
14990945 CTTATTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.02, G:0.16, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGGCAT
Found at i:14998811 original size:15 final size:15
Alignment explanation
Indices: 14998791--14998836 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
14998781 ACAAAATAAT
14998791 AACATAAGTGATTAA
1 AACATAAGTGATTAA
* *
14998806 AACATAAAT-TTTAA
1 AACATAAGTGATTAA
*
14998820 AACATAAGTGACTAA
1 AACATAAGTGATTAA
14998835 AA
1 AA
14998837 TATAGGCAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.26
Consensus pattern (15 bp):
AACATAAGTGATTAA
Found at i:15010336 original size:27 final size:29
Alignment explanation
Indices: 15010275--15010337 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 29
15010265 ATATATAACA
*
15010275 TATAAA-AAAATACATATTATTGCATATT
1 TATAAATAAAATACACATTATTGCATATT
* *
15010303 AAT-AATAAAATA-ACATTATTG-ATTTT
1 TATAAATAAAATACACATTATTGCATATT
15010329 TATAAATAA
1 TATAAATAA
15010338 TTTTAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 6 0.21
27 15 0.52
28 8 0.28
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (29 bp):
TATAAATAAAATACACATTATTGCATATT
Found at i:15011031 original size:27 final size:26
Alignment explanation
Indices: 15010971--15011053 Score: 96
Period size: 26 Copynumber: 3.1 Consensus size: 26
15010961 TCAACTTTTA
* * *
15010971 ATTAA-TTTTTTAAGTTTAAAAAAAG
1 ATTAACTTTTTTAATTTTAAAATAAT
15010996 ATTAACTTTTTTAATTTTAAAATAAT
1 ATTAACTTTTTTAATTTTAAAATAAT
*
15011022 TTTAATCTTTTTTAATTATTTAAAATAAT
1 ATTAA-CTTTTTTAA-T-TTTAAAATAAT
15011051 ATT
1 ATT
15011054 TTTTAAAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 5 0.10
26 21 0.43
27 9 0.18
28 1 0.02
29 13 0.27
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (26 bp):
ATTAACTTTTTTAATTTTAAAATAAT
Found at i:15018225 original size:64 final size:65
Alignment explanation
Indices: 15018155--15018279 Score: 216
Period size: 64 Copynumber: 1.9 Consensus size: 65
15018145 TTTTAATTAC
* *
15018155 AAAATAATGAAAACTTAATTAATTTAAAGCTGCATTAAATTATTAT-AAAAAATTAAATTACTAA
1 AAAATAATGAAAACTTAATTAATTTAAAACTACATTAAATTATTATAAAAAAATTAAATTACTAA
*
15018219 AAAATAATGAAAATTTAATTAATTTAAAACTACATTAAATTATTATAAAAAAATTAAATTA
1 AAAATAATGAAAACTTAATTAATTTAAAACTACATTAAATTATTATAAAAAAATTAAATTA
15018280 TGTTTTATTT
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
64 43 0.75
65 14 0.25
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (65 bp):
AAAATAATGAAAACTTAATTAATTTAAAACTACATTAAATTATTATAAAAAAATTAAATTACTAA
Found at i:15023227 original size:12 final size:12
Alignment explanation
Indices: 15023210--15023248 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
15023200 CAGCCCGCCC
15023210 ATATTAATTTTT
1 ATATTAATTTTT
15023222 ATATTAATTTTT
1 ATATTAATTTTT
*
15023234 ATA-TAATTTTA
1 ATATTAATTTTT
15023245 ATAT
1 ATAT
15023249 ATATATAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:15023240 original size:11 final size:11
Alignment explanation
Indices: 15023214--15023249 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
15023204 CCGCCCATAT
15023214 TAATTTTTATA
1 TAATTTTTATA
15023225 TTAATTTTTATA
1 -TAATTTTTATA
*
15023237 TAATTTTAATA
1 TAATTTTTATA
15023248 TA
1 TA
15023250 TATATAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:15035425 original size:29 final size:28
Alignment explanation
Indices: 15035393--15035455 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
15035383 ATTTATTTTG
15035393 TTATTCTAATACTATTATTAT-TTATCTAT
1 TTATT-TAATACTATTATTATATT-TCTAT
**
15035422 TTATATTTCTACTATTATTATATTTCTAT
1 TTAT-TTAATACTATTATTATATTTCTAT
15035451 TTATT
1 TTATT
15035456 ATATTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 1 0.03
29 26 0.87
30 3 0.10
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (28 bp):
TTATTTAATACTATTATTATATTTCTAT
Found at i:15035451 original size:43 final size:43
Alignment explanation
Indices: 15035362--15035522 Score: 123
Period size: 43 Copynumber: 3.7 Consensus size: 43
15035352 TTATTGTTAT
* ** * * * *
15035362 TATTATTATGTTTCTATTTATATTTATTTTGTTATTCTAATAC
1 TATTATTATATTTCTATTTATATTTATACTATTATTATATTTC
*
15035405 TATTATTAT-TTATCTATTTATATTTCTACTATTATTATATTTC
1 TATTATTATATT-TCTATTTATATTTATACTATTATTATATTTC
* * *
15035448 TATTTATTATATTTTTATTTCTATTTATATACTAATATTAT-TTTC
1 TA-TTATTATATTTCTATTTATA-TT-TATACTATTATTATATTTC
* *
15035493 -ATTATTAT-TCTTCTTATATATATTTTTACT
1 TATTATTATAT-TTC-TATTTATATTTATACT
15035523 TTTGTTATTA
Statistics
Matches: 96, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
42 8 0.08
43 46 0.48
44 22 0.23
45 8 0.08
46 12 0.12
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.63
Consensus pattern (43 bp):
TATTATTATATTTCTATTTATATTTATACTATTATTATATTTC
Found at i:15035454 original size:15 final size:15
Alignment explanation
Indices: 15035422--15035467 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
15035412 ATTTATCTAT
15035422 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
15035439 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
15035454 TTATATTTTTATTT
1 TTATATTTCTATTT
15035468 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:15037844 original size:32 final size:32
Alignment explanation
Indices: 15037807--15037868 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
15037797 AGTTTTTGGT
15037807 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
15037839 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
15037869 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:15038527 original size:30 final size:30
Alignment explanation
Indices: 15038492--15038552 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
15038482 TCTAAACATA
15038492 AATCTCATCATAAATTTTATTCACTACTAC
1 AATCTCATCATAAATTTTATTCACTACTAC
15038522 AATCTCATCATAAATTTTATTCACTACTAC
1 AATCTCATCATAAATTTTATTCACTACTAC
15038552 A
1 A
15038553 GTATTCAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.39
Consensus pattern (30 bp):
AATCTCATCATAAATTTTATTCACTACTAC
Found at i:15043785 original size:26 final size:23
Alignment explanation
Indices: 15043756--15043804 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
15043746 GGGTGAAAAC
15043756 AAAATTATATAACAAATATATTAAATA
1 AAAATT-TAT-ACAAA-AT-TTAAATA
15043783 AAAATTTATACAAAATTTAAAT
1 AAAATTTATACAAAATTTAAAT
15043805 GAGGCTTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 6 0.27
24 2 0.09
25 5 0.23
26 3 0.14
27 6 0.27
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAATTTATACAAAATTTAAATA
Found at i:15044584 original size:31 final size:30
Alignment explanation
Indices: 15044547--15044606 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
15044537 GTCATTTAGT
*
15044547 TATTCAAAAGTTTTCATTTAAGTTATTGAAC
1 TATTCAAAA-TTTTCATTTAAGTTACTGAAC
* *
15044578 TATTCAAAATTTTTATTTATGTTACTGAA
1 TATTCAAAATTTTCATTTAAGTTACTGAA
15044607 TTGTTAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.48
Consensus pattern (30 bp):
TATTCAAAATTTTCATTTAAGTTACTGAAC
Found at i:15045562 original size:20 final size:20
Alignment explanation
Indices: 15045539--15045583 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
15045529 TTTTTTAAAA
15045539 TTTTTATA-AATTTTAGA-AT
1 TTTTTATATAATTTTA-ACAT
15045558 TTTTTATATAATTTTAACAT
1 TTTTTATATAATTTTAACAT
15045578 TTTTTA
1 TTTTTA
15045584 ATCATTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTTTATATAATTTTAACAT
Found at i:15059188 original size:5 final size:5
Alignment explanation
Indices: 15059178--15059203 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
15059168 TAATCCAAGT
15059178 ACCCA ACCCA ACCCA ACCCA ACCCA A
1 ACCCA ACCCA ACCCA ACCCA ACCCA A
15059204 TCATAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.58, G:0.00, T:0.00
Consensus pattern (5 bp):
ACCCA
Found at i:15059270 original size:7 final size:6
Alignment explanation
Indices: 15059229--15059269 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
15059219 ATAATTTAAT
*
15059229 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
15059270 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:15059270 original size:20 final size:20
Alignment explanation
Indices: 15059232--15059271 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15059222 ATTTAATAAA
**
15059232 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
15059252 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
15059272 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:15059303 original size:9 final size:9
Alignment explanation
Indices: 15059289--15059356 Score: 66
Period size: 9 Copynumber: 7.6 Consensus size: 9
15059279 TTTATACAAA
15059289 TAATTCGGT
1 TAATTCGGT
15059298 TAATTCGGT
1 TAATTCGGT
* *
15059307 TAATTTGGG
1 TAATTCGGT
15059316 TAATTCAGG-
1 TAATTC-GGT
*
15059325 TAATTAGGT
1 TAATTCGGT
**
15059334 TAATTCAAT
1 TAATTCGGT
*
15059343 TAATTCGAT
1 TAATTCGGT
15059352 TAATT
1 TAATT
15059357 TTATACTTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
8 2 0.04
9 45 0.92
10 2 0.04
ACGTcount: A:0.31, C:0.07, G:0.18, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:15064690 original size:110 final size:112
Alignment explanation
Indices: 15064508--15064729 Score: 335
Period size: 110 Copynumber: 2.0 Consensus size: 112
15064498 CTAAAACTGC
* * *
15064508 AATTGGATTTTCCTTTTTAATATATTTCAGATCTAATATTTAGAAGTTCATAGTTTTGATTTTGA
1 AATTGGATTTTCCTTTTTAATATATTCCAGATCTAATATTAAAAAGTTCATAGTTTTGATTTTGA
*
15064573 A-TTTTTTTTTCAAAAAATTATT-TT-TTTATTTTAAAATACAAAACT
66 AGATTTTTTTTC-AAAAATTATTATTATTTATTTTAAAATACAAAACT
* *
15064618 AATTGGATTTT-CTATTTTTATATATTCCAGATCTAATATTAAAAAGTTTATAGTTTTGATTTTG
1 AATTGGATTTTCCT-TTTTAATATATTCCAGATCTAATATTAAAAAGTTCATAGTTTTGATTTTG
*
15064682 AAGATTTTTTTTCAAAAATTATTATTATTTATTTTAAAATATAAAACT
65 AAGATTTTTTTTCAAAAATTATTATTATTTATTTTAAAATACAAAACT
15064730 CTTTTGCTTT
Statistics
Matches: 101, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
109 2 0.02
110 68 0.67
111 11 0.11
112 20 0.20
ACGTcount: A:0.35, C:0.06, G:0.07, T:0.51
Consensus pattern (112 bp):
AATTGGATTTTCCTTTTTAATATATTCCAGATCTAATATTAAAAAGTTCATAGTTTTGATTTTGA
AGATTTTTTTTCAAAAATTATTATTATTTATTTTAAAATACAAAACT
Found at i:15064815 original size:20 final size:21
Alignment explanation
Indices: 15064784--15064827 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
15064774 ATTTAAAAAC
*
15064784 TTTTATGATTTTTTTTTAATT
1 TTTTATGATTTTTCTTTAATT
15064805 TTTTATG-TTTTTCTTTAATT
1 TTTTATGATTTTTCTTTAATT
15064825 TTT
1 TTT
15064828 AGTAGCTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (21 bp):
TTTTATGATTTTTCTTTAATT
Found at i:15073049 original size:17 final size:17
Alignment explanation
Indices: 15073015--15073052 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
15073005 CGTGTTTTTT
15073015 AAATTTTTTGAAATATA
1 AAATTTTTTGAAATATA
*
15073032 AAATTATTTTTAAA-ATA
1 AAATT-TTTTGAAATATA
15073049 AAAT
1 AAAT
15073053 AGAAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
AAATTTTTTGAAATATA
Found at i:15073070 original size:24 final size:24
Alignment explanation
Indices: 15073025--15073069 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
15073015 AAATTTTTTG
*
15073025 AAATATAAAATTATTTTTAAAATA
1 AAATAGAAAATTATTTTTAAAATA
15073049 AAATAGAAAA-TATTTTTAAAA
1 AAATAGAAAATTATTTTTAAAA
15073070 ACCAAACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATAGAAAATTATTTTTAAAATA
Found at i:15073430 original size:15 final size:15
Alignment explanation
Indices: 15073412--15073461 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
15073402 TAAAATAATG
15073412 AAATAATAAATTTTC
1 AAATAATAAATTTTC
* *
15073427 AAAT-ATAAAATTATG
1 AAATAAT-AAATTTTC
15073442 AAATAATAAATTTTC
1 AAATAATAAATTTTC
15073457 AAATA
1 AAATA
15073462 TCAAATTTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 2 0.07
15 25 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (15 bp):
AAATAATAAATTTTC
Found at i:15073467 original size:15 final size:14
Alignment explanation
Indices: 15073412--15073469 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 14
15073402 TAAAATAATG
15073412 AAATAATAAATTTTC
1 AAAT-ATAAATTTTC
* *
15073427 AAATATAAAATTATG
1 AAATAT-AAATTTTC
15073442 AAATAATAAATTTTC
1 AAAT-ATAAATTTTC
15073457 AAATATCAAATTT
1 AAATAT-AAATTT
15073470 ACTATTATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
14 4 0.11
15 30 0.83
16 2 0.06
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (14 bp):
AAATATAAATTTTC
Found at i:15073468 original size:30 final size:30
Alignment explanation
Indices: 15073402--15073468 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
15073392 TTAATAAGAT
*
15073402 TAAAATAATGAAATAATAAATTTTCAAATA
1 TAAAATTATGAAATAATAAATTTTCAAATA
15073432 TAAAATTATGAAATAATAAATTTTCAAATA
1 TAAAATTATGAAATAATAAATTTTCAAATA
*
15073462 TCAAATT
1 TAAAATT
15073469 TACTATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.36
Consensus pattern (30 bp):
TAAAATTATGAAATAATAAATTTTCAAATA
Found at i:15074048 original size:37 final size:36
Alignment explanation
Indices: 15073977--15074048 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
15073967 ATTAAAATTC
* * ** *
15073977 GATTTTTTAAAAAAAGTTAAATTGTTAAATTCTAAT
1 GATTTTTAAAAAAAAATTAAATTGCAAAAATCTAAT
15074013 GATTTTTAAAAAAAAATTAAATTGACAAAAATCTAA
1 GATTTTTAAAAAAAAATTAAATTG-CAAAAATCTAA
15074049 GCATCAAGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
36 22 0.73
37 8 0.27
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (36 bp):
GATTTTTAAAAAAAAATTAAATTGCAAAAATCTAAT
Found at i:15075159 original size:2 final size:2
Alignment explanation
Indices: 15075152--15075195 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
15075142 TCCTATGTGA
*
15075152 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15075194 AT
1 AT
15075196 TATTTTAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15078045 original size:2 final size:2
Alignment explanation
Indices: 15078038--15078067 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15078028 CAAGAGGTGT
15078038 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15078068 ATACTAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15082146 original size:29 final size:29
Alignment explanation
Indices: 15082107--15082162 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
15082097 TTTTTAAATT
*
15082107 TAAAAAGTAGAGGGATTAACTTCCTAAAAA
1 TAAAAAGTAGAGGGATTAAATT-CTAAAAA
15082137 TAAAAA-TAGAGGGATTAAATTCTAAA
1 TAAAAAGTAGAGGGATTAAATTCTAAA
15082163 TCTACGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 5 0.20
29 14 0.56
30 6 0.24
ACGTcount: A:0.52, C:0.07, G:0.16, T:0.25
Consensus pattern (29 bp):
TAAAAAGTAGAGGGATTAAATTCTAAAAA
Found at i:15085772 original size:131 final size:128
Alignment explanation
Indices: 15085531--15085863 Score: 420
Period size: 131 Copynumber: 2.6 Consensus size: 128
15085521 AAAAAACCGA
*** * *
15085531 AACCCAGCACAGTAGGGCACGA-TCCCTCGAATTTTTAGACATTGAACATTGCCTTGTTTT--AG
1 AACCCAGCACA-TAGGGCACGATTCCC-CGAATTGCCAAACATCGAACATTGCCTTGTTTTAAAG
** * * * *
15085593 AATTTAGAAAACATGAGTGAAGTTCTAAAGGGATATTCGATTATTTTGATCAAACGGGAAATTGC
64 AATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGC
* *
15085658 AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTTCCTTCGTTTTAAAG
1 AACCCAGCAC-ATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTT-GTTTTAAAG
15085723 AATTTTTAAAGACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTG
64 AATTTTTAAA-ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTG
15085788 C
128 C
* * * * *
15085789 AACCCAACACAATTGGGCACGATTCCCTGAATTGCCAAACATCGTACATTGCCTTTGTTCTAAAG
1 AACCCAGCAC-ATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCC-TTGTTTTAAAG
15085854 AATTTTTAAA
64 AATTTTTAAA
15085864 TGAATAATTA
Statistics
Matches: 178, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
127 41 0.23
128 10 0.06
130 10 0.06
131 115 0.65
132 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.29
Consensus pattern (128 bp):
AACCCAGCACATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTGTTTTAAAGAA
TTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGC
Found at i:15086523 original size:2 final size:2
Alignment explanation
Indices: 15086518--15086542 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15086508 ACACACACAC
15086518 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15086543 AAATTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15089511 original size:46 final size:45
Alignment explanation
Indices: 15089458--15089576 Score: 193
Period size: 46 Copynumber: 2.6 Consensus size: 45
15089448 ACATCTCTCA
*
15089458 CATTAGCCATTTCGCTTTACCACATATCCATCTCATACACGTTTCG
1 CATTAGCCA-TTCGCTTTACCACATATCCATCTCATACACATTTCG
*
15089504 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACATTTCG
1 CATTAGCCATTC-GCTTTACCACATATCCATCTCATACACATTTCG
15089550 CATTAGCCATTCGACTTTACCACATAT
1 CATTAGCCATTCG-CTTTACCACATAT
15089577 ATACACTTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
45 4 0.06
46 64 0.94
ACGTcount: A:0.25, C:0.32, G:0.08, T:0.34
Consensus pattern (45 bp):
CATTAGCCATTCGCTTTACCACATATCCATCTCATACACATTTCG
Found at i:15089619 original size:22 final size:22
Alignment explanation
Indices: 15089593--15089667 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
15089583 TTCCATGTTC
15089593 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
15089615 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
15089639 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
15089662 ATCACA
1 ATCACA
15089668 CATATGTATG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 13 0.33
23 9 0.23
24 10 0.26
25 7 0.18
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:15089621 original size:47 final size:47
Alignment explanation
Indices: 15089590--15089834 Score: 400
Period size: 47 Copynumber: 5.2 Consensus size: 47
15089580 CACTTCCATG
*
15089590 TTCATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
15089637 TTCATCACATTGGCCATTCGGCCTTATCACACATATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
15089684 TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
15089731 TTCATCACATTGGTCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * **
15089778 TTCATCACATTTGCCATTCGGCCTTATCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
15089825 TTCATCACAT
1 TTCATCACAT
15089835 AAAATCCTAA
Statistics
Matches: 184, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 184 1.00
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:15089739 original size:141 final size:140
Alignment explanation
Indices: 15089550--15089834 Score: 410
Period size: 141 Copynumber: 2.0 Consensus size: 140
15089540 ACACATTTCG
* *
15089550 CATTAGCCATTCGACTTTACCACATATATACACTTCCATGTTCATCACATTGGCCATTTGGCCTT
1 CATTAGCCATTCGACCTTACCACATATATACACTTCCA-GTTCATCACATTGGCCATTCGGCCTT
** **
15089615 ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGTATGTT
65 ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATT
15089680 CACATTCATCA
130 CACATTCATCA
* * * * *
15089691 CATTGGCCATTCGACCTTATCACATATATGCATGTTCACA-TTCATCACATTGGTCATTCGGCCT
1 CATTAGCCATTCGACCTTACCACATATATACA-CTTC-CAGTTCATCACATTGGCCATTCGGCCT
* * *
15089755 TATCACATATATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTATCTCATATATACACAT
64 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACAT
15089820 TCACATTCATCA
129 TCACATTCATCA
15089832 CAT
1 CAT
15089835 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
141 123 0.96
142 3 0.02
143 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (140 bp):
CATTAGCCATTCGACCTTACCACATATATACACTTCCAGTTCATCACATTGGCCATTCGGCCTTA
TCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTC
ACATTCATCA
Found at i:15089835 original size:25 final size:25
Alignment explanation
Indices: 15089615--15089835 Score: 87
Period size: 25 Copynumber: 9.3 Consensus size: 25
15089605 ATTTGGCCTT
**
15089615 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
15089640 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
* * **
15089662 ATCACACATATGTATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
15089687 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATGCACATTC-ACATTC
**
15089709 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
** * *
15089734 ATCAC--AT-TGGTCATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
**
15089756 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
15089781 ATCACAT-T-TGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
* *
15089803 ATCTCATATATACACATTCACATTC
1 ATCACATATATGCACATTCACATTC
15089828 ATCACATA
1 ATCACATA
15089836 AAATCCTAAA
Statistics
Matches: 133, Mismatches: 43, Indels: 40
0.62 0.20 0.19
Matches are distributed among these distances:
22 38 0.29
23 24 0.18
24 23 0.17
25 48 0.36
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:15093856 original size:28 final size:28
Alignment explanation
Indices: 15093821--15093889 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
15093811 AAAGAAAGCC
*
15093821 AAAT-TATACATAAATAAATTTTAAAGA
1 AAATATATACATAAATAAATTTAAAAGA
15093848 AAATATATACAT-AATAAATTTAAAAGA
1 AAATATATACATAAATAAATTTAAAAGA
*
15093875 AAATATTTACATAAA
1 AAATATATACATAAA
15093890 ATATTATGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 29 0.76
28 9 0.24
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (28 bp):
AAATATATACATAAATAAATTTAAAAGA
Found at i:15105425 original size:19 final size:17
Alignment explanation
Indices: 15105401--15105437 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
15105391 CAAATTTTAT
15105401 TTTTATAAATAATATAATA
1 TTTTAT-AATAAT-TAATA
15105420 TTTTATAATAATTAATA
1 TTTTATAATAATTAATA
15105437 T
1 T
15105438 CATATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 6 0.33
19 6 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTTATAATAATTAATA
Found at i:15105442 original size:22 final size:20
Alignment explanation
Indices: 15105398--15105437 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
15105388 AATCAAATTT
15105398 TATTTTTATAAATAATATAA
1 TATTTTTATAAATAATATAA
15105418 TA-TTTTAT-AATAAT-TAA
1 TATTTTTATAAATAATATAA
15105435 TAT
1 TAT
15105438 CATATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
17 5 0.26
18 6 0.32
19 6 0.32
20 2 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTTTTATAAATAATATAA
Found at i:15105659 original size:12 final size:13
Alignment explanation
Indices: 15105639--15105682 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
15105629 AATAAAATTG
15105639 TAATATTAAATAA
1 TAATATTAAATAA
*
15105652 -ATTATT-AATAA
1 TAATATTAAATAA
*
15105663 TAATATTAAATAT
1 TAATATTAAATAA
15105676 TAATATT
1 TAATATT
15105683 TTGAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 5 0.19
12 10 0.38
13 11 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TAATATTAAATAA
Found at i:15105712 original size:23 final size:23
Alignment explanation
Indices: 15105640--15105712 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 23
15105630 ATAAAATTGT
* *
15105640 AATATTAAATAAATTATTAATAA
1 AATATTAAATAAAATATTATTAA
*
15105663 TAATATTAAATATTAATATT-TTGAA
1 -AATATTAAATA-AAATATTATT-AA
15105688 AAT-TTAAAATAAAATATTATTAA
1 AATATT-AAATAAAATATTATTAA
15105711 AA
1 AA
15105713 AAATATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
23 12 0.29
24 22 0.54
25 7 0.17
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (23 bp):
AATATTAAATAAAATATTATTAA
Found at i:15115741 original size:44 final size:44
Alignment explanation
Indices: 15115678--15115765 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
15115668 TAGGAGATTA
15115678 ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT
1 ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT
15115722 ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT
1 ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT
15115766 TCTTATGTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.41
Consensus pattern (44 bp):
ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT
Found at i:15117709 original size:19 final size:18
Alignment explanation
Indices: 15117659--15117714 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 18
15117649 TCAACTGCTC
15117659 TTAACAGCTTAACAA-T-A
1 TTAACAGC-TAACAACTAA
15117676 TTCAACAGCTAAACAACTAA
1 TT-AACAGCT-AACAACTAA
*
15117696 TTAACAGACTAACAGCTAA
1 TTAACAG-CTAACAACTAA
15117715 CAATCTAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 3 0.09
18 11 0.33
19 14 0.42
20 5 0.15
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.23
Consensus pattern (18 bp):
TTAACAGCTAACAACTAA
Found at i:15119193 original size:203 final size:203
Alignment explanation
Indices: 15118844--15119226 Score: 712
Period size: 203 Copynumber: 1.9 Consensus size: 203
15118834 CATAAAGTGC
*
15118844 TTTCTTCAGGCGGCACACTAGCTGCTTGCCATCCAAGTCAGTTTGAACATATCTTAGAGGTTGAT
1 TTTCTTCAGGCGGCACACTAGCTGCTTGCCATCCAAGTCAGTTTGAACATATCCTAGAGGTTGAT
*
15118909 GCATAAACACCTCAGTGTCTATATCTCCATTCAAGAAGGCATTATTCACATCTACCTGACGTAAG
66 GCATAAACACCTCAGTGTCTATATCTCCATTCAAGAAGGCATTATTCACATCTACCAGACGTAAG
15118974 GGCCATCCTCTTGAAACCGCAACAGATAGAATAACACGAATAGTTGCCGGCCTGGTTTGACAAAC
131 GGCCATCCTCTTGAAACCGCAACAGATAGAATAACACGAATAGTTGCCGGCCTGGTTTGACAAAC
15119039 TGAAATGT
196 TGAAATGT
*
15119047 TTTCTTCAGGCGGCACACTAGCTGCTTGCCATCCAAGTCAGTTTGAACATATCCTGGAGGTTGAT
1 TTTCTTCAGGCGGCACACTAGCTGCTTGCCATCCAAGTCAGTTTGAACATATCCTAGAGGTTGAT
*
15119112 GCATAAACACCTCAGTGTCTATATCTCCATTCAAGAAGGCATTGTTCACATCTACCAGACGTAAG
66 GCATAAACACCTCAGTGTCTATATCTCCATTCAAGAAGGCATTATTCACATCTACCAGACGTAAG
* *
15119177 GGTCATCTTCTTGAAACCGCAACAGATAGAATAACACGAATAGTTGCCGG
131 GGCCATCCTCTTGAAACCGCAACAGATAGAATAACACGAATAGTTGCCGG
15119227 TTTAACGACG
Statistics
Matches: 174, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
203 174 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (203 bp):
TTTCTTCAGGCGGCACACTAGCTGCTTGCCATCCAAGTCAGTTTGAACATATCCTAGAGGTTGAT
GCATAAACACCTCAGTGTCTATATCTCCATTCAAGAAGGCATTATTCACATCTACCAGACGTAAG
GGCCATCCTCTTGAAACCGCAACAGATAGAATAACACGAATAGTTGCCGGCCTGGTTTGACAAAC
TGAAATGT
Done.