Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 56 of 345
Found at i:15784794 original size:88 final size:87
Alignment explanation
Indices: 15784639--15784800 Score: 252
Period size: 88 Copynumber: 1.9 Consensus size: 87
15784629 AATTTTCAGC
* * **
15784639 CTATTACCCTACTACTTAGGGGGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGG
1 CTATTACCCTACTACTTAGGGGGATAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGG
15784704 GTTAAAGCTCATTATCTTCGAT
66 GTTAAAGCTCATTATCTTCGAT
* * *
15784726 CTATTTCCCTACTGCTTAGGGTGATAAGATCTGTAAACTTCAGCTTGTTACCCTACTGCTTAGGG
1 CTATTACCCTACTACTTAGGGGGATAAGATCTGTAAA-TTCAGCTTGTTACCCTACTGCTTAGGG
15784791 GGTTAAAGCT
65 GGTTAAAGCT
15784801 TGGTGGTTTG
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
87 32 0.48
88 35 0.52
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (87 bp):
CTATTACCCTACTACTTAGGGGGATAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGG
GTTAAAGCTCATTATCTTCGAT
Found at i:15796698 original size:24 final size:24
Alignment explanation
Indices: 15796671--15796729 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 24
15796661 GTAATTGAAG
* *
15796671 AAGAGAATAATAGGTAAA-AATAAT
1 AAGAGAATAA-AAGTAAATAAGAAT
15796695 AAGATG-ATAAAAGTAAATAAGAAT
1 AAGA-GAATAAAAGTAAATAAGAAT
15796719 AAGAAGAATAA
1 AAG-AGAATAA
15796730 GTAAAAAGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 6 0.21
24 17 0.59
25 6 0.21
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (24 bp):
AAGAGAATAAAAGTAAATAAGAAT
Found at i:15796927 original size:22 final size:22
Alignment explanation
Indices: 15796899--15796948 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
15796889 TAAGGGCAGC
15796899 GTAATAAAATAAA-ATAATAATA
1 GTAATAAAATAAAGA-AATAATA
*
15796921 GTAATAAAATAAAGAAGTAATA
1 GTAATAAAATAAAGAAATAATA
15796943 GTAATA
1 GTAATA
15796949 CTAGTAGTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (22 bp):
GTAATAAAATAAAGAAATAATA
Found at i:15797440 original size:2 final size:2
Alignment explanation
Indices: 15797433--15797461 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15797423 ACTTTATAAC
15797433 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15797462 ATAAAATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15799704 original size:12 final size:12
Alignment explanation
Indices: 15799682--15799710 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15799672 ACATATTACG
15799682 AATAT-AAAAAA
1 AATATAAAAAAA
15799693 AATATAAAAAAA
1 AATATAAAAAAA
15799705 AATATA
1 AATATA
15799711 CCTCACGGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AATATAAAAAAA
Found at i:15800523 original size:27 final size:28
Alignment explanation
Indices: 15800467--15800523 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
15800457 TGCATTTTTC
*
15800467 ATATTAATATATATATCTTTTTAATATT
1 ATATTAATATATATATCGTTTTAATATT
* *
15800495 ATATTATTATGTATAT-GTTTTAATATT
1 ATATTAATATATATATCGTTTTAATATT
15800522 AT
1 AT
15800524 TAGCTATCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 12 0.46
28 14 0.54
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (28 bp):
ATATTAATATATATATCGTTTTAATATT
Found at i:15801032 original size:2 final size:2
Alignment explanation
Indices: 15801025--15801063 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
15801015 CATATCACCT
15801025 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15801064 TCCTAAATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:15801570 original size:2 final size:2
Alignment explanation
Indices: 15801565--15801610 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
15801555 CAATTCACAC
15801565 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15801607 AT AT
1 AT AT
15801611 TGGCATACAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15812132 original size:16 final size:16
Alignment explanation
Indices: 15812111--15812152 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
15812101 AATAAAACAA
15812111 AGAAAC-AAAAAGAAAT
1 AGAAACGAAAAAG-AAT
*
15812127 AGAAACGAAACAGAAT
1 AGAAACGAAAAAGAAT
15812143 AGAAACGAAA
1 AGAAACGAAA
15812153 TAGGAAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.69, C:0.10, G:0.17, T:0.05
Consensus pattern (16 bp):
AGAAACGAAAAAGAAT
Found at i:15812141 original size:11 final size:11
Alignment explanation
Indices: 15812109--15812181 Score: 57
Period size: 11 Copynumber: 6.9 Consensus size: 11
15812099 AAAATAAAAC
15812109 AAAGAAACA-A
1 AAAGAAACAGA
*
15812119 AAAGAAATAGA
1 AAAGAAACAGA
*
15812130 AACGAAACAGA
1 AAAGAAACAGA
*
15812141 ATAGAAAC-GA
1 AAAGAAACAGA
*
15812151 AATAGGAAAAAG-
1 AA-A-GAAACAGA
15812163 AAAG-AA-AGA
1 AAAGAAACAGA
15812172 AAAGAAACAG
1 AAAGAAACAG
15812182 GAAGAAAGGA
Statistics
Matches: 49, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
8 2 0.04
9 6 0.12
10 14 0.29
11 20 0.41
12 6 0.12
13 1 0.02
ACGTcount: A:0.70, C:0.07, G:0.19, T:0.04
Consensus pattern (11 bp):
AAAGAAACAGA
Found at i:15812183 original size:26 final size:28
Alignment explanation
Indices: 15812138--15812189 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
15812128 GAAACGAAAC
* *
15812138 AGAATAGAAACGAAATAGGAA-AAAGAA
1 AGAATAGAAAAGAAACAGGAAGAAAGAA
15812165 AGAA-AGAAAAGAAACAGGAAGAAAG
1 AGAATAGAAAAGAAACAGGAAGAAAG
15812190 GAAGGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.67, C:0.04, G:0.25, T:0.04
Consensus pattern (28 bp):
AGAATAGAAAAGAAACAGGAAGAAAGAA
Found at i:15814852 original size:12 final size:12
Alignment explanation
Indices: 15814835--15814861 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
15814825 GCTAATTGTG
15814835 AAAAATAAAATA
1 AAAAATAAAATA
15814847 AAAAATAAAATA
1 AAAAATAAAATA
15814859 AAA
1 AAA
15814862 TAAAGAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAATAAAATA
Found at i:15818399 original size:5 final size:5
Alignment explanation
Indices: 15818389--15818429 Score: 55
Period size: 5 Copynumber: 7.6 Consensus size: 5
15818379 CAATTTCTGA
15818389 AAAAT AAAAT AAAAAAT AAAAT AAAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT --AAAAT AAAAT -AAAAT AAAAT AAAAT AAA
15818430 GAACACACAG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 23 0.70
6 5 0.15
7 5 0.15
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:15818405 original size:12 final size:12
Alignment explanation
Indices: 15818388--15818425 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
15818378 CCAATTTCTG
15818388 AAAAATAAAATA
1 AAAAATAAAATA
15818400 AAAAATAAAAT-
1 AAAAATAAAATA
15818411 AAAAATAAAATA
1 AAAAATAAAATA
15818423 AAA
1 AAA
15818426 TAAAGAACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.44
12 14 0.56
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAATAAAATA
Found at i:15818414 original size:11 final size:11
Alignment explanation
Indices: 15818388--15818429 Score: 68
Period size: 11 Copynumber: 3.8 Consensus size: 11
15818378 CCAATTTCTG
15818388 AAAAATAAAAT
1 AAAAATAAAAT
15818399 AAAAAATAAAAT
1 -AAAAATAAAAT
15818411 AAAAATAAAAT
1 AAAAATAAAAT
15818422 -AAAATAAA
1 AAAAATAAA
15818430 GAACACACAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 8 0.27
11 11 0.37
12 11 0.37
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:15821116 original size:40 final size:40
Alignment explanation
Indices: 15820997--15821134 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 40
15820987 CTTCGAGTCA
* * * *
15820997 ATGAGACACTGGGTATCAATTTACTACTTCGGATTAATTCG
1 ATGAGACACTGGGTGTCAAATTATTACTTCGGATT-ATCCG
* * * *
15821038 ATGAGGCACTGGGTG-CCAA-T-TTACTTCGGTTTAGCCG
1 ATGAGACACTGGGTGTCAAATTATTACTTCGGATTATCCG
* *
15821075 ATAAGACACTGGGTGTCAAATTATTACTTCGAATTATCCG
1 ATGAGACACTGGGTGTCAAATTATTACTTCGGATTATCCG
* * *
15821115 ATGAGGCATTGGGTGCCAAA
1 ATGAGACACTGGGTGTCAAA
15821135 CTAGTATGTT
Statistics
Matches: 76, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
37 16 0.21
38 13 0.17
39 2 0.03
40 32 0.42
41 13 0.17
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (40 bp):
ATGAGACACTGGGTGTCAAATTATTACTTCGGATTATCCG
Found at i:15822827 original size:2 final size:2
Alignment explanation
Indices: 15822822--15822876 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
15822812 AACTAATGGC
* * *
15822822 AT AT AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
15822861 AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT
15822877 TAGAAATGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:15822854 original size:22 final size:23
Alignment explanation
Indices: 15822822--15822873 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
15822812 AACTAATGGC
*
15822822 ATATATACATAATATATATATAT
1 ATATACACATAATATATATATAT
15822845 A-ATACACATAATATATATATAT
1 ATATACACATAATATATATATAT
15822867 ATATACA
1 ATATACA
15822874 TATTAGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (23 bp):
ATATACACATAATATATATATAT
Found at i:15823715 original size:14 final size:15
Alignment explanation
Indices: 15823680--15823715 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
15823670 TTTTGGTTTT
15823680 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
15823695 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
15823709 TTTTTTT
1 TTTTTTT
15823716 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:15823716 original size:15 final size:16
Alignment explanation
Indices: 15823679--15823716 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
15823669 TTTTTGGTTT
15823679 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
15823695 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
15823709 TTTTTTTT
1 TTTTTTTT
15823717 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:15823730 original size:33 final size:33
Alignment explanation
Indices: 15823676--15823754 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 33
15823666 TTTTTTTTGG
* *
15823676 TTTTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
*
15823709 TTTTTTTTTGGTGCTGG-AATTTTTTGCTGG-AT
1 TTTTTTTTT-GTGCTGGAAATTTTTTGCTGGAAA
*
15823741 TTTTTTTTTTTGCT
1 TTTTTTTTTGTGCT
15823755 TCCCCTCTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 4 0.10
32 10 0.24
33 21 0.51
34 6 0.15
ACGTcount: A:0.11, C:0.06, G:0.18, T:0.65
Consensus pattern (33 bp):
TTTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
Found at i:15823745 original size:14 final size:15
Alignment explanation
Indices: 15823679--15823747 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 15
15823669 TTTTTGGTTT
15823679 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
15823694 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
15823709 TTTTTTTTTGGTGCTGGAA
1 --TTTTTTT--TGCTGGAA
15823728 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
15823740 TTTTTTTT
1 TTTTTTTT
15823748 TTTTGCTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
17 6 0.14
19 3 0.07
20 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:15824236 original size:35 final size:35
Alignment explanation
Indices: 15824154--15824256 Score: 167
Period size: 33 Copynumber: 3.0 Consensus size: 35
15824144 GGGGTGTGTG
*
15824154 ATGGTGCTGGCGGCAGACAGCATGGGAGAGT-GGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
15824188 GT-GTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
15824222 ATGGTGCTGGTGGCAGACAGCAT-GGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
15824256 A
1 A
15824257 GAGGCAAGTG
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
33 27 0.42
34 17 0.27
35 20 0.31
ACGTcount: A:0.23, C:0.13, G:0.48, T:0.17
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:15825041 original size:48 final size:50
Alignment explanation
Indices: 15824965--15825111 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
15824955 ATATGACCTA
**
15824965 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
15825013 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
15825067 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
15825112 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:15825347 original size:147 final size:140
Alignment explanation
Indices: 15825168--15825755 Score: 971
Period size: 147 Copynumber: 4.1 Consensus size: 140
15825158 TCAACTCACC
15825168 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
15825233 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
15825298 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
15825316 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
15825381 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
15825446 CCTCTCGCCA
131 CCTCTCGCAA
*
15825456 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
15825521 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
15825586 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
15825603 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
15825668 CGCAATATGAGTTGATTTTGAAA-ATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
15825732 CCTCTCGCAA
131 CCTCTCGCAA
*
15825742 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
15825756 CTGTCACTTG
Statistics
Matches: 422, Mismatches: 11, Indels: 23
0.93 0.02 0.05
Matches are distributed among these distances:
139 63 0.15
140 132 0.31
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 211 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:15825380 original size:70 final size:70
Alignment explanation
Indices: 15825267--15825755 Score: 854
Period size: 70 Copynumber: 6.9 Consensus size: 70
15825257 CATAAATTGA
*
15825267 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
15825332 AACAT
66 AACAT
*
15825337 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
15825402 AACAT
66 AACAT
*
15825407 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
15825472 AACATAAATT
66 AAC----A-T
*
15825482 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
15825547 GAAACAT
64 GAAACAT
*
15825554 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
15825619 AACAT
66 AACAT
15825624 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
15825689 AA-AT
66 AACAT
*
15825693 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
15825756 CTGTCACTTG
Statistics
Matches: 402, Mismatches: 10, Indels: 15
0.94 0.02 0.04
Matches are distributed among these distances:
69 64 0.16
70 268 0.67
72 1 0.00
73 1 0.00
74 1 0.00
75 1 0.00
77 66 0.16
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:15825452 original size:217 final size:217
Alignment explanation
Indices: 15825168--15825755 Score: 1084
Period size: 217 Copynumber: 2.7 Consensus size: 217
15825158 TCAACTCACC
15825168 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
15825233 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
15825298 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
15825363 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
15825386 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
15825451 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
15825516 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
15825581 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
15825603 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
15825668 CGCAATATGAGTTGATTTTG----A-AAA-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
15825725 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
15825756 CTGTCACTTG
Statistics
Matches: 367, Mismatches: 3, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
209 61 0.17
211 1 0.00
212 3 0.01
213 1 0.00
217 291 0.79
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:15837948 original size:30 final size:28
Alignment explanation
Indices: 15837867--15837949 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 28
15837857 TATATACATA
*
15837867 TGTATATAAAATATACACTAATATAATAAT
1 TGTA-ATAATATATACAC-AATATAATAAT
* *
15837897 AGTTATAATA-ATACTAGCAATAGTAATAATT
1 TGTAATAATATATAC-A-CAATA-TAATAA-T
15837928 TGTAATAATATATACACAATAT
1 TGTAATAATATATACACAATAT
15837950 GGAATTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
28 4 0.09
29 11 0.26
30 14 0.33
31 10 0.23
32 4 0.09
ACGTcount: A:0.51, C:0.07, G:0.06, T:0.36
Consensus pattern (28 bp):
TGTAATAATATATACACAATATAATAAT
Found at i:15838066 original size:22 final size:21
Alignment explanation
Indices: 15838034--15838083 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
15838024 AACTAATGGC
*
15838034 ATATATACATAATATATATAT
1 ATATACACATAATATATATAT
15838055 ATAATACACATAATATATATAT
1 AT-ATACACATAATATATATAT
15838077 ATATACA
1 ATATACA
15838084 TATTAGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 7 0.26
22 20 0.74
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATACACATAATATATATAT
Found at i:15838618 original size:11 final size:11
Alignment explanation
Indices: 15838602--15838640 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
15838592 AGAAAAAAAA
15838602 GGAAGAGAGAG
1 GGAAGAGAGAG
15838613 GGAAGAGAGAAG
1 GGAAGAGAG-AG
*
15838625 GGAGAGAGAAAG
1 GGA-AGAGAGAG
15838637 GGAA
1 GGAA
15838641 ATCCGGTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 10 0.40
12 10 0.40
13 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (11 bp):
GGAAGAGAGAG
Found at i:15838935 original size:14 final size:15
Alignment explanation
Indices: 15838900--15838935 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
15838890 TTTTTTGGTT
15838900 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
15838915 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
15838929 TTTTTTT
1 TTTTTTT
15838936 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:15838936 original size:15 final size:16
Alignment explanation
Indices: 15838899--15838936 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
15838889 TTTTTTTGGT
15838899 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
15838915 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
15838929 TTTTTTTT
1 TTTTTTTT
15838937 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:15838936 original size:34 final size:31
Alignment explanation
Indices: 15838898--15838974 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 31
15838888 TTTTTTTTGG
*
15838898 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAATTT
1 TTTTTTTTTGCTGG-AATTTTTTGCTGG--ATTT
**
15838932 TTTTTTGGTGCTGGAATTTTTTGCTGGATTT
1 TTTTTTTTTGCTGGAATTTTTTGCTGGATTT
15838963 TTTTTTTTTGCT
1 TTTTTTTTTGCT
15838975 TCCCCTCTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
31 14 0.37
33 12 0.32
34 12 0.32
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.64
Consensus pattern (31 bp):
TTTTTTTTTGCTGGAATTTTTTGCTGGATTT
Found at i:15838950 original size:33 final size:32
Alignment explanation
Indices: 15838898--15838974 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 32
15838888 TTTTTTTTGG
*
15838898 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAAT
1 TTTTTTTTTGCTGGAAATTTTTTGCTGGAAAT
**
15838930 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATTT
1 TTTTTTTT--TGCTGGAAATTTTTTGCTGGAAAT
15838963 TTTTTTTTTGCT
1 TTTTTTTTTGCT
15838975 TCCCCTCTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
31 4 0.10
32 8 0.20
33 22 0.55
34 6 0.15
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.64
Consensus pattern (32 bp):
TTTTTTTTTGCTGGAAATTTTTTGCTGGAAAT
Found at i:15839416 original size:35 final size:35
Alignment explanation
Indices: 15839377--15839445 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
15839367 GGGTGTGTGA
15839377 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
*
15839412 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
15839446 AGAGGCAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.13, G:0.51, T:0.16
Consensus pattern (35 bp):
TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
Found at i:15846800 original size:2 final size:2
Alignment explanation
Indices: 15846793--15846916 Score: 50
Period size: 2 Copynumber: 65.0 Consensus size: 2
15846783 GGAATTTAAA
* * *
15846793 AT AT AT AT AT AT AT AT AT AT GT AT AT A- AT AGT AT TT A- AG A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
* * * ** *
15846833 AT AT AT AC AT A- AG AA AT AT AT A- ACT A- AT GGC AT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT -AT AT AT AT AT AT
* * *
15846874 A- AT AT AT AT AT A- AT AC AC AT A- AT AT AT AT AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15846913 AT AT
1 AT AT
15846917 TAGAAATGAT
Statistics
Matches: 92, Mismatches: 18, Indels: 24
0.69 0.13 0.18
Matches are distributed among these distances:
1 9 0.10
2 80 0.87
3 3 0.03
ACGTcount: A:0.51, C:0.06, G:0.05, T:0.39
Consensus pattern (2 bp):
AT
Found at i:15846893 original size:20 final size:21
Alignment explanation
Indices: 15846864--15846915 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
15846854 AACTAATGGC
*
15846864 ATATATACATAATATATATAT
1 ATATACACATAATATATATAT
15846885 A-ATACACATAATATATATAT
1 ATATACACATAATATATATAT
*
15846905 ATATATACATA
1 ATATACACATA
15846916 TTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATACACATAATATATATAT
Found at i:15847752 original size:14 final size:15
Alignment explanation
Indices: 15847717--15847752 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
15847707 TTTTTTGTTT
15847717 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
15847732 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
15847746 TTTTTTT
1 TTTTTTT
15847753 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:15847752 original size:34 final size:33
Alignment explanation
Indices: 15847714--15847793 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
15847704 TTTTTTTTTG
*
15847714 TTTTTTTTTTGCTGGAAATTTTTTTCTGGAAATT
1 TTTTTTTTTTGCTGG-AATTTTTTGCTGGAAATT
** **
15847748 TTTTTTTGGTGCTGGAATTTTTTGCTGGATTTT
1 TTTTTTTTTTGCTGGAATTTTTTGCTGGAAATT
15847781 TTTTTTTTTTGCT
1 TTTTTTTTTTGCT
15847794 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
33 26 0.67
34 13 0.33
ACGTcount: A:0.11, C:0.06, G:0.17, T:0.65
Consensus pattern (33 bp):
TTTTTTTTTTGCTGGAATTTTTTGCTGGAAATT
Found at i:15847753 original size:15 final size:16
Alignment explanation
Indices: 15847716--15847753 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
15847706 TTTTTTTGTT
15847716 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
15847732 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
15847746 TTTTTTTT
1 TTTTTTTT
15847754 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:15847782 original size:14 final size:15
Alignment explanation
Indices: 15847716--15847784 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 15
15847706 TTTTTTTGTT
15847716 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
15847731 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
15847746 TTTTTTTTTGGTGCTGGAA
1 --TTTTTTT--TGCTGGAA
15847765 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
15847777 TTTTTTTT
1 TTTTTTTT
15847785 TTTTTTGCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
17 6 0.14
19 3 0.07
20 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:15847996 original size:18 final size:20
Alignment explanation
Indices: 15847973--15848011 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15847963 AACAAAGCAA
15847973 AGATAA-ACAG-AAAAATTG
1 AGATAACACAGAAAAAATTG
*
15847991 AGATAACAGAGAAAAAATTG
1 AGATAACACAGAAAAAATTG
15848011 A
1 A
15848012 AGTTCACCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 3 0.17
20 9 0.50
ACGTcount: A:0.62, C:0.05, G:0.18, T:0.15
Consensus pattern (20 bp):
AGATAACACAGAAAAAATTG
Found at i:15848236 original size:35 final size:35
Alignment explanation
Indices: 15848197--15848265 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
15848187 GGGTGTGTGA
15848197 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
*
15848232 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
15848266 AGAGGCAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.13, G:0.51, T:0.16
Consensus pattern (35 bp):
TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
Found at i:15855568 original size:18 final size:19
Alignment explanation
Indices: 15855547--15855629 Score: 50
Period size: 18 Copynumber: 4.5 Consensus size: 19
15855537 AATAATTTGT
15855547 TAATATTTAC-ATTTTTTA
1 TAATATTTACAATTTTTTA
* *
15855565 TAATTTTTGCAATTTTTTAA
1 TAATATTTACAATTTTTT-A
*
15855585 TAAGT-TGTTACAA--TGTTA
1 TAA-TAT-TTACAATTTTTTA
* *
15855603 TAATTTTTA-ACTTTTTTA
1 TAATATTTACAATTTTTTA
*
15855621 TAATTTTTA
1 TAATATTTA
15855630 TTGTTTTTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
16 1 0.02
17 4 0.08
18 26 0.50
19 10 0.19
20 5 0.10
21 6 0.12
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TAATATTTACAATTTTTTA
Found at i:15855618 original size:46 final size:45
Alignment explanation
Indices: 15855518--15855618 Score: 105
Period size: 46 Copynumber: 2.2 Consensus size: 45
15855508 TAAGTTTTAA
* * *
15855518 TAACTATTTACAATTATTTAATAATTTGTTAATATTTACATTTTT
1 TAACTTTTTACAATTATTTAATAAGTTGTTAATATTTACAATTTT
* * * *
15855563 TATAATTTTTGCAATTTTTTAATAAGTTGTTACA-ATGTTATAATTTT
1 TA-ACTTTTTACAATTATTTAATAAGTTGTTA-ATAT-TTACAATTTT
15855610 TAACTTTTT
1 TAACTTTTT
15855619 TATAATTTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
45 2 0.04
46 32 0.71
47 11 0.24
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.56
Consensus pattern (45 bp):
TAACTTTTTACAATTATTTAATAAGTTGTTAATATTTACAATTTT
Found at i:15857505 original size:16 final size:16
Alignment explanation
Indices: 15857484--15857515 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15857474 TAATATTAGG
*
15857484 GGTAAGGAATGAGAGT
1 GGTAAGGAAAGAGAGT
15857500 GGTAAGGAAAGAGAGT
1 GGTAAGGAAAGAGAGT
15857516 AATAAGGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.44, T:0.16
Consensus pattern (16 bp):
GGTAAGGAAAGAGAGT
Found at i:15857971 original size:29 final size:29
Alignment explanation
Indices: 15857929--15857986 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
15857919 AACTTTCGTG
15857929 TTTGGCTTATGAACAGAATGTCGTGTCAA
1 TTTGGCTTATGAACAGAATGTCGTGTCAA
15857958 TTTGGCTTATGAACAGAATGTCGTGTCAA
1 TTTGGCTTATGAACAGAATGTCGTGTCAA
15857987 GGGTCGTGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (29 bp):
TTTGGCTTATGAACAGAATGTCGTGTCAA
Found at i:15858987 original size:13 final size:13
Alignment explanation
Indices: 15858954--15859008 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
15858944 AGGCTAAAGC
15858954 TAAATTAAT-AAAA
1 TAAA-TAATAAAAA
15858967 TAAA-AATAAAAA
1 TAAATAATAAAAA
*
15858979 TAAATAATAAAAC
1 TAAATAATAAAAA
*
15858992 TAAATAAAATAAAA
1 TAAATAATA-AAAA
15859006 TAA
1 TAA
15859009 TATCTTCTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 3 0.08
12 8 0.22
13 19 0.53
14 6 0.17
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAATAATAAAAA
Found at i:15859008 original size:10 final size:11
Alignment explanation
Indices: 15858960--15859005 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
15858950 AAGCTAAATT
15858960 AATAAAATAAA
1 AATAAAATAAA
15858971 AATAAAAATAAA
1 AAT-AAAATAAA
15858983 TAATAAAACT--A
1 -AATAAAA-TAAA
15858994 AATAAAATAAA
1 AATAAAATAAA
15859005 A
1 A
15859006 TAATATCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
9 1 0.03
10 7 0.23
11 6 0.20
12 12 0.40
13 4 0.13
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:15859645 original size:6 final size:7
Alignment explanation
Indices: 15859628--15859652 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15859618 TATTATTATA
15859628 TTTTTTC
1 TTTTTTC
15859635 TTTTTTC
1 TTTTTTC
15859642 TTTTTTC
1 TTTTTTC
15859649 TTTT
1 TTTT
15859653 ATTTGAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:15862497 original size:20 final size:20
Alignment explanation
Indices: 15862472--15862511 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15862462 TTTTAATTTC
*
15862472 TTTTTCTTTTTTCTCTCTTT
1 TTTTTCGTTTTTCTCTCTTT
*
15862492 TTTTTCGTTTTTCTTTCTTT
1 TTTTTCGTTTTTCTCTCTTT
15862512 AGGTCACCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (20 bp):
TTTTTCGTTTTTCTCTCTTT
Found at i:15862652 original size:17 final size:18
Alignment explanation
Indices: 15862624--15862674 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 18
15862614 GATTGGGTGG
15862624 TGGGTATTGGGTTGATTT
1 TGGGTATTGGGTTGATTT
*
15862642 TGGGT-TTGGGTTTA-TT
1 TGGGTATTGGGTTGATTT
15862658 TGGGTATTGGGTATGAT
1 TGGGTATTGGGT-TGAT
15862675 AAGTTAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 7 0.25
17 14 0.50
18 7 0.25
ACGTcount: A:0.12, C:0.00, G:0.39, T:0.49
Consensus pattern (18 bp):
TGGGTATTGGGTTGATTT
Found at i:15869520 original size:7 final size:7
Alignment explanation
Indices: 15869508--15869543 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
15869498 AAATTAATAA
15869508 AATAAAT
1 AATAAAT
15869515 AATAAAT
1 AATAAAT
15869522 AATAAAT
1 AATAAAT
15869529 AATAAA-
1 AATAAAT
*
15869535 ACTAAAT
1 AATAAAT
15869542 AA
1 AA
15869544 AATAAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (7 bp):
AATAAAT
Found at i:15869525 original size:14 final size:13
Alignment explanation
Indices: 15869497--15869553 Score: 62
Period size: 14 Copynumber: 4.2 Consensus size: 13
15869487 AGGCTAAAGC
15869497 TAAATTAAT-AAAA
1 TAAA-TAATAAAAA
15869510 TAAATAATAAATAA
1 TAAATAATAAA-AA
*
15869524 TAAATAATAAAAC
1 TAAATAATAAAAA
*
15869537 TAAATAAAATAAAA
1 TAAATAATA-AAAA
15869551 TAA
1 TAA
15869554 TATCTTCTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
12 4 0.11
13 15 0.39
14 19 0.50
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (13 bp):
TAAATAATAAAAA
Found at i:15869552 original size:27 final size:27
Alignment explanation
Indices: 15869497--15869553 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
15869487 AGGCTAAAGC
*
15869497 TAAATTAATAAAATAAATAATAAATAA
1 TAAATTAATAAAATAAATAATAAAAAA
15869524 TAAA-TAATAAAACTAAATAA-AATAAAA
1 TAAATTAATAAAA-TAAATAATAA-AAAA
15869551 TAA
1 TAA
15869554 TATCTTCTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 10 0.37
27 17 0.63
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (27 bp):
TAAATTAATAAAATAAATAATAAAAAA
Found at i:15874887 original size:18 final size:18
Alignment explanation
Indices: 15874864--15875006 Score: 73
Period size: 18 Copynumber: 7.7 Consensus size: 18
15874854 ATTAAACCCC
15874864 CCCAAAAAAAAAACCTAA
1 CCCAAAAAAAAAACCTAA
15874882 CCCAAAAAAAAAAAGAAAAACCTAA
1 CCC-----A-AAAA-AAAAACCTAA
***
15874907 CCCCCCAAAAAAACCTAA
1 CCCAAAAAAAAAACCTAA
**
15874925 CCCAAAAAAAAAA-AGAA
1 CCCAAAAAAAAAACCTAA
**
15874942 -GAAAAAAGAAAAACCTAA
1 CCCAAAAA-AAAAACCTAA
**
15874960 CCCAAAAAAAAAGA-AGAA
1 CCCAAAAAAAAA-ACCTAA
15874978 ---AAAAAGAAAAACCTAA
1 CCCAAAAA-AAAAACCTAA
15874994 CCCAAAAAAAAAA
1 CCCAAAAAAAAAA
15875007 AACTAAAAAA
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
15 6 0.07
16 11 0.12
17 7 0.08
18 36 0.40
19 13 0.14
23 1 0.01
24 4 0.04
25 13 0.14
ACGTcount: A:0.70, C:0.22, G:0.05, T:0.03
Consensus pattern (18 bp):
CCCAAAAAAAAAACCTAA
Found at i:15874954 original size:35 final size:36
Alignment explanation
Indices: 15874915--15875007 Score: 165
Period size: 34 Copynumber: 2.7 Consensus size: 36
15874905 AACCCCCCAA
15874915 AAAAACCTAACCCAAAAAAAAAAAGAAG-AAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAAG
15874950 AAAAACCTAACCC--AAAAAAAAAGAAGAAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAAG
15874984 AAAAACCTAACCCAAAAAAAAAAA
1 AAAAACCTAACCCAAAAAAAAAAA
15875008 ACTAAAAAAC
Statistics
Matches: 55, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
33 13 0.24
34 20 0.36
35 13 0.24
36 9 0.16
ACGTcount: A:0.74, C:0.16, G:0.06, T:0.03
Consensus pattern (36 bp):
AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAAG
Found at i:15874967 original size:34 final size:35
Alignment explanation
Indices: 15874915--15875006 Score: 161
Period size: 35 Copynumber: 2.7 Consensus size: 35
15874905 AACCCCCCAA
15874915 AAAAACCTAACCCAAAAAAAAAAAGAAG-AAAAAAG
1 AAAAACCTAACCC-AAAAAAAAAAGAAGAAAAAAAG
15874950 AAAAACCTAACCC-AAAAAAAAAGAAGAAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAGAAGAAAAAAAG
15874984 AAAAACCTAACCCAAAAAAAAAA
1 AAAAACCTAACCCAAAAAAAAAA
15875007 AACTAAAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
33 13 0.24
34 20 0.36
35 22 0.40
ACGTcount: A:0.74, C:0.16, G:0.07, T:0.03
Consensus pattern (35 bp):
AAAAACCTAACCCAAAAAAAAAAGAAGAAAAAAAG
Found at i:15875305 original size:12 final size:12
Alignment explanation
Indices: 15875290--15875331 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
15875280 TTCTTTCGAA
15875290 TCTTTTTTTCTT
1 TCTTTTTTTCTT
*
15875302 TCTTTTTTGTGTT
1 TCTTTTTT-TCTT
15875315 GT-TTTTTTTCTT
1 -TCTTTTTTTCTT
15875327 TCTTT
1 TCTTT
15875332 ATATATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 1 0.04
12 14 0.56
13 9 0.36
14 1 0.04
ACGTcount: A:0.00, C:0.12, G:0.07, T:0.81
Consensus pattern (12 bp):
TCTTTTTTTCTT
Found at i:15875818 original size:11 final size:11
Alignment explanation
Indices: 15875802--15875835 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
15875792 GTATATTGTA
15875802 TATATTATATT
1 TATATTATATT
*
15875813 TATATTATATA
1 TATATTATATT
15875824 TATATATATATT
1 TATAT-TATATT
15875836 CTTAATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TATATTATATT
Found at i:15876247 original size:16 final size:15
Alignment explanation
Indices: 15876223--15876257 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
15876213 TAATTATTAT
15876223 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
15876239 TATTTTAATATTTTA
1 TATTCTAATATTTTA
15876254 TATT
1 TATT
15876258 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:15880101 original size:21 final size:21
Alignment explanation
Indices: 15880075--15880118 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
15880065 AATAGTGGTG
15880075 GCGGTGAAATT-GATTACTGTA
1 GCGGTGAAATTGGA-TACTGTA
*
15880096 GCGGTGAGATTGGATACTGTA
1 GCGGTGAAATTGGATACTGTA
15880117 GC
1 GC
15880119 AATGGGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.25, C:0.11, G:0.34, T:0.30
Consensus pattern (21 bp):
GCGGTGAAATTGGATACTGTA
Found at i:15881916 original size:26 final size:25
Alignment explanation
Indices: 15881879--15881984 Score: 167
Period size: 26 Copynumber: 4.1 Consensus size: 25
15881869 GTACAAATTA
15881879 ATAATGTGTTAGGTAAATGTTCCATG
1 ATAATG-GTTAGGTAAATGTTCCATG
*
15881905 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGG-TTAGGTAAATGTTCCATG
15881931 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAAT-GGTTAGGTAAATGTTCCATG
15881957 ATAATGGTTTAGGTAAATGTTCCATG
1 ATAATGG-TTAGGTAAATGTTCCATG
15881983 AT
1 AT
15881985 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
25 3 0.04
26 70 0.93
27 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.37
Consensus pattern (25 bp):
ATAATGGTTAGGTAAATGTTCCATG
Found at i:15881942 original size:52 final size:52
Alignment explanation
Indices: 15881879--15881984 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
15881869 GTACAAATTA
*
15881879 ATAATGTGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATG
* *
15881931 ATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATG
15881983 AT
1 AT
15881985 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.37
Consensus pattern (52 bp):
ATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATG
Found at i:15883481 original size:26 final size:26
Alignment explanation
Indices: 15883445--15883496 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15883435 CCTCTATGTA
15883445 TGGAAAATTACTGTTATACCCCTAGG
1 TGGAAAATTACTGTTATACCCCTAGG
15883471 TGGAAAATTACTGTTATACCCCTAGG
1 TGGAAAATTACTGTTATACCCCTAGG
15883497 GTTACTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
TGGAAAATTACTGTTATACCCCTAGG
Found at i:15883640 original size:27 final size:27
Alignment explanation
Indices: 15883600--15883740 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
15883590 AGGAAGCGTC
15883600 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
15883627 CTGGTGGCTTTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
15883653 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* *
15883681 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
15883708 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
15883735 CTGGTG
1 CTGGTG
15883741 ACTTCGTCAC
Statistics
Matches: 102, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
26 11 0.11
27 87 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:15883679 original size:54 final size:54
Alignment explanation
Indices: 15883597--15883758 Score: 247
Period size: 54 Copynumber: 3.0 Consensus size: 54
15883587 TGGAGGAAGC
15883597 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
*
15883651 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
* * * * *
15883705 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTTTGCCACATATATCT
15883758 G
1 G
15883759 GCAGCCTCGC
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 13 0.13
54 87 0.87
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
Found at i:15883751 original size:27 final size:27
Alignment explanation
Indices: 15883600--15883758 Score: 154
Period size: 27 Copynumber: 5.9 Consensus size: 27
15883590 AGGAAGCGTC
15883600 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
* *
15883627 CTGGTGGCTTTGCCACATATATCTGT-C
1 CTGGTGGCTTCGCCACA-ATATCTGTAT
15883654 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
15883681 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
15883708 CTGGTGGC-TCTGCCACAATATCTGTAT
1 CTGGTGGCTTC-GCCACAATATCTGTAT
* *
15883735 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
15883759 GCAGCCTCGC
Statistics
Matches: 116, Mismatches: 4, Indels: 24
0.81 0.03 0.17
Matches are distributed among these distances:
25 1 0.01
26 10 0.09
27 100 0.86
28 5 0.04
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:15883752 original size:81 final size:80
Alignment explanation
Indices: 15883600--15883758 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 80
15883590 AGGAAGCGTC
* *
15883600 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
15883665 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
15883681 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
15883744 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
15883759 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
80 17 0.25
81 52 0.75
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:15885292 original size:32 final size:32
Alignment explanation
Indices: 15885253--15885412 Score: 250
Period size: 32 Copynumber: 5.0 Consensus size: 32
15885243 CATAAAAAAT
15885253 ATCATACATTA-TGTTTACATATAAAAAAGTAG
1 ATCATACATTAGT-TTTACATATAAAAAAGTAG
*
15885285 ATCATACATTAGTTTTGCATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* * *
15885317 ATCATATATTAGGTTCACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
15885349 ATCATACATTAGTTTTGCATATGAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
15885381 ATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
15885413 CATAGTTATA
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
32 114 0.99
33 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (32 bp):
ATCATACATTAGTTTTACATATAAAAAAGTAG
Found at i:15888148 original size:3 final size:3
Alignment explanation
Indices: 15888123--15888201 Score: 87
Period size: 3 Copynumber: 27.0 Consensus size: 3
15888113 AGAAAGTACC
*
15888123 ATA A-A ATA AAA ATA AGT- ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15888167 ATA ATA ATA ATA CA-A ATA AT- ATA A-A ATAA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA AT-A ATA ATA
15888202 GAACAATTCT
Statistics
Matches: 66, Mismatches: 2, Indels: 16
0.79 0.02 0.19
Matches are distributed among these distances:
2 8 0.12
3 53 0.80
4 5 0.08
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:15893913 original size:53 final size:53
Alignment explanation
Indices: 15893830--15893935 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 53
15893820 GTATTTTTCA
* * * *
15893830 ATTTGTAAGACATAATATTGTTGGTTTTGAACAAAATTATTTAATTATGTTTT
1 ATTTGTAAGACATAATATTGTCGATCTTGAACAAAATCATTTAATTATGTTTT
* *
15893883 ATTTGTTAA-ACATAATGTTGTCGATCTTGAATAAAATCATTTAATTATGTTTT
1 ATTTG-TAAGACATAATATTGTCGATCTTGAACAAAATCATTTAATTATGTTTT
15893936 TATTAGCACT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 43 0.93
54 3 0.07
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.48
Consensus pattern (53 bp):
ATTTGTAAGACATAATATTGTCGATCTTGAACAAAATCATTTAATTATGTTTT
Found at i:15894881 original size:10 final size:10
Alignment explanation
Indices: 15894866--15894891 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
15894856 CATTTAACCG
15894866 AATTAACCAA
1 AATTAACCAA
15894876 AATTAACCAA
1 AATTAACCAA
15894886 AATTAA
1 AATTAA
15894892 TCGAATTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (10 bp):
AATTAACCAA
Found at i:15896400 original size:179 final size:179
Alignment explanation
Indices: 15896116--15896458 Score: 537
Period size: 179 Copynumber: 1.9 Consensus size: 179
15896106 AGTGGTTTAA
* * **
15896116 GCCGACATGCTGAGCTTAAAATATGAATCAAAATCAGATCAGAGTCGAGAATTAGTTTGGCTTCT
1 GCCGACATGCTGAGCTTAAAATACGAATCAAAATCAGATCAGAGTCGAGAATTAGCTCAGCTTCT
15896181 TAGGAAAGTCAAGACTTTGAGTATTAGGGCAAGGTCGTATATGTAAAACATA-TCTGTTTTATGT
66 TAGGAAAGTCAAGACTTTGAGTATTAGGGCAAGGTCGTATATGTAAAACATATTC-GTTTTATGT
15896245 AAAGAGATTTAATTTCTAGTAAAGTTGTTCTAATAACCCTAGCAGTTCAG
130 AAAGAGATTTAATTTCTAGTAAAGTTGTTCTAATAACCCTAGCAGTTCAG
* * *
15896295 GCCGACATGCTGAGCTTAAAATACGAATCAGAATCAGATC-GGGGCTGAGAATTAGCTCAGCTTC
1 GCCGACATGCTGAGCTTAAAATACGAATCAAAATCAGATCAGAGTC-GAGAATTAGCTCAGCTTC
* * * *
15896359 TTAGGAAAGTCAAGGCTTTGAGTATTAGGGGAATGTCGTATATGTAAAATATATTCGTTTTATGT
65 TTAGGAAAGTCAAGACTTTGAGTATTAGGGCAAGGTCGTATATGTAAAACATATTCGTTTTATGT
**
15896424 AAAGAGATTTGTTTTCTAGTAAAGTTGTTCTAATA
130 AAAGAGATTTAATTTCTAGTAAAGTTGTTCTAATA
15896459 GAATTGAATC
Statistics
Matches: 149, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
178 3 0.02
179 144 0.97
180 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (179 bp):
GCCGACATGCTGAGCTTAAAATACGAATCAAAATCAGATCAGAGTCGAGAATTAGCTCAGCTTCT
TAGGAAAGTCAAGACTTTGAGTATTAGGGCAAGGTCGTATATGTAAAACATATTCGTTTTATGTA
AAGAGATTTAATTTCTAGTAAAGTTGTTCTAATAACCCTAGCAGTTCAG
Found at i:15897535 original size:42 final size:46
Alignment explanation
Indices: 15897472--15897692 Score: 213
Period size: 49 Copynumber: 4.8 Consensus size: 46
15897462 CTTTGTTTAC
* * *
15897472 TCGATGCCATAG-TTCAACTATGGTCTTACAC-AT-C-T-TCATATA
1 TCGATGCCATAGCCT-AGCTATGGTCTTACACAATACATATCACATA
*
15897514 TCGATGTCATAGCCTAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCTAGCTATGGTCTTACAC--AAT-ACATATCACATA
15897563 TCGATGCCATAGCCTAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCTAGCTATGGTCTTACAC--AAT-ACATATCACATA
* * *
15897612 TCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCA-C
1 TCGATGCCATAGCCTAGCTATGGTCTTACAC-AAT-ACATATCACATA
* * * *
15897659 T-GATGCCATATCCCAGATATGGTCTTATACAATA
1 TCGATGCCATAGCCTAGCTATGGTCTTACACAATA
15897693 GAATATATCA
Statistics
Matches: 159, Mismatches: 12, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
42 26 0.16
43 1 0.01
44 1 0.01
45 5 0.03
46 26 0.16
47 2 0.01
48 14 0.09
49 84 0.53
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (46 bp):
TCGATGCCATAGCCTAGCTATGGTCTTACACAATACATATCACATA
Found at i:15897574 original size:49 final size:49
Alignment explanation
Indices: 15897511--15897685 Score: 266
Period size: 49 Copynumber: 3.6 Consensus size: 49
15897501 ACATCTTCAT
* *
15897511 ATATCGATGTCATAGCCTAGCTATGGTCTTACACGTAATCACATATCAC
1 ATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCAC
*
15897560 ATATCGATGCCATAGCCTAGCTATGGTCTTACACGTAATCACATATCAC
1 ATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCAC
*
15897609 ATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATATCTC
1 ATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCAC
* * *
15897657 A-CT-GATGCCATATCCCAGATATGGTCTTA
1 ATATCGATGCCATAGCCCAGCTATGGTCTTA
15897686 TACAATAGAA
Statistics
Matches: 120, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
46 24 0.20
47 1 0.01
48 13 0.11
49 82 0.68
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (49 bp):
ATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCAC
Found at i:15897716 original size:47 final size:46
Alignment explanation
Indices: 15897532--15897736 Score: 178
Period size: 49 Copynumber: 4.3 Consensus size: 46
15897522 ATAGCCTAGC
* * * * * *
15897532 TATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCTAGC
1 TATGGTCTTATACG-AATAACATATCAC--ACCGATGCCATATCCCAGA
* * * * *
15897581 TATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAGC
1 TATGGTCTTATACG-AATAACATATCAC--ACCGATGCCATATCCCAGA
* * * *
15897630 TATGGTCTTACACGAATCACATATCTCACTGATGCCATATCCCAGA
1 TATGGTCTTATACGAATAACATATCACACCGATGCCATATCCCAGA
* *
15897676 TATGGTCTTATAC-AATAGAATATATCACACCGATGCCATATCCCAAA
1 TATGGTCTTATACGAAT--AACATATCACACCGATGCCATATCCCAGA
15897723 TATGGTCTTATACG
1 TATGGTCTTATACG
15897737 GAAATCACTT
Statistics
Matches: 141, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
45 3 0.02
46 27 0.19
47 37 0.26
48 12 0.09
49 62 0.44
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (46 bp):
TATGGTCTTATACGAATAACATATCACACCGATGCCATATCCCAGA
Found at i:15897789 original size:31 final size:31
Alignment explanation
Indices: 15897754--15898056 Score: 269
Period size: 31 Copynumber: 9.8 Consensus size: 31
15897744 CTTGTCACTT
* *
15897754 GTAGCCGAAGCTACCACTATTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
15897785 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * *
15897816 GTAGTCGGAGCTACCATTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
15897847 GTAGCAGAAGCTACCACTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
15897878 GTAGCCGAAGCTACCACTTTTCACTTG-TCATTT
1 GTAGCCGAAGCTACCACTTTTCAC-TGATCA--G
* ** ** * *
15897911 GT-TCTTATACGGAAATCACTTGTCACT--T---
1 GTAGCCGA-A--GCTACCACTTTTCACTGATCAG
*
15897939 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
15897970 GTAGCCGGAGCTACCATTTTTCACTTATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
15898001 GTAGTCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
15898032 GTAGTCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
15898057 TGTCATTTGT
Statistics
Matches: 225, Mismatches: 35, Indels: 24
0.79 0.12 0.08
Matches are distributed among these distances:
26 11 0.05
28 4 0.02
29 2 0.01
31 188 0.84
32 4 0.02
33 4 0.02
34 1 0.00
35 11 0.05
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:15898065 original size:154 final size:154
Alignment explanation
Indices: 15897785--15898066 Score: 458
Period size: 154 Copynumber: 1.8 Consensus size: 154
15897775 CACTAATCAG
* * * *
15897785 GTAGCCGGAGCTACCATTTTTCACTGATCAGGTAGTCGGAGCTACCATTTTTCACTGATCAAGTA
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCATTTTTCACTGATCAAGTA
15897850 GCAGAAGCTACCACTTTTCACTGATCAAGTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTTC
66 GCAGAAGCTACCACTTTTCACTGATCAAGTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTTC
15897915 TTATACGGAAATCACTTGTCACTT
131 TTATACGGAAATCACTTGTCACTT
* *
15897939 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCATTTTTCACTTATCAGGTA
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCATTTTTCACTGATCAAGTA
* * * *
15898004 GTC-GGAGCTACCATTTTTCACTGATCAGGTAGTCGAAGCTACCACTTTTCACTTGTCATTTGT
66 G-CAGAAGCTACCACTTTTCACTGATCAAGTAGCCGAAGCTACCACTTTTCACTTGTCATTTGT
15898067 CCTTGATCAG
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
154 116 0.99
155 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (154 bp):
GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCATTTTTCACTGATCAAGTA
GCAGAAGCTACCACTTTTCACTGATCAAGTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTTC
TTATACGGAAATCACTTGTCACTT
Found at i:15898129 original size:50 final size:51
Alignment explanation
Indices: 15898032--15898160 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
15898022 CACTGATCAG
* * * * *
15898032 GTAGTCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
*
15898083 GTAGCCGAAGCTATTACTTATCACTT-TCACTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
15898133 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
15898161 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 47 0.67
51 23 0.33
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
Found at i:15898179 original size:11 final size:11
Alignment explanation
Indices: 15898163--15898192 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
15898153 TCACTTGTTG
15898163 CCATGGTCCAA
1 CCATGGTCCAA
15898174 CCATGGTCCAA
1 CCATGGTCCAA
15898185 CCATGGTC
1 CCATGGTC
15898193 TTTTCCTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.37, G:0.20, T:0.20
Consensus pattern (11 bp):
CCATGGTCCAA
Found at i:15906747 original size:5 final size:5
Alignment explanation
Indices: 15906739--15906764 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
15906729 GTCAATTCAA
15906739 GACCC GACCC GACCC GACCC GACCC G
1 GACCC GACCC GACCC GACCC GACCC G
15906765 CCTAGGATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.58, G:0.23, T:0.00
Consensus pattern (5 bp):
GACCC
Found at i:15907081 original size:22 final size:21
Alignment explanation
Indices: 15907055--15907110 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
15907045 GTTATTTTCC
15907055 ATATTATGTATTAAATTAACAT
1 ATATTAT-TATTAAATTAACAT
** *
15907077 ATATTATTATTATTTTAACTT
1 ATATTATTATTAAATTAACAT
15907098 ATTATTATTATTA
1 A-TATTATTATTA
15907111 TTATTATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (21 bp):
ATATTATTATTAAATTAACAT
Found at i:15907086 original size:3 final size:3
Alignment explanation
Indices: 15907078--15907176 Score: 164
Period size: 3 Copynumber: 32.3 Consensus size: 3
15907068 AATTAACATA
15907078 TAT TAT TAT TAT T-T TAACT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
15907124 TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
15907170 TAT TAT T
1 TAT TAT T
15907177 TTGTTAATAT
Statistics
Matches: 92, Mismatches: 0, Indels: 8
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.02
3 84 0.91
4 4 0.04
5 2 0.02
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:15907288 original size:23 final size:23
Alignment explanation
Indices: 15907248--15907323 Score: 64
Period size: 23 Copynumber: 3.1 Consensus size: 23
15907238 TAATTCATTA
**
15907248 ATTTATTATTAACATATTCTTATT
1 ATTTATTATTAATGTATT-TTATT
*
15907272 ATTT-TTATTAATGTATTAGTATT
1 ATTTATTATTAATGTATT-TTATT
*
15907295 AGTATTATATATTAGTGTATTTTATT
1 A-T-TTAT-TATTAATGTATTTTATT
15907321 ATT
1 ATT
15907324 ATATATGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
23 16 0.38
24 6 0.14
25 3 0.07
26 6 0.14
27 11 0.26
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.59
Consensus pattern (23 bp):
ATTTATTATTAATGTATTTTATT
Found at i:15907607 original size:147 final size:147
Alignment explanation
Indices: 15907291--15907828 Score: 667
Period size: 147 Copynumber: 3.7 Consensus size: 147
15907281 AATGTATTAG
* *
15907291 TATTAGTATTATATATTAGTGTAT-TTTATTATTATATATGTATATGTATATAT-T-TTTATACA
1 TATTATTATTA-ATATTAGTGTGTATTT-TTATTATATATGTATATGTATATATATATTTATACA
15907353 TAGTATTATTTTTTTTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTT-TATTT
64 TAGTATTA--TTTTTTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTTGTATTT
15907417 TAATATTATTACTATTATCAT
127 TAATATTATTACTATTATCAT
*
15907438 TATTATTATTAATATTAGTGTGTATTTTTATTGTATATGTATATGTATATAT-T-TTTATACATA
1 TATTATTATTAATATTAGTGTGTATTTTTATTATATATGTATATGTATATATATATTTATACATA
*
15907501 GTATTATTTTTTTATTACTTTATTTAAATATTTTTATTATACTACATTTGCTTTTTTGTATTTTA
66 GTATTA-TTTTTTATTACTTTATTTTAATATTTTTATTATACTACATTTGC-TTTTTGTATTTTA
15907566 ATATTATTACTATTATCAT
129 ATATTATTACTATTATCAT
* * * *
15907585 TTTTATTATTAATATTATTGTGTATTTTTATTATATATGTGTATGTATATGTATATATTTATATA
1 TATTATTATTAATATTAGTGTGTATTTTTATTATATATGTATATGTATA--TATATATTTATACA
* * * *
15907650 TAGTATTATTCTTTATTACTTTATTTTAATATTCTTA-T-TA-T--ATTTGCTTTTTGGATTTCA
64 TAGTATTATTTTTTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTTGTATTTTA
* *
15907710 ATAGTATTAC---TATGAT
129 ATATTATTACTATTATCAT
* * * ** *
15907726 TATTATTATTAATATTAGTGTATATTTTTATTATATAAGCATAAATATATATGTATTTAT--ATA
1 TATTATTATTAATATTAGTGTGTATTTTTATTATATATGTATATGTATATATATATTTATACATA
* * * * *
15907789 GTAATATTTTTAATTACCTTATTTTAACATTATTATTATA
66 GTATTATTTTTTATTACTTTATTTTAATATTTTTATTATA
15907829 TTATACACCT
Statistics
Matches: 351, Mismatches: 31, Indels: 26
0.86 0.08 0.06
Matches are distributed among these distances:
137 32 0.09
138 1 0.00
139 12 0.03
141 46 0.13
144 20 0.06
145 50 0.14
146 57 0.16
147 85 0.24
148 2 0.01
149 4 0.01
150 27 0.08
151 15 0.04
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (147 bp):
TATTATTATTAATATTAGTGTGTATTTTTATTATATATGTATATGTATATATATATTTATACATA
GTATTATTTTTTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTTGTATTTTAAT
ATTATTACTATTATCAT
Found at i:15908159 original size:22 final size:20
Alignment explanation
Indices: 15908132--15908172 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
15908122 TTTTATATGA
*
15908132 TTCATTAATTCTATTTTATTAT
1 TTCATT-ATT-TATTTGATTAT
15908154 TTCATTATTTATTTGATTA
1 TTCATTATTTATTTGATTA
15908173 CACTTTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 3 0.17
22 6 0.33
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.63
Consensus pattern (20 bp):
TTCATTATTTATTTGATTAT
Found at i:15911558 original size:10 final size:11
Alignment explanation
Indices: 15911539--15911571 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
15911529 TTGATATGTT
15911539 AATGAAGAGAA
1 AATGAAGAGAA
15911550 AAT-AAGAGAA
1 AATGAAGAGAA
*
15911560 AGTGAAGAGAA
1 AATGAAGAGAA
15911571 A
1 A
15911572 TAGTGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:15913337 original size:46 final size:46
Alignment explanation
Indices: 15913289--15913516 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
15913279 GCTCTCTGAT
** * *
15913289 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
15913335 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
15913381 GGGAAATGAATAAGACCATGGTTGAAAGATACCGTGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
15913427 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
15913473 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
15913517 TCAAAGATAA
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
45 1 0.01
46 159 0.99
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:15913448 original size:92 final size:92
Alignment explanation
Indices: 15913299--15913511 Score: 345
Period size: 92 Copynumber: 2.3 Consensus size: 92
15913289 ATGAAATGTG
* *
15913299 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAACGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
* *
15913364 TACCATGGCAACATGACGGGAAATGAA
66 TACCATGGCAACATGACAGAAAATGAA
*
15913391 TAAGACCATGGTTGAAAGATACCGTGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
*
15913456 TACCATGGCAACATGACAGAAAATGAG
66 TACCATGGCAACATGACAGAAAATGAA
* * *
15913483 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
15913512 TCATGTCAAA
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 111 1.00
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.18
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAGAAAATGAA
Found at i:15917282 original size:15 final size:17
Alignment explanation
Indices: 15917257--15917289 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
15917247 TGAACAAAGA
15917257 CTGACAAAACC-CAATT
1 CTGACAAAACCTCAATT
15917273 CTGA-AAAACCTCAATT
1 CTGACAAAACCTCAATT
15917289 C
1 C
15917290 ACCCCTATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.42, C:0.30, G:0.06, T:0.21
Consensus pattern (17 bp):
CTGACAAAACCTCAATT
Found at i:15923925 original size:77 final size:77
Alignment explanation
Indices: 15923760--15923925 Score: 235
Period size: 77 Copynumber: 2.2 Consensus size: 77
15923750 TGATATTTTT
* * *
15923760 ATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGACGAGTTGAGCCTCGGGTCACGCGCC
1 ATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGACGAGTTGACCCTCGGGCCACACGCC
* *
15923825 GAGGTATTTTCA
66 GAGATATATTCA
* ** *
15923837 ATTTC-AGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGACCCTCGGGCCACATGC
1 ATTTCTA-TTTTTCAAAAAAATCAACTCATATTGCGAGAGACGAGTTGACCCTCGGGCCACACGC
15923901 CGAGATATATTCA
65 CGAGATATATTCA
15923914 ATTTCTATTTTT
1 ATTTCTATTTTT
15923926 TAATTTCTGC
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
76 1 0.01
77 76 0.97
78 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (77 bp):
ATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGACGAGTTGACCCTCGGGCCACACGCC
GAGATATATTCA
Found at i:15924123 original size:75 final size:74
Alignment explanation
Indices: 15923944--15924128 Score: 228
Period size: 74 Copynumber: 2.5 Consensus size: 74
15923934 GCTTTTCAAG
* * *
15923944 AAAATCAACTCATATTACGAGAGGTGAGTTGACCCTCGGGCCATACGCTGAGGTGTCTTCAATTT
1 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGCCACACGCTGAGGTATCTTCAATTT
*
15924009 ATGCTTCAA
66 ATGCTGCAA
* * * *
15924018 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTAGTTT
1 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGCCACACGCTGAGGTATCTTCA-ATT
* *
15924083 CTATTC-GCTA
65 -TATGCTGCAA
* * *
15924093 AAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCT
1 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
15924129 TTTAGTCTCT
Statistics
Matches: 96, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
74 55 0.57
75 37 0.39
76 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (74 bp):
AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGCCACACGCTGAGGTATCTTCAATTT
ATGCTGCAA
Found at i:15925829 original size:3 final size:3
Alignment explanation
Indices: 15925823--15926116 Score: 114
Period size: 3 Copynumber: 96.3 Consensus size: 3
15925813 TTACTTGAAC
15925823 TTA TTA TTA TTA TTA TTTA TTA TTA TTTA TTTA TTTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA -TTA -TTA -TTA TTA TTA TTA TTA
* * * ** *
15925872 TTA TTA TTA TTA TTA TTA TTA TT- TTG TTA ATA TTA CTA TTA CAA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
15925919 -TA TT- TTA TTT TTG TGTA TTTA TTTA TTCA TT- TTA TTT TTAA TTCA
1 TTA TTA TTA TTA TTA T-TA -TTA -TTA TT-A TTA TTA TTA TT-A TT-A
* ** *
15925964 TTA AT- TTA TTA TTA TTA ACA -TA TTC TTA TTA TT- TTA TTAA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA
* *
15926008 TTA GTA TTA GTA TTA TATA TTA GTGTA TT- TT- TTA TTA TATA TGTA
1 TTA TTA TTA TTA TTA T-TA TTA -T-TA TTA TTA TTA TTA T-TA T-TA
* * * *
15926053 -TA TGTA TATA TTT TTA -TA CATA GTA TTA TT- TT- TTA TTA TTA CT-
1 TTA T-TA T-TA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
15926096 TTA TT- TTA ATA TTT TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
15926117 ACTACATTTG
Statistics
Matches: 226, Mismatches: 38, Indels: 54
0.71 0.12 0.17
Matches are distributed among these distances:
2 27 0.12
3 144 0.64
4 51 0.23
5 4 0.02
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:15925876 original size:46 final size:46
Alignment explanation
Indices: 15925823--15926116 Score: 142
Period size: 44 Copynumber: 6.5 Consensus size: 46
15925813 TTACTTGAAC
15925823 TTATTATTATTATTATTTATTATTATTTATTTATTTATTATTATTA
1 TTATTATTATTATTATTTATTATTATTTATTTATTTATTATTATTA
* *
15925869 TTATTATTATTATTA-TTATTATTATTT-TGTTA-ATATTACTATTA
1 TTATTATTATTATTATTTATTATTATTTAT-TTATTTATTATTATTA
** * * *
15925913 CAAATA-TATT-TTATTT-TTGTGTATTTATTTATTCATT-TTATT-
1 TTATTATTATTATTATTTATTAT-TATTTATTTATTTATTATTATTA
* * **
15925955 TT-TAATTCATTA--ATTTATTATTATTAACATATTCTTATTATT-TTA
1 TTATTATT-ATTATTATTTATTATTATTTATTTA-T-TTATTATTATTA
* *
15926000 TTAATGTATTAGTATTAGTATTATATATTAGTGTATTT-TTTATTATATATGTA
1 TT-AT-TATTATTATTA-T-TTAT-TATTA-TTTATTTATTTATTAT-TAT-TA
* ** * *
15926053 -TATGTATATATTTTTATACA-TAGTA-TTATTT-TTTATTATTACT-
1 TTAT-TAT-TATTATTATTTATTATTATTTATTTATTTATTATTATTA
*
15926096 TTATT-TTAATATT-TTTATTAT
1 TTATTATTATTATTATTTATTAT
15926117 ACTACATTTG
Statistics
Matches: 184, Mismatches: 36, Indels: 61
0.65 0.13 0.22
Matches are distributed among these distances:
40 2 0.01
41 8 0.04
42 19 0.10
43 26 0.14
44 28 0.15
45 21 0.11
46 28 0.15
47 4 0.02
48 7 0.04
49 1 0.01
50 9 0.05
51 13 0.07
52 13 0.07
53 5 0.03
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.63
Consensus pattern (46 bp):
TTATTATTATTATTATTTATTATTATTTATTTATTTATTATTATTA
Found at i:15926166 original size:257 final size:261
Alignment explanation
Indices: 15925876--15926410 Score: 1006
Period size: 257 Copynumber: 2.1 Consensus size: 261
15925866 TTATTATTAT
*
15925876 TATTATTATTATTATTATTTTGTTAATATTACTATTACAAATATATTTTATTTTTGTGTATTTAT
1 TATT-TTAATATTATTATTTTGTTAATATTACTATTACAAATATATTTTATTTTTGTGTATTTAT
15925941 TTATTCATTTTATTTTTAATTCATTAATTTATTATTATTAACATATTCTTATTA-TTTTATTAAT
65 TTATTCATTTTATTTTTAATTCATTAATTTATTATTATTAACATATTCTTATTATTTTTATTAAT
15926005 GTATTAGTATTAGTATTATATATTAGTGTA-TTTT-TTATTATATATGTATATGTATATATTTTT
130 GTATTAGTATTAGTATTATATATTAGTGTATTTTTATTATTATATATGTATATGTATATATTTTT
15926068 ATACATAGTATTA-TTTTTTATTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTT
195 ATACATAGTATTATTTTTTTATTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTT
15926132 TG
260 TG
*
15926134 TATTTTAATATTATTATTTTGTTAATATTACTATTACAATTATATTTTATTTTTGTGTATTTATT
1 TATTTTAATATTATTATTTTGTTAATATTACTATTACAAATATATTTTATTTTTGTGTATTTATT
*
15926199 TATTCATTTTATTTTTAATTCATTAATTTATTATTATTAACATATTCTTGTTATTTTTATTAATG
66 TATTCATTTTATTTTTAATTCATTAATTTATTATTATTAACATATTCTTATTATTTTTATTAATG
15926264 TATTAGTATTAGTATTATATATTAGTGTATTTTTATTATTATATATGTATATGTATATATTTTTA
131 TATTAGTATTAGTATTATATATTAGTGTATTTTTATTATTATATATGTATATGTATATATTTTTA
15926329 TACATAGTATTATTTTTTTATTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTT
196 TACATAGTATTATTTTTTTATTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTT
15926394 G
261 G
15926395 TATTTTAATATTATTA
1 TATTTTAATATTATTA
15926411 CTATTATCAT
Statistics
Matches: 270, Mismatches: 3, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
257 111 0.41
258 44 0.16
259 4 0.01
260 42 0.16
261 69 0.26
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (261 bp):
TATTTTAATATTATTATTTTGTTAATATTACTATTACAAATATATTTTATTTTTGTGTATTTATT
TATTCATTTTATTTTTAATTCATTAATTTATTATTATTAACATATTCTTATTATTTTTATTAATG
TATTAGTATTAGTATTATATATTAGTGTATTTTTATTATTATATATGTATATGTATATATTTTTA
TACATAGTATTATTTTTTTATTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTT
G
Found at i:15926292 original size:27 final size:24
Alignment explanation
Indices: 15926256--15926319 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
15926246 TTGTTATTTT
15926256 TATTAATGTATTAGTATTAGTATTATA
1 TATTAATGTATT--T-TTAGTATTATA
* *
15926283 TATTAGTGTATTTTTATTATTATA
1 TATTAATGTATTTTTAGTATTATA
15926307 TATGTATATGTAT
1 TAT-TA-ATGTAT
15926320 ATATTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
24 13 0.41
25 3 0.09
26 5 0.16
27 11 0.34
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (24 bp):
TATTAATGTATTTTTAGTATTATA
Found at i:15926634 original size:150 final size:149
Alignment explanation
Indices: 15926276--15926817 Score: 659
Period size: 150 Copynumber: 3.7 Consensus size: 149
15926266 TTAGTATTAG
15926276 TATTATATATTA--GTGTATTTTTATTAT-TATA--TATGTATATGTATATATTTTTATACATAG
1 TATTA-ATATTAGTGTGTATTTTTATTATATATATGTATGTATATGTATATA--TTTATACATAG
15926336 TATTATTTTTTTATTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTTGTATTTT
63 TATTA---TTTT-TTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTTGTATTTT
15926401 AATATTATTACTATTATCATTATTATTAT
124 AATATTATTACTATTATCA-T-TT-TTAT
* * *
15926430 TATTAATATTAGTGTGTATTTTTATTATATATGTATATGTATATGAATATATTTATACATAGTAT
1 TATTAATATTAGTGTGTATTTTTATTATATATATGTATGTATATGTATATATTTATACATAGTAT
*
15926495 TATTTTTTATTACTTTATTTAAATATTTTTATTATACTACATTTGCTTTTTTGTATTTTAATATT
66 TATTTTTTATTACTTTATTTTAATATTTTTATTATACTACATTTGC-TTTTTGTATTTTAATATT
15926560 ATTACTATTATCATTTTTAT
130 ATTACTATTATCATTTTTAT
* *
15926580 TATTAATATTAGTGTGTATTTTTATTATATATATGTATGCATATGTATATATTTATATATAGTAT
1 TATTAATATTAGTGTGTATTTTTATTATATATATGTATGTATATGTATATATTTATACATAGTAT
* * * * *
15926645 TATTCTTTATTACTTTATTTTAATATTCTTA-T-TA-T--ATTTGCTTTTTGGATTTCAATAGTA
66 TATTTTTTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTTGTATTTTAATATTA
* *
15926705 TTACTATTATTATTATTAT
131 TTACTATTATCATTTTTAT
* * * * * *
15926724 TATTAATATTAGTATATA-TTTTA-T-TATATATGCA--TATATATATGTATTTAT--ATAGTAA
1 TATTAATATTAGTGTGTATTTTTATTATATATATGTATGTATATGTATATATTTATACATAGTAT
* * * *
15926782 TATTTTTAATTACCTTATTTTAACATTATTATTATA
66 TATTTTTTATTACTTTATTTTAATATTTTTATTATA
15926818 TTATACACTT
Statistics
Matches: 352, Mismatches: 28, Indels: 31
0.86 0.07 0.08
Matches are distributed among these distances:
137 32 0.09
138 1 0.00
139 16 0.05
141 9 0.03
142 1 0.00
143 5 0.01
144 49 0.14
145 6 0.02
147 1 0.00
148 2 0.01
149 1 0.00
150 92 0.26
151 2 0.01
152 40 0.11
153 41 0.12
154 5 0.01
155 15 0.04
156 19 0.05
158 15 0.04
ACGTcount: A:0.31, C:0.05, G:0.06, T:0.58
Consensus pattern (149 bp):
TATTAATATTAGTGTGTATTTTTATTATATATATGTATGTATATGTATATATTTATACATAGTAT
TATTTTTTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTTGTATTTTAATATTA
TTACTATTATCATTTTTAT
Found at i:15926717 original size:3 final size:3
Alignment explanation
Indices: 15926703--15926750 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
15926693 ATTTCAATAG
* * *
15926703 TAT TAC TAT TAT TAT TAT TAT TAT TAA TAT TAG TAT ATAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
15926748 TAT
1 TAT
15926751 ATATGCATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
2 2 0.05
3 32 0.86
4 3 0.08
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:15926890 original size:3 final size:3
Alignment explanation
Indices: 15926876--15927088 Score: 59
Period size: 3 Copynumber: 71.3 Consensus size: 3
15926866 TTAATTTAAC
* * * * * *
15926876 TTA TTAA TTA TTA TTA TCA TTA TCA CTA TTG TTA TTA CT- TTA CTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
15926921 TCA -TA ATA TAA TGTA TTA TTA ATA TTA CTT- TTA TT- TTCA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TT-A TTA TTA
* * * * ** *
15926966 TTA TTA TTA CTA TTA TTCT TTA TTG TCA TGG TTA TTA TGT- TTA TTT
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * * * *
15927012 TTA -TA GCTA TTA TT- TT- TTA TCA CTA ATA TTA CTA TTG TTA -TA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
15927054 TTTA TTA TTA TTA GTT- TTA TTA TAA TTA TTA TTA T
1 -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA T
15927089 AGCTTTCTTT
Statistics
Matches: 148, Mismatches: 44, Indels: 36
0.65 0.19 0.16
Matches are distributed among these distances:
2 17 0.11
3 113 0.76
4 18 0.12
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:15928243 original size:46 final size:46
Alignment explanation
Indices: 15928176--15928524 Score: 456
Period size: 46 Copynumber: 7.6 Consensus size: 46
15928166 TGCTTCTGAA
* *
15928176 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAATATGAC
* *
15928222 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAATATGAC
* *
15928268 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAATATGAC
* **
15928314 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAATATGAC
* * * *
15928360 ATGAAA-AAATAAGACAATGGTTGAAAGATACCATGGCAACAT--C
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAATATGAC
* * *
15928403 ACGAAAATGAAG-AAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATG-AAATG-AGTAAGACCATGGTTGAAAGATACCATGGCAATATGAC
** *
15928450 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAATATGAC
*
15928496 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAGTAAGACCATGGTTGAAAGA
15928525 CATTATGGCA
Statistics
Matches: 274, Mismatches: 22, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
43 3 0.01
44 3 0.01
45 62 0.23
46 203 0.74
47 3 0.01
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAATATGAC
Found at i:15928511 original size:182 final size:182
Alignment explanation
Indices: 15928186--15928524 Score: 486
Period size: 182 Copynumber: 1.9 Consensus size: 182
15928176 ATGAAATGTG
* * * * *
15928186 TAAGACCATGGTTGAAAGATACCATGGCAATATGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACAATGGTTGAAAGATACCATGGCAACATCAGA-GAAATGAGTAAGACCATGGTTGAAAGA
* * *** * *
15928251 TACCATGGCAATATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATATGATAT
65 TACCATGGCAATATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* *
15928316 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAAA
130 GAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACGTGACATGAAAAAA
15928369 TAAGACAATGGTTGAAAGATACCATGGCAACATCACGA-AAATGAAG-AAGACCATGGTTGAAAG
1 TAAGACAATGGTTGAAAGATACCATGGCAACATCA-GAGAAATG-AGTAAGACCATGGTTGAAAG
*
15928432 ATACCATGGCAATGTAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACA
64 ATACCATGGCAATATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACA
15928497 -GAAAATGAGTAAGACCATAGTTGAAAGA
129 TG-AAATGAGTAAGACCATAGTTGAAAGA
15928525 CATTATGGCA
Statistics
Matches: 138, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
181 1 0.01
182 103 0.75
183 33 0.24
184 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.21
Consensus pattern (182 bp):
TAAGACAATGGTTGAAAGATACCATGGCAACATCAGAGAAATGAGTAAGACCATGGTTGAAAGAT
ACCATGGCAATATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATG
AAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACGTGACATGAAAAAA
Found at i:15928803 original size:16 final size:17
Alignment explanation
Indices: 15928782--15928814 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15928772 ATAATGGTGC
*
15928782 ACGAAAT-ATTGATATA
1 ACGAAATGAATGATATA
15928798 ACGAAATGAATGATATA
1 ACGAAATGAATGATATA
15928815 TGCTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.06, G:0.15, T:0.27
Consensus pattern (17 bp):
ACGAAATGAATGATATA
Found at i:15929435 original size:37 final size:37
Alignment explanation
Indices: 15929385--15929456 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
15929375 TGTTTTAACA
15929385 ATGTTTGGTATTGTGATTAATCTTTTCATTTCGAGTG
1 ATGTTTGGTATTGTGATTAATCTTTTCATTTCGAGTG
15929422 ATGTTTGGTATTGTGATTAATCTTTTCATTTCGAG
1 ATGTTTGGTATTGTGATTAATCTTTTCATTTCGAG
15929457 CTTTGCTCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.19, C:0.08, G:0.21, T:0.51
Consensus pattern (37 bp):
ATGTTTGGTATTGTGATTAATCTTTTCATTTCGAGTG
Found at i:15930113 original size:44 final size:44
Alignment explanation
Indices: 15930050--15930149 Score: 101
Period size: 44 Copynumber: 2.3 Consensus size: 44
15930040 TATCTCCTTA
* * * * * *
15930050 AAGTTGCAGTGGAACAGATTTAATCTACAAATCTTGCACCCCTG
1 AAGTTGCAATGGAACAGATTAAAGCTAAAAATCCTACACCCCTG
** * *
15930094 AAGTTGCAATGGAGTAGATTAAAGCTAAAAATCCTATACCCTTG
1 AAGTTGCAATGGAACAGATTAAAGCTAAAAATCCTACACCCCTG
*
15930138 ATGTTGCAATGG
1 AAGTTGCAATGG
15930150 GTCGGATTGA
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (44 bp):
AAGTTGCAATGGAACAGATTAAAGCTAAAAATCCTACACCCCTG
Found at i:15930280 original size:44 final size:44
Alignment explanation
Indices: 15930183--15930424 Score: 163
Period size: 44 Copynumber: 5.4 Consensus size: 44
15930173 AATCTTATCT
* * * *
15930183 CCCTGAAATTGTAGTGGAACAAGATGAAGCTACAAATTTTGTAC
1 CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATTCTATAC
* * *
15930227 CCTTAAAGTTGTAATGGAGCAAGATGAAGCTACAAATTCTATAC
1 CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATTCTATAC
** * *
15930271 CCCTGAAGTT-TCAGTGG-G-TTGATTGAAACTACAGTAGCGAATCT-TATC
1 CCCTGAAGTTGT-AGTGGAGCAAGA-TGAAGCTACA--A---ATTCTATA-C
** *
15930319 TCCCTGAAGTTACAGTGGAGCAAGATGAAGCTAC-AATTCCTATAT
1 -CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATT-CTATAC
* * * * *
15930364 CCCTAAAGTTGCAGTGAATC-AGATTGAAGCTACAAATCCTATAC
1 CCCTGAAGTTGTAGTGGAGCAAGA-TGAAGCTACAAATTCTATAC
*
15930408 CCCTGAAGTTGCAGTGG
1 CCCTGAAGTTGTAGTGG
15930425 GTCGAATTGA
Statistics
Matches: 154, Mismatches: 28, Indels: 32
0.72 0.13 0.15
Matches are distributed among these distances:
42 2 0.01
43 14 0.09
44 96 0.62
45 6 0.04
46 2 0.01
47 3 0.02
48 5 0.03
49 15 0.10
50 9 0.06
51 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATTCTATAC
Found at i:15930511 original size:138 final size:138
Alignment explanation
Indices: 15929983--15930512 Score: 519
Period size: 138 Copynumber: 3.8 Consensus size: 138
15929973 AGTGAAACCT
* * * *
15929983 CAAATCCTATACCCCTAAAGTTGTAGTGGG-CTAGATTGAAATC-ACCATAGCAAATCTTATCTC
1 CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGA-ATTG-AATCTACCATAGCGAATCTTATCTC
* * * * * * * * *
15930046 CTTAAAGTTGCAGTGGAAC-AGATTTAATCTACAAA-TCT-TGCACCCCTGAAGTTGCAATGGAG
64 CCTGAAGTTACAGTGGAGCAAGA-TGAAGCTACAAATTCTAT--ACCCTTAAAGTTGCAAT-GAA
*
15930108 T-AGATTAAAGCTA
125 TCAGATTGAAGCTA
* * * * *
15930121 AAAATCCTATACCCTTGATGTTGCAATGGGTCGGATTGAATCTACCATAAG-GAATCTTATCTCC
1 CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTGAATCTACCAT-AGCGAATCTTATCTCC
* ** * * * * * *
15930185 CTGAAATTGTAGTGGAACAAGATGAAGCTACAAATTTTGTACCCTTAAAGTTGTAATGGAGCAAG
65 CTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATTCTATACCCTTAAAGTTGCAATGAATC-AG
15930250 A-TGAAGCTA
129 ATTGAAGCTA
* * * *
15930259 CAAATTCTATACCCCTGAAGTTTCAGTGGGTTG-ATTGAAACTA-CAGTAGCGAATCTTATCTCC
1 CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTGAATCTACCA-TAGCGAATCTTATCTCC
*
15930322 CTGAAGTTACAGTGGAGCAAGATGAAGCTAC-AATTCCTATATCCC-TAAAGTTGCAGTGAATCA
65 CTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATT-CTATA-CCCTTAAAGTTGCAATGAATCA
15930385 GATTGAAGCTA
128 GATTGAAGCTA
*
15930396 CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTGAATCTACCATAGCGAATCTTATAT-CC
1 CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTGAATCTACCATAGCGAATCTTATCTCCC
* * * *
15930460 TGGAAGTTACAGTGGAGTAAGATAAAGCTACAAACTCTATACCCTTGAAGTTG
66 T-GAAGTTACAGTGGAGCAAGATGAAGCTACAAATTCTATACCCTTAAAGTTG
15930513 TAAGGGGTTG
Statistics
Matches: 324, Mismatches: 50, Indels: 36
0.79 0.12 0.09
Matches are distributed among these distances:
136 11 0.03
137 115 0.35
138 181 0.56
139 16 0.05
140 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (138 bp):
CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTGAATCTACCATAGCGAATCTTATCTCCC
TGAAGTTACAGTGGAGCAAGATGAAGCTACAAATTCTATACCCTTAAAGTTGCAATGAATCAGAT
TGAAGCTA
Found at i:15930513 original size:275 final size:276
Alignment explanation
Indices: 15929983--15930515 Score: 632
Period size: 275 Copynumber: 1.9 Consensus size: 276
15929973 AGTGAAACCT
*
15929983 CAAATCCTATACCCCTAAAGTTGTAGTGGGCTAGATTGAAATCACCATAGCAAATCTTATCTCCT
1 CAAATCCTATACCCCTAAAGTTGTAGTGGGCTAGATTGAAATCACCATAGCAAATCTTATCTCCC
* * * * * * *
15930048 TAAAGTTGCAGTGGAACAGATTTAATCTACAAATCTTGCACCCCTGAAGTTGCAATGGAGTAGAT
66 TAAAGTTACAGTGGAACAGATTGAAGCTACAAATCCTACACCCCTAAAGTTGCAATGGAATAGAT
* * *
15930113 TAAAGCTAAAAATCCTATACCCTTGATGTTGCAATGGGTCGGATTGAATCTACCATAAGGAATCT
131 TAAAGCTAAAAATCCTATACCCCTGAAGTTGCAATGGGTCGAATTGAATCTACCATAAGGAATCT
* ** * * * *
15930178 TATCTCCCTGAAATTGTAGTGGAACAAGATGAAGCTACAAATTTTGTACCCTTAAAGTTGTAATG
196 TATATCCCTGAAATTACAGTGGAACAAGATAAAGCTACAAACTCTATACCCTTAAAGTTGTAATG
15930243 GAGCAAGATGAAGCTA
261 GAGCAAGATGAAGCTA
* * * *
15930259 CAAATTCTATACCCCTGAAGTT-TCAGTGGG-TTGATTGAAA-CTA-CAGTAGCGAATCTTATCT
1 CAAATCCTATACCCCTAAAGTTGT-AGTGGGCTAGATTGAAATC-ACCA-TAGCAAATCTTATCT
* * * * * *
15930320 CCCTGAAGTTACAGTGGAGCAAGA-TGAAGCTACAATTCCTATATCCCTAAAGTTGCAGT-GAAT
63 CCCTAAAGTTACAGTGGAAC-AGATTGAAGCTACAAATCCTACACCCCTAAAGTTGCAATGGAAT
* * *
15930383 CAGATTGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTGAATCTACCAT-AGC
127 -AGATTAAAGCTAAAAATCCTATACCCCTGAAGTTGCAATGGGTCGAATTGAATCTACCATAAG-
* ** *
15930447 GAATCTTATAT-CCTGGAAGTTACAGTGGAGTAAGATAAAGCTACAAACTCTATACCCTTGAAGT
190 GAATCTTATATCCCT-GAAATTACAGTGGAACAAGATAAAGCTACAAACTCTATACCCTTAAAGT
15930511 TGTAA
254 TGTAA
15930516 GGGGTTGAAT
Statistics
Matches: 215, Mismatches: 35, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
274 11 0.05
275 175 0.81
276 29 0.13
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (276 bp):
CAAATCCTATACCCCTAAAGTTGTAGTGGGCTAGATTGAAATCACCATAGCAAATCTTATCTCCC
TAAAGTTACAGTGGAACAGATTGAAGCTACAAATCCTACACCCCTAAAGTTGCAATGGAATAGAT
TAAAGCTAAAAATCCTATACCCCTGAAGTTGCAATGGGTCGAATTGAATCTACCATAAGGAATCT
TATATCCCTGAAATTACAGTGGAACAAGATAAAGCTACAAACTCTATACCCTTAAAGTTGTAATG
GAGCAAGATGAAGCTA
Found at i:15930614 original size:93 final size:92
Alignment explanation
Indices: 15930359--15930615 Score: 277
Period size: 93 Copynumber: 2.7 Consensus size: 92
15930349 CTACAATTCC
* * *
15930359 TATATCCCTAAAGTTGCAGTGAATC-AGATTGAAGCTACAAATCCTATACCCCTGAAGTTGCAGT
1 TATAT-CCTAAAGTTGCAGTGGAGCAAG-TTGAAGCTAC-AATCCTATACCCATGAAGTTGCAGT
* * *
15930423 GGGTCGAATTGAATCTACCATAGCGAATCT
63 GGGTTGAATTGAAGCTACAATAGCGAATCT
* * * * * * * *
15930453 TATATCCTGGAAGTTACAGTGGAGTAAGATAAAGCTACAAACTCTATACCCTTGAAGTTGTAAG-
1 TATATCCT-AAAGTTGCAGTGGAGCAAGTTGAAGCTACAATC-CTATACCCATGAAGTTG-CAGT
15930517 GGGTTGAA-TGAAGCTACAATAGCGAATCT
63 GGGTTGAATTGAAGCTACAATAGCGAATCT
* *
15930546 TATCTTCCTAAAATTGCAGTGGAGCAAGTTGAAGCTACAATTCCTATACCCATGAAGTTGCAGTG
1 TAT-ATCCTAAAGTTGCAGTGGAGCAAGTTGAAGCTACAA-TCCTATACCCATGAAGTTGCAGTG
15930611 GGTTG
64 GGTTG
15930616 GTATAAAGCT
Statistics
Matches: 133, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
92 2 0.02
93 75 0.56
94 52 0.39
95 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (92 bp):
TATATCCTAAAGTTGCAGTGGAGCAAGTTGAAGCTACAATCCTATACCCATGAAGTTGCAGTGGG
TTGAATTGAAGCTACAATAGCGAATCT
Found at i:15936638 original size:26 final size:26
Alignment explanation
Indices: 15936602--15936711 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
15936592 TGATACAAAT
15936602 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
15936628 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15936654 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15936680 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15936706 TGATAA
1 TGATAA
15936712 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:15938372 original size:27 final size:27
Alignment explanation
Indices: 15938331--15938443 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
15938321 GAGGAAGCGT
*
15938331 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15938358 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15938385 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
15938413 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
15938439 TCTGG
1 TCTGG
15938444 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:15938436 original size:54 final size:54
Alignment explanation
Indices: 15938329--15938443 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
15938319 TGGAGGAAGC
*
15938329 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
15938383 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
15938437 GTTCTGG
1 GTTCTGG
15938444 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:15942464 original size:13 final size:13
Alignment explanation
Indices: 15942446--15942470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15942436 TAATAGGATA
15942446 TTATGAGATATTG
1 TTATGAGATATTG
15942459 TTATGAGATATT
1 TTATGAGATATT
15942471 ATTTATTAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TTATGAGATATTG
Found at i:15942483 original size:56 final size:55
Alignment explanation
Indices: 15942397--15942547 Score: 216
Period size: 56 Copynumber: 2.7 Consensus size: 55
15942387 GGGTGTTAGA
15942397 ATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATAGGATATTAT-GAG
1 ATATTATTAT-GGATATTATCTTTTAGCAATTTGATTCCTAATAGGATATTATAG-G
* * *
15942453 ATATTGTTATGAGATATTAT-TTATTAGCAATTTGATTTCTAATATGATATTATAGG
1 ATATTATTATG-GATATTATCTT-TTAGCAATTTGATTCCTAATAGGATATTATAGG
15942509 ATATTATTATGGCATATTATCTTTTAGCAATTTGATTCC
1 ATATTATTATGG-ATATTATCTTTTAGCAATTTGATTCC
15942548 CGCGTAACTA
Statistics
Matches: 85, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
55 4 0.05
56 78 0.92
57 3 0.04
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.47
Consensus pattern (55 bp):
ATATTATTATGGATATTATCTTTTAGCAATTTGATTCCTAATAGGATATTATAGG
Found at i:15942956 original size:24 final size:23
Alignment explanation
Indices: 15942930--15942997 Score: 91
Period size: 24 Copynumber: 2.9 Consensus size: 23
15942920 GTAAAAAGGA
*
15942930 AAAAGGGAAAAAAAAGGAAACTT
1 AAAAGAGAAAAAAAAGGAAACTT
*
15942953 AAAAGAAGAGAAAAAAGGAAACTT
1 AAAAG-AGAAAAAAAAGGAAACTT
*
15942977 AAAAGAAAAGAAAAAAGGAAA
1 AAAAGAGAA-AAAAAAGGAAA
15942998 AAATACTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
23 7 0.18
24 32 0.82
ACGTcount: A:0.71, C:0.03, G:0.21, T:0.06
Consensus pattern (23 bp):
AAAAGAGAAAAAAAAGGAAACTT
Found at i:15943457 original size:31 final size:31
Alignment explanation
Indices: 15943422--15943506 Score: 75
Period size: 31 Copynumber: 2.8 Consensus size: 31
15943412 TTATTTAAAT
15943422 GTATATAATTAAATCAAAATTAAAGCTTT-AA
1 GTATATAATTAAATCAAAATTAAAG-TTTCAA
* * * * * *
15943453 GTATACATTTGAACCAAAATTAGAGTTTCAC
1 GTATATAATTAAATCAAAATTAAAGTTTCAA
* *
15943484 CTATATAATTAGATC-AAATTAAA
1 GTATATAATTAAATCAAAATTAAA
15943507 ATTTACGTAT
Statistics
Matches: 40, Mismatches: 13, Indels: 3
0.71 0.23 0.05
Matches are distributed among these distances:
30 10 0.25
31 30 0.75
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (31 bp):
GTATATAATTAAATCAAAATTAAAGTTTCAA
Found at i:15961011 original size:34 final size:34
Alignment explanation
Indices: 15960964--15961032 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
15960954 TATGTTTCTG
15960964 TACATTATCTAACCTTAATTCCCTTGATAATTTT
1 TACATTATCTAACCTTAATTCCCTTGATAATTTT
* *
15960998 TACATTATTTAACCTTAATTCCCTTGATAGTTTT
1 TACATTATCTAACCTTAATTCCCTTGATAATTTT
15961032 T
1 T
15961033 TCTTTGTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (34 bp):
TACATTATCTAACCTTAATTCCCTTGATAATTTT
Found at i:15973016 original size:23 final size:23
Alignment explanation
Indices: 15972982--15973027 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
15972972 ATAGATTATT
15972982 TCAAATACTGATATGTGACATGA
1 TCAAATACTGATATGTGACATGA
*
15973005 TCAAATATTGATATGTGACATGA
1 TCAAATACTGATATGTGACATGA
15973028 ATGTAAGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (23 bp):
TCAAATACTGATATGTGACATGA
Found at i:15981009 original size:20 final size:23
Alignment explanation
Indices: 15980986--15981036 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
15980976 CAAAAAATAT
15980986 TTTAAA-AACTTAA-AT-ATAAA
1 TTTAAATAACTTAATATAATAAA
*
15981006 TTTAAATAATTTAATATAATAAA
1 TTTAAATAACTTAATATAATAAA
15981029 TTATAAAT
1 TT-TAAAT
15981037 TAATCCAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 6 0.23
21 6 0.23
22 2 0.08
23 7 0.27
24 5 0.19
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
TTTAAATAACTTAATATAATAAA
Found at i:15983342 original size:2 final size:2
Alignment explanation
Indices: 15983335--15983364 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15983325 TGGCCGCCAG
15983335 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15983365 AAAGTACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.