Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 70 of 345
Found at i:19133140 original size:26 final size:26
Alignment explanation
Indices: 19133111--19133218 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
19133101 TGGTACAAAT
19133111 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
19133137 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
19133163 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
19133189 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
19133215 TGAT
1 TGAT
19133219 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:19134685 original size:28 final size:26
Alignment explanation
Indices: 19134654--19134717 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
19134644 AATTACTTGA
*
19134654 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTA-G-ATGCAAAATTACTGTT
* *
19134682 ATACCTCTAGGTGCAAAATTACTGTT
1 ATACCCCTAGATGCAAAATTACTGTT
19134708 ATACCCCTAG
1 ATACCCCTAG
19134718 GGTTAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 23 0.72
27 1 0.03
28 8 0.25
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACTGTT
Found at i:19134864 original size:27 final size:26
Alignment explanation
Indices: 19134822--19134940 Score: 121
Period size: 27 Copynumber: 4.4 Consensus size: 26
19134812 AGGAAGCGTC
*
19134822 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTAAT
* * **
19134849 ATGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTAAT
* *
19134876 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTAAT
*
19134903 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACAT-TATCTAAT
*
19134930 TTGGTGGCTCT
1 CTGGTGGCTCT
19134941 ACTACAATAT
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.05
27 70 0.92
28 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTAAT
Found at i:19134908 original size:54 final size:54
Alignment explanation
Indices: 19134822--19134938 Score: 180
Period size: 54 Copynumber: 2.2 Consensus size: 54
19134812 AGGAAGCGTC
*
19134822 CTGGTGGCTATGCCACAATTATCTAATATGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATATGGTGGCTCTACCACATATATCTATT
* * * *
19134876 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTAATATGGTGGCTCTACCACATATATCTATT
*
19134930 TTGGTGGCT
1 CTGGTGGCT
19134939 CTACTACAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATATGGTGGCTCTACCACATATATCTATT
Found at i:19134959 original size:54 final size:54
Alignment explanation
Indices: 19134822--19134979 Score: 160
Period size: 54 Copynumber: 2.9 Consensus size: 54
19134812 AGGAAGCGTC
* * * * *
19134822 CTGGTGGCTATGCCAC-AATTATCTAATATGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATACCACGAA-TATCTGATCTGGTGGCTCTGCCACATATATCTATT
* *
19134876 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATACCACGAATATCTGATCTGGTGGCTCTGCCACATATATCTATT
* * * * * *
19134930 TTGGTGGCTCTACTAC-AATATCTGTATCTGGTGACTTTGTCACA-ATATCT
1 CTGGTGGCTATACCACGAATATCTG-ATCTGGTGGCTCTGCCACATATATCT
19134980 GGCAGTCTCG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 13 0.15
54 75 0.84
55 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATACCACGAATATCTGATCTGGTGGCTCTGCCACATATATCTATT
Found at i:19134961 original size:27 final size:27
Alignment explanation
Indices: 19134850--19134962 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 27
19134840 TTATCTAATA
19134850 TGGTGGCTCTACCACATATATCTGTTC
1 TGGTGGCTCTACCACATATATCTGTTC
* * *
19134877 TGGTGGCTATGCCACGAT-TATCTGATC
1 TGGTGGCTCTACCAC-ATATATCTGTTC
* * *
19134904 TGGTGGCTCTGCCACATATATCTATTT
1 TGGTGGCTCTACCACATATATCTGTTC
*
19134931 TGGTGGCTCTACTACA-ATATCTGTATC
1 TGGTGGCTCTACCACATATATCTGT-TC
19134958 TGGTG
1 TGGTG
19134963 ACTTTGTCAC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
26 9 0.12
27 61 0.85
28 2 0.03
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
TGGTGGCTCTACCACATATATCTGTTC
Found at i:19140264 original size:26 final size:26
Alignment explanation
Indices: 19140235--19140341 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
19140225 TGGTACAAAT
19140235 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
19140261 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
19140287 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
19140312 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
19140338 TGAT
1 TGAT
19140342 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 23 0.31
26 52 0.69
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:19140307 original size:51 final size:52
Alignment explanation
Indices: 19140235--19140341 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
19140225 TGGTACAAAT
19140235 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
19140287 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
19140338 TGAT
1 TGAT
19140342 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 46 0.87
52 7 0.13
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:19141809 original size:28 final size:26
Alignment explanation
Indices: 19141778--19141841 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
19141768 AATTACTTGA
*
19141778 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTA-G-ATGCAAAATTACTGTT
* *
19141806 ATACCTCTAGGTGCAAAATTACTGTT
1 ATACCCCTAGATGCAAAATTACTGTT
19141832 ATACCCCTAG
1 ATACCCCTAG
19141842 GGTTAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 23 0.72
27 1 0.03
28 8 0.25
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACTGTT
Found at i:19141988 original size:27 final size:26
Alignment explanation
Indices: 19141946--19142104 Score: 167
Period size: 27 Copynumber: 5.9 Consensus size: 26
19141936 AGGAAGCGTC
*
19141946 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
19141973 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
19142000 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
19142027 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
* *
19142054 CTGGTGGCTCTACCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
* * * *
19142081 CTGGTGACTTTGTCACAATATCTG
1 CTGGTGGCTCTGCCACATTATCTG
19142105 GCAGCCTCGC
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.09
27 100 0.88
28 3 0.03
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:19142028 original size:54 final size:53
Alignment explanation
Indices: 19141946--19142086 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 53
19141936 AGGAAGCGTC
*
19141946 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTATT
*
19142000 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTATT
* * *
19142054 CTGGTGGCTCTACCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
19142087 ACTTTGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTATT
Found at i:19144934 original size:22 final size:21
Alignment explanation
Indices: 19144909--19144961 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
19144899 TGTAAATATC
*
19144909 TAAAATTTATGAAGTTAAAGTA
1 TAAAATTTA-GAAGTTAAAGAA
** *
19144931 TAAATATGGAGAAGTTGAAGAA
1 TAAA-ATTTAGAAGTTAAAGAA
19144953 TAAAATTTA
1 TAAAATTTA
19144962 AATTAAGTCA
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.51, C:0.00, G:0.17, T:0.32
Consensus pattern (21 bp):
TAAAATTTAGAAGTTAAAGAA
Found at i:19147897 original size:23 final size:24
Alignment explanation
Indices: 19147853--19147898 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
19147843 TTTAAAAAAA
* *
19147853 TTGAGTTTTTTTTACTTGTATATT
1 TTGAATTTTTTATACTTGTATATT
*
19147877 TTGAATTTTTTATCCTT-TATAT
1 TTGAATTTTTTATACTTGTATAT
19147899 ATATATTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.20, C:0.07, G:0.09, T:0.65
Consensus pattern (24 bp):
TTGAATTTTTTATACTTGTATATT
Found at i:19152592 original size:25 final size:25
Alignment explanation
Indices: 19152564--19152621 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
19152554 ATTTTTGACG
*
19152564 AAAAATTAAGTGTTAAAAATAAATT
1 AAAAATTAAGTATTAAAAATAAATT
* * **
19152589 AAAATTTAATTATTAAATTTAAATT
1 AAAAATTAAGTATTAAAAATAAATT
19152614 ATAAAATT
1 A-AAAATT
19152622 TATTTGGTAC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (25 bp):
AAAAATTAAGTATTAAAAATAAATT
Found at i:19152608 original size:13 final size:13
Alignment explanation
Indices: 19152588--19152623 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
19152578 AAAAATAAAT
19152588 TAAAATTTAATTA
1 TAAAATTTAATTA
*
19152601 TTAAATTTAAATTA
1 TAAAATTT-AATTA
19152615 TAAAATTTA
1 TAAAATTTA
19152624 TTTGGTACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAAAATTTAATTA
Found at i:19153157 original size:25 final size:26
Alignment explanation
Indices: 19153102--19153156 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
19153092 TACAAAAATA
*
19153102 AAAACATCTTCATAGTAATTTTTTTT
1 AAAACATCTTCATAGTAATATTTTTT
* **
19153128 AAAACATCTTTATTTTAATATTTTTT
1 AAAACATCTTCATAGTAATATTTTTT
19153154 AAA
1 AAA
19153157 CTAGTTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (26 bp):
AAAACATCTTCATAGTAATATTTTTT
Found at i:19153475 original size:37 final size:36
Alignment explanation
Indices: 19153412--19153519 Score: 93
Period size: 37 Copynumber: 3.1 Consensus size: 36
19153402 ATTCTAAAAA
*
19153412 TAATATTATTTTAATAGTTTAATATTAAATTAAATT
1 TAATATTATGTTAATAGTTTAATATTAAATTAAATT
*
19153448 TAATACTTATGTTAATAG--T-AT-TT-TATT-AATT
1 TAATA-TTATGTTAATAGTTTAATATTAAATTAAATT
* * * * *
19153479 TAATATTAAAGTGATTATTTTAATATTAAATTTAATT
1 TAATATT-ATGTTAATAGTTTAATATTAAATTAAATT
19153516 TAAT
1 TAAT
19153520 GTTTAGATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
30 2 0.04
31 15 0.26
32 3 0.05
33 3 0.05
34 4 0.07
35 3 0.05
36 8 0.14
37 19 0.33
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.53
Consensus pattern (36 bp):
TAATATTATGTTAATAGTTTAATATTAAATTAAATT
Found at i:19154793 original size:35 final size:35
Alignment explanation
Indices: 19154747--19154819 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
19154737 TTCGCCAGAT
*
19154747 TATTAATCTAAATAGGCATGACCAAGTAACTCCAC
1 TATTAATCTAAAAAGGCATGACCAAGTAACTCCAC
19154782 TATTAATCTAAAAAGGCATGACCAAGTAACTCCAC
1 TATTAATCTAAAAAGGCATGACCAAGTAACTCCAC
19154817 TAT
1 TAT
19154820 CCTGCAATCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (35 bp):
TATTAATCTAAAAAGGCATGACCAAGTAACTCCAC
Found at i:19167556 original size:17 final size:18
Alignment explanation
Indices: 19167536--19167569 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
19167526 CAAATCGAAA
19167536 AAAAAAACAAA-AAGGGT
1 AAAAAAACAAAGAAGGGT
*
19167553 AAAAAATCAAAGAAGGG
1 AAAAAAACAAAGAAGGG
19167570 GACTTACCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.68, C:0.06, G:0.21, T:0.06
Consensus pattern (18 bp):
AAAAAAACAAAGAAGGGT
Found at i:19173182 original size:19 final size:20
Alignment explanation
Indices: 19173155--19173195 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
19173145 TTTGTTTGCA
* *
19173155 TTCATTCATTTGCATTACAT
1 TTCATTCATGTGCATTAAAT
19173175 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
19173194 TT
1 TT
19173196 TGTGAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.49
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:19181243 original size:66 final size:66
Alignment explanation
Indices: 19181137--19181302 Score: 237
Period size: 66 Copynumber: 2.5 Consensus size: 66
19181127 CATTCATACA
* *
19181137 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAGTTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
*
19181202 T
66 C
* * * *
19181203 TCATTCATAACACGTTTAATTAAGAGCATTTGATTCATTTCGATCATACCATCCTAATTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
19181268 C
66 C
* *
19181269 ACATTCAT--CACATCTAGTTAGGAGCATTTGATTC
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTC
19181303 GACCATAGCA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
64 22 0.25
66 66 0.75
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (66 bp):
TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
C
Found at i:19181500 original size:44 final size:43
Alignment explanation
Indices: 19181437--19181585 Score: 169
Period size: 44 Copynumber: 3.5 Consensus size: 43
19181427 TTATAGATCC
*
19181437 TAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAAGGGCCT
1 TAACCCCCTAAGCAGTAGGGAAACAGATCGAA-GTGAAGGGCCT
* * * * **
19181481 TAACCCCCTAAGCAGTAGGGTAACAGGTTGAA-TTACA-GATCT
1 TAACCCCCTAAGCAGTAGGGAAACAGATCGAAGTGA-AGGGCCT
* *
19181523 TAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTT
1 TAACCCCCTAAGCAGTAGGGAAACAGATCGAAG-TGAAGGGCCT
19181567 TAA-CCCCTAAGCAGTAGGG
1 TAACCCCCTAAGCAGTAGGG
19181586 TAATAAGCTA
Statistics
Matches: 86, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 33 0.38
43 17 0.20
44 36 0.42
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (43 bp):
TAACCCCCTAAGCAGTAGGGAAACAGATCGAAGTGAAGGGCCT
Found at i:19181543 original size:86 final size:86
Alignment explanation
Indices: 19181393--19181628 Score: 305
Period size: 86 Copynumber: 2.7 Consensus size: 86
19181383 TTCACAAGCT
* * * *
19181393 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGCATTTATAGATCCTAACCCCCTAAGCAGTAGGGA
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTG-AATTACAGATCTTAACCCCCTAAGCAGTAGGGA
*
19181458 AACAGATCGAAGGCGAAGGGCC
65 AACAGATCGAAGACGAAGGGCC
* *
19181480 TTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTACAGATCTTAACCCCCTAAGCAGTAGGGAA
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTACAGATCTTAACCCCCTAAGCAGTAGGGAA
* * *
19181545 ACAGATCGAAGATGATGGGCT
66 ACAGATCGAAGACGAAGGGCC
* * * *
19181566 TTAA-CCCCTAAGCAGTAGGGTAATAAGCTAAATTTAC-GAGCCTTAACCCCCTAAGCTGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAA-TTACAGA-TCTTAACCCCCTAAGCAGTAGGG
19181629 TAATAGGTTG
Statistics
Matches: 131, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
85 26 0.20
86 77 0.59
87 28 0.21
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.20
Consensus pattern (86 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTACAGATCTTAACCCCCTAAGCAGTAGGGAA
ACAGATCGAAGACGAAGGGCC
Found at i:19181617 original size:43 final size:42
Alignment explanation
Indices: 19181393--19181631 Score: 151
Period size: 43 Copynumber: 5.6 Consensus size: 42
19181383 TTCACAAGCT
** * * *
19181393 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGCATTTATAGATCC
1 TTAACCCCCTAAGCAGTAGGGTAACAAG-CTAAATTA-CGAGCC
* * * *** * *
19181437 -TAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAAGGGCC
1 TTAACCCCCTAAGCAGTAGGGTAACA-AGCTAA-ATTACGAGCC
* * * *
19181480 TTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTAC-AGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAATTACGAG-CC
* * * * * * *
19181522 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT
1 TTAACCCCCTAAGCAGTAGGGTAACA-AGCTAA-ATTACGAGCC
*
19181566 TTAA-CCCCTAAGCAGTAGGGTAATAAGCTAAATTTACGAGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAA-TTACGAGCC
*
19181608 TTAACCCCCTAAGCTGTAGGGTAA
1 TTAACCCCCTAAGCAGTAGGGTAA
19181632 TAGGTTGAAA
Statistics
Matches: 146, Mismatches: 40, Indels: 19
0.71 0.20 0.09
Matches are distributed among these distances:
41 2 0.01
42 40 0.27
43 70 0.48
44 33 0.23
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (42 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAATTACGAGCC
Found at i:19189996 original size:41 final size:43
Alignment explanation
Indices: 19189935--19190032 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 43
19189925 TCTCATGAGC
* *
19189935 TTCAGTT-AACTCATATGAG-TTTTAGTTAACCCTAATGGG-T
1 TTCAGTTCAACTCTTACGAGTTTTTAGTTAACCCTAATGGGTT
* * *
19189975 TTCAGTTCAACTCTTACGAGTTTTTATTTAACCTTACTGGGTT
1 TTCAGTTCAACTCTTACGAGTTTTTAGTTAACCCTAATGGGTT
*
19190018 TTC-GTTCAGCTCTTA
1 TTCAGTTCAACTCTTA
19190033 TAAGCTTATG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
40 7 0.14
41 10 0.20
42 28 0.57
43 4 0.08
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.44
Consensus pattern (43 bp):
TTCAGTTCAACTCTTACGAGTTTTTAGTTAACCCTAATGGGTT
Found at i:19205717 original size:15 final size:15
Alignment explanation
Indices: 19205687--19205715 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
19205677 ACTATTAGTA
19205687 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
19205702 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
19205716 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:19206904 original size:127 final size:127
Alignment explanation
Indices: 19206651--19206954 Score: 461
Period size: 128 Copynumber: 2.4 Consensus size: 127
19206641 AGTCTAAGGC
* *
19206651 TTTTTCAGATACTACTGTAGCAAAAGA-CGGTCCACGTAGGAGC-TTTTTTCCGTAATTTTGCTG
1 TTTTTCAGATACTACTGTAGCAAAAGAGC-GTCCACGTGGGAGCTTTTTTTCCATAATTTTGCTG
* *
19206714 ACAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAAATTA
65 ACAATGCATCCTTCTTGAAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAAATTA
* * *
19206777 TTTTTTCCGATACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTTCCATACTTTTGCTG
1 -TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTCCATAATTTTGCTG
* * *
19206842 ACAATGCATCCTTCTTGAAGCGTTTTTGACATTATTTATTTAGAAACATCTTCT-TAAAATTA
65 ACAATGCATCCTTCTTGAAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAAATTA
* *
19206904 TTTTTCAGATATTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTTTC
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTC
19206955 GTAATTAATA
Statistics
Matches: 161, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
126 47 0.29
127 45 0.28
128 69 0.43
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (127 bp):
TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTCCATAATTTTGCTGA
CAATGCATCCTTCTTGAAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAAATTA
Found at i:19207133 original size:6 final size:7
Alignment explanation
Indices: 19207106--19207138 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
19207096 TAAACTCTAA
19207106 AAACCCT
1 AAACCCT
19207113 AAACCACT
1 AAACC-CT
19207121 AAACCCT
1 AAACCCT
19207128 -AACCCT
1 AAACCCT
19207134 AAACC
1 AAACC
19207139 AATCAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.45, C:0.42, G:0.00, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:19208894 original size:16 final size:14
Alignment explanation
Indices: 19208861--19208898 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
19208851 ATTATTTTTG
19208861 TTTTA-TTTTTATT
1 TTTTACTTTTTATT
19208874 TTTTACTTTTTCATT
1 TTTTACTTTTT-ATT
19208889 TCTTTACTTT
1 T-TTTACTTT
19208899 ATTTTCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.23
14 5 0.23
15 4 0.18
16 8 0.36
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTACTTTTTATT
Found at i:19210328 original size:21 final size:23
Alignment explanation
Indices: 19210299--19210340 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
19210289 CCCAAACCAG
*
19210299 AAACTCAAAATACAA-AAATATA
1 AAACTCAAAATAAAATAAATATA
19210321 AAAC-CAAAATAAAATAAATA
1 AAACTCAAAATAAAATAAATA
19210341 AATAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.17
Consensus pattern (23 bp):
AAACTCAAAATAAAATAAATATA
Found at i:19212029 original size:3 final size:3
Alignment explanation
Indices: 19212021--19212062 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
19212011 ACATTTTGTC
*
19212021 ATT ATT ATT ATT ATT ATT ATC ATT ATT ATT ATTT ATT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
19212063 TTTCTTTGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:19215517 original size:6 final size:6
Alignment explanation
Indices: 19215506--19215573 Score: 118
Period size: 6 Copynumber: 11.3 Consensus size: 6
19215496 ATACCAAATA
* *
19215506 AAACCC AAACCC AAATCC AAACCC AAACCC AAACCC AAACCC AAACTC
1 AAACCC AAACCC AAACCC AAACCC AAACCC AAACCC AAACCC AAACCC
19215554 AAACCC AAACCC AAACCC AA
1 AAACCC AAACCC AAACCC AA
19215574 TTATTATTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.51, C:0.46, G:0.00, T:0.03
Consensus pattern (6 bp):
AAACCC
Found at i:19218190 original size:30 final size:30
Alignment explanation
Indices: 19218154--19218214 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
19218144 AACAAAATAC
19218154 GCTTTTGTTCCATGTAAGAAAGAGAAGTGG
1 GCTTTTGTTCCATGTAAGAAAGAGAAGTGG
19218184 GCTTTTGTTCCATGTAAGAAAGAGAAGTGG
1 GCTTTTGTTCCATGTAAGAAAGAGAAGTGG
19218214 G
1 G
19218215 TGGGAGAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.30
Consensus pattern (30 bp):
GCTTTTGTTCCATGTAAGAAAGAGAAGTGG
Found at i:19223983 original size:18 final size:18
Alignment explanation
Indices: 19223808--19224090 Score: 133
Period size: 18 Copynumber: 15.3 Consensus size: 18
19223798 GAATAATTAT
* *
19223808 TTATTCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
* * *
19223826 TTGTTCGGTAACAATCAA
1 TTATTCAGTAACAATCAG
* * *
19223844 TTATTCAATAATAAACAG
1 TTATTCAGTAACAATCAG
*
19223862 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A---ATCAG
* * *
19223888 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
*
19223906 TTATTCAATAA-AATCAG
1 TTATTCAGTAACAATCAG
* * *
19223923 ATATTCAGTAACTATTAAG
1 TTATTCAGTAAC-AATCAG
* *
19223942 TTATTCAGTAGCAGTCA-
1 TTATTCAGTAACAATCAG
*
19223959 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAATCAG
** *
19223978 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAG
* *
19223996 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAG
*
19224014 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAATC-AG
* * * *
19224032 ATATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
* * *
19224050 TTA-TCCGATAACAGTCAA
1 TTATTCAG-TAACAATCAG
*
19224068 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAG
19224086 TTATT
1 TTATT
19224091 TTATACCTTT
Statistics
Matches: 199, Mismatches: 50, Indels: 32
0.71 0.18 0.11
Matches are distributed among these distances:
17 18 0.09
18 144 0.72
19 20 0.10
21 2 0.01
22 1 0.01
23 2 0.01
26 12 0.06
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:19224023 original size:72 final size:72
Alignment explanation
Indices: 19223889--19224090 Score: 200
Period size: 72 Copynumber: 2.8 Consensus size: 72
19223879 ATTGATCGGT
* * *
19223889 TATCCAGTAACAGTCAATTATTCA-ATAA-AATCAGA-TATTCAGTAACTATTAAGTTATTCAGT
1 TATCCAGTAACAATCAATTA-TCAGATAACAGTCA-ATTATTCAGTAA-TATTCAGTTATTCAGT
* *
19223951 AGCAGTC-AT
63 AACAGTCTAA
* * * *
19223960 TCATTCAGTGACAATCAGTTATTCAG-TAA-TGATCAATTATTCAGTAATATTCAGTTATTCAGT
1 T-ATCCAGTAACAATCAATTA-TCAGATAACAG-TCAATTATTCAGTAATATTCAGTTATTCAGT
19224023 AACAGTCTAA
63 AACAGTCTAA
* * *
19224033 TATCCAGTAACAGTCAATTATCCGATAACAGTCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAATCAATTATCAGATAACAGTCAATTATTCAGTAATATTCAGTTATT
19224091 TTATACCTTT
Statistics
Matches: 108, Mismatches: 16, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
71 4 0.04
72 88 0.81
73 16 0.15
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (72 bp):
TATCCAGTAACAATCAATTATCAGATAACAGTCAATTATTCAGTAATATTCAGTTATTCAGTAAC
AGTCTAA
Found at i:19224351 original size:45 final size:45
Alignment explanation
Indices: 19224259--19224496 Score: 352
Period size: 45 Copynumber: 5.3 Consensus size: 45
19224249 TCTGGAACAA
** * * * * *
19224259 TAACAGTAATAGTAGCAGTATTCAACACAC-AAGTGCTGAATCAG
1 TAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGG
* * *
19224303 TAACGGTAACAGTAACAATATTTGACACACAAAGTGCCGAATCGG
1 TAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGG
* * *
19224348 TAACGGTAACAGTAACAATATTCGACACACACAGTGCCGAATCGG
1 TAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGG
19224393 TAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGG
1 TAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGG
19224438 TAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGG
1 TAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGG
19224483 TAACAGTAGCAGTA
1 TAACAGTAGCAGTA
19224497 GCGGTAACAG
Statistics
Matches: 180, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
44 24 0.13
45 156 0.87
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.19
Consensus pattern (45 bp):
TAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGG
Found at i:19225127 original size:29 final size:30
Alignment explanation
Indices: 19225069--19225128 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
19225059 CATATTCATA
* *
19225069 ATTTATTTTATTTTTATTCAATTCATATTT
1 ATTTATTTTATTTTTATCCAATTCAAATTT
*
19225099 ATTTA-TTTATTTATTGTCCAA-TCAAATTT
1 ATTTATTTTATTT-TTATCCAATTCAAATTT
19225128 A
1 A
19225129 AAATCACTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (30 bp):
ATTTATTTTATTTTTATCCAATTCAAATTT
Found at i:19225283 original size:6 final size:6
Alignment explanation
Indices: 19225265--19225310 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
19225255 ACTTTTCCAA
* *
19225265 TCAATT T-ACATT TTAATT TCAATT TTAATT TCAATT TCAA-T TCAAT
1 TCAATT TCA-ATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAAT
19225311 AACAATTCAC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
5 6 0.18
6 27 0.79
7 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (6 bp):
TCAATT
Found at i:19225286 original size:18 final size:17
Alignment explanation
Indices: 19225265--19225306 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
19225255 ACTTTTCCAA
*
19225265 TCAATTTACATTTTAATT
1 TCAATTTA-ATTTCAATT
19225283 TCAATTTTAATTTCAATT
1 TCAA-TTTAATTTCAATT
19225301 TCAATT
1 TCAATT
19225307 CAATAACAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 16 0.73
19 4 0.18
ACGTcount: A:0.33, C:0.12, G:0.00, T:0.55
Consensus pattern (17 bp):
TCAATTTAATTTCAATT
Found at i:19225289 original size:12 final size:12
Alignment explanation
Indices: 19225274--19225310 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
19225264 ATCAATTTAC
19225274 ATTTTAATTTCA
1 ATTTTAATTTCA
19225286 ATTTTAATTTCA
1 ATTTTAATTTCA
*
19225298 ATTTCAA-TTCA
1 ATTTTAATTTCA
19225309 AT
1 AT
19225311 AACAATTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 6 0.25
12 18 0.75
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTTAATTTCA
Found at i:19226617 original size:2 final size:2
Alignment explanation
Indices: 19226612--19226646 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
19226602 TTTTTTACTT
19226612 TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19226647 ACAATAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:19226634 original size:17 final size:17
Alignment explanation
Indices: 19226612--19226644 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
19226602 TTTTTTACTT
19226612 TATATATATATATATAA
1 TATATATATATATATAA
19226629 TATATATATATATATA
1 TATATATATATATATA
19226645 TAACAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATATATATATATAA
Found at i:19228611 original size:42 final size:44
Alignment explanation
Indices: 19228555--19228761 Score: 222
Period size: 44 Copynumber: 4.8 Consensus size: 44
19228545 TAATCAAATA
** *
19228555 TCGATGCCATTGTCCCAGACAGGGTCTTACACG-AAATCA-AA-
1 TCGATGCCAACGTCCCAGACATGGTCTTACACGTAAATCATAAG
* * *
19228596 TACGATGCCAATGTCCCAAACATGGTCTTATACGTAAATCATAAG
1 T-CGATGCCAACGTCCCAGACATGGTCTTACACGTAAATCATAAG
* * *
19228641 TCGATGCCAACGTTCGAGACATGGTCTTACATGTAAATCATAAG
1 TCGATGCCAACGTCCCAGACATGGTCTTACACGTAAATCATAAG
* * * * * *
19228685 TCGATGCCAACGTCTCAGACGTGATCTTACATGCAAACCATAAG
1 TCGATGCCAACGTCCCAGACATGGTCTTACACGTAAATCATAAG
* * *
19228729 TCGATGCCAACGTCCTAGACGTGGTTTTACACG
1 TCGATGCCAACGTCCCAGACATGGTCTTACACG
19228762 ATAACACATA
Statistics
Matches: 140, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
41 1 0.01
42 28 0.20
43 6 0.04
44 104 0.74
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
TCGATGCCAACGTCCCAGACATGGTCTTACACGTAAATCATAAG
Found at i:19233602 original size:48 final size:48
Alignment explanation
Indices: 19233497--19233822 Score: 458
Period size: 48 Copynumber: 6.8 Consensus size: 48
19233487 TAAAGTACCA
* * * * *
19233497 ATGCCATGTCCCCGACATGGTCTTACATTA-TC-CACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCACCG
* * *
19233544 ATGGCATGTCCCAGACATGGTCTTACACAGACACATATATCATCACCA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
* *
19233592 ATGCTATGTCCCAAACATGGTCTTACACAGGCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
* *
19233640 ATGCCATGTCCCAGACACGGTCTTACACAGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
* * *
19233688 ATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCTCCA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
* *
19233736 ATGCCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
* *
19233784 ATGCCATGTCCCAGACACGGTCTTACATAGGCACATATA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATA
19233823 GCACGGTGTC
Statistics
Matches: 249, Mismatches: 28, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
46 1 0.00
47 26 0.10
48 222 0.89
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
Found at i:19233756 original size:144 final size:144
Alignment explanation
Indices: 19233497--19233818 Score: 506
Period size: 144 Copynumber: 2.2 Consensus size: 144
19233487 TAAAGTACCA
* * * * *
19233497 ATGCCATGTCCCCGACATGGTCTTACATTA-TC-CACATATCATCGCCGATGGCATGTCCCAGAC
1 ATGCCATGTCCCAGACACGGTCTTACA-TAGGCACACATATCATCACCGATGCCATGTCCCAGAC
*
19233560 ATGGTCTTACACAGACACATATATCATCACCAATGCTATGTCCCAAACATGGTCTTACACAGGCA
65 ATGGTCTTACACAGACACATATATCATCACCAATGCCATGTCCCAAACATGGTCTTACACAGGCA
*
19233625 CATATATCATCACCG
130 CACATATCATCACCG
*
19233640 ATGCCATGTCCCAGACACGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACACGGTCTTACATAGGCACACATATCATCACCGATGCCATGTCCCAGACA
* * *
19233705 TGGTCTTACACA-AGCACATATATCATCTCCAATGCCATGTCCCAGACATGGTCTTACATAGGCA
66 TGGTCTTACACAGA-CACATATATCATCACCAATGCCATGTCCCAAACATGGTCTTACACAGGCA
19233769 CACATATCATCACCG
130 CACATATCATCACCG
19233784 ATGCCATGTCCCAGACACGGTCTTACATAGGCACA
1 ATGCCATGTCCCAGACACGGTCTTACATAGGCACA
19233819 TATAGCACGG
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
142 1 0.01
143 27 0.16
144 136 0.83
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.23
Consensus pattern (144 bp):
ATGCCATGTCCCAGACACGGTCTTACATAGGCACACATATCATCACCGATGCCATGTCCCAGACA
TGGTCTTACACAGACACATATATCATCACCAATGCCATGTCCCAAACATGGTCTTACACAGGCAC
ACATATCATCACCG
Found at i:19239384 original size:43 final size:42
Alignment explanation
Indices: 19239268--19239417 Score: 139
Period size: 43 Copynumber: 3.5 Consensus size: 42
19239258 CGTACAATGC
* * * *
19239268 CAACGTCCCAGACATGGTCTTACATGAAATCAAATATCAATGT
1 CAACGTCCCAGACGTAGTCTTACACGAAATCAAATA-CGATGT
*
19239311 C-ACTGTCCCAGA--TAGGGTCTTACACAAAATCAAATACGATGT
1 CAAC-GTCCCAGACGTA--GTCTTACACGAAATCAAATACGATGT
19239353 CAACGTCCCAGACGTAGTCTTACACGTAAATCATAAGT-CGATG-
1 CAACGTCCCAGACGTAGTCTTACACG-AAATCA-AA-TACGATGT
*
19239396 CTAACGTCCCAGACGTGGTCTT
1 C-AACGTCCCAGACGTAGTCTT
19239418 CCACAATAAC
Statistics
Matches: 91, Mismatches: 6, Indels: 19
0.78 0.05 0.16
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 36 0.40
44 28 0.31
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
CAACGTCCCAGACGTAGTCTTACACGAAATCAAATACGATGT
Found at i:19240777 original size:26 final size:25
Alignment explanation
Indices: 19240748--19240820 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 25
19240738 TTTCATTCCT
*
19240748 ATTTTATCCCTAGTAAAATTTTGAGG
1 ATTTTA-CCCTGGTAAAATTTTGAGG
* *
19240774 ATTTTGCCCATGGTAAAATTTTGATG
1 ATTTTACCC-TGGTAAAATTTTGAGG
19240800 ATTTTACCTCTGGTAAAATTT
1 ATTTTACC-CTGGTAAAATTT
19240821 CGAAAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.07
26 37 0.90
27 1 0.02
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (25 bp):
ATTTTACCCTGGTAAAATTTTGAGG
Found at i:19245603 original size:35 final size:35
Alignment explanation
Indices: 19245547--19245620 Score: 121
Period size: 35 Copynumber: 2.1 Consensus size: 35
19245537 GCTTAAAGCT
* *
19245547 TAATAATTATATAAAATGAACAATTGAATGAGAGA
1 TAATAATTACATAAAACGAACAATTGAATGAGAGA
*
19245582 TAATAATTACATAGAACGAACAATTGAATGAGAGA
1 TAATAATTACATAAAACGAACAATTGAATGAGAGA
19245617 TAAT
1 TAAT
19245621 TGAATGAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.53, C:0.05, G:0.15, T:0.27
Consensus pattern (35 bp):
TAATAATTACATAAAACGAACAATTGAATGAGAGA
Found at i:19249009 original size:23 final size:22
Alignment explanation
Indices: 19248983--19249026 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
19248973 GTGATGAGGT
19248983 TATCTT-ATAAATATGTATGAATC
1 TATCTTGA-AAATATGT-TGAATC
19249006 TATCTTGAAAATATGTTGAAT
1 TATCTTGAAAATATGTTGAAT
19249027 TGGATTGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 14 0.70
24 1 0.05
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (22 bp):
TATCTTGAAAATATGTTGAATC
Found at i:19250325 original size:21 final size:23
Alignment explanation
Indices: 19250286--19250328 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
19250276 ATATTTACAA
19250286 AATACTTTAAAACTTTATAAAAT
1 AATACTTTAAAACTTTATAAAAT
19250309 AATA-TTTAAAA-TTTATAAAA
1 AATACTTTAAAACTTTATAAAA
19250329 CAAAATCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 7 0.35
23 4 0.20
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (23 bp):
AATACTTTAAAACTTTATAAAAT
Found at i:19259062 original size:17 final size:17
Alignment explanation
Indices: 19259022--19259054 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
19259012 ACTAAACCAT
19259022 GAAAATTCTTGAAAAGG
1 GAAAATTCTTGAAAAGG
19259039 GAAAATTCTTGAAAAG
1 GAAAATTCTTGAAAAG
19259055 TTAAAATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.21, T:0.24
Consensus pattern (17 bp):
GAAAATTCTTGAAAAGG
Found at i:19274764 original size:40 final size:46
Alignment explanation
Indices: 19274675--19274777 Score: 161
Period size: 46 Copynumber: 2.2 Consensus size: 46
19274665 CTTGACTACC
*
19274675 AAAACTCTAATAAAAACCTAATATAATAGAGAAAATAAGTAAAACT
1 AAAACTCTAATAAAAAACTAATATAATAGAGAAAATAAGTAAAACT
* * * *
19274721 AAAACTCTAATAAAAAATTGATATAATAAAGAAAATAAATAAAACT
1 AAAACTCTAATAAAAAACTAATATAATAGAGAAAATAAGTAAAACT
19274767 AAAACTCTAAT
1 AAAACTCTAAT
19274778 TGTTGTCGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.23
Consensus pattern (46 bp):
AAAACTCTAATAAAAAACTAATATAATAGAGAAAATAAGTAAAACT
Found at i:19276081 original size:20 final size:20
Alignment explanation
Indices: 19276037--19276101 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 20
19276027 ATTAATTTTA
* *
19276037 AAATTTA-ATTTAAATATGT
1 AAATTTATATTTGAATATAT
19276056 -AATTTATATTTGAATATAT
1 AAATTTATATTTGAATATAT
19276075 AAATTTATATATTTGAA-ATA-
1 AAA-TT-TATATTTGAATATAT
19276095 AAATTTA
1 AAATTTA
19276102 ATAAAAAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 8 0.20
19 12 0.30
20 5 0.12
21 5 0.12
22 10 0.25
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
AAATTTATATTTGAATATAT
Found at i:19276088 original size:22 final size:20
Alignment explanation
Indices: 19276060--19276101 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
19276050 ATATGTAATT
19276060 TATATTTGAATATATAAATTTA
1 TATATTTGAA-ATA-AAATTTA
19276082 TATATTTGAAATAAAATTTA
1 TATATTTGAAATAAAATTTA
19276102 ATAAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
TATATTTGAAATAAAATTTA
Found at i:19281828 original size:22 final size:25
Alignment explanation
Indices: 19281784--19281828 Score: 60
Period size: 22 Copynumber: 1.9 Consensus size: 25
19281774 ATTTTGAAAA
*
19281784 TATTTACGTATTTTTATATAATTTT
1 TATTTACGTATTTTTATAGAATTTT
19281809 TATTT-CGT-TTTTT-TAGAATT
1 TATTTACGTATTTTTATAGAATT
19281829 AGAATCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 5 0.26
24 3 0.16
25 5 0.26
ACGTcount: A:0.24, C:0.04, G:0.07, T:0.64
Consensus pattern (25 bp):
TATTTACGTATTTTTATAGAATTTT
Found at i:19283947 original size:17 final size:18
Alignment explanation
Indices: 19283925--19283962 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
19283915 AATTTAATCC
*
19283925 TTTTTTA-TTCAAGAATA
1 TTTTTTAGTTCAAAAATA
*
19283942 TTTTTTAGTTTAAAAATA
1 TTTTTTAGTTCAAAAATA
19283960 TTT
1 TTT
19283963 GAAAATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (18 bp):
TTTTTTAGTTCAAAAATA
Found at i:19285474 original size:48 final size:48
Alignment explanation
Indices: 19285419--19285510 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
19285409 ATTCATTTGT
*
19285419 AAAATCTTAGTATTGTATTGGAATCACCATGATAACTGTATTGGTTGC
1 AAAATCTTAGTATAGTATTGGAATCACCATGATAACTGTATTGGTTGC
* * *
19285467 AAAATCTTAGTATAGTGTTGGAATCACCATGGTAATTGTATTGG
1 AAAATCTTAGTATAGTATTGGAATCACCATGATAACTGTATTGG
19285511 AATCACTATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (48 bp):
AAAATCTTAGTATAGTATTGGAATCACCATGATAACTGTATTGGTTGC
Found at i:19285746 original size:16 final size:16
Alignment explanation
Indices: 19285725--19285756 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
19285715 TTAATACTTA
*
19285725 GCACTATATTGAAATC
1 GCACTATATTAAAATC
19285741 GCACTATATTAAAATC
1 GCACTATATTAAAATC
19285757 ACCGTTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (16 bp):
GCACTATATTAAAATC
Found at i:19286219 original size:2 final size:2
Alignment explanation
Indices: 19286214--19286244 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
19286204 TTTAAGAATT
19286214 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
19286245 TAATCCATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19287955 original size:30 final size:30
Alignment explanation
Indices: 19287919--19287979 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
19287909 GTAATCATTC
19287919 GTCTAAGAACATTAAGAACATCATAAATAA
1 GTCTAAGAACATTAAGAACATCATAAATAA
19287949 GTCTAAGAACATTAAGAACATCATAAATAA
1 GTCTAAGAACATTAAGAACATCATAAATAA
19287979 G
1 G
19287980 AACCTTAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.52, C:0.13, G:0.11, T:0.23
Consensus pattern (30 bp):
GTCTAAGAACATTAAGAACATCATAAATAA
Found at i:19296438 original size:15 final size:15
Alignment explanation
Indices: 19296400--19296442 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
19296390 TATCATAAAC
19296400 ATAAATTAAAAAAAT
1 ATAAATTAAAAAAAT
*** *
19296415 ATTTTTTAAAAATAT
1 ATAAATTAAAAAAAT
19296430 ATAAATTAAAAAA
1 ATAAATTAAAAAA
19296443 GTAATATAAA
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAAATTAAAAAAAT
Found at i:19296577 original size:25 final size:24
Alignment explanation
Indices: 19296529--19296586 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
19296519 ATTTTGAAAC
*
19296529 ATATATAAAATATAAAATATAAAT
1 ATATAAAAAATATAAAATATAAAT
* *
19296553 TTATGAAAAAATATACAAT-TAAAAT
1 ATAT-AAAAAATATAAAATAT-AAAT
19296578 ATATAAAAA
1 ATATAAAAA
19296587 TCCTATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (24 bp):
ATATAAAAAATATAAAATATAAAT
Found at i:19296814 original size:17 final size:17
Alignment explanation
Indices: 19296771--19296815 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
19296761 GAAAAACCTT
19296771 TTTTATTAA-TTTATATA
1 TTTT-TTAATTTTATATA
**
19296788 TTTTAAAATTTTATATA
1 TTTTTTAATTTTATATA
19296805 TTTTTTAATTT
1 TTTTTTAATTT
19296816 CAAAAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTTAATTTTATATA
Found at i:19299605 original size:39 final size:39
Alignment explanation
Indices: 19299524--19299675 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
19299514 TATGGTAACC
* * * * *
19299524 CGCACAAATGGCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
19299564 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
19299603 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
19299642 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
19299676 CTCGAACATT
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.85
40 16 0.15
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:19303384 original size:40 final size:40
Alignment explanation
Indices: 19303321--19303418 Score: 99
Period size: 40 Copynumber: 2.5 Consensus size: 40
19303311 ATATCTCAGT
* ****
19303321 ATCGCACACTTAGTGCCACATATATTTGAAGCTAT-TCCA
1 ATCGCACACTAAGTGCCACATATAGCCAAAGCTATCTCCA
*** *
19303360 ATTCGCACACTAAGTGCTTTATATAGCCAAAGCTATCTCGA
1 A-TCGCACACTAAGTGCCACATATAGCCAAAGCTATCTCCA
19303401 ATCGCACACTAAGTGCCA
1 ATCGCACACTAAGTGCCA
19303419 AACATAGTCG
Statistics
Matches: 46, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
39 1 0.02
40 41 0.89
41 4 0.09
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.28
Consensus pattern (40 bp):
ATCGCACACTAAGTGCCACATATAGCCAAAGCTATCTCCA
Found at i:19305554 original size:29 final size:31
Alignment explanation
Indices: 19305497--19305555 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
19305487 GGGAGGGGGA
* *
19305497 TGGGAAGGGAGTAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGAAGTAAAAATTTTAGGGGAAAAG
19305528 TGGG-AGGAAGTAAAAATTTT-GGGGAAAA
1 TGGGAAGGAAGTAAAAATTTTAGGGGAAAA
19305556 ATAAAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
30 14 0.54
31 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.39, T:0.20
Consensus pattern (31 bp):
TGGGAAGGAAGTAAAAATTTTAGGGGAAAAG
Found at i:19306881 original size:40 final size:40
Alignment explanation
Indices: 19306782--19306972 Score: 242
Period size: 40 Copynumber: 4.8 Consensus size: 40
19306772 TGGATGATAA
* * * * * **
19306782 CCGGGCTAAGTTCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
19306822 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
19306861 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
19306901 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
19306941 CCGGGTTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
19306973 AGCTATATCC
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
39 32 0.24
40 100 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:19313821 original size:38 final size:38
Alignment explanation
Indices: 19313770--19313850 Score: 162
Period size: 38 Copynumber: 2.1 Consensus size: 38
19313760 ACATCCGAGG
19313770 TAAGTTTTCGAGTAACGAGACTTAGTTACCGATTTGAT
1 TAAGTTTTCGAGTAACGAGACTTAGTTACCGATTTGAT
19313808 TAAGTTTTCGAGTAACGAGACTTAGTTACCGATTTGAT
1 TAAGTTTTCGAGTAACGAGACTTAGTTACCGATTTGAT
19313846 TAAGT
1 TAAGT
19313851 CATGATGTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (38 bp):
TAAGTTTTCGAGTAACGAGACTTAGTTACCGATTTGAT
Found at i:19314216 original size:40 final size:40
Alignment explanation
Indices: 19314117--19314547 Score: 575
Period size: 40 Copynumber: 10.8 Consensus size: 40
19314107 TGGATGATAA
* * * * * **
19314117 CCGGGCTAAGTCTCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
19314157 CCGGGC-AAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
19314196 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
19314236 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
19314276 CTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
19314316 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
19314356 CTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
19314396 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
*
19314436 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
19314476 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
19314516 CTGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
19314548 AGCTATATCC
Statistics
Matches: 346, Mismatches: 37, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.11
40 301 0.87
41 8 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:19314559 original size:80 final size:80
Alignment explanation
Indices: 19314114--19314547 Score: 701
Period size: 80 Copynumber: 5.4 Consensus size: 80
19314104 ATTTGGATGA
* * * * * * * ** *
19314114 TAACCGGGCTAAGTCTCGAAGGCATCTGCGCTAGTGACTAGTTCCGGGC-AAGTCCCGAAGGCAT
1 TAACTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAA
*
19314178 TTGTGTGAGTTACT-
66 TTGTGCGAGTTACTC
* * *
19314192 AAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCA
1 TAA-CTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCA
19314257 ATTGTGCGAGTTACTC
65 ATTGTGCGAGTTACTC
19314273 TAACTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAA
1 TAACTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAA
19314338 TTGTGCGAGTTACTC
66 TTGTGCGAGTTACTC
19314353 TAACTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAA
1 TAACTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAA
19314418 TTGTGCGAGTTACTC
66 TTGTGCGAGTTACTC
*
19314433 TAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAA
1 TAACTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAA
19314498 TTGTGCGAGTTACTC
66 TTGTGCGAGTTACTC
*
19314513 TAACTGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 TAACTGGGCTATGTCCCGAAGGCATTTGTGCGAGT
19314548 AGCTATATCC
Statistics
Matches: 337, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
78 2 0.01
79 39 0.12
80 294 0.87
81 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TAACTGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAA
TTGTGCGAGTTACTC
Found at i:19316055 original size:34 final size:34
Alignment explanation
Indices: 19315999--19316261 Score: 203
Period size: 34 Copynumber: 7.8 Consensus size: 34
19315989 CACCCCTACC
*
19315999 ACTGTATTGA-TATGTTATAAGCATGCTAATTGCT
1 ACTGTATTGACT-TGTTATAAGCATGTTAATTGCT
* * * *
19316033 ATTGTATTGACTTGTCACAAGCATGTTTATTGCT
1 ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
* * * *
19316067 ACTGTATTGATTTATGATAAGCATGATAATTGCT
1 ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
* *
19316101 ACCGTATTGA-TCAGTTATAAGCATGTTAATTGCT
1 ACTGTATTGACT-TGTTATAAGCATGTTAATTGCT
** ***
19316135 ACTGTATCAACTTGTTATAAGCATGTTTGCTGCT
1 ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
** * * * *
19316169 ACCATATTG-GTCTATTATAAGCATGATAATTGAT
1 ACTGTATTGACT-TGTTATAAGCATGTTAATTGCT
* * **
19316203 GCTGTATCGACTTACTATAAGCATGTT-ATTGCT
1 ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
* *
19316236 A-TCGTATTGATTTGTTATAAACATGT
1 ACT-GTATTGACTTGTTATAAGCATGT
19316262 CATGTTACAT
Statistics
Matches: 174, Mismatches: 49, Indels: 13
0.74 0.21 0.06
Matches are distributed among these distances:
32 1 0.01
33 25 0.14
34 145 0.83
35 3 0.02
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (34 bp):
ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
Found at i:19316155 original size:68 final size:68
Alignment explanation
Indices: 19316013--19316261 Score: 229
Period size: 68 Copynumber: 3.7 Consensus size: 68
19316003 TATTGATATG
** * * * * *
19316013 TTATAAGCATGCTAATTGCTATTGTATTGA-CTTGTCACAAGCATGTTTATTGCTACTGTATTGA
1 TTATAAGCATG-TAATTGCTACCGTATTGATCTAGTTATAAGCATGTTAATTGCTACTGTATCGA
*
19316077 TTTA
65 CTTA
* *
19316081 TGATAAGCATGATAATTGCTACCGTATTGATC-AGTTATAAGCATGTTAATTGCTACTGTATCAA
1 TTATAAGCATG-TAATTGCTACCGTATTGATCTAGTTATAAGCATGTTAATTGCTACTGTATCGA
*
19316145 CTTG
65 CTTA
* * * * * *
19316149 TTATAAGCATGT-TTGCTGCTACCATATTGGTCTA-TTATAAGCATGATAATTGATGCTGTATCG
1 TTATAAGCATGTAAT--TGCTACCGTATTGATCTAGTTATAAGCATGTTAATTGCTACTGTATCG
19316212 ACTTA
64 ACTTA
* * * * *
19316217 CTATAAGCATGTTATTGCTATCGTATTGAT-TTGTTATAAACATGT
1 TTATAAGCATGTAATTGCTACCGTATTGATCTAGTTATAAGCATGT
19316262 CATGTTACAT
Statistics
Matches: 146, Mismatches: 29, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
66 2 0.01
67 23 0.16
68 118 0.81
69 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (68 bp):
TTATAAGCATGTAATTGCTACCGTATTGATCTAGTTATAAGCATGTTAATTGCTACTGTATCGAC
TTA
Found at i:19316189 original size:102 final size:102
Alignment explanation
Indices: 19316002--19316200 Score: 265
Period size: 102 Copynumber: 2.0 Consensus size: 102
19315992 CCCTACCACT
* ** *
19316002 GTATTGATATGTTATAAGCATGCTAATTGCTATTGTATTGACTTGTCACAAGCATGTTTATTGCT
1 GTATTGATATGTTATAAGCATGCTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCT
** *
19316067 ACTGTATTGATTTATGATAAGCATGATAATTGCTACC
66 ACCATATTGATCTATGATAAGCATGATAATTGCTACC
* * * *
19316104 GTATTGATCA-GTTATAAGCATGTTAATTGCTACTGTATCAACTTGTTATAAGCATGTTTGCTGC
1 GTATTGAT-ATGTTATAAGCATGCTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGC
* *
19316168 TACCATATTGGTCTATTATAAGCATGATAATTG
65 TACCATATTGATCTATGATAAGCATGATAATTG
19316201 ATGCTGTATC
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
102 82 0.99
103 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.41
Consensus pattern (102 bp):
GTATTGATATGTTATAAGCATGCTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCT
ACCATATTGATCTATGATAAGCATGATAATTGCTACC
Found at i:19316222 original size:102 final size:102
Alignment explanation
Indices: 19316014--19316236 Score: 252
Period size: 102 Copynumber: 2.2 Consensus size: 102
19316004 ATTGATATGT
* * ** * ** *
19316014 TATAAGCATGCTAATTGCTATTGTATTGACTTGTCACAAGCATGTTTATTGCTACTGTATTGATT
1 TATAAGCATGTTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCTACCATATTGATC
* * *
19316079 TATGATAAGCATGATAATTGCTACCGTATTGATCAGT
66 TATGATAAGCATGATAATTGATACCGTATCGATCAGC
* * * *
19316116 TATAAGCATGTTAATTGCTACTGTATCAACTTGTTATAAGCATGTTTGCTGCTACCATATTGGTC
1 TATAAGCATGTTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCTACCATATTGATC
* * * *
19316181 TATTATAAGCATGATAATTGATGCTGTATCGACTTA-C
66 TATGATAAGCATGATAATTGATACCGTATCGA-TCAGC
19316218 TATAAGCATGTT-ATTGCTA
1 TATAAGCATGTTAATTGCTA
19316237 TCGTATTGAT
Statistics
Matches: 101, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
101 7 0.07
102 92 0.91
103 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (102 bp):
TATAAGCATGTTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCTACCATATTGATC
TATGATAAGCATGATAATTGATACCGTATCGATCAGC
Found at i:19316401 original size:48 final size:48
Alignment explanation
Indices: 19316304--19316617 Score: 218
Period size: 48 Copynumber: 6.7 Consensus size: 48
19316294 ACGGAGGAAG
** * * * * *
19316304 TAGTCAGCAGTTTGTCTGCACGACTAGTGATTCATCCACAACGTATTT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
** *
19316352 TAGTTGGCAGTTTAACTGCATGACCAGTGGTTCAGT-CATAACATCTTT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCA-TCCATAACATCTTT
* *
19316400 TAGTCAGCAGTTTATCTGCACGACCAGTGGTTCATCCATAAC-T-TAT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
* ** * * *
19316446 TAG-CAGC-TTTTATTTGCACGACAAGTGGTTTATCCATAACA--TAT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
* * * * * * * * *
19316490 TAAT-AGC-TTTTATCTACATGACAAATGGTTCATCCACAACATATTT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
* * * * *
19316536 TAGTCAGCAATTTATA-TGCACGACAAGTGGTTTATCCATAACGT-ATT
1 TAGTCAGCAGTTTA-ACTGCACGACCAGTGGTTCATCCATAACATCTTT
* * *
19316583 TAGTCGGCAGTTTATCTGCACGACTAGTGGTTCAT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCAT
19316618 TCGCAACGTA
Statistics
Matches: 214, Mismatches: 42, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
44 65 0.30
45 4 0.02
46 10 0.05
47 36 0.17
48 98 0.46
49 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (48 bp):
TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
Found at i:19316473 original size:44 final size:44
Alignment explanation
Indices: 19316410--19316647 Score: 215
Period size: 44 Copynumber: 5.2 Consensus size: 44
19316400 TAGTCAGCAG
* *
19316410 TTTATCTGCACGACCAGTGGTTCATCCATAACTTATTAGCAGCT
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTATTAGCAGCT
* * * **
19316454 TTTATTTGCACGACAAGTGGTTTATCCATAACATATTAATAGCT
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTATTAGCAGCT
* * * * * *
19316498 TTTATCTACATGACAAATGGTTCATCCACAACATATTTTAGTCAGCAA
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTA--TTAG-CAGC-T
* * * *
19316546 TTTATATGCACGACAAGTGGTTTATCCATAACGTATTTAGTCGGCAG
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTA-TTAG-CAGC-T
* * ** *
19316593 TTTATCTGCACGACTAGTGGTTCATTCGCAACGTATTAGCAACT
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTATTAGCAGCT
19316637 TTTATCTGCAC
1 TTTATCTGCAC
19316648 TAATAGATGG
Statistics
Matches: 157, Mismatches: 33, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
44 78 0.50
45 2 0.01
46 7 0.04
47 42 0.27
48 28 0.18
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.35
Consensus pattern (44 bp):
TTTATCTGCACGACAAGTGGTTCATCCATAACGTATTAGCAGCT
Found at i:19324383 original size:23 final size:23
Alignment explanation
Indices: 19324357--19324403 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
19324347 AACATTATTA
19324357 AATTACAATTAACCTAAACTAAT
1 AATTACAATTAACCTAAACTAAT
19324380 AATTACAATTAACCTAAACTAAT
1 AATTACAATTAACCTAAACTAAT
19324403 A
1 A
19324404 GACATTCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (23 bp):
AATTACAATTAACCTAAACTAAT
Found at i:19326453 original size:21 final size:22
Alignment explanation
Indices: 19326428--19326471 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
19326418 AGTTTTTAGA
19326428 CTTTAAAATATTT-AA-TTATAT
1 CTTTAAAAT-TTTCAACTTATAT
19326449 CTTTAAAATTTTCAACTTATAT
1 CTTTAAAATTTTCAACTTATAT
19326471 C
1 C
19326472 AATTAAGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 3 0.14
21 11 0.52
22 7 0.33
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (22 bp):
CTTTAAAATTTTCAACTTATAT
Found at i:19328385 original size:26 final size:24
Alignment explanation
Indices: 19328342--19328392 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
19328332 ATGTAGGAGG
19328342 AATAAACAAAAATAAAGATAATTA
1 AATAAACAAAAATAAAGATAATTA
* *
19328366 AATAACACAAAAAATTAAGATTATTA
1 AATAA-AC-AAAAATAAAGATAATTA
19328392 A
1 A
19328393 GATTTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (24 bp):
AATAAACAAAAATAAAGATAATTA
Found at i:19328861 original size:2 final size:2
Alignment explanation
Indices: 19328844--19328879 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
19328834 AATAAAATTC
* *
19328844 AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19328880 GGATTTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:19338899 original size:18 final size:17
Alignment explanation
Indices: 19338862--19338910 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
19338852 AATATTATGT
19338862 AAAAAAATAAATAAAAC
1 AAAAAAATAAATAAAAC
* *
19338879 AAAAAATTAAATCAAATC
1 AAAAAAATAAAT-AAAAC
* *
19338897 AAATAACTAAATAA
1 AAAAAAATAAATAA
19338911 CTAAACATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAAAAATAAATAAAAC
Found at i:19342910 original size:32 final size:32
Alignment explanation
Indices: 19342866--19342936 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
19342856 AAATGACACT
19342866 TAAACACCACCGGGTTTGCTGCTGCTCCCACC
1 TAAACACCACCGGGTTTGCTGCTGCTCCCACC
*
19342898 TAAACACGACCGGGTTTGCTGCTGCTCCCACC
1 TAAACACCACCGGGTTTGCTGCTGCTCCCACC
*
19342930 AAAACAC
1 TAAACAC
19342937 AACCAACCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.24, C:0.38, G:0.18, T:0.20
Consensus pattern (32 bp):
TAAACACCACCGGGTTTGCTGCTGCTCCCACC
Found at i:19346393 original size:158 final size:158
Alignment explanation
Indices: 19346105--19346412 Score: 521
Period size: 158 Copynumber: 1.9 Consensus size: 158
19346095 ATCACCTTAT
* *
19346105 AAAAAATAACGCAGTTAAGAGCACCAGAAGTGTGCCTGATCAAATGCGCCTCGCCTGAAAGGGTT
1 AAAAAAGAACGCAGTTAAGAGCACCAGAAATGTGCCTGATCAAATGCGCCTCGCCTGAAAGGGTT
19346170 GAGGTGCTTTTGTTGCCTAGCGCTAAGGCGCAAGGCATAGGCATGCCTAGGTGCAAAACTTGAGA
66 GAGGTGCTTTTGTTGCCTAGCGCTAAGGCGCAAGGCATAGGCATGCCTAGGTGCAAAACTTGAGA
*
19346235 ACACCGATAAATCCAACCATAGTGTTAC
131 ACACCAATAAATCCAACCATAGTGTTAC
* *
19346263 AAAAAAGAATGCAGTTAAGAGCACCAGAAATGTGCCTGATCAAATGTGCCTCGCCTGAAAGGGTT
1 AAAAAAGAACGCAGTTAAGAGCACCAGAAATGTGCCTGATCAAATGCGCCTCGCCTGAAAGGGTT
**
19346328 GAGGTGCTTTTGTTGCCTAGCGCTAAGGCGCATA-GCATAGGTGTGCCTAGGTG-AAGAACTTGA
66 GAGGTGCTTTTGTTGCCTAGCGCTAAGGCGCA-AGGCATAGGCATGCCTAGGTGCAA-AACTTGA
19346391 GAACACCAATAAATCCAACCAT
129 GAACACCAATAAATCCAACCAT
19346413 GGACAAGGCT
Statistics
Matches: 141, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
157 2 0.01
158 138 0.98
159 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (158 bp):
AAAAAAGAACGCAGTTAAGAGCACCAGAAATGTGCCTGATCAAATGCGCCTCGCCTGAAAGGGTT
GAGGTGCTTTTGTTGCCTAGCGCTAAGGCGCAAGGCATAGGCATGCCTAGGTGCAAAACTTGAGA
ACACCAATAAATCCAACCATAGTGTTAC
Found at i:19348102 original size:6 final size:6
Alignment explanation
Indices: 19348093--19348126 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
19348083 TTTGGTTGTA
19348093 GTGGCG GTGGCG GTGGCG GTGGCG GTGGCG GTGG
1 GTGGCG GTGGCG GTGGCG GTGGCG GTGGCG GTGG
19348127 ATCTGCGAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.15, G:0.68, T:0.18
Consensus pattern (6 bp):
GTGGCG
Found at i:19355441 original size:132 final size:132
Alignment explanation
Indices: 19355204--19355467 Score: 519
Period size: 132 Copynumber: 2.0 Consensus size: 132
19355194 GAAGCATGTA
19355204 GAGTTGTTAAAATGGAGGAGGTTCATGTGATAAATGGTGTAGAGTCATTAAGAATAGTAATCTTA
1 GAGTTGTTAAAATGGAGGAGGTTCATGTGATAAATGGTGTAGAGTCATTAAGAATAGTAATCTTA
*
19355269 AGAATGTTGAAATCGTATTTAAGTAGTGTGTAGATGATGTGTCTTTTATTCTTCTTTTAGAAGAT
66 AGAATGTTGAAATCGTATTTAAGTAGTGTATAGATGATGTGTCTTTTATTCTTCTTTTAGAAGAT
19355334 GG
131 GG
19355336 GAGTTGTTAAAATGGAGGAGGTTCATGTGATAAATGGTGTAGAGTCATTAAGAATAGTAATCTTA
1 GAGTTGTTAAAATGGAGGAGGTTCATGTGATAAATGGTGTAGAGTCATTAAGAATAGTAATCTTA
19355401 AGAATGTTGAAATCGTATTTAAGTAGTGTATAGATGATGTGTCTTTTATTCTTCTTTTAGAAGAT
66 AGAATGTTGAAATCGTATTTAAGTAGTGTATAGATGATGTGTCTTTTATTCTTCTTTTAGAAGAT
19355466 GG
131 GG
19355468 ATTAGATGAA
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
132 131 1.00
ACGTcount: A:0.31, C:0.05, G:0.25, T:0.38
Consensus pattern (132 bp):
GAGTTGTTAAAATGGAGGAGGTTCATGTGATAAATGGTGTAGAGTCATTAAGAATAGTAATCTTA
AGAATGTTGAAATCGTATTTAAGTAGTGTATAGATGATGTGTCTTTTATTCTTCTTTTAGAAGAT
GG
Found at i:19359252 original size:17 final size:17
Alignment explanation
Indices: 19359232--19359287 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
19359222 TTTTTTATTT
*
19359232 TTAATTAATGTTTATAA
1 TTAATTAATATTTATAA
* **
19359249 TTAATAAATATTTATTT
1 TTAATTAATATTTATAA
* *
19359266 TTAATTTATATTTTTAA
1 TTAATTAATATTTATAA
19359283 TTAAT
1 TTAAT
19359288 AACTCTTTTA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (17 bp):
TTAATTAATATTTATAA
Found at i:19359265 original size:34 final size:34
Alignment explanation
Indices: 19359225--19359289 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
19359215 TTTAAGTTTT
*
19359225 TTTATTTTTAATTAATGTTTATAATTAATAAATA
1 TTTATTTTTAATTAATATTTATAATTAATAAATA
* *
19359259 TTTATTTTTAATTTATATTTTTAATTAATAA
1 TTTATTTTTAATTAATATTTATAATTAATAA
19359290 CTCTTTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (34 bp):
TTTATTTTTAATTAATATTTATAATTAATAAATA
Found at i:19362248 original size:24 final size:24
Alignment explanation
Indices: 19362204--19362249 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
19362194 TTTCTAGAAG
* *
19362204 ATTTAGTATTTATTGATATAATAT
1 ATTTAGCATTTATTGACATAATAT
19362228 ATTTAGCATTTATT-AGCATAAT
1 ATTTAGCATTTATTGA-CATAAT
19362250 TTTTTTGACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTGACATAATAT
Found at i:19364697 original size:25 final size:25
Alignment explanation
Indices: 19364668--19364737 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
19364658 GAAGCTTTTT
* *
19364668 CGAGCCATATAACGGGAAGCTCATG
1 CGAGCTATATAACGGGAAGCTCATA
* *
19364693 TGAGCTA-AGTAAAGGGAAGCTCATA
1 CGAGCTATA-TAACGGGAAGCTCATA
*
19364718 CGAGCTATATATCGGGAAGC
1 CGAGCTATATAACGGGAAGC
19364738 GCTTGCGAGC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
24 1 0.03
25 34 0.94
26 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.19
Consensus pattern (25 bp):
CGAGCTATATAACGGGAAGCTCATA
Found at i:19366925 original size:24 final size:24
Alignment explanation
Indices: 19366898--19366945 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
19366888 AAGATTTAGT
*
19366898 ATTTATTAGTATAATATATTTAAC
1 ATTTATTAGCATAATATATTTAAC
*
19366922 ATTTATTAGCATAATTTATTTAAC
1 ATTTATTAGCATAATATATTTAAC
19366946 CTATAAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.50
Consensus pattern (24 bp):
ATTTATTAGCATAATATATTTAAC
Found at i:19377368 original size:17 final size:17
Alignment explanation
Indices: 19377346--19377379 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
19377336 GGTTGGTGTG
19377346 ATCGGTTCATTTATGCC
1 ATCGGTTCATTTATGCC
19377363 ATCGGTTCATTTATGCC
1 ATCGGTTCATTTATGCC
19377380 CGATTAACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.41
Consensus pattern (17 bp):
ATCGGTTCATTTATGCC
Found at i:19379654 original size:6 final size:6
Alignment explanation
Indices: 19379643--19379670 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
19379633 TTATTTGTTT
19379643 TTTTTG TTTTTG TTTTTG TTTTTG TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTT
19379671 ATTTGTTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTTTG
Found at i:19379661 original size:21 final size:21
Alignment explanation
Indices: 19379637--19379678 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
19379627 AGACTTTTAT
*
19379637 TTGTTTTT-TTTGTTTTTGTTT
1 TTGTTTTTGTTT-TATTTGTTT
19379658 TTGTTTTTGTTTTATTTGTTT
1 TTGTTTTTGTTTTATTTGTTT
19379679 GGGCTGGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.83
Consensus pattern (21 bp):
TTGTTTTTGTTTTATTTGTTT
Found at i:19380028 original size:44 final size:44
Alignment explanation
Indices: 19379969--19380134 Score: 127
Period size: 44 Copynumber: 3.6 Consensus size: 44
19379959 TTCAATCCAT
* * *
19379969 TCCACTGTAATTTCAGGGATATAGGATTTGTAGCTTCATCTTAC
1 TCCACTGCAACTTCAGGGATATAAGATTTGTAGCTTCATCTTAC
* * * ** *
19380013 TCCACTGCATCTTCAGAGAGATAAGATTCGTTATGGTATATTCAATCTGAC
1 TCCACTGCAACTTCAGGGATATAAGA----TT-T-GTAGCTTC-ATCTTAC
* * *
19380064 -CCACTGCAACTTTAGGGGTATAAGATTTGTAGCTTCATCTTGC
1 TCCACTGCAACTTCAGGGATATAAGATTTGTAGCTTCATCTTAC
* * *
19380107 TCTACTGCAACTTCAGAGAGATAAGATT
1 TCCACTGCAACTTCAGGGATATAAGATT
19380135 CGTTATGGTA
Statistics
Matches: 91, Mismatches: 23, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
43 5 0.05
44 48 0.53
45 1 0.01
46 2 0.02
48 2 0.02
49 1 0.01
50 26 0.29
51 6 0.07
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGATATAAGATTTGTAGCTTCATCTTAC
Found at i:19380089 original size:50 final size:50
Alignment explanation
Indices: 19380014--19380184 Score: 146
Period size: 50 Copynumber: 3.5 Consensus size: 50
19380004 TCATCTTACT
* * *
19380014 CCACTGCATCTTCAGAGAG-ATAAGATTCGTTATGGTATATTCAATCTGAC
1 CCACTGCAACTTCAG-GGGTATAAGATTCGTTATGGTAGATTCAATCTGAC
* *
19380064 CCACTGCAACTTTAGGGGTATAAGA----TT-T-GTAGCTTC-ATCTTG-C
1 CCACTGCAACTTCAGGGGTATAAGATTCGTTATGGTAGATTCAATC-TGAC
* * *
19380107 TCTACTGCAACTTCAGAGAG-ATAAGATTCGTTATGGTAGATTCAATCCGAC
1 -CCACTGCAACTTCAG-GGGTATAAGATTCGTTATGGTAGATTCAATCTGAC
* *
19380158 CCACTGCAACTTCAAGGGTATAGGATT
1 CCACTGCAACTTCAGGGGTATAAGATT
19380185 TATAGCTTCA
Statistics
Matches: 94, Mismatches: 14, Indels: 26
0.70 0.10 0.19
Matches are distributed among these distances:
43 4 0.04
44 27 0.29
45 3 0.03
46 2 0.02
48 2 0.02
49 5 0.05
50 47 0.50
51 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (50 bp):
CCACTGCAACTTCAGGGGTATAAGATTCGTTATGGTAGATTCAATCTGAC
Found at i:19380091 original size:94 final size:94
Alignment explanation
Indices: 19379970--19380945 Score: 701
Period size: 94 Copynumber: 10.4 Consensus size: 94
19379960 TCAATCCATT
* * * * *
19379970 CCACTGTAATTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCACTGCATCTTCAGAGAGAT
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGAGAGAT
19380035 AAGATTCGTTATGGTATATTCAATCTGAC
66 AAGATTCGTTATGGTATATTCAATCTGAC
* * *
19380064 CCACTGCAACTTTAGGGGTATAAGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCAGAGAGAT
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGAGAGAT
* *
19380129 AAGATTCGTTATGGTAGATTCAATCCGAC
66 AAGATTCGTTATGGTATATTCAATCTGAC
* * * * * * *
19380158 CCACTGCAACTTCAAGGGTATAGGATTTATAGCTTCATCTTGTTCCATTTCATA-TTTAGGGAGA
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCA-ACTTCAGAGAGA
** *
19380222 TAAGATTTATTATGGTAGATTCAATCTGAC
65 TAAGATTCGTTATGGTATATTCAATCTGAC
* * * * * * **
19380252 CCGCTGCAACTTCAAGGGTATATGATTTGTAGTTTCAT-TTCGCTTCATTATAACTTCAGAGAGA
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTT-GCTCCACTGCAACTTCAGAGAGA
* * * *
19380316 TAAGATTCGCTAAT-GTAAATTTTTAATCCGAC
65 TAAGATTCG-TTATGGT--ATATTCAATCTGAC
* * * * * * *
19380348 CCATTACAACTTCAAGGGTATAGGATTTATAGCTTCATC-TACTCTACTACAACTTCAGAGAGAT
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGAGAGAT
* * *
19380412 AAGATTTGCTATGGTA-ACTTCAATCCGAC
66 AAGATTCGTTATGGTATA-TTCAATCTGAC
* * ** *
19380441 CCACTGTAACTTTA-GGGTATAAAATTTGTAGCTTCAATC-TGCTCCACTGCAACTTTAGAGAGA
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTC-ATCTTGCTCCACTGCAACTTCAGAGAGA
* ** * *
19380504 TAAGATACACTATGGTAGATTTAATCTGAC
65 TAAGATTCGTTATGGTATATTCAATCTGAC
* * * * * * *
19380534 CCAATACAACTTCAGGGGTATAGGAATTGTAGCTTCAAT-TCGATCCACTGCAACTTCAGGGATA
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTC-ATCTTGCTCCACTGCAACTTCAGAGAGA
* * * *
19380598 TAGGATTCGTTATTGGTGT-TT-TATTTCGAC
65 TAAGATTCGTTA-TGGTATATTCAATCT-GAC
* * * ** * * * * * *
19380628 CTACTGCAACTTCAGAGGTATAGGAATCATAACTTTATCTTGCTCTATTGCAACTTCAGGGAGGT
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGAGAGAT
** * *
19380693 AAGATTCGCCAT--TATAGTTTCATTCCGAC
66 AAGATTCGTTATGGTATA--TTCAATCTGAC
* * * * * * *
19380722 CCACTAG-AACTTTAGGGGTATAGGAATTGTAGCTTCAATC-CGATCCACTGTAACTTCAGGGAT
1 CCACT-GCAACTTCAGGGGTATAGGATTTGTAGCTTC-ATCTTGCTCCACTGCAACTTCAGAGAG
* ** * * * *
19380785 ATAGGATTCAATGTTGTAGT-TTTATTCTGAC
64 ATAAGATTCGTTATGGTA-TATTCAATCTGAC
* * * * * * *
19380816 CTACTGCAACTTTA-GGGTATAAGAATTGTAGCTTCAATCTAG-TCCACTGCAACTTCAGGGATA
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTC-ATCTTGCTCCACTGCAACTTCAGAGAGA
* ** * * *
19380879 TAAAATTCGCCATTGTAGT-TTTATTCTGAC
65 TAAGATTCGTTATGGTA-TATTCAATCTGAC
** *
19380909 CCACTGCAACTTCAGAAGTATAGGAATTGTAGCTTCA
1 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCA
19380946 CTGATTATTA
Statistics
Matches: 704, Mismatches: 150, Indels: 57
0.77 0.16 0.06
Matches are distributed among these distances:
91 2 0.00
92 18 0.03
93 168 0.24
94 429 0.61
95 41 0.06
96 45 0.06
97 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (94 bp):
CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGAGAGAT
AAGATTCGTTATGGTATATTCAATCTGAC
Found at i:19380224 original size:188 final size:187
Alignment explanation
Indices: 19379909--19380945 Score: 825
Period size: 188 Copynumber: 5.5 Consensus size: 187
19379899 GTGTTACAGT
* * * * * * *
19379909 TTCATCTTGTTCAAATGCAACTTCA-AGAAGAAAAGATTTGCTATTGTAGTTTCAATCC-ATTCC
1 TTCATCTTGCTCTACTGCAACTTCAGAG-AGATAAGATTCGCTATTGTAGATTCAATCCGA-CCC
* * * * *
19379972 ACTGTAATTTC-AGGGATATAGGATTTGTAGCTTCATCTT-ACTCCACTGCATCTTCAGAGAGAT
64 ACTGCAACTTCAAGGG-TATAGGAATTGTAGCTTCATCTTGA-TCCACTGCAACTTCAGGGAGAT
19380035 AAGATTCGTTATGGTATATTCAATCTGACCCACTGCAACTTTAGGGGTATAAGATTTGTAGC
127 AAGATTCGTTATGGTATATTCAATCTGACCCACTGCAACTTTA-GGGTATAAGATTTGTAGC
* *
19380097 TTCATCTTGCTCTACTGCAACTTCAGAGAGATAAGATTCGTTATGGTAGATTCAATCCGACCCAC
1 TTCATCTTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTGTAGATTCAATCCGACCCAC
* * * * * *
19380162 TGCAACTTCAAGGGTATAGGATTTATAGCTTCATCTTGTTCCATTTCATA-TTTAGGGAGATAAG
66 TGCAACTTCAAGGGTATAGGAATTGTAGCTTCATCTTGATCCACTGCA-ACTTCAGGGAGATAAG
** * * * * *
19380226 ATTTATTATGGTAGATTCAATCTGACCCGCTGCAACTTCAAGGGTATATGATTTGTAGT
130 ATTCGTTATGGTATATTCAATCTGACCCACTGCAACTT-TAGGGTATAAGATTTGTAGC
* ** * * *
19380285 TTCAT-TTCGCT-TCATTATAACTTCAGAGAGATAAGATTCGCTAATGTAAATTTTTAATCCGAC
1 TTCATCTT-GCTCT-ACTGCAACTTCAGAGAGATAAGATTCGCTATTGTAGA--TTCAATCCGAC
* * * * * * *
19380348 CCATTACAACTTCAAGGGTATAGGATTTATAGCTTCATC-T-ACTCTACTACAACTTCAGAGAGA
62 CCACTGCAACTTCAAGGGTATAGGAATTGTAGCTTCATCTTGA-TCCACTGCAACTTCAGGGAGA
* * * * *
19380411 TAAGATTTGCTATGGTA-ACTTCAATCCGACCCACTGTAACTTTAGGGTATAAAATTTGTAGC
126 TAAGATTCGTTATGGTATA-TTCAATCTGACCCACTGCAACTTTAGGGTATAAGATTTGTAGC
* * * * * * *
19380473 TTCAATC-TGCTCCACTGCAACTTTAGAGAGATAAGATACACTATGGTAGATTTAATCTGACCCA
1 TTC-ATCTTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTGTAGATTCAATCCGACCCA
* * * * * *
19380537 ATACAACTTCAGGGGTATAGGAATTGTAGCTTCAAT-TCGATCCACTGCAACTTCAGGGATATAG
65 CTGCAACTTCAAGGGTATAGGAATTGTAGCTTC-ATCTTGATCCACTGCAACTTCAGGGAGATAA
* * * * * * * ** *
19380601 GATTCGTTATTGGTGT-TT-TATTTCGACCTACTGCAACTTCAGAGGTATAGGAATCATAAC
129 GATTCGTTA-TGGTATATTCAATCT-GACCCACTGCAACTTTAG-GGTATAAGATTTGTAGC
* * * * * * * *
19380661 TTTATCTTGCTCTATTGCAACTTCAGGGAGGTAAGATTCGCCATTATAGTTTCATTCCGACCCAC
1 TTCATCTTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTGTAGATTCAATCCGACCCAC
* * * * * *
19380726 TAG-AACTTTAGGGGTATAGGAATTGTAGCTTCAATC-CGATCCACTGTAACTTCAGGGATATAG
66 T-GCAACTTCAAGGGTATAGGAATTGTAGCTTC-ATCTTGATCCACTGCAACTTCAGGGAGATAA
** * * * * * *
19380789 GATTCAATGTTGTAGT-TTTATTCTGACCTACTGCAACTTTAGGGTATAAGAATTGTAGC
129 GATTCGTTATGGTA-TATTCAATCTGACCCACTGCAACTTTAGGGTATAAGATTTGTAGC
* * * * * * * * * *
19380848 TTCAATCTAG-TCCACTGCAACTTCAGGGATATAAAATTCGCCATTGTAGTTTTATTCTGACCCA
1 TTC-ATCTTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTGTAGATTCAATCCGACCCA
*
19380912 CTGCAACTTC-AGAAGTATAGGAATTGTAGCTTCA
65 CTGCAACTTCAAG-GGTATAGGAATTGTAGCTTCA
19380946 CTGATTATTA
Statistics
Matches: 687, Mismatches: 131, Indels: 64
0.78 0.15 0.07
Matches are distributed among these distances:
186 47 0.07
187 141 0.21
188 389 0.57
189 63 0.09
190 47 0.07
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (187 bp):
TTCATCTTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTGTAGATTCAATCCGACCCAC
TGCAACTTCAAGGGTATAGGAATTGTAGCTTCATCTTGATCCACTGCAACTTCAGGGAGATAAGA
TTCGTTATGGTATATTCAATCTGACCCACTGCAACTTTAGGGTATAAGATTTGTAGC
Found at i:19380788 original size:44 final size:44
Alignment explanation
Indices: 19380711--19380880 Score: 123
Period size: 44 Copynumber: 3.8 Consensus size: 44
19380701 CCATTATAGT
* * * *
19380711 TTCATTCCGACCCACTAG-AACTTTAGGGGTATAGGAATTGTAGC
1 TTCAATCCGATCCACT-GCAACTTCAGGGATATAGGAATTGTAGC
* *
19380755 TTCAATCCGATCCACTGTAACTTCAGGGATATAGGATTCAATGTTGTAGT
1 TTCAATCCGATCCACTGCAACTTCAGGGATATAGG----AA--TTGTAGC
* * * * *
19380805 TTTATTCTGA-CCTACTGCAACTTTAGGG-TATAAGAATTGTAGC
1 TTCAATCCGATCC-ACTGCAACTTCAGGGATATAGGAATTGTAGC
*
19380848 TTCAAT-CTAGTCCACTGCAACTTCAGGGATATA
1 TTCAATCCGA-TCCACTGCAACTTCAGGGATATA
19380881 AAATTCGCCA
Statistics
Matches: 98, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
42 1 0.01
43 25 0.26
44 35 0.36
45 2 0.02
48 2 0.02
49 7 0.07
50 26 0.27
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (44 bp):
TTCAATCCGATCCACTGCAACTTCAGGGATATAGGAATTGTAGC
Found at i:19380934 original size:281 final size:281
Alignment explanation
Indices: 19380430--19380935 Score: 673
Period size: 281 Copynumber: 1.8 Consensus size: 281
19380420 CTATGGTAAC
* *
19380430 TTCAATCCGACCCACTGTAACTTTAGGGTATAAAATTTGTAGCTTCAATCTGCTCCACTGCAACT
1 TTCAATCCGACCCACTGTAACTTTAGGGTATAAAATTTGTAGCTTCAATCCGATCCACTGCAACT
* * *
19380495 TTAGAGAGATAAGATACACTATGGTAGATTTAATCTGACCCAATACAACTTCAGGGGTATAGGAA
66 TCAGAGAGATAAGATACAATATGGTAGATTTAATCTGACCCAATACAACTTCAGGGGTATAAGAA
* ** **
19380560 TTGTAGCTTCAATTCGATCCACTGCAACTTCAGGGATATAGGATTCGTTATTGGTGTTTTATTTC
131 TTGTAGCTTCAATTAGATCCACTGCAACTTCAGGGATATAAAATTCGCCATTGGTGTTTTATTTC
* *
19380625 GACCTACTGCAACTTCAGAGGTATAGGAATCATAACTTTATCTTGCTCTATTGCAACTTCAGGGA
196 GACCCACTGCAACTTCAGAAGTATAGGAATCATAACTTTATCTTGCTCTATTGCAACTTCAGGGA
19380690 GGTAAGATTCGCCATTATAGT
261 GGTAAGATTCGCCATTATAGT
* * *
19380711 TTCATTCCGACCCACTAG-AACTTTAGGGGTATAGGAA-TTGTAGCTTCAATCCGATCCACTGTA
1 TTCAATCCGACCCACT-GTAACTTTA-GGGTATA-AAATTTGTAGCTTCAATCCGATCCACTGCA
* * * * * * * * * * * *
19380774 ACTTCAGGGATATAGGATTCAATGTTGTAGTTTTATTCTGACCTACTGCAACTTTA-GGGTATAA
63 ACTTCAGAGAGATAAGATACAATATGGTAGATTTAATCTGACCCAATACAACTTCAGGGGTATAA
19380838 GAATTGTAGCTTCAATCTAG-TCCACTGCAACTTCAGGGATATAAAATTCGCCATT-GTAGTTTT
128 GAATTGTAGCTTCAAT-TAGATCCACTGCAACTTCAGGGATATAAAATTCGCCATTGGT-GTTTT
19380901 A-TTCTGACCCACTGCAACTTCAGAAGTATAGGAAT
191 ATTTC-GACCCACTGCAACTTCAGAAGTATAGGAAT
19380936 TGTAGCTTCA
Statistics
Matches: 192, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
280 5 0.03
281 110 0.57
282 75 0.39
283 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (281 bp):
TTCAATCCGACCCACTGTAACTTTAGGGTATAAAATTTGTAGCTTCAATCCGATCCACTGCAACT
TCAGAGAGATAAGATACAATATGGTAGATTTAATCTGACCCAATACAACTTCAGGGGTATAAGAA
TTGTAGCTTCAATTAGATCCACTGCAACTTCAGGGATATAAAATTCGCCATTGGTGTTTTATTTC
GACCCACTGCAACTTCAGAAGTATAGGAATCATAACTTTATCTTGCTCTATTGCAACTTCAGGGA
GGTAAGATTCGCCATTATAGT
Found at i:19383530 original size:22 final size:23
Alignment explanation
Indices: 19383505--19383550 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
19383495 CAACCAAACC
19383505 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
19383527 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
19383550 A
1 A
19383551 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:19383556 original size:23 final size:23
Alignment explanation
Indices: 19383512--19383556 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
19383502 ACCAATTCAA
*
19383512 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
19383535 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
19383557 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:19389611 original size:2 final size:2
Alignment explanation
Indices: 19389606--19389631 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
19389596 ACACACACAC
19389606 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
19389632 GAATGCGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19391307 original size:22 final size:23
Alignment explanation
Indices: 19391282--19391327 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
19391272 CAACCAAACC
19391282 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
19391304 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
19391327 A
1 A
19391328 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:19391333 original size:23 final size:23
Alignment explanation
Indices: 19391289--19391333 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
19391279 ACCAATTCAA
*
19391289 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
19391312 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
19391334 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:19392049 original size:54 final size:56
Alignment explanation
Indices: 19391913--19392050 Score: 246
Period size: 55 Copynumber: 2.5 Consensus size: 56
19391903 AACCTTACAG
19391913 CGGGATTACCAGTCCAGGCTAAAT-CCCTGTGAATATAAACTCATAGAGTATTAGT
1 CGGGATTACCAGTCCAGGCTAAATCCCCTGTGAATATAAACTCATAGAGTATTAGT
19391968 CGGGATTACCAGTCCAGGCTAAATCCCCTGT-AATATAAACTCATAGAGTATT-GT
1 CGGGATTACCAGTCCAGGCTAAATCCCCTGTGAATATAAACTCATAGAGTATTAGT
*
19392022 CGGGATTACCAGTCCAGGCTAACTCCCCT
1 CGGGATTACCAGTCCAGGCTAAATCCCCT
19392051 CCAACGACAA
Statistics
Matches: 81, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
54 30 0.37
55 45 0.56
56 6 0.07
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (56 bp):
CGGGATTACCAGTCCAGGCTAAATCCCCTGTGAATATAAACTCATAGAGTATTAGT
Found at i:19397294 original size:2 final size:2
Alignment explanation
Indices: 19397287--19397311 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
19397277 CAATTCTAAT
19397287 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
19397312 TGTACATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19405865 original size:31 final size:31
Alignment explanation
Indices: 19405830--19405889 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
19405820 CACTTAATTC
*
19405830 AATTTAGTCCTTTTTACCCAATTAACTACTA
1 AATTTAGTCATTTTTACCCAATTAACTACTA
19405861 AATTTAGTCATTTTTACCCAATTAACTAC
1 AATTTAGTCATTTTTACCCAATTAACTAC
19405890 CGAAACCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42
Consensus pattern (31 bp):
AATTTAGTCATTTTTACCCAATTAACTACTA
Found at i:19407069 original size:21 final size:21
Alignment explanation
Indices: 19407018--19407080 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
19407008 TTTTTATAGT
* *
19407018 GCAAGGGTTACATGTCCGTGTG
1 GCAAGGG-GACATGCCCGTGTG
*
19407040 GCCAGGGGACATGCCCGTGTG
1 GCAAGGGGACATGCCCGTGTG
* * * *
19407061 GTAATGGGACACGCTCGTGT
1 GCAAGGGGACATGCCCGTGT
19407081 TTCAGGCTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
21 27 0.82
22 6 0.18
ACGTcount: A:0.17, C:0.22, G:0.38, T:0.22
Consensus pattern (21 bp):
GCAAGGGGACATGCCCGTGTG
Found at i:19409894 original size:11 final size:11
Alignment explanation
Indices: 19409880--19409924 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
19409870 AGATAAATAT
19409880 TATTTTATTAA
1 TATTTTATTAA
*
19409891 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
19409904 TATTTTATTAT
1 TATTTTATTAA
19409915 TATTTTATTA
1 TATTTTATTA
19409925 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:19411801 original size:46 final size:46
Alignment explanation
Indices: 19411742--19411959 Score: 267
Period size: 46 Copynumber: 4.7 Consensus size: 46
19411732 ATGAAATGTG
* * *
19411742 TAAGACCATGGTTGAAAGATACGATGGCAACATGACGGGAAATAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * *
19411788 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* *
19411834 TACGACCATGGTTGAAAGATACCATGGCAACGA-GACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAAC-ATGACAGGAAATGAA
* * * *
19411880 CAAGACCATGATTGAAAGATACCATGGCAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * * * *
19411926 TAAGACTATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
19411960 TCAAAGATAA
Statistics
Matches: 148, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
45 1 0.01
46 147 0.99
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.19
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:19413056 original size:40 final size:39
Alignment explanation
Indices: 19412995--19413087 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 39
19412985 TCTCGGTATT
19412995 GCACACTTAGTGCCTCATATAGCCAAAGCTATTCCAACTC
1 GCACACTTAGTGCCTCATATAGCCAAAGCTATTCCAA-TC
* **
19413035 GCACACTTAGTG-CT-ATTTATAGCCGAAGCTATTTGAATC
1 GCACACTTAGTGCCTCA--TATAGCCAAAGCTATTCCAATC
*
19413074 GCACACTTAATGCC
1 GCACACTTAGTGCC
19413088 GAATAAAGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
38 1 0.02
39 15 0.33
40 30 0.65
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (39 bp):
GCACACTTAGTGCCTCATATAGCCAAAGCTATTCCAATC
Found at i:19414355 original size:25 final size:26
Alignment explanation
Indices: 19414327--19414388 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
19414317 AGCCAAAATC
*
19414327 GGTAAGCTTC-TCCAAGCTGA-AATAT
1 GGTAAGCTTCATACAAGCTGAGAAT-T
19414352 GGTAAGC-TCATACAAGCTGAGAATT
1 GGTAAGCTTCATACAAGCTGAGAATT
19414377 GGTAAGC-TCATA
1 GGTAAGCTTCATA
19414389 TGAGCTGTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
24 2 0.06
25 29 0.85
26 3 0.09
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (26 bp):
GGTAAGCTTCATACAAGCTGAGAATT
Found at i:19414395 original size:25 final size:25
Alignment explanation
Indices: 19414339--19414388 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
19414329 TAAGCTTCTC
19414339 CAAGCTGAAATATGGTAAGCTCATA
1 CAAGCTGAAATATGGTAAGCTCATA
19414364 CAAGCTGAGAAT-TGGTAAGCTCATA
1 CAAGCTGA-AATATGGTAAGCTCATA
19414389 TGAGCTGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (25 bp):
CAAGCTGAAATATGGTAAGCTCATA
Found at i:19418499 original size:28 final size:28
Alignment explanation
Indices: 19418462--19418577 Score: 173
Period size: 28 Copynumber: 4.2 Consensus size: 28
19418452 GGAGGAAGTG
19418462 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
19418490 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
19418518 TTCTGGTGGCTCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
19418546 ATCTGGTGACTCTGTCAC-AATATTTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
19418572 TTCTGG
1 TTCTGG
19418578 AAGCCATGCT
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 5 0.06
27 6 0.07
28 70 0.86
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:19420257 original size:29 final size:29
Alignment explanation
Indices: 19420215--19420271 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
19420205 GGTTGAAGAA
19420215 GAAAGAAATAGAAAAAAAATGATAGCTAC
1 GAAAGAAATAGAAAAAAAATGATAGCTAC
*
19420244 GAAAGAAATAGAAAAAAGATGATAGCTA
1 GAAAGAAATAGAAAAAAAATGATAGCTA
19420272 GCTTTTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.61, C:0.05, G:0.19, T:0.14
Consensus pattern (29 bp):
GAAAGAAATAGAAAAAAAATGATAGCTAC
Found at i:19421238 original size:21 final size:21
Alignment explanation
Indices: 19421214--19421258 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
19421204 AGATTTAGCG
*
19421214 AATGGCATCACTTTATAACAA
1 AATGACATCACTTTATAACAA
19421235 AATGACATCACTTTATAACAA
1 AATGACATCACTTTATAACAA
19421256 AAT
1 AAT
19421259 ATTTTCCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.47, C:0.18, G:0.07, T:0.29
Consensus pattern (21 bp):
AATGACATCACTTTATAACAA
Found at i:19423116 original size:27 final size:26
Alignment explanation
Indices: 19423084--19423165 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
19423074 AATCTCATAT
* *
19423084 CTGTAGGATAGTATTACTAAAATATCC
1 CTGTAGGATAGAATTACTGAAATA-CC
*
19423111 CTGTA-GAGTAGAATTACTGAAATGCCC
1 CTGTAGGA-TAGAATTACTGAAAT-ACC
*
19423138 CTGTAGGGTAGAATTACTGAAATACC
1 CTGTAGGATAGAATTACTGAAATACC
19423164 CT
1 CT
19423166 TGGTTTACAA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
26 6 0.13
27 40 0.85
28 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (26 bp):
CTGTAGGATAGAATTACTGAAATACC
Found at i:19423179 original size:27 final size:27
Alignment explanation
Indices: 19423149--19423443 Score: 238
Period size: 27 Copynumber: 11.0 Consensus size: 27
19423139 TGTAGGGTAG
* * **
19423149 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * **
19423176 AATTACTG-AATACCCGTGGTTTACAA
1 AATTACCGAAATACCCTTGATTTGTAA
* ** *
19423202 AATTACCAAAATACCCTCAATTAGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
19423229 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
19423256 AATTACCCAAATACCCATT-ATTTGTGA
1 AATTACCGAAATACCC-TTGATTTGTAA
* *
19423283 AATTACCGAAATACCATCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
19423310 AATTACCAAAATA-CCTCTAATTTGGAA
1 AATTACCGAAATACCCT-TGATTTGTAA
* *
19423337 AATTACTGAAATACCCTTGATTTGGAA
1 AATTACCGAAATACCCTTGATTTGTAA
** * * *
19423364 AATTATAGAAATACCCCTAATTTATAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
19423391 AATTACAGAAATACCATT-AGTTTGTAA
1 AATTACCGAAATACCCTTGA-TTTGTAA
*
19423418 AATTACCGAAATACCCTTGGTTTGTA
1 AATTACCGAAATACCCTTGATTTGTA
19423444 GATTTACCAA
Statistics
Matches: 217, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
26 27 0.12
27 186 0.86
28 4 0.02
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGTAA
Found at i:19423187 original size:26 final size:27
Alignment explanation
Indices: 19423149--19423217 Score: 104
Period size: 26 Copynumber: 2.6 Consensus size: 27
19423139 TGTAGGGTAG
*
19423149 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCGTGGTTTACAA
19423176 AATTACTG-AATACCCGTGGTTTACAA
1 AATTACTGAAATACCCGTGGTTTACAA
**
19423202 AATTACCAAAATACCC
1 AATTACTGAAATACCC
19423218 TCAATTAGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 23 0.61
27 15 0.39
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACTGAAATACCCGTGGTTTACAA
Found at i:19423311 original size:81 final size:80
Alignment explanation
Indices: 19423174--19423441 Score: 265
Period size: 81 Copynumber: 3.3 Consensus size: 80
19423164 CTTGGTTTAC
* * * ** * *
19423174 AAAATTACTG-AATACCCGTGGTTTACAAAATTACCAAAATACCCTCAATTAGTAAAATTACCAA
1 AAAATTACCGAAATACCCTTGATTTGGAAAATTACCGAAATA-CCTCAATTTGTAAAATTACCAA
* *
19423238 AATACCCCTGGTTTGT
65 AATACCACTAGTTTGT
* *
19423254 AAAATTACCCAAATACCCATT-ATTTGTG-AAATTACCGAAATACCATCGATTTGTAAAATTACC
1 AAAATTACCGAAATACCC-TTGATTTG-GAAAATTACCGAAATACC-TCAATTTGTAAAATTACC
* * *
19423317 AAAATACCTCTAATTTGG
63 AAAATACCACTAGTTTGT
* ** * *
19423335 AAAATTACTGAAATACCCTTGATTTGGAAAATTATAGAAATACCCCTAATTTATAAAATTA-CAG
1 AAAATTACCGAAATACCCTTGATTTGGAAAATTACCGAAATACCTC-AATTTGTAAAATTACCA-
*
19423399 AAATACCATTAGTTTGT
64 AAATACCACTAGTTTGT
*
19423416 AAAATTACCGAAATACCCTTGGTTTG
1 AAAATTACCGAAATACCCTTGATTTG
19423442 TAGATTTACC
Statistics
Matches: 154, Mismatches: 26, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
80 16 0.10
81 137 0.89
82 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (80 bp):
AAAATTACCGAAATACCCTTGATTTGGAAAATTACCGAAATACCTCAATTTGTAAAATTACCAAA
ATACCACTAGTTTGT
Done.