Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 80 of 345
Found at i:21999261 original size:93 final size:93
Alignment explanation
Indices: 21999154--21999324 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
21999144 GCCCCTAAGT
* *
21999154 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
21999219 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
21999247 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
21999312 CGAGTTCGGATGC
66 CGAGTTCGGATGC
21999325 TCAACCGTCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:21999321 original size:46 final size:46
Alignment explanation
Indices: 21999149--21999321 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
21999139 AACCCGCCCC
* * *
21999149 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
21999195 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
21999243 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
21999288 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
21999322 TGCTCAACCG
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:22002166 original size:3 final size:3
Alignment explanation
Indices: 22002150--22002345 Score: 122
Period size: 3 Copynumber: 65.3 Consensus size: 3
22002140 ATGTTTAGAG
* *
22002150 TAT TAT TACA TAT TAT TAT TAT TAT TATT TAT TAT TAT TAT TAT TAC
1 TAT TAT TA-T TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * ** ** *
22002197 TAT TAC TCT TAT TATT TAT TAT TAT CGT TGC TAT T-T CTAT TAT TGT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
*
22002243 T-T T-T CTAT TAT TAT T-T ATAT TAT TGT T-T TCAT TAT TCAT TAT T-T
1 TAT TAT -TAT TAT TAT TAT -TAT TAT TAT TAT T-AT TAT T-AT TAT TAT
* * *
22002287 TAT TGT TAT TAT TAT T-T TAT TAT TAT T-T T-T CTGT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
22002330 TAT TAA TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
22002346 CCTATTAATG
Statistics
Matches: 154, Mismatches: 23, Indels: 32
0.74 0.11 0.15
Matches are distributed among these distances:
2 14 0.09
3 123 0.80
4 17 0.11
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:22002178 original size:22 final size:21
Alignment explanation
Indices: 22002150--22002352 Score: 102
Period size: 20 Copynumber: 9.7 Consensus size: 21
22002140 ATGTTTAGAG
22002150 TATTATTACATATTATTATTAT
1 TATTATTAC-TATTATTATTAT
*
22002172 TATTATTTATTATTATTATTAT
1 TATTA-TTACTATTATTATTAT
* *
22002194 TACTATTACTCTTATTATTTAT
1 TATTATTACTATTATTA-TTAT
*
22002216 TATTATCGTTGCTATT-TCTATTAT
1 TATTA---TTACTATTAT-TATTAT
* *
22002240 TGTT-TTTCTATTATTATT-T
1 TATTATTACTATTATTATTAT
* *
22002259 ATATTATT-GT-TT-TCATTAT
1 -TATTATTACTATTATTATTAT
* *
22002278 TCATTATT-TTATTGTTATTAT
1 T-ATTATTACTATTATTATTAT
*
22002299 TATT-TTATTATTATT-TT-T
1 TATTATTACTATTATTATTAT
* ** *
22002317 CTGTTATTGTTATTATTAATAT
1 -TATTATTACTATTATTATTAT
*
22002339 TATTATTCCTATTA
1 TATTATTACTATTA
22002353 ATGTATCATC
Statistics
Matches: 142, Mismatches: 21, Indels: 37
0.71 0.10 0.19
Matches are distributed among these distances:
18 6 0.04
19 18 0.13
20 37 0.26
21 32 0.23
22 30 0.21
23 3 0.02
24 8 0.06
25 8 0.06
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.64
Consensus pattern (21 bp):
TATTATTACTATTATTATTAT
Found at i:22002249 original size:14 final size:14
Alignment explanation
Indices: 22002230--22002324 Score: 65
Period size: 14 Copynumber: 6.8 Consensus size: 14
22002220 ATCGTTGCTA
*
22002230 TTTCTATTATTGTT
1 TTTCTATTATTATT
22002244 TTTCTATTATTA--
1 TTTCTATTATTATT
* *
22002256 TTTATATTATT-GT
1 TTTCTATTATTATT
22002269 TTTCATTATTCATTATT
1 TTTC--TATT-ATTATT
*
22002286 TTAT-TGTTATTATT
1 TT-TCTATTATTATT
22002300 ATTT-TATTATTATT
1 -TTTCTATTATTATT
*
22002314 TTTCTGTTATT
1 TTTCTATTATT
22002325 GTTATTATTA
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
12 10 0.15
13 6 0.09
14 33 0.51
15 9 0.14
16 3 0.05
17 3 0.05
18 1 0.02
ACGTcount: A:0.21, C:0.05, G:0.04, T:0.69
Consensus pattern (14 bp):
TTTCTATTATTATT
Found at i:22002302 original size:17 final size:17
Alignment explanation
Indices: 22002274--22002334 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
22002264 ATTGTTTTCA
22002274 TTATTCATTATTTTATTG
1 TTATT-ATTATTTTATTG
*
22002292 TTATTATTATTTTATTA
1 TTATTATTATTTTATTG
* * *
22002309 TTATTTTTCTGTTATTG
1 TTATTATTATTTTATTG
22002326 TTATTATTA
1 TTATTATTA
22002335 ATATTATTAT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
17 31 0.86
18 5 0.14
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTATTATTATTTTATTG
Found at i:22007500 original size:15 final size:14
Alignment explanation
Indices: 22007463--22007516 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
22007453 AAAAGTGCAT
22007463 ACATAATA-ATACTA
1 ACATAATATATA-TA
22007477 A-AT-ATATATATA
1 ACATAATATATATA
22007489 TACATAATATATATA
1 -ACATAATATATATA
*
22007504 AAATGAATATATA
1 ACAT-AATATATA
22007517 CAATACAGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
12 5 0.15
13 6 0.18
14 6 0.18
15 17 0.50
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (14 bp):
ACATAATATATATA
Found at i:22007641 original size:25 final size:25
Alignment explanation
Indices: 22007613--22007669 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
22007603 ATAATAATAA
* *
22007613 TAAAAGTATATACACAAAATAGTGT
1 TAAAAATACATACACAAAATAGTGT
* * *
22007638 TAAAAATACATACATAATATAGTTAT
1 TAAAAATACATACACAAAATAG-TGT
22007664 TAAAAA
1 TAAAAA
22007670 ATATATATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (25 bp):
TAAAAATACATACACAAAATAGTGT
Found at i:22007662 original size:23 final size:22
Alignment explanation
Indices: 22007580--22007658 Score: 54
Period size: 25 Copynumber: 3.5 Consensus size: 22
22007570 CATAAATATG
22007580 TACAT-ATATATT-AAAATAAA
1 TACATAATATATTAAAAATAAA
* *
22007600 TACATAATAATAATAAAAGTATATA
1 TACATAAT-ATATTAAAA--ATAAA
* * * *
22007625 CACAAAATAGTGTTAAAAATACA
1 TACATAATA-TATTAAAAATAAA
22007648 TACATAATATA
1 TACATAATATA
22007659 GTTATTAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 10
0.68 0.16 0.16
Matches are distributed among these distances:
20 5 0.12
21 2 0.05
22 5 0.12
23 14 0.33
24 1 0.02
25 16 0.37
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.30
Consensus pattern (22 bp):
TACATAATATATTAAAAATAAA
Found at i:22007781 original size:19 final size:18
Alignment explanation
Indices: 22007732--22007783 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 18
22007722 ATAATGCTGC
22007732 ATAAACATATACATATAT
1 ATAAACATATACATATAT
*
22007750 ATAAAAGATATATACATATAT
1 AT--AA-ACATATACATATAT
22007771 AGTAAACATATAC
1 A-TAAACATATAC
22007784 TACTAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 2 0.07
19 7 0.25
20 4 0.14
21 14 0.50
22 1 0.04
ACGTcount: A:0.56, C:0.10, G:0.04, T:0.31
Consensus pattern (18 bp):
ATAAACATATACATATAT
Found at i:22007781 original size:21 final size:21
Alignment explanation
Indices: 22007738--22007782 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
22007728 CTGCATAAAC
*
22007738 ATATACATATATATAAAAGAT
1 ATATACATATATATAAAACAT
22007759 ATATACATATATAGT-AAACAT
1 ATATACATATATA-TAAAACAT
22007780 ATA
1 ATA
22007783 CTACTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (21 bp):
ATATACATATATATAAAACAT
Found at i:22008046 original size:2 final size:2
Alignment explanation
Indices: 22008039--22008079 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
22008029 TATGGTATTA
22008039 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22008080 ACATAGTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22008334 original size:23 final size:25
Alignment explanation
Indices: 22008300--22008363 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 25
22008290 TACAATATAG
* *
22008300 TATTAGAA-ATATACATAC-AATAG
1 TATTAAAAGATATACATACTAATAA
*
22008323 TA-TAAAAGATATATA-ACTAATAA
1 TATTAAAAGATATACATACTAATAA
*
22008346 TATTAAAATATATACATA
1 TATTAAAAGATATACATA
22008364 ATGTCTATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
22 6 0.19
23 14 0.44
24 11 0.34
25 1 0.03
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.33
Consensus pattern (25 bp):
TATTAAAAGATATACATACTAATAA
Found at i:22008656 original size:21 final size:21
Alignment explanation
Indices: 22008632--22008676 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
22008622 GTACTAGTAA
*
22008632 TAATAATAATACTAAAATAAT
1 TAATAATAATAATAAAATAAT
** *
22008653 TAATTTTAATAATAAAGTAAT
1 TAATAATAATAATAAAATAAT
22008674 TAA
1 TAA
22008677 AAAGGATCGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
TAATAATAATAATAAAATAAT
Found at i:22010424 original size:88 final size:87
Alignment explanation
Indices: 22010235--22010462 Score: 248
Period size: 88 Copynumber: 2.6 Consensus size: 87
22010225 TCCTGACCTT
* ** *
22010235 AACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAAAACAGACATT-AAAAACAGAAATTGAAA
1 AACTCACCTCTCGCAATATGAGTTGA-T-TTT-TGAAAACAGA-ATTGAAAAAAAGAAATTGAAA
* *
22010299 ATAGCTCAGCTCGTGAGCCCATGCTC
62 ATACCTCAGCTCGTGAGCCCAGGCTC
* **
22010325 AACTCAACTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGAAAAAAAGATTTTGAAAATA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAA-TTGAAAAAAAGAAATTGAAAATA
22010390 CCTC-GACAT-GTGA-CCCAAGGCTC
65 CCTCAG-C-TCGTGAGCCC-AGGCTC
*
22010413 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACA-GAATTGAAAA
22010463 TACCTCAGCG
Statistics
Matches: 120, Mismatches: 11, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
86 1 0.01
87 14 0.12
88 64 0.53
89 15 0.12
90 26 0.22
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.27
Consensus pattern (87 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTGAAAAAAAGAAATTGAAAATAC
CTCAGCTCGTGAGCCCAGGCTC
Found at i:22010577 original size:78 final size:73
Alignment explanation
Indices: 22010381--22010673 Score: 365
Period size: 74 Copynumber: 3.9 Consensus size: 73
22010371 AAAAAAGATT
* *
22010381 TTGAAAATACCTC-GACATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 TTGAAAATACCTCAG-C--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
22010445 AAAAACATAAA
63 AAAAGCAGAAA
*
22010456 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA
22010521 AAGCAGAAA
65 AAGCAGAAA
* *
22010530 TTGAAAAGAAATACCTCAGTGTGTCCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTG---A-AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
22010595 TG-AAAGATAGAAA
61 TGAAAAG-CAGAAA
* * ** *
22010608 TTGAAAATACCTGAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
22010673 A
66 A
22010674 TAGAAATAAA
Statistics
Matches: 194, Mismatches: 16, Indels: 17
0.85 0.07 0.07
Matches are distributed among these distances:
73 43 0.22
74 66 0.34
75 15 0.08
76 1 0.01
77 5 0.03
78 64 0.33
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
AGCAGAAA
Found at i:22010639 original size:152 final size:150
Alignment explanation
Indices: 22010398--22010673 Score: 444
Period size: 152 Copynumber: 1.8 Consensus size: 150
22010388 TACCTCGACA
*
22010398 TGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAA
1 TGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
* *
22010463 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGA
66 TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTGAAAAGCAGA
22010528 AATTGAAAAGAAATACCTCAG
130 AATTGAAAAGAAATACCTCAG
* * * * *
22010549 TGTGTCCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGATAGAAATTGAAA
1 TGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAA
* *
22010614 ATACCTGAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAA
65 ATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAA
22010674 TAGAAATAAA
Statistics
Matches: 114, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
151 48 0.42
152 66 0.58
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (150 bp):
TGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAGCAGAA
ATTGAAAAGAAATACCTCAG
Found at i:22010662 original size:74 final size:72
Alignment explanation
Indices: 22010407--22010680 Score: 377
Period size: 78 Copynumber: 3.7 Consensus size: 72
22010397 ATGTGACCCA
*
22010407 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTGAAAATACCTCAGC
22010472 GTGTCCTG
65 GTGTCCTG
22010480 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAAGAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA-CAGAAATTG---A-AAATACC
* *
22010545 TCAGTGTGTCCCG
60 TCAGCGTGTCCTG
* * * *
22010558 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGATAGAAATTGAAAATACCTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAGAAATTGAAAATACCTCAG
*
22010623 CGTGTCTTG
64 CGTGTCCTG
* *
22010632 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAATAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
22010681 AAAAACATCA
Statistics
Matches: 182, Mismatches: 12, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
72 8 0.04
73 45 0.25
74 59 0.32
75 1 0.01
77 1 0.01
78 67 0.37
79 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.30
Consensus pattern (72 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAGCG
TGTCCTG
Found at i:22019010 original size:22 final size:22
Alignment explanation
Indices: 22018982--22019026 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
22018972 AATGGATGAA
22018982 TGAATAAATGACAAATGAATGT
1 TGAATAAATGACAAATGAATGT
* *
22019004 TGAATAACTGACGAATGAATGT
1 TGAATAAATGACAAATGAATGT
22019026 T
1 T
22019027 AGTCATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATGT
Found at i:22022894 original size:15 final size:15
Alignment explanation
Indices: 22022876--22022927 Score: 81
Period size: 15 Copynumber: 3.5 Consensus size: 15
22022866 AATAATACTA
22022876 AATATATATATACAT
1 AATATATATATACAT
22022891 AATATATATATACAT
1 AATATATATATACAT
22022906 AATATATATA-A-AT
1 AATATATATATACAT
22022919 GAATATATA
1 -AATATATA
22022928 CAATACATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
13 2 0.06
14 9 0.25
15 25 0.69
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (15 bp):
AATATATATATACAT
Found at i:22023007 original size:20 final size:22
Alignment explanation
Indices: 22022991--22023037 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
22022981 CATAAATATG
22022991 TACAT-AT-ATATTAAAATAAA
1 TACATAATAATATTAAAATAAA
*
22023011 TACATAATAATATTAAAAGTATA
1 TACATAATAATATTAAAA-TAAA
22023034 TACA
1 TACA
22023038 CAAAATAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 5 0.22
21 2 0.09
22 9 0.39
23 7 0.30
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.34
Consensus pattern (22 bp):
TACATAATAATATTAAAATAAA
Found at i:22023044 original size:22 final size:22
Alignment explanation
Indices: 22022998--22023044 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
22022988 ATGTACATAT
*
22022998 ATATTAAAATAAATACATAATA
1 ATATTAAAATAAATACACAATA
*
22023020 ATATTAAAAGTATATACACAA-A
1 ATATTAAAA-TAAATACACAATA
22023042 ATA
1 ATA
22023045 GTGTTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (22 bp):
ATATTAAAATAAATACACAATA
Found at i:22023073 original size:23 final size:22
Alignment explanation
Indices: 22022991--22023069 Score: 63
Period size: 25 Copynumber: 3.5 Consensus size: 22
22022981 CATAAATATG
22022991 TACAT-ATATATT-AAAATAAA
1 TACATAATATATTAAAAATAAA
*
22023011 TACATAATAATATTAAAAGTATATA
1 TACATAAT-ATATTAAAA--ATAAA
* * * *
22023036 CACAAAATAGTGTTAAAAATACA
1 TACATAATA-TATTAAAAATAAA
22023059 TACATAATATA
1 TACATAATATA
22023070 GTTATTAATA
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
20 5 0.11
21 2 0.04
22 6 0.13
23 14 0.31
24 1 0.02
25 17 0.38
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.32
Consensus pattern (22 bp):
TACATAATATATTAAAAATAAA
Found at i:22023181 original size:21 final size:21
Alignment explanation
Indices: 22023155--22023199 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
22023145 CTGCATAAAC
* * *
22023155 ATATACATATATATTAAAGAT
1 ATATACACATATAGTAAACAT
22023176 ATATACACATATAGTAAACAT
1 ATATACACATATAGTAAACAT
22023197 ATA
1 ATA
22023200 CTAATAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.33
Consensus pattern (21 bp):
ATATACACATATAGTAAACAT
Found at i:22023198 original size:19 final size:19
Alignment explanation
Indices: 22023150--22023200 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 19
22023140 TAATACTGCA
* *
22023150 TAAACATATACATATATAT
1 TAAACATATACACATATAG
*
22023169 TAAAGATATATACACATATAG
1 T-AA-ACATATACACATATAG
22023190 TAAACATATAC
1 TAAACATATAC
22023201 TAATAATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 8 0.31
20 4 0.15
21 14 0.54
ACGTcount: A:0.53, C:0.12, G:0.04, T:0.31
Consensus pattern (19 bp):
TAAACATATACACATATAG
Found at i:22023209 original size:3 final size:3
Alignment explanation
Indices: 22023201--22023230 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
22023191 AAACATATAC
22023201 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22023231 GATGTATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:22023570 original size:11 final size:9
Alignment explanation
Indices: 22023554--22023597 Score: 63
Period size: 9 Copynumber: 4.8 Consensus size: 9
22023544 TAACATTAAT
22023554 AATATATATC
1 AATATATA-C
22023564 AAATATATAC
1 -AATATATAC
22023574 AATATATAC
1 AATATATAC
22023583 AATATATAC
1 AATATATAC
22023592 -ATATAT
1 AATATAT
22023598 TTAGATATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
8 6 0.18
9 18 0.55
10 1 0.03
11 8 0.24
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (9 bp):
AATATATAC
Found at i:22024060 original size:21 final size:21
Alignment explanation
Indices: 22024036--22024080 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
22024026 GTACTAGTAA
*
22024036 TAATAATAATACTAAAATAAT
1 TAATAATAATAATAAAATAAT
** *
22024057 TAATTTTAATAATAAAGTAAT
1 TAATAATAATAATAAAATAAT
22024078 TAA
1 TAA
22024081 AAAGGATCGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
TAATAATAATAATAAAATAAT
Found at i:22027007 original size:26 final size:26
Alignment explanation
Indices: 22026971--22027080 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
22026961 ACATAAATTC
22026971 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
22026997 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
22027023 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
22027049 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
22027075 TTATCA
1 TTATCA
22027081 ATTTGTATTA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:22028881 original size:126 final size:126
Alignment explanation
Indices: 22028645--22029168 Score: 647
Period size: 126 Copynumber: 4.2 Consensus size: 126
22028635 GGCCAAGCAG
* * * * * * * *
22028645 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTTAGTAATTTTCCTGATAGTCCAT
1 GAACTACTGTAGAAAAAAAGCGTCCACGTGAGAGC-TTTTTTCAGTAATTTTGCTAACAGTGCAT
*
22028710 CTTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAT
65 CCTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAT
* * * * * * * *
22028772 GTATTACTGTATAAAAAGAGCGTTCACGTGGGAGCTTTCTTCAGTAATTTTGCTAATAGTGCATC
1 GAACTACTGTAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
* * * *
22028837 CTGCTTGAAGTGTTTTTGACACTATTTTTTCAAAATCGTATTCTCAAAATTATTTTTTCAA
66 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAT
* * *
22028898 GAACTACTGTAGAAAAAAAGCGTCCACGTAAGAGCTTTTTTTAGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
* * * * *
22028963 CTGCTTGAAGCATTTTTGACACTATTTTTTTAGAACCATCTTCTCAAAATTATTTTTT-TT
66 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAT
** *
22029023 GGAACTACTGTAGAAAAAAAAAGTCCACGTGAGAGTTTTTTTCAGTAATTTTGCTAACAGTGCAT
1 -GAACTACTGTAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTAACAGTGCAT
* * * * * *
22029088 CCTACTTGAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTGAAAATTAATTTTTC-T
65 CCTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAT
* *
22029149 AAAACTACTATAGAAAAAAA
1 -GAACTACTGTAGAAAAAAA
22029169 ATCCTTGTCA
Statistics
Matches: 343, Mismatches: 52, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
126 313 0.91
127 30 0.09
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAT
Found at i:22029258 original size:7 final size:7
Alignment explanation
Indices: 22029248--22029272 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22029238 TTGTAAATTA
22029248 TAAACCC
1 TAAACCC
22029255 TAAACCC
1 TAAACCC
22029262 TAAACCC
1 TAAACCC
22029269 TAAA
1 TAAA
22029273 ACTGAACCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCC
Found at i:22046505 original size:26 final size:26
Alignment explanation
Indices: 22046476--22046585 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
22046466 CATGAAATTC
22046476 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
22046502 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
22046528 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
22046554 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
22046580 TTATCA
1 TTATCA
22046586 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:22047890 original size:18 final size:17
Alignment explanation
Indices: 22047867--22047929 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
22047857 TATTTGTAAC
22047867 ATTATATATATAAATTTT
1 ATTATAT-TATAAATTTT
*
22047885 ATTATATGTTATATATTTTT
1 ATTATA--TTATA-AATTTT
**
22047905 ATTATATTATTTATTTT
1 ATTATATTATAAATTTT
22047922 ATTATATT
1 ATTATATT
22047930 TTTATATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 12 0.32
18 10 0.26
19 4 0.11
20 12 0.32
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
ATTATATTATAAATTTT
Found at i:22047897 original size:23 final size:20
Alignment explanation
Indices: 22047881--22047928 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 20
22047871 TATATATAAA
22047881 TTTTATTATATGTTATATAT
1 TTTTATTATATGTTATATAT
*
22047901 TTTTATTATA--TTATTTA-
1 TTTTATTATATGTTATATAT
22047918 TTTTATTATAT
1 TTTTATTATAT
22047929 TTTTATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 10 0.38
18 6 0.23
20 10 0.38
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTATTATATGTTATATAT
Found at i:22047906 original size:20 final size:18
Alignment explanation
Indices: 22047867--22047936 Score: 79
Period size: 18 Copynumber: 3.8 Consensus size: 18
22047857 TATTTGTAAC
* *
22047867 ATTATATATATAAATTTT
1 ATTATATTTATATATTTT
22047885 ATTATATGTTATATATTTTT
1 ATTATAT-TTATATA-TTTT
*
22047905 ATTATA-TTATTTATTTT
1 ATTATATTTATATATTTT
*
22047922 ATTATATTTTTATAT
1 ATTATATTTATATAT
22047937 GTAAAATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 10 0.23
18 19 0.43
19 5 0.11
20 10 0.23
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (18 bp):
ATTATATTTATATATTTT
Found at i:22047935 original size:25 final size:28
Alignment explanation
Indices: 22047883--22047936 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
22047873 TATATAAATT
*
22047883 TTATTATATGTTATATATTTTTATTATA
1 TTATTATATGTTATATATATTTATTATA
*
22047911 TTATT-TATTTTAT-TATATTT-TTATA
1 TTATTATATGTTATATATATTTATTATA
22047936 T
1 T
22047937 GTAAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.25
26 6 0.25
27 7 0.29
28 5 0.21
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (28 bp):
TTATTATATGTTATATATATTTATTATA
Found at i:22049136 original size:22 final size:20
Alignment explanation
Indices: 22049111--22049158 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
22049101 TTGTTTAGTA
*
22049111 TTATTTTTATTTGTTTTAATAT
1 TTATTTTTATGT-TTTTAA-AT
22049133 TTATTTTTATGTTTTTAAAT
1 TTATTTTTATGTTTTTAAAT
*
22049153 ATATTT
1 TTATTT
22049159 GATTTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.29
21 6 0.25
22 11 0.46
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (20 bp):
TTATTTTTATGTTTTTAAAT
Found at i:22049157 original size:20 final size:22
Alignment explanation
Indices: 22049104--22049158 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
22049094 TTAAGAATTG
* *
22049104 TTTAGTAT-TATTTTTATTTGT
1 TTTAATATATATTTTTATGTGT
*
22049125 TTTAATATTTATTTTTATGT-T
1 TTTAATATATATTTTTATGTGT
22049146 TTTAA-ATATATTT
1 TTTAATATATATTT
22049159 GATTTATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 13 0.43
22 10 0.33
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.69
Consensus pattern (22 bp):
TTTAATATATATTTTTATGTGT
Found at i:22049175 original size:26 final size:24
Alignment explanation
Indices: 22049129--22049187 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
22049119 ATTTGTTTTA
*
22049129 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
22049153 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
*
22049179 -TTTTTATTT
1 ATATTTATTT
22049188 AATGAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.32
25 8 0.26
26 13 0.42
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:22049311 original size:11 final size:11
Alignment explanation
Indices: 22049291--22049323 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
22049281 GCCCATATTT
22049291 CGGG-CCGGGC
1 CGGGCCCGGGC
22049301 CGGGCCCGGGC
1 CGGGCCCGGGC
22049312 CGGGCCCGGGC
1 CGGGCCCGGGC
22049323 C
1 C
22049324 TAGTATACGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.18
11 18 0.82
ACGTcount: A:0.00, C:0.45, G:0.55, T:0.00
Consensus pattern (11 bp):
CGGGCCCGGGC
Found at i:22052126 original size:14 final size:14
Alignment explanation
Indices: 22052107--22052136 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22052097 AATGCACAGT
22052107 TTCCATTAAAAGAA
1 TTCCATTAAAAGAA
*
22052121 TTCCATTGAAAGAA
1 TTCCATTAAAAGAA
22052135 TT
1 TT
22052137 TCATGTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (14 bp):
TTCCATTAAAAGAA
Found at i:22053842 original size:15 final size:15
Alignment explanation
Indices: 22053796--22053842 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
22053786 GTTATATATA
*
22053796 ATAATATAACATGAAT
1 ATAATATAAAAT-AAT
*
22053812 AAAATATAAAGA-AAT
1 ATAATATAAA-ATAAT
22053827 ATAATATAAAATAAT
1 ATAATATAAAATAAT
22053842 A
1 A
22053843 AGAATATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
14 1 0.04
15 16 0.62
16 8 0.31
17 1 0.04
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (15 bp):
ATAATATAAAATAAT
Found at i:22053915 original size:22 final size:21
Alignment explanation
Indices: 22053879--22053932 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
22053869 AAAATATGGT
* *
22053879 AAAATAATTAGTATAAAAAAA
1 AAAATAAATAATATAAAAAAA
* *
22053900 CAAAATAAATAATATATAATAA
1 -AAAATAAATAATATAAAAAAA
*
22053922 AAAATATATAA
1 AAAATAAATAA
22053933 GAAAGATAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAATAAATAATATAAAAAAA
Found at i:22053922 original size:14 final size:14
Alignment explanation
Indices: 22053903--22053932 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22053893 AAAAAAACAA
*
22053903 AATAAATAATATAT
1 AATAAAAAATATAT
22053917 AATAAAAAATATAT
1 AATAAAAAATATAT
22053931 AA
1 AA
22053933 GAAAGATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAAAATATAT
Found at i:22054215 original size:21 final size:19
Alignment explanation
Indices: 22054183--22054221 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
22054173 TTTCATAAGA
22054183 ATATTATAAAATAAATAAT
1 ATATTATAAAATAAATAAT
*
22054202 ATATATATATAAATATATAA
1 ATAT-TATA-AAATAAATAA
22054222 ATAAAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATATTATAAAATAAATAAT
Found at i:22054630 original size:22 final size:21
Alignment explanation
Indices: 22054599--22054640 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22054589 ATTATGGCTA
22054599 AATTAGAAATAAATAAAAATGG
1 AATTAGAAAT-AATAAAAATGG
* *
22054621 AATTATAAATATTAAAAATG
1 AATTAGAAATAATAAAAATG
22054641 TAAGAGGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.29
Consensus pattern (21 bp):
AATTAGAAATAATAAAAATGG
Found at i:22056626 original size:20 final size:21
Alignment explanation
Indices: 22056603--22056645 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
22056593 TAATTTTAGA
22056603 TATAATTATA-ACTTTTTTTT
1 TATAATTATAGACTTTTTTTT
* * *
22056623 TATATTTTTAGAGTTTTTTTT
1 TATAATTATAGACTTTTTTTT
22056644 TA
1 TA
22056646 GATATTTTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (21 bp):
TATAATTATAGACTTTTTTTT
Found at i:22061091 original size:75 final size:74
Alignment explanation
Indices: 22060968--22061117 Score: 246
Period size: 75 Copynumber: 2.0 Consensus size: 74
22060958 AGTAGTAAAC
* *
22060968 AATGAACCCGGTAGGCATAGGGTGGTAACCCAACTAGAATCAGTTATGGGAATGACATACTGATA
1 AATGAACCCGGTAGGCATAGGGTGGTAACCCAACTAGAATCAGCTATGGGAATGACATACCGATA
22061033 ATACCTTGT
66 ATACCTTGT
* * *
22061042 AATGAAGCCGGTAGGGCATAGGGTGGTAACCCAATTGGAATCAGCTATGGGAATGACATACCGAT
1 AATGAACCCGGTA-GGCATAGGGTGGTAACCCAACTAGAATCAGCTATGGGAATGACATACCGAT
22061107 AATACCTTGT
65 AATACCTTGT
22061117 A
1 A
22061118 TAGAGGCAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
74 12 0.17
75 58 0.83
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.23
Consensus pattern (74 bp):
AATGAACCCGGTAGGCATAGGGTGGTAACCCAACTAGAATCAGCTATGGGAATGACATACCGATA
ATACCTTGT
Found at i:22066566 original size:22 final size:22
Alignment explanation
Indices: 22066540--22066587 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
22066530 TCTAAATTAA
*
22066540 TAATTAAATCAATG-AATTATAG
1 TAATTAAAT-AATGCAATTAAAG
*
22066562 TAATTAAATATTGCAATTAAAG
1 TAATTAAATAATGCAATTAAAG
22066584 TAAT
1 TAAT
22066588 GATCATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (22 bp):
TAATTAAATAATGCAATTAAAG
Found at i:22067960 original size:23 final size:24
Alignment explanation
Indices: 22067905--22067960 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
22067895 TTCAACTTTT
*
22067905 TATTTTAAAAGATAAATTTAATAA
1 TATTTTAAAAGATAAAATTAATAA
* *
22067929 TATTATAAAA-ATAAAAATTATTAA
1 TATTTTAAAAGAT-AAAATTAATAA
22067953 -ATTTTAAA
1 TATTTTAAA
22067961 CTTGTATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (24 bp):
TATTTTAAAAGATAAAATTAATAA
Found at i:22077958 original size:6 final size:6
Alignment explanation
Indices: 22077947--22077972 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22077937 GATATCAATG
22077947 TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
22077973 CCCCAAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:22078574 original size:35 final size:35
Alignment explanation
Indices: 22078535--22078609 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
22078525 TGATTGGCGA
*
22078535 GGCCAGGTCATGCGCACAAGACACGGCCGTGTGAT
1 GGCCAGGTCATGCGCACAAGACACGACCGTGTGAT
*
22078570 GGCCAGGTCATGCGCACAAGACACGACTGTGTGAT
1 GGCCAGGTCATGCGCACAAGACACGACCGTGTGAT
*
22078605 AGCCA
1 GGCCA
22078610 AGTAGGCCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.25, C:0.28, G:0.32, T:0.15
Consensus pattern (35 bp):
GGCCAGGTCATGCGCACAAGACACGACCGTGTGAT
Found at i:22079334 original size:34 final size:34
Alignment explanation
Indices: 22079287--22079354 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
22079277 ACATATTTGA
22079287 TACTGAAACTGAAATGGGCTAAGGCTCG-GACTGC
1 TACTGAAACTGAAATGGGCTAAGGC-CGAGACTGC
* *
22079321 TACTGAAATTGAAATGGGCTTAGGCCGAGACTGC
1 TACTGAAACTGAAATGGGCTAAGGCCGAGACTGC
22079355 ATTTGACCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 2 0.06
34 29 0.94
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (34 bp):
TACTGAAACTGAAATGGGCTAAGGCCGAGACTGC
Found at i:22085738 original size:19 final size:19
Alignment explanation
Indices: 22085710--22085753 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
22085700 TTTGGACAAC
*
22085710 TTTTAATTATATTATAACA
1 TTTTATTTATATTATAACA
*
22085729 TTTTATTTATATTTTAACA
1 TTTTATTTATATTATAACA
22085748 TTTTAT
1 TTTTAT
22085754 AACATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTATTTATATTATAACA
Found at i:22085846 original size:9 final size:9
Alignment explanation
Indices: 22085822--22085874 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
22085812 AAAACTCTTA
*
22085822 ATAATTATTG
1 ATAATT-TTT
22085832 ATAATTTTT
1 ATAATTTTT
22085841 ATAATTTTT
1 ATAATTTTT
*
22085850 AT-AGTTTT
1 ATAATTTTT
22085858 ATAA-TTTT
1 ATAATTTTT
*
22085866 ACAATTTTT
1 ATAATTTTT
22085875 TACAGTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
8 14 0.37
9 18 0.47
10 6 0.16
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (9 bp):
ATAATTTTT
Found at i:22085857 original size:8 final size:8
Alignment explanation
Indices: 22085822--22085873 Score: 50
Period size: 8 Copynumber: 6.0 Consensus size: 8
22085812 AAAACTCTTA
22085822 ATAATTATT
1 ATAATT-TT
22085831 GATAATTTTT
1 -ATAA-TTTT
22085841 ATAATTTTT
1 ATAA-TTTT
*
22085850 ATAGTTTT
1 ATAATTTT
22085858 ATAATTTT
1 ATAATTTT
*
22085866 ACAATTTT
1 ATAATTTT
22085874 TTACAGTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 18 0.47
9 12 0.32
10 6 0.16
11 2 0.05
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (8 bp):
ATAATTTT
Found at i:22085874 original size:26 final size:26
Alignment explanation
Indices: 22085832--22085883 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22085822 ATAATTATTG
* *
22085832 ATAATTTTTATAATTTTTATAGTTTT
1 ATAATTTTTACAATTTTTACAGTTTT
22085858 ATAA-TTTTACAATTTTTTACAGTTTT
1 ATAATTTTTACAA-TTTTTACAGTTTT
22085884 TTTTTTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (26 bp):
ATAATTTTTACAATTTTTACAGTTTT
Found at i:22092858 original size:25 final size:23
Alignment explanation
Indices: 22092813--22092857 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
22092803 ATTTTTTATT
*
22092813 TTTTTTATATATATATGTATATG
1 TTTTTAATATATATATGTATATG
*
22092836 TTTTTAATATATTTATGTATAT
1 TTTTTAATATATATATGTATAT
22092858 ACTTATGTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (23 bp):
TTTTTAATATATATATGTATATG
Found at i:22092982 original size:24 final size:25
Alignment explanation
Indices: 22092941--22092996 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
22092931 GATGTATATC
*
22092941 TATATATTTTTCGTATATAT-TATG-
1 TATATATTTTTCGAATAT-TGTATGT
22092965 TATATATGTTTTC-AATATTGTATGT
1 TATATAT-TTTTCGAATATTGTATGT
22092990 TATATAT
1 TATATAT
22092997 ATTATTGTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 15 0.54
25 12 0.43
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (25 bp):
TATATATTTTTCGAATATTGTATGT
Found at i:22093077 original size:19 final size:19
Alignment explanation
Indices: 22093053--22093089 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22093043 CTATTTTATA
*
22093053 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
22093072 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
22093090 ATTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:22093178 original size:9 final size:9
Alignment explanation
Indices: 22093160--22093199 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
22093150 TCATTTCTAA
22093160 TATATATAT
1 TATATATAT
*
22093169 TATATGTAT
1 TATATATAT
*
22093178 TTTATATAT
1 TATATATAT
22093187 TATATATA-
1 TATATATAT
22093195 TATAT
1 TATAT
22093200 TTAATGTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
8 5 0.19
9 22 0.81
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (9 bp):
TATATATAT
Found at i:22093184 original size:22 final size:22
Alignment explanation
Indices: 22093159--22093201 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
22093149 ATCATTTCTA
*
22093159 ATATA-TATATTATATGTATTTT
1 ATATATTATA-TATATATATTTT
22093181 ATATATTATATATATATATTT
1 ATATATTATATATATATATTT
22093202 AATGTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATATATTATATATATATATTTT
Found at i:22093194 original size:11 final size:11
Alignment explanation
Indices: 22093159--22093200 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
22093149 ATCATTTCTA
22093159 ATATATATATT
1 ATATATATATT
* *
22093170 ATATGTATTTT
1 ATATATATATT
22093181 ATATAT-TA-T
1 ATATATATATT
22093190 ATATATATATT
1 ATATATATATT
22093201 TAATGTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
9 7 0.28
10 3 0.12
11 15 0.60
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (11 bp):
ATATATATATT
Found at i:22093492 original size:37 final size:35
Alignment explanation
Indices: 22093427--22093496 Score: 81
Period size: 37 Copynumber: 1.9 Consensus size: 35
22093417 TTATATATAG
22093427 TATTATTTTCATACATTATCATATTTATTATTATACC
1 TATTATTTTCATA-ATTATCATATTTATT-TTATACC
22093464 TATTATTTTCACT-ATTATCACT-TATTATTTTAT
1 TATTATTTTCA-TAATTATCA-TAT-TTATTTTAT
22093497 TTTAATATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
36 12 0.40
37 17 0.57
38 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (35 bp):
TATTATTTTCATAATTATCATATTTATTTTATACC
Found at i:22093630 original size:25 final size:24
Alignment explanation
Indices: 22093602--22093657 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
22093592 GTTATATTTT
*
22093602 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
22093627 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
22093650 CACTATTA
1 CACTATTA
22093658 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:22105685 original size:75 final size:72
Alignment explanation
Indices: 22105487--22105694 Score: 301
Period size: 74 Copynumber: 2.8 Consensus size: 72
22105477 ATTTTGATAT
* * * *
22105487 TTTTCATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
1 TTTTAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGC
22105552 TGAGGTA
66 TGAGGTA
*
22105559 TTTTCAATCTAT-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACA
1 TTTT-AAT-T-TCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACA
22105623 CGCTGAGGTA
63 CGCTGAGGTA
*
22105633 GTTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGG
1 -TTTTAATTTCTGTT--TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGG
22105695 TCACATGTCG
Statistics
Matches: 122, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
72 5 0.04
73 6 0.05
74 62 0.51
75 49 0.40
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (72 bp):
TTTTAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGC
TGAGGTA
Found at i:22105869 original size:92 final size:92
Alignment explanation
Indices: 22105650--22105873 Score: 319
Period size: 90 Copynumber: 2.5 Consensus size: 92
22105640 TTTCTGTTCA
* * *
22105650 TCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGTCACATGTCGAGGTATTTAC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGACGAGGTATTTAC
** *
22105715 AATTTCCGTTTTTTCAATTTATGTTTT
66 AATTAACGTTTTTTCAATTTATGCTTT
* * * *
22105742 TC--AAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGATCACATGACGAGGTATTTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACATGACGAGGTATTTA
*
22105805 CAATTAATGTTTTTT-AATTTATGCTTT
65 CAATTAACGTTTTTTCAATTTATGCTTT
22105832 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
22105874 GGGACACGCT
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
90 49 0.43
91 29 0.25
92 37 0.32
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (92 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGACGAGGTATTTAC
AATTAACGTTTTTTCAATTTATGCTTT
Found at i:22105951 original size:71 final size:71
Alignment explanation
Indices: 22105836--22105975 Score: 192
Period size: 71 Copynumber: 2.0 Consensus size: 71
22105826 TGCTTTTCAA
** ** *
22105836 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTT-AATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACTGAGGTATT-TTCAATTT
*
22105900 TTGTTTC
65 CTGTTTC
* *
22105907 AAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTC
22105972 TGTT
66 TGTT
22105976 CAATTTATGT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
70 2 0.03
71 58 0.97
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTC
TGTTTC
Found at i:22106022 original size:86 final size:86
Alignment explanation
Indices: 22105903--22106281 Score: 365
Period size: 89 Copynumber: 4.5 Consensus size: 86
22105893 TTAATTTTTG
* **
22105903 TTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACAT-T-GAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATGTCGAGGTATTTTC
22105966 AATTTCTGTTCAATTTATGTT
66 AATTTCTGTTCAATTTATGTT
* * *
22105987 TTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACAC--GTTGAGGTACTT
1 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATGTCGAGGTATTT
22106050 TCAA--TC---T--A-TT-T-TT
64 TCAATTTCTGTTCAATTTATGTT
** * * * *
22106063 TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACATGTCGAGGTATTTAC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATGTCGAGGTATTTTC
*
22106128 AATTTCCGTTTTTCAATTTATGTT
66 AATTT-C--TGTTCAATTTATGTT
* * * * *
22106152 TTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGATCACATGTCGAGCTATTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-CACATGTCGAGGTATTTT
** * *
22106217 CAAAATCTGTTTTGCAAATTCTG-T
65 CAATTTCTG--TT-CAATTTATGTT
*
22106241 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
22106282 TTACTCACGT
Statistics
Matches: 240, Mismatches: 32, Indels: 41
0.77 0.10 0.13
Matches are distributed among these distances:
74 41 0.17
76 17 0.07
77 1 0.00
78 3 0.01
79 2 0.01
81 1 0.00
84 7 0.03
85 1 0.00
86 54 0.22
87 3 0.01
88 1 0.00
89 82 0.34
90 27 0.11
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (86 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATGTCGAGGTATTTTC
AATTTCTGTTCAATTTATGTT
Found at i:22106191 original size:163 final size:160
Alignment explanation
Indices: 22105726--22106194 Score: 565
Period size: 163 Copynumber: 2.9 Consensus size: 160
22105716 ATTTCCGTTT
* * * *
22105726 TTTCAATTTATGTTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGATCACA
1 TTTCAA-TTATTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACA
* * *
22105791 TGACGAGGTATTTTCAATTAAT-GTTTTTTAATTTATGCTTTTCAAAAAAATCAACTCATATTGC
64 TGTCGAGGTATTTTCAATT--TCGTTTTTCAATTTATGTTTTTC-AAAAAATCAACTCATATTGC
* **
22105855 GAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
126 AAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA
* * * ** * *
22105890 TTGTTAATT-TTTGTTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACAT
1 TT-TCAATTATTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAT
*
22105954 -T-GAGGTATTTTCAATTTC--TGTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCAAG
65 GTCGAGGTATTTTCAATTTCGTTTTTCAATTTATGTTTTTC-AAAAAATCAACTCATATTGCAAG
*
22106015 AGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
129 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTA
* *
22106047 CTTTCAATCTATTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCAC
1 -TTTCAAT-TATTTTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
* * *
22106112 ATGTCGAGGTATTTACAATTTCCGTTTTTCAATTTATGTTTTTC-AAAAATCAATTCATATTGCT
63 ATGTCGAGGTATTTTCAATTT-CGTTTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCA
*
22106176 AGAGGTGAATTGAGCCTCA
127 AGAGGTGAGTTGAGCCTCA
22106195 GGATCACATG
Statistics
Matches: 261, Mismatches: 33, Indels: 23
0.82 0.10 0.07
Matches are distributed among these distances:
157 72 0.28
158 4 0.02
159 6 0.02
160 56 0.21
161 1 0.00
162 20 0.08
163 77 0.30
164 4 0.02
165 21 0.08
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (160 bp):
TTTCAATTATTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATG
TCGAGGTATTTTCAATTTCGTTTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCAAGAG
GTGAGTTGAGCCTCAAGACACGCTGAGGTA
Found at i:22106239 original size:14 final size:13
Alignment explanation
Indices: 22106213--22106248 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
22106203 TGTCGAGCTA
22106213 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
22106226 TTTTGCAAATTCTG
1 TTTT-CAAAATCTG
22106240 TTTTCAAAA
1 TTTTCAAAA
22106249 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:22108319 original size:27 final size:27
Alignment explanation
Indices: 22108282--22108446 Score: 226
Period size: 27 Copynumber: 6.1 Consensus size: 27
22108272 AGCATGGCTG
* *
22108282 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
22108308 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
22108336 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
22108363 TCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
22108390 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
22108417 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
22108444 CCA
1 CCA
22108447 AAACGCTTCC
Statistics
Matches: 129, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
26 5 0.04
27 107 0.83
28 17 0.13
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:22110105 original size:26 final size:26
Alignment explanation
Indices: 22110069--22110178 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
22110059 CATGAAATTC
22110069 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
22110095 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
22110121 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
22110147 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
22110173 TTATCA
1 TTATCA
22110179 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:22111341 original size:25 final size:23
Alignment explanation
Indices: 22111296--22111340 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
22111286 TTTTTTTTTA
*
22111296 TTTTTTATATATATATGTATATG
1 TTTTTAATATATATATGTATATG
*
22111319 TTTTTAATATATTTATGTATAT
1 TTTTTAATATATATATGTATAT
22111341 ACTTATGTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (23 bp):
TTTTTAATATATATATGTATATG
Found at i:22111433 original size:30 final size:30
Alignment explanation
Indices: 22111378--22111452 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
22111368 TTTATCCCTA
*
22111378 ATAT-TTATGTATTATGTAAATA-TTTTAAT
1 ATATATTATGTA-TATCTAAATATTTTTAAT
* **
22111407 ATTATATTATGTATATCTATATATTTTTCGT
1 A-TATATTATGTATATCTAAATATTTTTAAT
22111438 ATATATTATGTATAT
1 ATATATTATGTATAT
22111453 ATATTTTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 25 0.64
31 13 0.33
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.56
Consensus pattern (30 bp):
ATATATTATGTATATCTAAATATTTTTAAT
Found at i:22111465 original size:24 final size:26
Alignment explanation
Indices: 22111424--22111481 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 26
22111414 TATGTATATC
*
22111424 TATATAT-TTTTCGTATATAT-TATG-
1 TATATATATTTTCGAATAT-TGTATGT
22111448 TATATATATTTTC-AATATTGTATGT
1 TATATATATTTTCGAATATTGTATGT
22111473 TATATATAT
1 TATATATAT
22111482 ATTATTGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 1 0.03
24 15 0.50
25 14 0.47
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (26 bp):
TATATATATTTTCGAATATTGTATGT
Found at i:22111562 original size:19 final size:19
Alignment explanation
Indices: 22111538--22111574 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22111528 CTATTTTATA
*
22111538 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
22111557 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
22111575 ATTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:22112287 original size:26 final size:26
Alignment explanation
Indices: 22112258--22112365 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
22112248 TGGTACAAAT
22112258 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
22112284 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
22112310 TGATAATGGGTTAGGTAAATGTTACA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
22112336 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
22112362 TGAT
1 TGAT
22112366 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:22114009 original size:27 final size:26
Alignment explanation
Indices: 22113960--22114100 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 26
22113950 AGGAAGCGTC
*
22113960 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
22113987 CTGGTGGCTCTGCTACATATATCTG-T
1 CTGGTGGCTCTGCCACA-ATATCTGAT
*
22114013 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTGAT
* *
22114041 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
22114068 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
*
22114095 TTGGTG
1 CTGGTG
22114101 ACTTCATCAC
Statistics
Matches: 98, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
26 9 0.09
27 86 0.88
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:22114039 original size:54 final size:54
Alignment explanation
Indices: 22113957--22114100 Score: 229
Period size: 54 Copynumber: 2.7 Consensus size: 54
22113947 TGGAGGAAGC
22113957 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTG-CTACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTC-ACATATATCT
22114011 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCT
* * *
22114065 GTTCTGGTGGCTCTGCCACAA-TATCTGTATTTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
22114101 ACTTCATCAC
Statistics
Matches: 85, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
53 6 0.07
54 78 0.92
55 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCT
Found at i:22114111 original size:54 final size:52
Alignment explanation
Indices: 22113957--22114118 Score: 211
Period size: 54 Copynumber: 3.0 Consensus size: 52
22113947 TGGAGGAAGC
22113957 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCTACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCT-C-ACATATATCT
22114011 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTC--TCACATATATCT
* * * *
22114065 GTTCTGGTGGCTCTGCCACAA-TATCTGTATTTGGTGACTTCATCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGC-TC-TCACATATATCT
22114118 G
1 G
22114119 GCAGCCTCGC
Statistics
Matches: 99, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
53 13 0.13
54 82 0.83
55 3 0.03
56 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (52 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTCACATATATCT
Found at i:22114112 original size:81 final size:79
Alignment explanation
Indices: 22113960--22114118 Score: 180
Period size: 81 Copynumber: 2.0 Consensus size: 79
22113950 AGGAAGCGTC
* *
22113960 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCTACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
22114025 GCCACAATTATCTGAT
66 -CCACAA-TATCTGAT
* * * **
22114041 CTGGTGGCTCTGTCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATTTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
22114104 -TCATCACAATATCTG
64 ATC--CACAATATCTG
22114119 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
79 1 0.01
80 17 0.25
81 49 0.73
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (79 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
CCACAATATCTGAT
Found at i:22115060 original size:21 final size:22
Alignment explanation
Indices: 22115035--22115076 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
22115025 TTACATATTT
22115035 ATTATTAT-ACCTATTATTTTC
1 ATTATTATCACCTATTATTTTC
*
22115056 ATTATTATCACTTATTATTTT
1 ATTATTATCACCTATTATTTT
22115077 ATTTTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTATTATCACCTATTATTTTC
Found at i:22115212 original size:25 final size:24
Alignment explanation
Indices: 22115184--22115239 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
22115174 GTTATATTTT
*
22115184 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
22115209 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
22115232 CACTATTA
1 CACTATTA
22115240 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:22117506 original size:45 final size:45
Alignment explanation
Indices: 22117442--22117532 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
22117432 AGTTGACAAT
* * *
22117442 CCCTATCCTTAAAGATTAGATTGGATCAGGTCAAACAATTAAACC
1 CCCTATCCTTAAAGATTAGACTGGATCAGATCAAACAAATAAACC
22117487 CCCTATCCTTAAAGATTAGACTGGATCAGATCAAACAAATAAACC
1 CCCTATCCTTAAAGATTAGACTGGATCAGATCAAACAAATAAACC
22117532 C
1 C
22117533 TCTAGATTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (45 bp):
CCCTATCCTTAAAGATTAGACTGGATCAGATCAAACAAATAAACC
Found at i:22118356 original size:51 final size:51
Alignment explanation
Indices: 22118301--22118408 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 51
22118291 TGATACAAAT
22118301 TGATAAAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCA
* * * *
22118352 TGATAATGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCA
22118403 TGATAA
1 TGATAA
22118409 GAATTTCATG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (51 bp):
TGATAAAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCA
Found at i:22118368 original size:25 final size:26
Alignment explanation
Indices: 22118301--22118408 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
22118291 TGATACAAAT
22118301 TGATAA-AGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
22118326 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
22118352 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
22118377 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
22118403 TGATAA
1 TGATAA
22118409 GAATTTCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
25 30 0.38
26 50 0.62
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:22124105 original size:26 final size:25
Alignment explanation
Indices: 22124068--22124199 Score: 205
Period size: 26 Copynumber: 5.2 Consensus size: 25
22124058 TGATACAAAT
22124068 TGATAA-AGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
22124093 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
22124118 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
22124142 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
*
22124168 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
22124194 TGATAA
1 TGATAA
22124200 GAATTTCATG
Statistics
Matches: 104, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
24 24 0.23
25 28 0.27
26 52 0.50
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:22124122 original size:50 final size:50
Alignment explanation
Indices: 22124068--22124199 Score: 203
Period size: 50 Copynumber: 2.6 Consensus size: 50
22124058 TGATACAAAT
22124068 TGATAAAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATG-TTCA
1 TGATAAAGGTTAGGTAAATGTT-CATGATAATAGGTTAGGTAAATGTTTCA
* *
22124118 TGATAATGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTTCA
*
22124168 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAA-AGGTTAGGTAAATG-TTCATGATAA
22124200 GAATTTCATG
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
49 22 0.29
50 31 0.41
51 13 0.17
52 10 0.13
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (50 bp):
TGATAAAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTTCA
Found at i:22128485 original size:21 final size:21
Alignment explanation
Indices: 22128459--22128499 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
22128449 TAACAGAACC
22128459 GCTGATGTGGCAAGTTAACTA
1 GCTGATGTGGCAAGTTAACTA
*
22128480 GCTGATGTGGCCAGTTAACT
1 GCTGATGTGGCAAGTTAACT
22128500 TGCCACGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (21 bp):
GCTGATGTGGCAAGTTAACTA
Found at i:22129793 original size:21 final size:21
Alignment explanation
Indices: 22129755--22129795 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
22129745 CAACGTGGCA
*
22129755 AGTTAACTGGCCACATCAGCT
1 AGTTAACTGGCCAAATCAGCT
* *
22129776 AGTTAACTTGTCAAATCAGC
1 AGTTAACTGGCCAAATCAGC
22129796 GGTTTTGTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (21 bp):
AGTTAACTGGCCAAATCAGCT
Found at i:22131913 original size:24 final size:24
Alignment explanation
Indices: 22131886--22131931 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
22131876 CTAAAATAAT
22131886 ATACAATAAAACAATTTGAAATGA
1 ATACAATAAAACAATTTGAAATGA
* * *
22131910 ATACTATAAATCAATTTTAAAT
1 ATACAATAAAACAATTTGAAAT
22131932 AAATGATACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (24 bp):
ATACAATAAAACAATTTGAAATGA
Found at i:22134792 original size:23 final size:21
Alignment explanation
Indices: 22134732--22134784 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
22134722 GACACATAAA
* *
22134732 GTGCCTAAAACGACACACGAG
1 GTGCCTGATACGACACACGAG
22134753 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
22134774 GTGCCTGATAC
1 GTGCCTGATAC
22134785 ACGACACATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.15
Consensus pattern (21 bp):
GTGCCTGATACGACACACGAG
Found at i:22134800 original size:23 final size:22
Alignment explanation
Indices: 22134722--22134805 Score: 82
Period size: 21 Copynumber: 3.9 Consensus size: 22
22134712 ATCAGTATGT
* *
22134722 GACACATAAAGTGCCT-AAAAC
1 GACACACAAAGTGCCTGATAAC
* *
22134743 GACACACGAGGTGCCTGAT-AC
1 GACACACAAAGTGCCTGATAAC
* *
22134764 GACACACGAGGTGCCTGATACAC
1 GACACACAAAGTGCCTGATA-AC
*
22134787 GACACATAAAGTGCCTGAT
1 GACACACAAAGTGCCTGAT
22134806 CGATAAAGCC
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
21 34 0.64
22 1 0.02
23 18 0.34
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (22 bp):
GACACACAAAGTGCCTGATAAC
Found at i:22135446 original size:8 final size:8
Alignment explanation
Indices: 22135433--22135457 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22135423 TTTATTATAG
22135433 AATAATAT
1 AATAATAT
22135441 AATAATAT
1 AATAATAT
22135449 AATAATAT
1 AATAATAT
22135457 A
1 A
22135458 CTAAACATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AATAATAT
Found at i:22136758 original size:33 final size:35
Alignment explanation
Indices: 22136664--22136759 Score: 87
Period size: 33 Copynumber: 2.8 Consensus size: 35
22136654 TAATATTTTG
*
22136664 ATATATGAAATATAAATTTTAAATATTT--TTAAGTA
1 ATATAT-AAAT-TATATTTTAAATATTTAATTAAGTA
* *
22136699 ATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-A
1 AT--ATATAAATTATATTTTAAATATTTAATTAAGTA
22136732 ATATATAAATTATATTTTAAATATTTAA
1 ATATATAAATTATATTTTAAATATTTAA
22136760 GTATAGCTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.26
34 8 0.16
35 6 0.12
36 3 0.06
37 4 0.08
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (35 bp):
ATATATAAATTATATTTTAAATATTTAATTAAGTA
Found at i:22136774 original size:33 final size:33
Alignment explanation
Indices: 22136679--22136774 Score: 85
Period size: 33 Copynumber: 2.9 Consensus size: 33
22136669 TGAAATATAA
*
22136679 ATTTTAAATATTTTTAAGTAATAAATATT-AATTAT
1 ATTTTAAATA--TTTAAGT-ATAGATATTAAATTAT
*
22136714 -TTATAAA-ATTTAA-T-TAGAATATATAAATTAT
1 ATTTTAAATATTTAAGTATAG-ATAT-TAAATTAT
*
22136745 ATTTTAAATATTTAAGTATAGCTATTAAAT
1 ATTTTAAATATTTAAGTATAGATATTAAAT
22136775 ATTTGTAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
28 2 0.04
29 4 0.08
30 2 0.04
31 11 0.22
32 6 0.12
33 12 0.24
34 10 0.20
35 3 0.06
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (33 bp):
ATTTTAAATATTTAAGTATAGATATTAAATTAT
Found at i:22140352 original size:45 final size:45
Alignment explanation
Indices: 22140224--22141231 Score: 461
Period size: 44 Copynumber: 21.8 Consensus size: 45
22140214 TTGTCGCTTT
* * * *
22140224 AATCTACTCTACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--T-A--C-TATCTTC
* * * * *
22140275 AATCTGTTTCACTGCAACTTCAGAGAAATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTC
* * *
22140320 AATCTGCTCCACTACAA-TATCAGGGAGATAAGATTTGTAACTTGTAGCTTT
1 AATCTGCTCCACTGCAACT-TCAGGGAGATAAGA-TT-T-AC---TATCTTC
* * *
22140371 AATCTGTTCCACTGCAACTTCAGAGGA-ATAATATTTATTATCTTC
1 AATCTGCTCCACTGCAACTTCAG-GGAGATAAGATTTACTATCTTC
* ** * * *
22140416 AATCTGTTCCACTGCAACTTCAGAAAAATAAGATTCACTATCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTC
* * *** * *
22140461 AATCTACTCCACTGTAACTTCAAAAAGATAAGAATTGTAACTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-ATT-T-AC---TATCTTC
* * * *
22140512 AATCTGTTCTACTGCAACTTCAGGGAAATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTC
* ** * ** *
22140557 AATATGCTTTATTGCAACTTCAGAAAGATAAGATTTACTATTTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTC
* **
22140602 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTC
* * * * *
22140647 AATCTGCTCCACCGCAACTTCAGGAAGATAACATTTGTAGCTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-TA-C---TATCTTC
* ** * ** *
22140698 AGTCTATTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TTA--CTATCTTC
* * * *
22140748 AATC--CAACCTACTGCAACTTCA-GAAGTATAAGACTTA-TCGT-TTC
1 AATCTGC-TCC-ACTGCAACTTCAGGGAG-ATAAGATTTACT-ATCTTC
* * * * * * * * * *
22140792 ATTCTGCTTCGCTGTAACTTTAGGGAGAAAAAATTTGTAATTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-T-A---CTATCTTC
* * * ** * * *
22140843 AATCTGTTCCGCTACAACTTTGGGGAAATAAGATTTGCTATTTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTC
* * * * *
22140888 AATCTGCTCAATTACAACTTCACGGAGATAAGATTT-GTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTC
* * * * *
22140932 AATCTACTCCACTGCAACTTCAGAGAGATCAGATTT-GTAAT-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACT-ATCTTC
* * * *
22140976 AATCTGCTCCACTGCAACTTCAGAGAGATCAGATTT-GTAAT-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACT-ATCTTC
** * * *
22141020 AATCTGCTCCACTGCAACTTCAAAGAGATCAGATTT-GTAAT-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACT-ATCTTC
* * * *
22141064 AATCTGCTCCACTGCAACTTCAGAGAGATTAGATTT-GTAAT-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACT-ATCTTC
* * * * *
22141108 AATCTGCTCTACTGCAACTTCAGAGAGATCAGATTT-GTAAT-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACT-ATCTTC
* * * *
22141152 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTT-GTAACTCC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTC
** * *
22141196 AATCTATTACACTGTAACTTCAGGGAGATAAGATTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
22141232 GTAACTTGTA
Statistics
Matches: 764, Mismatches: 151, Indels: 91
0.76 0.15 0.09
Matches are distributed among these distances:
43 1 0.00
44 298 0.39
45 244 0.32
46 10 0.01
47 6 0.01
48 5 0.01
49 9 0.01
50 34 0.04
51 147 0.19
52 8 0.01
53 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTC
Found at i:22140447 original size:96 final size:96
Alignment explanation
Indices: 22140224--22141194 Score: 416
Period size: 96 Copynumber: 10.4 Consensus size: 96
22140214 TTGTCGCTTT
* * *
22140224 AATCTACTCTACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTTCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTCCACTG
*
22140289 CAACTTCAGAGAAATAAGATTTGCTATCTTC
66 CAACTTCAGAGAAATAAGATTTACTATCTTC
* * *
22140320 AATCTGCTCCACTACAA-TATCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACT
1 AATCTGCTCCACTGCAACT-TCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTCCACT
* * *
22140384 GCAACTTCAGAGGAATAATATTTATTATCTTC
65 GCAACTTCAGAGAAATAAGATTTACTATCTTC
* ** * * * **
22140416 AATCTGTTCCACTGCAACTTCAGAAAAATAAGA-T--T--CAC-TATCTTTAATCTACTCCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTCCACTG
* * * *
22140475 TAACTTCA-AAAAGATAAGAATTGTAACTTGTAGCTTT
66 CAACTTCAGAGAA-ATAAG-ATT-T-AC---TATCTTC
* * * * * * * * *
22140512 AATCTGTTCTACTGCAACTTCAGGGAAATAAGATT--T---GC-TATCTTCAATATGCTT-TATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTG-TTCCACT
*
22140570 GCAACTTCAGA-AAGATAAGATTTACTATTTTC
65 GCAACTTCAGAGAA-ATAAGATTTACTATCTTC
* * * * * *
22140602 AATCTGCTCCACTACAACTTCAGGGAGATAAGATT--T--GT--TATCTTCAATCTGCTCCACCG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTCCACTG
* * *
22140661 CAACTTCAG-GAAGATAACATTTGTAGCTTGTAGCTTT
66 CAACTTCAGAGAA-ATAAGA-TT-TA-C---TATCTTC
* ** * * * ***
22140698 AGTCTATTCCACTGCAACTTCAGGGAGATAAGACTT-GTTA-TGGTAGATTTAATC-CAACCTAC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAGTAACTCGTAGCTTTAATCTGTTCC-AC
* * *
22140760 TGCAACTTCAGA-AGTATAAGACTTA-TCGT-TTC
64 TGCAACTTCAGAGA-AATAAGATTTACT-ATCTTC
* * * * * * * * * * * *
22140792 ATTCTGCTTCGCTGTAACTTTAGGGAGAAAAAATTTGTAATTTGTAGCTTTAATCTGTTCCGCTA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTCCACTG
** * * *
22140857 CAACTTTGGGGAAATAAGATTTGCTATTTTC
66 CAACTTCAGAGAAATAAGATTTACTATCTTC
* * * * * * **
22140888 AATCTGCTCAATTACAACTTCACGGAGATAAGA-T--T---T-GTATCTTCAATCTACTCCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTCCACTG
* * * *
22140946 CAACTTCAGAGAGATCAGATTT-GTAAT-TTT
66 CAACTTCAGAGAAATAAGATTTACT-ATCTTC
* * * *
22140976 AATCTGCTCCACTGCAACTTCAGAGAGATCAGATTTGTAA----T---TTTAATCTGCTCCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTCCACTG
* * * * *
22141034 CAACTTCAAAGAGATCAGATTT-GTAAT-TTT
66 CAACTTCAGAGAAATAAGATTTACT-ATCTTC
* * * * *
22141064 AATCTGCTCCACTGCAACTTCAGAGAGATTAGATTTGTAA----T---TTTAATCTGCTCTACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTCCACTG
* * * *
22141122 CAACTTCAGAGAGATCAGATTT-GTAAT-TTT
66 CAACTTCAGAGAAATAAGATTTACT-ATCTTC
* *
22141152 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTC
22141195 CAATCTATTA
Statistics
Matches: 696, Mismatches: 133, Indels: 97
0.75 0.14 0.10
Matches are distributed among these distances:
88 198 0.28
89 39 0.06
90 97 0.14
91 8 0.01
92 3 0.00
93 8 0.01
94 31 0.04
95 36 0.05
96 236 0.34
97 7 0.01
98 1 0.00
99 3 0.00
100 3 0.00
101 26 0.04
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (96 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAGCTTTAATCTGTTCCACTG
CAACTTCAGAGAAATAAGATTTACTATCTTC
Found at i:22140622 original size:186 final size:186
Alignment explanation
Indices: 22140383--22140730 Score: 455
Period size: 186 Copynumber: 1.9 Consensus size: 186
22140373 TCTGTTCCAC
* * * * *
22140383 TGCAACTTCAGAGGAATAATATTTATTATCTTCAATCTGTTCCACTGCAACTTCAGAAAAATAAG
1 TGCAACTTCAGAAGAATAAGATTTACTATCTTCAATCTGCTCCACTACAACTTCAGAAAAATAAG
* * * *
22140448 ATTCACTATCTTTAATCTACTCCACTGTAACTTCAAAAAGATAAGAATTGTAACTTGTAGCTTTA
66 ATTCACTATCTTCAATCTACTCCACCGCAACTTCAAAAAGATAACAATTGTAACTTGTAGCTTTA
* *
22140513 ATCTGTTCTACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAATATGCTTTAT
131 ATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAATATGCTTTAT
* ** *
22140569 TGCAACTTCAGAA-AGATAAGATTTACTATTTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
1 TGCAACTTCAGAAGA-ATAAGATTTACTATCTTCAATCTGCTCCACTACAACTTCAGAAAAATAA
*** * ** * *
22140633 GATTTGTTATCTTCAATCTGCTCCACCGCAACTTCAGGAAGATAACATTTGTAGCTTGTAGCTTT
65 GATTCACTATCTTCAATCTACTCCACCGCAACTTCAAAAAGATAACAATTGTAACTTGTAGCTTT
* *
22140698 AGTCTATTCCACTGCAACTTCAGGGAGATAAGA
130 AATCTATTCCACTGCAACTTCAGGGAAATAAGA
22140731 CTTGTTATGG
Statistics
Matches: 136, Mismatches: 25, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
185 1 0.01
186 135 0.99
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (186 bp):
TGCAACTTCAGAAGAATAAGATTTACTATCTTCAATCTGCTCCACTACAACTTCAGAAAAATAAG
ATTCACTATCTTCAATCTACTCCACCGCAACTTCAAAAAGATAACAATTGTAACTTGTAGCTTTA
ATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAATATGCTTTAT
Found at i:22141068 original size:132 final size:132
Alignment explanation
Indices: 22140207--22141235 Score: 538
Period size: 141 Copynumber: 7.4 Consensus size: 132
22140197 CTTTAGAGGT
** * * *
22140207 ATAAGATTTGTCGCTTT-AATCTACTCTACTGCAACTTCAGGGAGATAAGATTAGTAACTCGTAG
1 ATAAGATTTGT-AATTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAA----T--
* * * * * *
22140271 CTTTAATCTGTTTCACTGCAACTTCAGAGAAATAAGATTTGCT-ATCTTCAATCTGCTCCACTAC
59 -TTTAATCTGCTCCACTGCAACTTCAGAGAGATCAGATTTG-TAAT-TTTAATCTGCTCCACTGC
**
22140335 AA-TATCAGGGAG
121 AACT-TCAAAGAG
** * * *
22140347 ATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGAG-GAATAATATTTATTA
1 ATAAGATTTGTAA-TT-T--C---AATCTACTCCACTGCAACTTCAGAGAG-ATAAGATTTGTAA
* * * * * ** *
22140411 TCTTCAATCTGTTCCACTGCAACTTCAGAAAAATAAGATTCACT-ATCTTTAATCTACTCCACTG
58 T-TTTAATCTGCTCCACTGCAACTTCAGAGAGATCAGATT-TGTAAT-TTTAATCTGCTCCACTG
* *
22140475 TAACTTCAAAAAG
120 CAACTTCAAAGAG
* ** * * *
22140488 ATAAGAATTGTAACTTGTAGCTTTAATCTGTTCTACTGCAACTTCAGGGAAATAAGATTTGCT-A
1 ATAAGATTTGTAA-TT-T--C---AATCTACTCCACTGCAACTTCAGAGAGATAAGATTTG-TAA
* * ** * * * * *
22140552 TCTTCAATATGCTTTATTGCAACTTCAGAAAGATAAGATTTACT-ATTTTCAATCTGCTCCACTA
58 T-TTTAATCTGCTCCACTGCAACTTCAGAGAGATCAGATTT-GTAATTTT-AATCTGCTCCACTG
**
22140616 CAACTTCAGGGAG
120 CAACTTCAAAGAG
* * * *
22140629 ATAAGATTTGTTATCTTCAATCTGCTCCACCGCAACTTCAG-GAAGATAACATTTGTAGCTTGTA
1 ATAAGATTTGTAAT-TTCAATCTACTCCACTGCAACTTCAGAG-AGATAAGATTTGTA------A
* * ** * * *
22140693 GCTTTAGTCTATTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGA-TTTAATC--CAA
58 -TTTTAATCTGCTCCACTGCAACTTCAGAGAGATCAGA----TT-T-GTA-ATTTTAATCTGC-T
*
22140755 CCTACTGCAACTTCAGAAG-T
114 CC-ACTGCAACTTCA-AAGAG
* * ** * * * * * * * * *
22140775 ATAAGACTTATCGTTTCATTCTGCTTCGCTGTAACTTTAGGGAGAAAAAATTTGTAATTTGTAGC
1 ATAAGATTTGTAATTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAA----T---
* * * ** * * * * * *
22140840 TTTAATCTGTTCCGCTACAACTTTGGGGAAATAAGATTTGCT-ATTTTCAATCTGCTCAATTACA
59 TTTAATCTGCTCCACTGCAACTTCAGAGAGATCAGATTTG-TAATTTT-AATCTGCTCCACTGCA
**
22140904 ACTTCACGGAG
122 ACTTCAAAGAG
*
22140915 ATAAGATTTGT-ATCTTCAATCTACTCCACTGCAACTTCAGAGAGATCAGATTTGTAATTTTAAT
1 ATAAGATTTGTAAT-TTCAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAATTTTAAT
22140979 CTGCTCCACTGCAACTTCAGAGAGATCAGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAAA
65 CTGCTCCACTGCAACTTCAGAGAGATCAGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAAA
22141044 GAG
130 GAG
* * * *
22141047 ATCAGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATTAGATTTGTAATTTTAATC
1 ATAAGATTTGTAATTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAATTTTAATC
* *
22141112 TGCTCTACTGCAACTTCAGAGAGATCAGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAG
66 TGCTCCACTGCAACTTCAGAGAGATCAGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAAAG
22141177 AG
131 AG
* * * * * *
22141179 ATAAGATTTGTAACTCCAATCTATTACACTGTAACTTCAGGGAGATAAGATTTGTAA
1 ATAAGATTTGTAATTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAA
22141236 CTTGTAGTTT
Statistics
Matches: 703, Mismatches: 135, Indels: 110
0.74 0.14 0.12
Matches are distributed among these distances:
132 193 0.27
133 39 0.06
134 2 0.00
135 30 0.04
136 1 0.00
138 2 0.00
139 7 0.01
140 76 0.11
141 218 0.31
142 4 0.01
143 1 0.00
144 1 0.00
145 65 0.09
146 29 0.04
147 34 0.05
148 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (132 bp):
ATAAGATTTGTAATTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAATTTTAATC
TGCTCCACTGCAACTTCAGAGAGATCAGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAAAG
AG
Found at i:22141237 original size:44 final size:44
Alignment explanation
Indices: 22140873--22141235 Score: 498
Period size: 44 Copynumber: 8.2 Consensus size: 44
22140863 TGGGGAAATA
* * * *
22140873 AGATTTGCT-ATTTTCAATCTGCTCAATTACAACTTCACG-GAGATA
1 AGATTTG-TAATTTT-AATCTGCTCCACTGCAACTTCA-GAGAGATC
* *
22140918 AGATTTGT-ATCTTCAATCTACTCCACTGCAACTTCAGAGAGATC
1 AGATTTGTAAT-TTTAATCTGCTCCACTGCAACTTCAGAGAGATC
22140962 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATC
1 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATC
*
22141006 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAAAGAGATC
1 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATC
*
22141050 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATT
1 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATC
*
22141094 AGATTTGTAATTTTAATCTGCTCTACTGCAACTTCAGAGAGATC
1 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATC
*
22141138 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATA
1 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATC
* ** ** * * * *
22141182 AGATTTGTAACTCCAATCTATTACACTGTAACTTCAGGGAGATA
1 AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATC
22141226 AGATTTGTAA
1 AGATTTGTAA
22141236 CTTGTAGTTT
Statistics
Matches: 292, Mismatches: 23, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
43 1 0.00
44 280 0.96
45 11 0.04
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (44 bp):
AGATTTGTAATTTTAATCTGCTCCACTGCAACTTCAGAGAGATC
Found at i:22141366 original size:74 final size:74
Alignment explanation
Indices: 22141229--22141377 Score: 194
Period size: 74 Copynumber: 2.0 Consensus size: 74
22141219 GGAGATAAGA
* * * * *
22141229 TTTGTAACTTGTAGTTTTAATTTGTTCCACTATAACTTTAGGGAAATAATATTCGTATATTCAAT
1 TTTGTAACTTGTAGCTTTAATCTATTCCACTAGAACTTTAGGGAAATAAAATTCGTATATTCAAT
22141294 CTGCTCCAC
66 CTGCTCCAC
* * *
22141303 TTTGTAACTTGTAGCTTTAATCTATTCCACT-GCA-TTTCAGGGAAATAAAATTTGGTATCTTCA
1 TTTGTAACTTGTAGCTTTAATCTATTCCACTAGAACTTT-AGGGAAATAAAA-TTCGTATATTCA
22141366 ATCTGCTCCAC
64 ATCTGCTCCAC
22141377 T
1 T
22141378 ACAACTTCAG
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
72 3 0.05
73 12 0.18
74 50 0.77
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.42
Consensus pattern (74 bp):
TTTGTAACTTGTAGCTTTAATCTATTCCACTAGAACTTTAGGGAAATAAAATTCGTATATTCAAT
CTGCTCCAC
Found at i:22141484 original size:43 final size:43
Alignment explanation
Indices: 22141431--22141583 Score: 162
Period size: 43 Copynumber: 3.4 Consensus size: 43
22141421 ATTCCACTAT
*
22141431 AACTTTAGGGAAATAAAATTAATTCTTTAATTTGCTCCACTGC
1 AACTTTAGGGAAATAAAATTAATTCTTTAATCTGCTCCACTGC
* * ** *
22141474 AACTTTAGGGAGATAAGATTTATAACTTGTAGCTTTAATCTATTCCACTGT
1 AACTTTAGGGAAATAA-A-AT-TAA--T-T--CTTTAATCTGCTCCACTGC
22141525 AACTTTAGGGAAATAAAATTAATTCTTTAATCTGCTCCACTGC
1 AACTTTAGGGAAATAAAATTAATTCTTTAATCTGCTCCACTGC
* *
22141568 AACTTCAGGGAGATAA
1 AACTTTAGGGAAATAA
22141584 GATTTGCTAT
Statistics
Matches: 89, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
43 45 0.51
44 1 0.01
45 2 0.02
46 4 0.04
48 4 0.04
49 2 0.02
50 1 0.01
51 30 0.34
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (43 bp):
AACTTTAGGGAAATAAAATTAATTCTTTAATCTGCTCCACTGC
Found at i:22141494 original size:94 final size:93
Alignment explanation
Indices: 22141307--22141588 Score: 422
Period size: 94 Copynumber: 3.0 Consensus size: 93
22141297 CTCCACTTTG
** ** *
22141307 TAACTTGTAGCTTTAATCTATTCCACTGCA-TTTCAGGGAAATAAAATTTGGTATCTTCAATCTG
1 TAACTTGTAGCTTTAATCTATTCCACTTAACTTT-AGGGAAATAAAA-TTAAT-TCTTTAATCTG
* *
22141371 CTCCACTACAACTTCAGGAAGATAAGATTTA
63 CTCCACTGCAACTTCAGGGAGATAAGATTTA
* *
22141402 TAACTTGTAGCTTAAATCTATTCCACTATAACTTTAGGGAAATAAAATTAATTCTTTAATTTGCT
1 TAACTTGTAGCTTTAATCTATTCCACT-TAACTTTAGGGAAATAAAATTAATTCTTTAATCTGCT
*
22141467 CCACTGCAACTTTAGGGAGATAAGATTTA
65 CCACTGCAACTTCAGGGAGATAAGATTTA
22141496 TAACTTGTAGCTTTAATCTATTCCACTGTAACTTTAGGGAAATAAAATTAATTCTTTAATCTGCT
1 TAACTTGTAGCTTTAATCTATTCCACT-TAACTTTAGGGAAATAAAATTAATTCTTTAATCTGCT
22141561 CCACTGCAACTTCAGGGAGATAAGATTT
65 CCACTGCAACTTCAGGGAGATAAGATTT
22141589 GCTATCTTCA
Statistics
Matches: 171, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
94 126 0.74
95 29 0.17
96 13 0.08
97 3 0.02
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.36
Consensus pattern (93 bp):
TAACTTGTAGCTTTAATCTATTCCACTTAACTTTAGGGAAATAAAATTAATTCTTTAATCTGCTC
CACTGCAACTTCAGGGAGATAAGATTTA
Found at i:22144288 original size:9 final size:9
Alignment explanation
Indices: 22144274--22144319 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
22144264 TATAGTTTGA
22144274 TATTCGAAT
1 TATTCGAAT
22144283 TATTCGAAT
1 TATTCGAAT
22144292 TATTCGAAT
1 TATTCGAAT
* *
22144301 TATTTGAGT
1 TATTCGAAT
*
22144310 TATTCAAAT
1 TATTCGAAT
22144319 T
1 T
22144320 CGAAAACTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.48
Consensus pattern (9 bp):
TATTCGAAT
Found at i:22147887 original size:17 final size:17
Alignment explanation
Indices: 22147865--22147899 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
22147855 TTCGAAAATA
22147865 AAAAAATAAAAAATACT
1 AAAAAATAAAAAATACT
22147882 AAAAAATAAAAAATACT
1 AAAAAATAAAAAATACT
22147899 A
1 A
22147900 CCTTTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAAAATAAAAAATACT
Found at i:22150264 original size:3 final size:3
Alignment explanation
Indices: 22150258--22150318 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
22150248 TATTATCCAA
22150258 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
22150306 ATT ATT ATT ATT A
1 ATT ATT ATT ATT A
22150319 CCATTATATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:22150430 original size:22 final size:23
Alignment explanation
Indices: 22150404--22150458 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
22150394 ATTCCTTTTC
* *
22150404 TATTATTATTTATTATATTGT-A
1 TATTATTATTTATTAGATTATCA
22150426 TATTATTA-TTATTAGATTATCA
1 TATTATTATTTATTAGATTATCA
*
22150448 TGTTATTATTT
1 TATTATTATTT
22150459 CTTTCTCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.36
22 16 0.57
23 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (23 bp):
TATTATTATTTATTAGATTATCA
Found at i:22150454 original size:25 final size:25
Alignment explanation
Indices: 22150404--22150457 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
22150394 ATTCCTTTTC
*
22150404 TATTATTATTTATTATATTGTATAT
1 TATTATTATTGATTATATTGTATAT
22150429 TATTATTATTAGATTATCA-TGT-TAT
1 TATTATTATT-GATTAT-ATTGTATAT
22150454 TATT
1 TATT
22150458 TCTTTCTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 17 0.65
26 8 0.31
27 1 0.04
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (25 bp):
TATTATTATTGATTATATTGTATAT
Found at i:22150593 original size:3 final size:3
Alignment explanation
Indices: 22150585--22150682 Score: 103
Period size: 3 Copynumber: 32.7 Consensus size: 3
22150575 TTTTTACTAC
* *
22150585 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATCT AAT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
* * *
22150630 ATT ATT ATT ACCTT -TT ATT ATT ATT ACT ATT -GT ATT ATT ACT ATT
1 ATT ATT ATT A--TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
22150675 ATT ATT AT
1 ATT ATT AT
22150683 ATTTTCTTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
2 5 0.06
3 71 0.89
4 2 0.03
5 2 0.03
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:22150696 original size:26 final size:25
Alignment explanation
Indices: 22150645--22150734 Score: 67
Period size: 26 Copynumber: 3.5 Consensus size: 25
22150635 TATTACCTTT
* * *
22150645 TATTATTATTACTATTGTATTATTAC
1 TATTATTATTA-TATTTTTTTTTTAC
22150671 TATTATTATTATATTTTCTTTTTTACC
1 TATTATTATTATATTTT-TTTTTTA-C
* *
22150698 GTCACTA-TATTAT-TTTTATTTTTAC
1 -T-ATTATTATTATATTTTTTTTTTAC
*
22150723 TACTATTATTAT
1 TATTATTATTAT
22150735 TATCAATATT
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
23 4 0.07
24 7 0.13
25 6 0.11
26 22 0.41
27 5 0.09
28 7 0.13
29 3 0.06
ACGTcount: A:0.27, C:0.10, G:0.02, T:0.61
Consensus pattern (25 bp):
TATTATTATTATATTTTTTTTTTAC
Found at i:22158087 original size:2 final size:2
Alignment explanation
Indices: 22158080--22158110 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
22158070 TGTACGTGAA
22158080 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22158111 ATACTTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22160027 original size:44 final size:43
Alignment explanation
Indices: 22159977--22160061 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
22159967 GGGGACAAGA
*
22159977 TCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGG
1 TCTGTAAATTT-AGCCTATTACCCTACTGCTTAGGGAGTTAAGG
* * * *
22160021 TCTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAA
1 TCTGTAAATTTAGCCTATTACCCTACTGCTTAGGGAGTTAA
22160062 AGCTCATCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 26 0.72
44 10 0.28
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (43 bp):
TCTGTAAATTTAGCCTATTACCCTACTGCTTAGGGAGTTAAGG
Found at i:22160266 original size:220 final size:220
Alignment explanation
Indices: 22159765--22160565 Score: 1367
Period size: 219 Copynumber: 3.6 Consensus size: 220
22159755 AAGACATTTG
* * *
22159765 ATTTTCAACCTGTTACCCTACTGCTTAGGG-GTTTAAGGTCTGTAAATTTGGCTTGCTACCCTAC
1 ATTTTCAGCCTATTACCCTACTGCTTAGGGAG-TTAAGGTCTGTAAATTTGGCTTGTTACCCTAC
* *
22159829 TGCTTAAGGGGTT-AAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG
65 TGCTTAGGGGGTTAAAGCTCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG
* *
22159893 TAAATTCAGCCTACTTCACTGCAACTTCAGGAAGACAAGATTCGCTGGATTCGAT-TGTTCCACT
130 TAAATTCAGCCTGCTTTACTGCAACTTCAGGAAGACAAGATTCGCTGGATTCGATCTGTTCCACT
22159957 GCAACTTCAGGGGGACAAGATCTGTA
195 GCAACTTCAGGGGGACAAGATCTGTA
22159983 ATTTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACT
1 ATTTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACT
*
22160048 GCTTAGGGGGTTAAAGCTCATCATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT
66 GCTTAGGGGGTTAAAGCTCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT
* *
22160113 AAATTCAGCCTGCTTTACTGCAACTTCAAGAAGACAAGATTCGCTGGATTCGATCTGCTCCACTG
131 AAATTCAGCCTGCTTTACTGCAACTTCAGGAAGACAAGATTCGCTGGATTCGATCTGTTCCACTG
*
22160178 CAACTTCAGGGGGACAAGATCTATA
196 CAACTTCAGGGGGACAAGATCTGTA
*
22160203 ATTTTTAGCCTATTACCCTACTGCTTAGGGAGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACT
1 ATTTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACT
22160268 GCTTA-GGGGTTAAAGCTCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT
66 GCTTAGGGGGTTAAAGCTCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT
* *
22160332 AAATTCAGCTTGCTTTACTGCAACTTCAGGAAGACAAGATTCGCTGGATTCGATCTATTCCACTG
131 AAATTCAGCCTGCTTTACTGCAACTTCAGGAAGACAAGATTCGCTGGATTCGATCTGTTCCACTG
22160397 CAACTTCAGGGGGACAAGATCTGTA
196 CAACTTCAGGGGGACAAGATCTGTA
*
22160422 ATTTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGGTCTGTAAATTTGGCTTGTTAACCTACT
1 ATTTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACT
* * * * *
22160487 GATTAGGGGGTTAAAGCTCATCATCTTCGATCTATTTCCCTACTGCTTAGGGTGATAAGATCCGT
66 GCTTAGGGGGTTAAAGCTCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT
22160552 AAATCTTCAGCCTG
131 AAA--TTCAGCCTG
22160566 TTACCCTACT
Statistics
Matches: 551, Mismatches: 26, Indels: 8
0.94 0.04 0.01
Matches are distributed among these distances:
218 71 0.13
219 312 0.57
220 160 0.29
222 8 0.01
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (220 bp):
ATTTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACT
GCTTAGGGGGTTAAAGCTCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT
AAATTCAGCCTGCTTTACTGCAACTTCAGGAAGACAAGATTCGCTGGATTCGATCTGTTCCACTG
CAACTTCAGGGGGACAAGATCTGTA
Found at i:22160470 original size:45 final size:45
Alignment explanation
Indices: 22160416--22160595 Score: 138
Period size: 45 Copynumber: 4.1 Consensus size: 45
22160406 GGGGACAAGA
*
22160416 TCTGT-AATTTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGG
1 TCTGTAAATCTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGG
* * * * * * *
22160460 TCTGTAAAT-TT-GGCTTGTTAACCTACTGATTAGGGGGTTAAAG
1 TCTGTAAATCTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGG
* * * * * * *
22160503 -CT-CATCATCTTC-GATCTATTTCCCTACTGCTTAGGGTGATAAGA
1 TCTGTA-AATCTTCAG-CCTATTACCCTACTGCTTAGGGAGTTAAGG
* * *
22160547 TCCGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGATTTAAGG
1 TCTGTAAATCTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGG
22160592 TCTG
1 TCTG
22160596 GTGAATTTAT
Statistics
Matches: 98, Mismatches: 30, Indels: 15
0.69 0.21 0.10
Matches are distributed among these distances:
41 1 0.01
42 4 0.04
43 28 0.29
44 27 0.28
45 36 0.37
46 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (45 bp):
TCTGTAAATCTTCAGCCTATTACCCTACTGCTTAGGGAGTTAAGG
Found at i:22172959 original size:2 final size:2
Alignment explanation
Indices: 22172952--22172978 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22172942 TGTACGTGAA
22172952 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
22172979 ATACTTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22173781 original size:1 final size:1
Alignment explanation
Indices: 22173775--22173800 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
22173765 GGTGTGTTTG
22173775 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
22173801 GCTTATGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:22181453 original size:33 final size:33
Alignment explanation
Indices: 22181415--22181513 Score: 153
Period size: 33 Copynumber: 3.0 Consensus size: 33
22181405 GATTGAGTAG
*
22181415 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
* *
22181448 GAGTGTTTTGCTGCTGTACAGGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
* *
22181481 GGGTGTTTTGTTGCTGGACAGGTGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
22181514 CAAGAAGAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.16, C:0.10, G:0.40, T:0.33
Consensus pattern (33 bp):
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Found at i:22195713 original size:35 final size:36
Alignment explanation
Indices: 22195664--22195731 Score: 88
Period size: 35 Copynumber: 1.9 Consensus size: 36
22195654 AATAATGTTA
*
22195664 AAATTAATTTTTATA-ATTAATAAAAA-ATAATATGTG
1 AAATTAATTATTATATA-T-ATAAAAAGATAATATGTG
22195700 AAATTAA-TATTATATATATAAAAAGATAATAT
1 AAATTAATTATTATATATATAAAAAGATAATAT
22195732 AAACATATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 7 0.24
35 14 0.48
36 8 0.28
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (36 bp):
AAATTAATTATTATATATATAAAAAGATAATATGTG
Done.