Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 87 of 345
Found at i:23766891 original size:3 final size:3
Alignment explanation
Indices: 23766883--23766917 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
23766873 TTCTTTCCTT
23766883 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23766918 GCATTTTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:23772105 original size:68 final size:67
Alignment explanation
Indices: 23771996--23772128 Score: 239
Period size: 68 Copynumber: 2.0 Consensus size: 67
23771986 GATAGGAAAA
* *
23771996 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCATCAGGTTTTGTAGTTGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGG-AGG
23772061 GCT
65 GCT
23772064 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGAGGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGAGGG
23772129 TTGATAGAGT
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
67 4 0.06
68 59 0.94
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.29
Consensus pattern (67 bp):
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGAGGG
CT
Found at i:23776565 original size:31 final size:31
Alignment explanation
Indices: 23776522--23776610 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 31
23776512 GAATAAATCT
* * *
23776522 TAAAGTTATACATAAATTTTGGTTTAATGTG
1 TAAATTTATACATAAATTTTGATTTAATGTA
* *
23776553 TAATTTTATACATAAACTTTGATTT--TGTA
1 TAAATTTATACATAAATTTTGATTTAATGTA
*
23776582 TAAATTTATACACAAAATTTTGATTTAAT
1 TAAATTTATACA-TAAATTTTGATTTAAT
23776611 CTAAATTTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
29 14 0.30
30 11 0.23
31 21 0.45
32 1 0.02
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (31 bp):
TAAATTTATACATAAATTTTGATTTAATGTA
Found at i:23777281 original size:13 final size:13
Alignment explanation
Indices: 23777263--23777288 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23777253 AGTTTTTTTT
23777263 TTTTTAAAAAATA
1 TTTTTAAAAAATA
23777276 TTTTTAAAAAATA
1 TTTTTAAAAAATA
23777289 ATACTAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTTTAAAAAATA
Found at i:23780155 original size:21 final size:21
Alignment explanation
Indices: 23780129--23780321 Score: 196
Period size: 21 Copynumber: 9.3 Consensus size: 21
23780119 ATGTTTTACT
***
23780129 TTCTGTTTAGCTCTTGTAAGC
1 TTCTGTTTAGCTCTTACGAGC
* *
23780150 TTCTGTTAAGCTCTTATGAGC
1 TTCTGTTTAGCTCTTACGAGC
*
23780171 TTCTG-TTAGCCCTTACGAGC
1 TTCTGTTTAGCTCTTACGAGC
*
23780191 TTCTGTTCAGCTCTTACGAGC
1 TTCTGTTTAGCTCTTACGAGC
* **
23780212 TTCTGTTAAGCTCTTTTGAGC
1 TTCTGTTTAGCTCTTACGAGC
*
23780233 TTTTGTTTAGCTCTTACGAGC
1 TTCTGTTTAGCTCTTACGAGC
* ** * *
23780254 TTCCT-TTCAAATCTTATGAGT
1 TT-CTGTTTAGCTCTTACGAGC
*
23780275 TTCTGTTTAGCTCTTACAAGC
1 TTCTGTTTAGCTCTTACGAGC
23780296 TTCTGTTTAGCT-TT-CGAGC
1 TTCTGTTTAGCTCTTACGAGC
23780315 TTCTGTT
1 TTCTGTT
23780322 GGCTCATTTA
Statistics
Matches: 141, Mismatches: 28, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
19 11 0.08
20 21 0.15
21 108 0.77
22 1 0.01
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCTGTTTAGCTCTTACGAGC
Found at i:23780279 original size:63 final size:64
Alignment explanation
Indices: 23780147--23780321 Score: 218
Period size: 63 Copynumber: 2.8 Consensus size: 64
23780137 AGCTCTTGTA
* **
23780147 AGCTTCTGTTAAGCTCTTATGAGCTTCTG-TTAGCCCTTACGAGCTT-CTGTTCAGCTCTTACG
1 AGCTTCTGTTAAGCTCTTATGAGCTTCTGTTTAGCTCTTACGAGCTTCCTGTTCAAATCTTACG
* * *
23780209 AGCTTCTGTTAAGCTCTTTTGAGCTTTTGTTTAGCTCTTACGAGCTTCCT-TTCAAATCTTATG
1 AGCTTCTGTTAAGCTCTTATGAGCTTCTGTTTAGCTCTTACGAGCTTCCTGTTCAAATCTTACG
* * **
23780272 AGTTTCTGTTTAGCTCTTACAAGCTTCTGTTTAGCT-TT-CGAGCTT-CTGTT
1 AGCTTCTGTTAAGCTCTTATGAGCTTCTGTTTAGCTCTTACGAGCTTCCTGTT
23780322 GGCTCATTTA
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
60 2 0.02
61 9 0.09
62 29 0.30
63 56 0.57
64 2 0.02
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (64 bp):
AGCTTCTGTTAAGCTCTTATGAGCTTCTGTTTAGCTCTTACGAGCTTCCTGTTCAAATCTTACG
Found at i:23785812 original size:47 final size:47
Alignment explanation
Indices: 23785703--23785813 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
23785693 CCGGGATAAG
*
23785703 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
23785750 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
23785797 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
23785814 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:23791768 original size:15 final size:15
Alignment explanation
Indices: 23791743--23791800 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
23791733 TCATGTATAT
23791743 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
23791759 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
23791774 AATAATTTCAATCAA
1 TATAAATTCAATCAA
23791789 TATAAATTCAAT
1 TATAAATTCAAT
23791801 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:23797075 original size:21 final size:21
Alignment explanation
Indices: 23797051--23797202 Score: 164
Period size: 21 Copynumber: 7.3 Consensus size: 21
23797041 ATGTTTTGCT
* *
23797051 TTCTGTTTAGCTCTTACAAGC
1 TTCTGTTCAGCTCTTACGAGC
*
23797072 TTCTGTTCAGCTCTTTCGAGC
1 TTCTGTTCAGCTCTTACGAGC
* *
23797093 TTCTGTTAAGCTCTTAAGAGC
1 TTCTGTTCAGCTCTTACGAGC
* * * *
23797114 TTTTGTTTAGCTTTTTCGAGC
1 TTCTGTTCAGCTCTTACGAGC
* *
23797135 TTCTGTTCAGCTCTTATGTGC
1 TTCTGTTCAGCTCTTACGAGC
* * *
23797156 TTCTGTTAAACTCTTATGAGC
1 TTCTGTTCAGCTCTTACGAGC
23797177 TTCTGTTCAGCT-TT-CGAGC
1 TTCTGTTCAGCTCTTACGAGC
23797196 TTCTGTT
1 TTCTGTT
23797203 GGCTCATTTG
Statistics
Matches: 108, Mismatches: 23, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
19 11 0.10
20 2 0.02
21 95 0.88
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTACGAGC
Found at i:23797158 original size:63 final size:62
Alignment explanation
Indices: 23797048--23797202 Score: 197
Period size: 63 Copynumber: 2.5 Consensus size: 62
23797038 CTCATGTTTT
* * *
23797048 GCTTTCTGTTTAGCTCTTACAAGCTTCTGTTCAGCTCTTTCGAGCTTCTGTTAAGCTCTTAAGA
1 GCTTT-TGTTTAGCT-TTTCGAGCTTCTGTTCAGCTCTTTCGAGCTTCTGTTAAACTCTTAAGA
* *
23797112 GCTTTTGTTTAGCTTTTTCGAGCTTCTGTTCAGCTCTTAT-GTGCTTCTGTTAAACTCTTATGA
1 GCTTTTGTTTAGC-TTTTCGAGCTTCTGTTCAGCTCTT-TCGAGCTTCTGTTAAACTCTTAAGA
* *
23797175 GCTTCTGTTCAGC-TTTCGAGCTTCTGTT
1 GCTTTTGTTTAGCTTTTCGAGCTTCTGTT
23797203 GGCTCATTTG
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
61 15 0.18
63 60 0.73
64 7 0.09
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (62 bp):
GCTTTTGTTTAGCTTTTCGAGCTTCTGTTCAGCTCTTTCGAGCTTCTGTTAAACTCTTAAGA
Found at i:23808733 original size:19 final size:19
Alignment explanation
Indices: 23808709--23808745 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
23808699 TTTTAAAGTT
23808709 ATTTAGGTAGATAAATCTC
1 ATTTAGGTAGATAAATCTC
23808728 ATTTAGGTAGATAAATCT
1 ATTTAGGTAGATAAATCT
23808746 TAAAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (19 bp):
ATTTAGGTAGATAAATCTC
Found at i:23808829 original size:42 final size:42
Alignment explanation
Indices: 23808783--23808866 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
23808773 GAATATTTAT
*
23808783 TTTATCTTTTAGTAGTTTATTA-AAATAAGGGAATTATTTTCC
1 TTTATCTTTTAGTAGTTTATTAGAAA-AAGGAAATTATTTTCC
23808825 TTTATCTTTTAGTAGTTTATTAGAAAAAGGAAATTATTTTCC
1 TTTATCTTTTAGTAGTTTATTAGAAAAAGGAAATTATTTTCC
23808867 CAATTATGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 37 0.93
43 3 0.08
ACGTcount: A:0.32, C:0.07, G:0.12, T:0.49
Consensus pattern (42 bp):
TTTATCTTTTAGTAGTTTATTAGAAAAAGGAAATTATTTTCC
Found at i:23817280 original size:30 final size:30
Alignment explanation
Indices: 23817246--23817307 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
23817236 CTTAACAAGT
23817246 AAATGCCTCTAAAATAATAA-AAAATTTAAC
1 AAATGCCTCTAAAATAATAACAAAA-TTAAC
*
23817276 AAATGCCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
23817306 AA
1 AA
23817308 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAC
Found at i:23817360 original size:14 final size:14
Alignment explanation
Indices: 23817341--23817367 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23817331 CAAACAATAA
23817341 CAACATAATAGTAG
1 CAACATAATAGTAG
23817355 CAACATAATAGTA
1 CAACATAATAGTA
23817368 AAATGGCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.11, T:0.22
Consensus pattern (14 bp):
CAACATAATAGTAG
Found at i:23820375 original size:57 final size:57
Alignment explanation
Indices: 23820259--23820373 Score: 153
Period size: 57 Copynumber: 2.0 Consensus size: 57
23820249 ATTTTTTAGG
* * *
23820259 TCATTTTCCTTTTGGATAAAACAATATTCATTTCCAAATGATTTTATTTCTCCATTT
1 TCATTTTCATTTTGGAGAAAACAATAATCATTTCCAAATGATTTTATTTCTCCATTT
*
23820316 TCATTTTCATTTTGGAGAAAATC-TTAATCATTTCCAAATG-TTTCATATTTCTCCATTT
1 TCATTTTCATTTTGGAGAAAA-CAATAATCATTTCCAAATGATTT--TATTTCTCCATTT
23820374 CAGCATTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
56 3 0.06
57 34 0.67
58 14 0.27
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.49
Consensus pattern (57 bp):
TCATTTTCATTTTGGAGAAAACAATAATCATTTCCAAATGATTTTATTTCTCCATTT
Found at i:23821882 original size:53 final size:53
Alignment explanation
Indices: 23821801--23821951 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
23821791 CTTACACGGT
* *
23821801 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
23821856 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
23821909 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
23821952 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:23847193 original size:13 final size:14
Alignment explanation
Indices: 23847175--23847207 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
23847165 AATAAGAAAA
23847175 ATAATTTA-ATATG
1 ATAATTTAGATATG
*
23847188 ATAATTTAGATTTG
1 ATAATTTAGATATG
23847202 ATAATT
1 ATAATT
23847208 ACTTATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (14 bp):
ATAATTTAGATATG
Found at i:23848081 original size:22 final size:23
Alignment explanation
Indices: 23848044--23848087 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
23848034 TTTATTGTCT
23848044 TTAGGGTTTTAGGGTTAATTAAA
1 TTAGGGTTTTAGGGTTAATTAAA
*
23848067 TTAGGG-TTTATGGTTAATTAA
1 TTAGGGTTTTAGGGTTAATTAA
23848088 TTAAATTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (23 bp):
TTAGGGTTTTAGGGTTAATTAAA
Found at i:23848400 original size:126 final size:126
Alignment explanation
Indices: 23848165--23848475 Score: 487
Period size: 126 Copynumber: 2.5 Consensus size: 126
23848155 AATTAGAATA
* * * * * *
23848165 CACTATCAGTAAAATTACTAAAAAAAGCTTCCACGTGGATACTCTTTTGCTACGGTAGTATCTGA
1 CACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGA
* * * *
23848230 AAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGTTTCAAGCAGCATG
66 AAAAATAATTTTGAGAACACGTTCCTGAACAAATAATGTCCAAAACGCTTCAAGCAGCATG
*
23848291 CACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGA
1 CACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGA
*
23848356 AAAAATAATTTTGAGAACACGTTCCTGAACAAATAATGTCCAAAACGCTTCAAGCAGGATG
66 AAAAATAATTTTGAGAACACGTTCCTGAACAAATAATGTCCAAAACGCTTCAAGCAGCATG
* * *
23848417 TATTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTCTTTTGCTACAGTAGT
1 CACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGT
23848476 TCCTATTTGG
Statistics
Matches: 169, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 169 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (126 bp):
CACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGA
AAAAATAATTTTGAGAACACGTTCCTGAACAAATAATGTCCAAAACGCTTCAAGCAGCATG
Found at i:23851765 original size:21 final size:20
Alignment explanation
Indices: 23851736--23851774 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
23851726 AGCTTTTGGT
*
23851736 GGGGTTGTGGTTGCTCCGGC
1 GGGGTTGTGGTTCCTCCGGC
23851756 GGGGATTGTGGTTCCTCCG
1 GGGG-TTGTGGTTCCTCCG
23851775 ATAAGGGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.03, C:0.21, G:0.46, T:0.31
Consensus pattern (20 bp):
GGGGTTGTGGTTCCTCCGGC
Found at i:23852032 original size:18 final size:18
Alignment explanation
Indices: 23852006--23852047 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
23851996 GAATAGGAAA
* *
23852006 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGCTT
23852024 AGGATACATATAAGGCTT
1 AGGATACATATAAGGCTT
23852042 AGGATA
1 AGGATA
23852048 TGCACCTGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.26, T:0.24
Consensus pattern (18 bp):
AGGATACATATAAGGCTT
Found at i:23852651 original size:7 final size:7
Alignment explanation
Indices: 23852641--23852666 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23852631 TTATATACAT
23852641 AATACTA
1 AATACTA
23852648 AATACTA
1 AATACTA
23852655 AATACTA
1 AATACTA
23852662 AATAC
1 AATAC
23852667 GAAACAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:23855777 original size:21 final size:21
Alignment explanation
Indices: 23855750--23855800 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
23855740 CCTCCTCTTT
*
23855750 ATTTTTTGTTTCAATTTAGCC
1 ATTTTTTGTTCCAATTTAGCC
*
23855771 GTTTTTTGTTCCAATTTAGCC
1 ATTTTTTGTTCCAATTTAGCC
23855792 ATTTTTTGT
1 ATTTTTTGT
23855801 AAGAGTTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.16, C:0.14, G:0.12, T:0.59
Consensus pattern (21 bp):
ATTTTTTGTTCCAATTTAGCC
Found at i:23859393 original size:23 final size:23
Alignment explanation
Indices: 23859367--23859423 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
23859357 TGTGCTTCTG
*
23859367 TCACTTGCACTAAAGTGCCACTA
1 TCACTTGCACCAAAGTGCCACTA
**
23859390 TCACTTGCACCGTAGTGCCACTA
1 TCACTTGCACCAAAGTGCCACTA
*
23859413 ACACTTGCACC
1 TCACTTGCACC
23859424 CATAAAATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.26, C:0.35, G:0.14, T:0.25
Consensus pattern (23 bp):
TCACTTGCACCAAAGTGCCACTA
Found at i:23865057 original size:116 final size:116
Alignment explanation
Indices: 23864853--23865086 Score: 450
Period size: 116 Copynumber: 2.0 Consensus size: 116
23864843 TCTATAATTC
*
23864853 TTTAAGGTAATGACCTTTCACATCAGGACCAACATCCAACAACTTTTTCTTGCTCAAGCAAACTG
1 TTTAAGGTAATGACCTTTCACATCAGGACCAACATCCAACAACTTTTTCTTGCTCAAACAAACTG
23864918 CAATTTCAGTGTAATTACTGCCCAAATGTTAATTACATTATGGTAACTGCT
66 CAATTTCAGTGTAATTACTGCCCAAATGTTAATTACATTATGGTAACTGCT
*
23864969 TTTAAGGTAATGACCTTTCACATCAGGACCAACATCCAACAACTTTTTCTTGCTCAAACATACTG
1 TTTAAGGTAATGACCTTTCACATCAGGACCAACATCCAACAACTTTTTCTTGCTCAAACAAACTG
23865034 CAATTTCAGTGTAATTACTGCCCAAATGTTAATTACATTATGGTAACTGCT
66 CAATTTCAGTGTAATTACTGCCCAAATGTTAATTACATTATGGTAACTGCT
23865085 TT
1 TT
23865087 CAAGAATATT
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 116 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (116 bp):
TTTAAGGTAATGACCTTTCACATCAGGACCAACATCCAACAACTTTTTCTTGCTCAAACAAACTG
CAATTTCAGTGTAATTACTGCCCAAATGTTAATTACATTATGGTAACTGCT
Found at i:23878717 original size:35 final size:34
Alignment explanation
Indices: 23878650--23878730 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
23878640 ACTTGCCTCT
*
23878650 TCCCACTCTCCCATGCTGTCGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCGCCACCAACACCAC
*
23878684 TCCCATTCTCCCATGCTGTCTGCCACCAACACCA-
1 TCCCACTCTCCCATGCTGTC-GCCACCAACACCAC
* *
23878718 TCACACACTCCCA
1 TCCCACTCTCCCA
23878731 CCGCACCTGC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
34 29 0.71
35 12 0.29
ACGTcount: A:0.21, C:0.51, G:0.09, T:0.20
Consensus pattern (34 bp):
TCCCACTCTCCCATGCTGTCGCCACCAACACCAC
Found at i:23879112 original size:11 final size:11
Alignment explanation
Indices: 23879097--23879127 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
23879087 TTAAAACATA
23879097 AAAAAAATATAC
1 AAAAAAA-ATAC
23879109 AAAAAAAATAC
1 AAAAAAAATAC
23879120 AAAAAAAA
1 AAAAAAAA
23879128 AATTTACCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.84, C:0.06, G:0.00, T:0.10
Consensus pattern (11 bp):
AAAAAAAATAC
Found at i:23879114 original size:13 final size:13
Alignment explanation
Indices: 23879096--23879130 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
23879086 ATTAAAACAT
* *
23879096 AAAAAAAATATAC
1 AAAAAAAATACAA
23879109 AAAAAAAATACAA
1 AAAAAAAATACAA
23879122 AAAAAAAAT
1 AAAAAAAAT
23879131 TTACCTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (13 bp):
AAAAAAAATACAA
Found at i:23879727 original size:3 final size:3
Alignment explanation
Indices: 23879719--23879768 Score: 82
Period size: 3 Copynumber: 16.3 Consensus size: 3
23879709 TGCATTTCAA
*
23879719 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT
23879765 TAT T
1 TAT T
23879769 GAAATACATT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:23879874 original size:3 final size:3
Alignment explanation
Indices: 23879866--23879928 Score: 105
Period size: 3 Copynumber: 22.0 Consensus size: 3
23879856 TGTGTTTCAA
23879866 TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TA- TAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23879911 TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT
23879929 ATATATCCTT
Statistics
Matches: 57, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
2 6 0.11
3 51 0.89
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:23880282 original size:26 final size:23
Alignment explanation
Indices: 23880225--23880282 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
23880215 TAGTCAATTT
*
23880225 TTTTAATATATATTATATGAATA
1 TTTTAATATATAATATATGAATA
* *
23880248 ATTTCATATATAATATTATGTATATA
1 TTTTAATATATAATA-TATG-A-ATA
23880274 TTTTAATAT
1 TTTTAATAT
23880283 TATCAGTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
23 12 0.44
24 4 0.15
25 1 0.04
26 10 0.37
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (23 bp):
TTTTAATATATAATATATGAATA
Found at i:23880294 original size:127 final size:123
Alignment explanation
Indices: 23880063--23880315 Score: 436
Period size: 129 Copynumber: 2.0 Consensus size: 123
23880053 TGCCGCTTAC
23880063 CCCCGTATATATTTTTAGTACATATTAATAGTCAATTTTTTAATAATATTATATGAATAATTCAT
1 CCCCGTATATATTTTTAGTACATATTAATAGTCAATTTTTTAATAATATTATATGAATAATTCAT
23880128 ATATAATATTATGTATATATTAATATTATCAGTTATATATACTATATGA-TTCTAATA
66 ATATAATATTATGTATATATTAATATTATCAGTTATATATACTATATGATTTCTAATA
23880185 CCCCGTATATATTTTTTAGTACATATTAAATAGTCAATTTTTTTAATATATATTATATGAATAAT
1 CCCCGTATATA-TTTTTAGTACATATT-AATAGTCAA-TTTTTTAATA-ATATTATATGAATAA-
23880250 TTCATATATAATATTATGTATATATTTTAATATTATCAGTTATATATACTATATGATTTCTAATA
61 TTCATATATAATATTATGTATATA--TTAATATTATCAGTTATATATACTATATGATTTCTAATA
23880315 C
1 C
23880316 TATTATTTAT
Statistics
Matches: 123, Mismatches: 0, Indels: 8
0.94 0.00 0.06
Matches are distributed among these distances:
122 11 0.09
123 15 0.12
124 9 0.07
125 10 0.08
126 15 0.12
127 24 0.20
129 30 0.24
130 9 0.07
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48
Consensus pattern (123 bp):
CCCCGTATATATTTTTAGTACATATTAATAGTCAATTTTTTAATAATATTATATGAATAATTCAT
ATATAATATTATGTATATATTAATATTATCAGTTATATATACTATATGATTTCTAATA
Found at i:23880326 original size:33 final size:30
Alignment explanation
Indices: 23880268--23880337 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
23880258 TAATATTATG
*
23880268 TATATATTTTAATATTATCAGTTATATATA
1 TATATATTTTAATACTATCAGTTATATATA
* *
23880298 CTATATGATTTCTAATACTATTATTTATATATA
1 -TATAT-ATTT-TAATACTATCAGTTATATATA
23880331 TATATAT
1 TATATAT
23880338 ACTTTTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (30 bp):
TATATATTTTAATACTATCAGTTATATATA
Found at i:23886408 original size:47 final size:47
Alignment explanation
Indices: 23886354--23886642 Score: 364
Period size: 47 Copynumber: 6.1 Consensus size: 47
23886344 TTAGGATTTT
** ** *
23886354 ATGTGATGAATGTGAATGTATATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * * *
23886401 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGACGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GAGATAAGGCCGAATGGCCA
* * *
23886452 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * *
23886499 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
23886546 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * *
23886593 ATGTGATGAATGTGAACGTGTATATATGTAG-TAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATG-AGATAAGGCCGAATGGCCA
23886640 ATG
1 ATG
23886643 CGAAATTTGT
Statistics
Matches: 220, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
47 171 0.78
48 2 0.01
49 11 0.05
51 36 0.16
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
Found at i:23886479 original size:23 final size:23
Alignment explanation
Indices: 23886452--23886526 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
23886442 CGAATGGCCA
23886452 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
23886475 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
23886499 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
23886522 ATGTG
1 ATGTG
23886527 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:23887003 original size:37 final size:37
Alignment explanation
Indices: 23886873--23887002 Score: 224
Period size: 37 Copynumber: 3.5 Consensus size: 37
23886863 TAAAGACCAA
23886873 ATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCG
1 ATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCG
23886910 ATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCG
1 ATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCG
* *
23886947 ATGACTACGTGTGGAGATTTTGTCTGGGTAAGACCCG
1 ATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCG
* *
23886984 ATAACTTCGTGTGGAGATT
1 ATGACTACGTGTGGAGATT
23887003 TCATCTGAGT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 89 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.28
Consensus pattern (37 bp):
ATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCG
Found at i:23891166 original size:26 final size:26
Alignment explanation
Indices: 23891129--23891212 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
23891119 TGATACAAAT
* *
23891129 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23891155 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23891181 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23891207 TGATAA
1 TGATAA
23891213 GAATTCCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:23892923 original size:27 final size:27
Alignment explanation
Indices: 23892821--23892933 Score: 115
Period size: 27 Copynumber: 4.2 Consensus size: 27
23892811 GAGGAAGCGT
* * *
23892821 TCTGGTGGCTATGCCACAAATATCTG-A
1 TCTGGTGGCTCTGTCAC-ATTATCTGTA
23892848 TCTGGTGGCTCTGTCACATATATCTGT-
1 TCTGGTGGCTCTGTCACAT-TATCTGTA
*
23892875 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGTCAC-ATTATCTGTA
* * *
23892903 TTTGGTGACTCTGTCACATTATTTGT-
1 TCTGGTGGCTCTGTCACATTATCTGTA
23892929 TCTGG
1 TCTGG
23892934 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.07
27 52 0.71
28 16 0.22
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.39
Consensus pattern (27 bp):
TCTGGTGGCTCTGTCACATTATCTGTA
Found at i:23892930 original size:54 final size:54
Alignment explanation
Indices: 23892819--23892933 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
23892809 TGGAGGAAGC
*
23892819 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGTCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGTCACATATATCT
* * * * *
23892873 GTTCTGGTGGCTCTGCCACGATTATCTGTATTTGGTGACTCTGTCACAT-TATTT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGTCACATATATCT
23892927 GTTCTGG
1 GTTCTGG
23892934 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.39
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGTCACATATATCT
Found at i:23895812 original size:56 final size:56
Alignment explanation
Indices: 23895723--23895942 Score: 296
Period size: 56 Copynumber: 3.9 Consensus size: 56
23895713 GCTTTAACGG
* *
23895723 TAGGCACCAAAGTGCTGAGCAGTATGCATCGAAGTGCGAATCACTAGGCACTATAA
1 TAGGCACCAAAGTGCTGAGCAGTATGCATCAAAGTGCGAATCACTAGGCACCATAA
* * * * * *
23895779 TAAGCACCAAAGTGCTTAGCAGTATGTATCGAAGCGCGAATCACTAGGCACCACAA
1 TAGGCACCAAAGTGCTGAGCAGTATGCATCAAAGTGCGAATCACTAGGCACCATAA
* * * *
23895835 TAGGCACCAAAGTGCTAAGCAGTATGCATCAAAGAGCGAATCACTAGGCACCGTAG
1 TAGGCACCAAAGTGCTGAGCAGTATGCATCAAAGTGCGAATCACTAGGCACCATAA
* * * *
23895891 TAGGCACCAAAATGCTGAGCAGTACGCATCAAAATACGAATCACTAGGCACC
1 TAGGCACCAAAGTGCTGAGCAGTATGCATCAAAGTGCGAATCACTAGGCACC
23895943 GTAGTGCAAA
Statistics
Matches: 144, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 144 1.00
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (56 bp):
TAGGCACCAAAGTGCTGAGCAGTATGCATCAAAGTGCGAATCACTAGGCACCATAA
Found at i:23895960 original size:22 final size:22
Alignment explanation
Indices: 23895929--23895998 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 22
23895919 TCAAAATACG
*
23895929 AATCACTAGGCACCGTAGTGCA
1 AATCAATAGGCACCGTAGTGCA
** *
23895951 AATCAATAGGCACAATAGTGTA
1 AATCAATAGGCACCGTAGTGCA
* * *
23895973 AATCAGTAGGCATCGTAGTCCA
1 AATCAATAGGCACCGTAGTGCA
23895995 AATC
1 AATC
23895999 TCATAAAATC
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.21
Consensus pattern (22 bp):
AATCAATAGGCACCGTAGTGCA
Found at i:23901086 original size:16 final size:17
Alignment explanation
Indices: 23901067--23901099 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23901057 AATTATGATA
*
23901067 TTTGAA-TATTAATTTT
1 TTTGAAGTAATAATTTT
23901083 TTTGAAGTAATAATTTT
1 TTTGAAGTAATAATTTT
23901100 CTTTTGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (17 bp):
TTTGAAGTAATAATTTT
Found at i:23905484 original size:13 final size:14
Alignment explanation
Indices: 23905447--23905483 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
23905437 GATAATAAAA
23905447 ATAAAAACAATTTCG
1 ATAAAAA-AATTTCG
*
23905462 ATAAAAAAATTTCT
1 ATAAAAAAATTTCG
23905476 ATAAAAAA
1 ATAAAAAA
23905484 TATGAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.27
Consensus pattern (14 bp):
ATAAAAAAATTTCG
Found at i:23909008 original size:3 final size:3
Alignment explanation
Indices: 23909000--23909049 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
23908990 TGGGATGTCT
23909000 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23909048 TT
1 TT
23909050 TCTTTGATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:23909869 original size:41 final size:40
Alignment explanation
Indices: 23909787--23910032 Score: 187
Period size: 41 Copynumber: 6.3 Consensus size: 40
23909777 TAATATACAT
* * * * * *
23909787 TAGCGGCGTTTGT-CCGAAACG-CACTAAAAGCTAAACTA
1 TAGCGGCGTTTTTGCCAAAACGCCACTAAAAACTGATCAA
*
23909825 TAGCGGCGTTTTTGCCAAAAACGCCACTAAAAACTGGTCAA
1 TAGCGGCGTTTTTGCC-AAAACGCCACTAAAAACTGATCAA
** *
23909866 TAGCGGCGTTTTTATCAAAACGCCACTAAAAGCTGATCAA
1 TAGCGGCGTTTTTGCCAAAACGCCACTAAAAACTGATCAA
23909906 TAGCGGCGTTTTAAT-CTC-AAACGCCACT---AA---AT---
1 TAGCGGCGTTTT--TGC-CAAAACGCCACTAAAAACTGATCAA
* * *
23909938 T-GCAGCGTTTTTGTCCCAAACGCCACAAAAAACTGATCAA
1 TAGCGGCGTTTTTG-CCAAAACGCCACTAAAAACTGATCAA
* * * *
23909978 TTGTGGCGTTTTTATCCAAAACGCCACTAAAAACTGATTAA
1 TAGCGGCGTTTTT-GCCAAAACGCCACTAAAAACTGATCAA
23910019 TAGCGGCGTTTTTG
1 TAGCGGCGTTTTTG
23910033 GTCCAAACGC
Statistics
Matches: 164, Mismatches: 24, Indels: 38
0.73 0.11 0.17
Matches are distributed among these distances:
29 1 0.01
30 1 0.01
31 19 0.12
32 1 0.01
34 2 0.01
35 2 0.01
37 2 0.01
38 13 0.08
39 2 0.01
40 40 0.24
41 79 0.48
42 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (40 bp):
TAGCGGCGTTTTTGCCAAAACGCCACTAAAAACTGATCAA
Found at i:23909886 original size:40 final size:40
Alignment explanation
Indices: 23909824--23910031 Score: 193
Period size: 41 Copynumber: 5.3 Consensus size: 40
23909814 AAGCTAAACT
** *
23909824 ATAGCGGCGTTTTTGCCAAAAACGCCACTAAAAACTGGTCA
1 ATAGCGGCGTTTTTATC-AAAACGCCACTAAAAACTGATCA
*
23909865 ATAGCGGCGTTTTTATCAAAACGCCACTAAAAGCTGATCA
1 ATAGCGGCGTTTTTATCAAAACGCCACTAAAAACTGATCA
* *
23909905 ATAGCGGCGTTTTAATCTCAAACGCCACT---AA---AT--
1 ATAGCGGCGTTTTTATC-AAAACGCCACTAAAAACTGATCA
* * * *
23909938 -T-GCAGCGTTTTTGTCCCAAACGCCACAAAAAACTGATCA
1 ATAGCGGCGTTTTTAT-CAAAACGCCACTAAAAACTGATCA
* * *
23909977 ATTGTGGCGTTTTTATCCAAAACGCCACTAAAAACTGATTA
1 ATAGCGGCGTTTTTAT-CAAAACGCCACTAAAAACTGATCA
23910018 ATAGCGGCGTTTTT
1 ATAGCGGCGTTTTT
23910032 GGTCCAAACG
Statistics
Matches: 136, Mismatches: 19, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
31 20 0.15
32 2 0.01
34 2 0.01
35 2 0.01
37 2 0.01
38 1 0.01
40 38 0.28
41 69 0.51
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (40 bp):
ATAGCGGCGTTTTTATCAAAACGCCACTAAAAACTGATCA
Found at i:23910041 original size:41 final size:40
Alignment explanation
Indices: 23909942--23910050 Score: 137
Period size: 41 Copynumber: 2.6 Consensus size: 40
23909932 CTAAATTGCA
* *
23909942 GCGTTTTTGTCCCAAACGCCACAAAAAACTGATCAATTGTG
1 GCGTTTTTGT-CCAAACGCCACAAAAAACTGATCAATAGCG
* * *
23909983 GCGTTTTTATCCAAAACGCCACTAAAAACTGATTAATAGCG
1 GCGTTTTTGTCC-AAACGCCACAAAAAACTGATCAATAGCG
*
23910024 GCGTTTTTGGTCCAAACGCCGCAAAAA
1 GCGTTTTT-GTCCAAACGCCACAAAAA
23910051 GTTTAGCAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.03
41 53 0.91
42 3 0.05
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (40 bp):
GCGTTTTTGTCCAAACGCCACAAAAAACTGATCAATAGCG
Found at i:23913474 original size:14 final size:15
Alignment explanation
Indices: 23913455--23913484 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
23913445 TGTGTTTATA
23913455 TAAATACAT-AATTC
1 TAAATACATAAATTC
23913469 TAAATACATAAATTC
1 TAAATACATAAATTC
23913484 T
1 T
23913485 GAAGTTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATACATAAATTC
Found at i:23916976 original size:31 final size:31
Alignment explanation
Indices: 23916930--23916996 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
23916920 TGGTTGTATT
* *
23916930 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
23916961 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
23916992 TTTTA
1 TTTTA
23916997 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:23917095 original size:43 final size:42
Alignment explanation
Indices: 23917048--23917190 Score: 144
Period size: 43 Copynumber: 3.3 Consensus size: 42
23917038 ATCTGCCAAA
* *
23917048 TTTAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAAGCCTTGACG
1 TTTAGCGGCGTTT-TACAAAAAGCGCCGCTAAAAGCCTTGACC
* * * * *
23917091 TTTAGCGACGCTTTACCCACAAGCGACGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTTA-CAAAAAGCGCCGCTAAAAGCCTTGACC
* * *
23917134 TTTAGCGGCGCTTTTCCCACAAA-CACCGCTAAAAGCCTTGACC
1 TTTAGCGGCG-TTTT-ACAAAAAGCGCCGCTAAAAGCCTTGACC
*
23917177 TTTAGCCGCGTTTT
1 TTTAGCGGCGTTTT
23917191 TTTCCAATAA
Statistics
Matches: 81, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
42 6 0.07
43 69 0.85
44 6 0.07
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (42 bp):
TTTAGCGGCGTTTTACAAAAAGCGCCGCTAAAAGCCTTGACC
Found at i:23918759 original size:21 final size:21
Alignment explanation
Indices: 23918742--23918787 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
23918732 CCATCGCTCG
*
23918742 TGCCTCTGCCTCTCTCGCTGC
1 TGCCGCTGCCTCTCTCGCTGC
* *
23918763 TGCCGCTGCCTCCCTCTCTGC
1 TGCCGCTGCCTCTCTCGCTGC
23918784 TGCC
1 TGCC
23918788 TCCGCTCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.20, T:0.30
Consensus pattern (21 bp):
TGCCGCTGCCTCTCTCGCTGC
Found at i:23924293 original size:9 final size:9
Alignment explanation
Indices: 23924279--23924345 Score: 107
Period size: 9 Copynumber: 7.4 Consensus size: 9
23924269 TTTTTATGTT
23924279 TTATGTAAG
1 TTATGTAAG
*
23924288 TTATGTAAA
1 TTATGTAAG
23924297 TTATGTAAG
1 TTATGTAAG
*
23924306 TTATGTAAA
1 TTATGTAAG
23924315 TTATGTAAG
1 TTATGTAAG
*
23924324 TTATGTGAG
1 TTATGTAAG
23924333 TTATGTAAG
1 TTATGTAAG
23924342 TTAT
1 TTAT
23924346 TTTTTAAGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:23924767 original size:241 final size:240
Alignment explanation
Indices: 23924344--23925018 Score: 1217
Period size: 241 Copynumber: 2.8 Consensus size: 240
23924334 TATGTAAGTT
* *
23924344 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACGA-CTAGGGAGGACCCATTATATCTTACAAC
1 ATTTTTTAAGATTCATCATACGTGGCGTTGTTAC-ACCTAGGGAGGATCCATTATATCTTACAGC
23924408 TCGATATAAGGCAAGCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
65 TCGATATAAGGCAA-CCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
23924473 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
129 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
* *
23924538 ATTGAATAGTAAATTAGCTCGATAGAACTTTTTTCAAGTCTTTTTGA
194 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGA
23924585 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
1 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
*
23924650 CGATATAAGGCAACCTGTCAGGTTTCCAGCCTATATGCTTTGAATCTTTAAAATATTTAAAAAAA
66 CGATATAAGGCAACC-GTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
*
23924715 GGTTGGAGAGAAGGTCTGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
130 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
23924780 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGA
195 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGA
* *
23924826 ATTTTTTAAGATTCATCATAGGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGCT
1 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
* *
23924891 CGATGTAAGGCAACCCGTCAGGTTTTCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
66 CGATATAAGGCAA-CCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
23924956 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
130 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
23925019 ATTAATTCAT
Statistics
Matches: 419, Mismatches: 12, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
240 3 0.01
241 414 0.99
242 2 0.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (240 bp):
ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
CGATATAAGGCAACCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAAG
GTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATAT
TCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGA
Found at i:23927844 original size:25 final size:25
Alignment explanation
Indices: 23927816--23927880 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
23927806 GAGAAACAGC
23927816 AGAGGGATGCCGACGGAGATGTAGA
1 AGAGGGATGCCGACGGAGATGTAGA
* * *
23927841 AGAGGGATGCCAATGGAGATGTAGC
1 AGAGGGATGCCGACGGAGATGTAGA
*
23927866 AGAGGGCTGCCGACG
1 AGAGGGATGCCGACG
23927881 ACAATGCAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.43, T:0.12
Consensus pattern (25 bp):
AGAGGGATGCCGACGGAGATGTAGA
Found at i:23929924 original size:20 final size:18
Alignment explanation
Indices: 23929879--23929916 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
23929869 GAAAGGCTGA
*
23929879 GAAAGAAAAGGGAATTGG
1 GAAAGAAAAGGGAATGGG
23929897 GAAAGAAAAGGGAATCGGG
1 GAAAGAAAAGGGAAT-GGG
23929916 G
1 G
23929917 GAGAGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.47, C:0.03, G:0.42, T:0.08
Consensus pattern (18 bp):
GAAAGAAAAGGGAATGGG
Found at i:23929989 original size:72 final size:72
Alignment explanation
Indices: 23929862--23930000 Score: 185
Period size: 72 Copynumber: 1.9 Consensus size: 72
23929852 GAAATGGCTT
*
23929862 AGGCTGAGAAAGGCTGAGAAAGAAAAGGGAATTGGGAAAGAAAAGGGAAT-CGGGGGAGAGAAAT
1 AGGCTGAGAAAGGCTGAGAAAGAAAAGGGAATCGGGAAAG-AAAGGGAATGCGGGGGAGAGAAAT
23929926 AGAAGTAC
65 AGAAGTAC
* *
23929934 AGGCTGAGAATGGCTGAGAAAG-AAAGTGGAATCGGGAAAG-AAGGGAATTGGGGGGGGGAGAGA
1 AGGCTGAGAAAGGCTGAGAAAGAAAAG-GGAATCGGGAAAGAAAGGGAA-T--GCGGGGGAGAGA
23929997 AATA
62 AATA
23930001 AAACGGCGTC
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
70 7 0.12
71 5 0.08
72 33 0.56
74 14 0.24
ACGTcount: A:0.42, C:0.05, G:0.42, T:0.11
Consensus pattern (72 bp):
AGGCTGAGAAAGGCTGAGAAAGAAAAGGGAATCGGGAAAGAAAGGGAATGCGGGGGAGAGAAATA
GAAGTAC
Found at i:23930152 original size:22 final size:20
Alignment explanation
Indices: 23930125--23930181 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 20
23930115 TGTTTGACTT
23930125 TTTTATAATTTTTATATTGAA
1 TTTTATAATTTTTATATT-AA
23930146 TTATTAT-ATCTTTTATATTAA
1 TT-TTATAAT-TTTTATATTAA
23930167 TTTTAAATAATTTTT
1 TTTT--ATAATTTTT
23930182 TTAAAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
20 2 0.06
21 8 0.26
22 19 0.61
23 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTTATAATTTTTATATTAA
Found at i:23930562 original size:14 final size:14
Alignment explanation
Indices: 23930539--23930589 Score: 84
Period size: 14 Copynumber: 3.6 Consensus size: 14
23930529 ATAACCCTTA
*
23930539 AACCCATAACCCCT
1 AACCCCTAACCCCT
23930553 AACCCCTAACCCCT
1 AACCCCTAACCCCT
23930567 AACCCCTAACCCCT
1 AACCCCTAACCCCT
*
23930581 AACACCTAA
1 AACCCCTAA
23930590 ACCTTAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.35, C:0.51, G:0.00, T:0.14
Consensus pattern (14 bp):
AACCCCTAACCCCT
Found at i:23930569 original size:21 final size:21
Alignment explanation
Indices: 23930539--23930589 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
23930529 ATAACCCTTA
*
23930539 AACCCATAACCCCTAACCCCT
1 AACCCCTAACCCCTAACCCCT
23930560 AACCCCTAACCCCTAACCCCT
1 AACCCCTAACCCCTAACCCCT
*
23930581 AACACCTAA
1 AACCCCTAA
23930590 ACCTTAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.35, C:0.51, G:0.00, T:0.14
Consensus pattern (21 bp):
AACCCCTAACCCCTAACCCCT
Found at i:23930605 original size:28 final size:28
Alignment explanation
Indices: 23930534--23930625 Score: 89
Period size: 28 Copynumber: 3.2 Consensus size: 28
23930524 ACAACATAAC
* *
23930534 CCTTAAACCCATAACCCCTAACCCCTAAC
1 CCTTAAACCCCTAACCCCTAA-CCCTAAA
*
23930563 CCCT-AACCCCTAACCCCTAACACCTAAA
1 CCTTAAACCCCTAACCCCTAAC-CCTAAA
* * *
23930591 CCTTAAATCCC-AACCCATAATCCATAAA
1 CCTTAAACCCCTAACCCCTAA-CCCTAAA
23930619 CCTTAAA
1 CCTTAAA
23930626 ATAGTAACTC
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
27 1 0.02
28 43 0.81
29 9 0.17
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.18
Consensus pattern (28 bp):
CCTTAAACCCCTAACCCCTAACCCTAAA
Found at i:23930937 original size:24 final size:24
Alignment explanation
Indices: 23930909--23930957 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
23930899 CCAAAACAAC
*
23930909 AATTAATTTTTATATAGACTTTTA
1 AATTAATTTTTATATAAACTTTTA
23930933 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
23930957 A
1 A
23930958 TAAATATACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:23931613 original size:41 final size:41
Alignment explanation
Indices: 23931568--23931705 Score: 197
Period size: 41 Copynumber: 3.4 Consensus size: 41
23931558 AGTTATATGA
* * *
23931568 CTTTTAGCAGCGTTTTACCAAAAACGCCGCTAGTGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* *
23931609 CTTTTAGCGACGTTTTACCGAAAGCGCCGCTAATGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * *
23931650 CTTTTACCGGCGTTTTACCAAAAGCGCCGCTATTTCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
23931691 -TTTTAGCGGCGTTTT
1 CTTTTAGCGGCGTTTT
23931706 TTGTAAAATG
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 14 0.16
41 72 0.84
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (41 bp):
CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:23931736 original size:81 final size:82
Alignment explanation
Indices: 23931568--23931737 Score: 209
Period size: 81 Copynumber: 2.1 Consensus size: 82
23931558 AGTTATATGA
* * *
23931568 CTTTTAGCAGCGTTTTACCAAAAACGCCGCTAGTGCTCTGTCTTTTAGCGACGTTTTACCGAAAG
1 CTTTTACCGGCGTTTTACCAAAAACGCCGCTAGTGCTCTGTCTTTTAGCGACGTTTTACCGAAAA
23931633 CGCCGCTAATGCTCTGT
66 CGCCGCTAATGCTCTGT
* * * * **
23931650 CTTTTACCGGCGTTTTACCAAAAGCGCCGCTATTTCTCTGT-TTTTAGCGGCGTTTT-TTGTAAA
1 CTTTTACCGGCGTTTTACCAAAAACGCCGCTAGTGCTCTGTCTTTTAGCGACGTTTTACCG-AAA
* *
23931713 ATGCCGCTATTGCTCTGT
65 ACGCCGCTAATGCTCTGT
*
23931731 GTTTTAC
1 CTTTTAC
23931738 AATTTTTGCG
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
80 1 0.01
81 38 0.51
82 36 0.48
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (82 bp):
CTTTTACCGGCGTTTTACCAAAAACGCCGCTAGTGCTCTGTCTTTTAGCGACGTTTTACCGAAAA
CGCCGCTAATGCTCTGT
Found at i:23936385 original size:30 final size:30
Alignment explanation
Indices: 23936349--23936410 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
23936339 TGTTGGAATC
23936349 AATATTATATAACTTTGAAATCCATAAACT
1 AATATTATATAACTTTGAAATCCATAAACT
23936379 AATATTATATAACTTTGAAATCCATAAACT
1 AATATTATATAACTTTGAAATCCATAAACT
23936409 AA
1 AA
23936411 CCTCATCATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.35
Consensus pattern (30 bp):
AATATTATATAACTTTGAAATCCATAAACT
Found at i:23937541 original size:7 final size:7
Alignment explanation
Indices: 23937501--23937540 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
23937491 TAATTAAGAT
23937501 TTGAGAA
1 TTGAGAA
23937508 TTGAGAA
1 TTGAGAA
23937515 TTGAGAA
1 TTGAGAA
*
23937522 CTGAGAA
1 TTGAGAA
*
23937529 TTGAGTA
1 TTGAGAA
23937536 TTGAG
1 TTGAG
23937541 TTGAAAAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.38, C:0.03, G:0.30, T:0.30
Consensus pattern (7 bp):
TTGAGAA
Found at i:23941656 original size:11 final size:11
Alignment explanation
Indices: 23941640--23941669 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
23941630 ATATCAAATC
23941640 ATTAAGAATAA
1 ATTAAGAATAA
23941651 ATTAAGAATAA
1 ATTAAGAATAA
23941662 ATTAAGAA
1 ATTAAGAA
23941670 CAAAATTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (11 bp):
ATTAAGAATAA
Found at i:23945116 original size:55 final size:55
Alignment explanation
Indices: 23944945--23945193 Score: 209
Period size: 55 Copynumber: 4.4 Consensus size: 55
23944935 ATATGTTATG
** * * *
23944945 TAACAATTAATTTAAAAATATAAATAATTTATTTAAAAAAAAGCAGTATT-TTAACA
1 TAACAATCGATTTAAACATATAAATAATTTA-TTAAAAAGAAGTAGTATTCTT-ACA
* ** *
23945001 AAACAATCGATTTAAACATATAAACAATCAATTTAAAAGAAGAAGAAGTAATATTCTTACA
1 TAACAATCGATTTAAACATAT--A-AAT-AATTTATTA-AA-AAGAAGTAGTATTCTTACA
* * *
23945062 TAACAATCGATTTAACCGTATAAATAATTTATTCAAAAGAAGTAGTATTCTTACA
1 TAACAATCGATTTAAACATATAAATAATTTATTAAAAAGAAGTAGTATTCTTACA
* * ** * **
23945117 TAACAATCGATTTAAACATGTAAACAATCAATTAAAAA-AA-TAGTATCCCGACA
1 TAACAATCGATTTAAACATATAAATAATTTATTAAAAAGAAGTAGTATTCTTACA
*
23945170 TAACAAT-TATTTTAAACATATAAA
1 TAACAATCGA-TTTAAACATATAAA
23945194 CAATCGATTC
Statistics
Matches: 157, Mismatches: 28, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
52 1 0.01
53 30 0.19
54 2 0.01
55 49 0.31
56 19 0.12
57 6 0.04
58 4 0.03
59 5 0.03
60 8 0.05
61 31 0.20
62 2 0.01
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.31
Consensus pattern (55 bp):
TAACAATCGATTTAAACATATAAATAATTTATTAAAAAGAAGTAGTATTCTTACA
Found at i:23946545 original size:13 final size:13
Alignment explanation
Indices: 23946527--23946553 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23946517 TTTATATATA
23946527 TATATATATAAAC
1 TATATATATAAAC
23946540 TATATATATAAAC
1 TATATATATAAAC
23946553 T
1 T
23946554 TCTACTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:23946560 original size:6 final size:6
Alignment explanation
Indices: 23946551--23946589 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
23946541 ATATATATAA
*
23946551 ACTTCT ACTTCT ACTTCT ACTTCT ACTTCT ACTTGT ACT
1 ACTTCT ACTTCT ACTTCT ACTTCT ACTTCT ACTTCT ACT
23946590 ATACTACTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.18, C:0.31, G:0.03, T:0.49
Consensus pattern (6 bp):
ACTTCT
Found at i:23954868 original size:23 final size:23
Alignment explanation
Indices: 23954838--23954883 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
23954828 ATTATTTCCT
23954838 TCAATGAATTGAGCTTCTACCTG
1 TCAATGAATTGAGCTTCTACCTG
*
23954861 TCAATGAATTGGGCTTCTACCTG
1 TCAATGAATTGAGCTTCTACCTG
23954884 ATTTTTTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (23 bp):
TCAATGAATTGAGCTTCTACCTG
Found at i:23957227 original size:13 final size:13
Alignment explanation
Indices: 23957209--23957237 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
23957199 TCAAAACTCT
23957209 TTTTATGTTTTCA
1 TTTTATGTTTTCA
23957222 TTTTATGTTTTCA
1 TTTTATGTTTTCA
23957235 TTT
1 TTT
23957238 AAAAATTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (13 bp):
TTTTATGTTTTCA
Found at i:23958590 original size:19 final size:19
Alignment explanation
Indices: 23958563--23958617 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
23958553 AGAGTTTATA
23958563 TATAC-TTTTTATAATTTCT
1 TATACATTTTTATAATTT-T
*
23958582 T-TACATTTTTATGATTTT
1 TATACATTTTTATAATTTT
*
23958600 TATATATTTTTA-AATTTT
1 TATACATTTTTATAATTTT
23958618 CAAGGTTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 10 0.32
19 21 0.68
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.65
Consensus pattern (19 bp):
TATACATTTTTATAATTTT
Found at i:23958616 original size:8 final size:9
Alignment explanation
Indices: 23958563--23958617 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
23958553 AGAGTTTATA
*
23958563 TATACTTTT
1 TATAATTTT
23958572 TATAATTTCT
1 TATAATTT-T
23958582 T-TACATTTT
1 TATA-ATTTT
*
23958591 TATGATTTT
1 TATAATTTT
23958600 TATATATTTT
1 TATA-ATTTT
23958610 TA-AATTTT
1 TATAATTTT
23958618 CAAGGTTTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
8 5 0.13
9 20 0.51
10 14 0.36
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.65
Consensus pattern (9 bp):
TATAATTTT
Found at i:23959651 original size:19 final size:19
Alignment explanation
Indices: 23959627--23959665 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
23959617 AAGTTAATAA
*
23959627 TAAATTTGATTATGGTGGG
1 TAAATTTGATTATAGTGGG
23959646 TAAATTTGATTATAGTGGG
1 TAAATTTGATTATAGTGGG
23959665 T
1 T
23959666 GACAATGGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (19 bp):
TAAATTTGATTATAGTGGG
Found at i:23963164 original size:25 final size:24
Alignment explanation
Indices: 23963127--23963181 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
23963117 ATTATTATTA
*
23963127 AATAGATATTTTATAATTA-TTAAATT
1 AATA-ATAATTTAT-ATTAGTTAAA-T
23963153 AATAATAATTTATATTAGTTAAAT
1 AATAATAATTTATATTAGTTAAAT
23963177 AATAA
1 AATAA
23963182 AATAATACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 10 0.37
25 13 0.48
26 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (24 bp):
AATAATAATTTATATTAGTTAAAT
Found at i:23963212 original size:17 final size:19
Alignment explanation
Indices: 23963177--23963214 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
23963167 TTAGTTAAAT
23963177 AATAAAATAATACAAAGAA
1 AATAAAATAATACAAAGAA
23963196 AATAAAAT-ATA-AAAGAA
1 AATAAAATAATACAAAGAA
23963213 AA
1 AA
23963215 ACAAAGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.42
18 3 0.16
19 8 0.42
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (19 bp):
AATAAAATAATACAAAGAA
Found at i:23963292 original size:13 final size:14
Alignment explanation
Indices: 23963259--23963292 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
23963249 CGAAACAGGG
23963259 AAGAAAAAGAAAGA
1 AAGAAAAAGAAAGA
23963273 AAG-AAAAGAAA-A
1 AAGAAAAAGAAAGA
23963285 AAGAAAAA
1 AAGAAAAA
23963293 CTAATGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 12 0.63
14 3 0.16
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAAAGA
Found at i:23964335 original size:45 final size:45
Alignment explanation
Indices: 23964280--23964390 Score: 161
Period size: 45 Copynumber: 2.5 Consensus size: 45
23964270 CGACTACTGT
*
23964280 TACTGTTACCGTTACTATTACCGATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTATTACAGATTCAG-CACTTTGTGTGTCGAA
* * *
23964325 TACTATTACCGTTACTATTATAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTATTACAGATTCAGCACTTTGTGTGTCGAA
*
23964370 TACTGTTACTGTTACTATTAC
1 TACTGTTACCGTTACTATTAC
23964391 TGCTACCGTT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 57 0.98
46 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGTTACTATTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:23964381 original size:6 final size:6
Alignment explanation
Indices: 23964370--23964413 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
23964360 GTGTGTTGAA
* * *
23964370 TACTGT TACTGT TACTAT TACTGC TACCGT TACTGAT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT T
23964414 TAGGTACTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:23964401 original size:18 final size:19
Alignment explanation
Indices: 23964370--23964411 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
23964360 GTGTGTTGAA
* *
23964370 TACTGTTACTGTTACT-AT
1 TACTGCTACCGTTACTGAT
23964388 TACTGCTACCGTTACTGAT
1 TACTGCTACCGTTACTGAT
23964407 TACTG
1 TACTG
23964412 TTTAGGTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (19 bp):
TACTGCTACCGTTACTGAT
Found at i:23965403 original size:26 final size:26
Alignment explanation
Indices: 23965372--23965430 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 26
23965362 AGCTTGGATT
*
23965372 TATCACTCATTGACACTAATAAGAAA
1 TATCACTCATTGACACTAACAAGAAA
23965398 TATCACTCATTGACACTAACAAGAAA
1 TATCACTCATTGACACTAACAAGAAA
23965424 TCATCAC
1 T-ATCAC
23965431 CGCTTTCATT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.84
27 5 0.16
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.25
Consensus pattern (26 bp):
TATCACTCATTGACACTAACAAGAAA
Found at i:23970543 original size:26 final size:25
Alignment explanation
Indices: 23970507--23970561 Score: 92
Period size: 26 Copynumber: 2.2 Consensus size: 25
23970497 TGAAATTCCA
23970507 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAA-CCATT
*
23970533 ATCATGGAACATTTACCTAACCATT
1 ATCATGAAACATTTACCTAACCATT
23970558 ATCA
1 ATCA
23970562 ATTTGTATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.31
Consensus pattern (25 bp):
ATCATGAAACATTTACCTAACCATT
Found at i:23977497 original size:26 final size:26
Alignment explanation
Indices: 23977461--23977542 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
23977451 TGAAATTCCA
23977461 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
23977487 ATCATGAAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
23977513 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
23977539 ATCA
1 ATCA
23977543 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:23978300 original size:22 final size:23
Alignment explanation
Indices: 23978275--23978320 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
23978265 CAACCAAATC
23978275 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
23978297 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
23978320 A
1 A
23978321 CGTTATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:23986618 original size:17 final size:17
Alignment explanation
Indices: 23986596--23986632 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
23986586 CCTTACCTAC
23986596 TCTAATTAACCTTTTTG
1 TCTAATTAACCTTTTTG
23986613 TCTAATTAACCTTTTTG
1 TCTAATTAACCTTTTTG
23986630 TCT
1 TCT
23986633 TTTTCACTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.19, G:0.05, T:0.54
Consensus pattern (17 bp):
TCTAATTAACCTTTTTG
Found at i:23988883 original size:29 final size:29
Alignment explanation
Indices: 23988849--23988907 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
23988839 ACAAAAATAA
* *
23988849 TCTCAAATCATAAAATGAACGAGTACACC
1 TCTCAAATCATAAAATGAACAAGGACACC
23988878 TCTCAAATCATAAAATGAACAAGGACACC
1 TCTCAAATCATAAAATGAACAAGGACACC
23988907 T
1 T
23988908 ACTGTTATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.46, C:0.24, G:0.10, T:0.20
Consensus pattern (29 bp):
TCTCAAATCATAAAATGAACAAGGACACC
Found at i:23989142 original size:15 final size:16
Alignment explanation
Indices: 23989122--23989151 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23989112 TGTTTATATA
23989122 TATAAATATA-AAAAG
1 TATAAATATATAAAAG
23989137 TATAAATATATAAAA
1 TATAAATATATAAAA
23989152 TTCGACTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (16 bp):
TATAAATATATAAAAG
Found at i:23991631 original size:213 final size:213
Alignment explanation
Indices: 23991264--23991688 Score: 832
Period size: 213 Copynumber: 2.0 Consensus size: 213
23991254 GACCATAATT
* *
23991264 TCACTCAATCGAAACAAGTATGGGATAGATTTCCTATTACATGCACTCAACCATTAAGTTAGTCT
1 TCACTCAATCCAAACAAGTATGGGATAGATTTCCTATCACATGCACTCAACCATTAAGTTAGTCT
23991329 CATAGAATGACAAGATAATAACACATCTAGATGAGCTCATCACATCATCATTCCCAATTTACATT
66 CATAGAATGACAAGATAATAACACATCTAGATGAGCTCATCACATCATCATTCCCAATTTACATT
23991394 TCATGTTAGTCCCATTGAATTTTTTGGTTTTTCAATAGATATCTCATTTCCCGTCAGTTCTTACA
131 TCATGTTAGTCCCATTGAATTTTTTGGTTTTTCAATAGATATCTCATTTCCCGTCAGTTCTTACA
23991459 AGTGATCATTTCGAGTAA
196 AGTGATCATTTCGAGTAA
23991477 TCACTCAATCCAAACAAGTATGGGATAGATTTCCTATCACATGCACTCAACCATTAAGTTAGTCT
1 TCACTCAATCCAAACAAGTATGGGATAGATTTCCTATCACATGCACTCAACCATTAAGTTAGTCT
23991542 CATAGAATGACAAGATAATAACACATCTAGATGAGCTCATCACATCATCATTCCCAATTTACATT
66 CATAGAATGACAAGATAATAACACATCTAGATGAGCTCATCACATCATCATTCCCAATTTACATT
23991607 TCATGTTAGTCCCATTGAATTTTTTGGTTTTTCAATAGATATCTCATTTCCCGTCAGTTCTTACA
131 TCATGTTAGTCCCATTGAATTTTTTGGTTTTTCAATAGATATCTCATTTCCCGTCAGTTCTTACA
23991672 AGTGATCATTTCGAGTA
196 AGTGATCATTTCGAGTA
23991689 CGCACTCCCG
Statistics
Matches: 210, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
213 210 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (213 bp):
TCACTCAATCCAAACAAGTATGGGATAGATTTCCTATCACATGCACTCAACCATTAAGTTAGTCT
CATAGAATGACAAGATAATAACACATCTAGATGAGCTCATCACATCATCATTCCCAATTTACATT
TCATGTTAGTCCCATTGAATTTTTTGGTTTTTCAATAGATATCTCATTTCCCGTCAGTTCTTACA
AGTGATCATTTCGAGTAA
Found at i:23994502 original size:12 final size:12
Alignment explanation
Indices: 23994485--23994510 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23994475 CAAATCCTTT
23994485 TTGTAATTTTTG
1 TTGTAATTTTTG
23994497 TTGTAATTTTTG
1 TTGTAATTTTTG
23994509 TT
1 TT
23994511 AAAAGAGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69
Consensus pattern (12 bp):
TTGTAATTTTTG
Found at i:23995869 original size:6 final size:6
Alignment explanation
Indices: 23995860--23995898 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
23995850 TGTGTACTGC
* * *
23995860 TACTAT TACTGT TACTAT TACTGT TACTGT TACTAT TAC
1 TACTAT TACTAT TACTAT TACTAT TACTAT TACTAT TAC
23995899 GGTGTATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.49
Consensus pattern (6 bp):
TACTAT
Found at i:23995875 original size:12 final size:12
Alignment explanation
Indices: 23995854--23995898 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
23995844 GTACTCTGTG
*
23995854 TACTGCTACTAT
1 TACTGTTACTAT
23995866 TACTGTTACTAT
1 TACTGTTACTAT
*
23995878 TACTGTTACTGT
1 TACTGTTACTAT
*
23995890 TACTATTAC
1 TACTGTTAC
23995899 GGTGTATTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.47
Consensus pattern (12 bp):
TACTGTTACTAT
Found at i:23995881 original size:18 final size:18
Alignment explanation
Indices: 23995860--23995898 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
23995850 TGTGTACTGC
23995860 TACTATTACTGTTACTAT
1 TACTATTACTGTTACTAT
*
23995878 TACTGTTACTGTTACTAT
1 TACTATTACTGTTACTAT
23995896 TAC
1 TAC
23995899 GGTGTATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.49
Consensus pattern (18 bp):
TACTATTACTGTTACTAT
Found at i:23997264 original size:9 final size:9
Alignment explanation
Indices: 23997246--23997284 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
23997236 TTACATATGC
23997246 TATTCGAAT
1 TATTCGAAT
*
23997255 TATTCAAAT
1 TATTCGAAT
*
23997264 TATTCGAGT
1 TATTCGAAT
23997273 TATTCGAAT
1 TATTCGAAT
23997282 TAT
1 TAT
23997285 AAAATTCAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:23998607 original size:20 final size:20
Alignment explanation
Indices: 23998570--23998607 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23998560 TGATGGGGAG
*
23998570 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
23998590 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
23998608 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:24000558 original size:46 final size:46
Alignment explanation
Indices: 24000506--24000860 Score: 561
Period size: 46 Copynumber: 7.7 Consensus size: 46
24000496 AGTGTGCTCT
*
24000506 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24000552 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
24000598 CTGATATG-AATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24000643 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24000689 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
24000735 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **** *
24000781 GTGATATGAAATAAACAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
24000827 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
24000861 CACTATTGCA
Statistics
Matches: 288, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
45 45 0.16
46 243 0.84
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:24004001 original size:20 final size:20
Alignment explanation
Indices: 24003964--24004001 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24003954 TGATGGGGAG
*
24003964 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
24003984 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
24004002 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:24005938 original size:46 final size:46
Alignment explanation
Indices: 24005886--24006203 Score: 471
Period size: 46 Copynumber: 7.0 Consensus size: 46
24005876 AGTGTGCTCT
* *
24005886 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
24005932 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24005978 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24006024 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24006070 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
24006116 GTGATATGAAAT-AACAAGACCAT-GTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
24006160 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
24006204 TCATGTCAAA
Statistics
Matches: 251, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
43 1 0.00
44 28 0.11
45 17 0.07
46 205 0.82
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:24006855 original size:3 final size:3
Alignment explanation
Indices: 24006847--24006884 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
24006837 GACCATCTGA
*
24006847 AAG AAG AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
24006885 AGGGAGATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:24012827 original size:31 final size:31
Alignment explanation
Indices: 24012792--24012850 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
24012782 TTAAAATCTA
*
24012792 ATTAAATAAAAA-AATATATATTAATTTTAAT
1 ATTAAATAAAAATAAT-CATATTAATTTTAAT
24012823 ATTAAATAAAAATAATCATATTAATTTT
1 ATTAAATAAAAATAATCATATTAATTTT
24012851 TGTTAGAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 23 0.88
32 3 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (31 bp):
ATTAAATAAAAATAATCATATTAATTTTAAT
Found at i:24012917 original size:16 final size:18
Alignment explanation
Indices: 24012882--24012919 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
24012872 ATCCTTATTT
24012882 AAATAAAATACAATAGTA
1 AAATAAAATACAATAGTA
24012900 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
24012916 AAAT
1 AAAT
24012920 TCATATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:24017389 original size:16 final size:18
Alignment explanation
Indices: 24017354--24017391 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
24017344 ATCCTTATTT
24017354 AAATAAAATACAACAGTA
1 AAATAAAATACAACAGTA
24017372 AAATAAAATA-AA-AGTA
1 AAATAAAATACAACAGTA
24017388 AAAT
1 AAAT
24017392 CCATATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.18
Consensus pattern (18 bp):
AAATAAAATACAACAGTA
Found at i:24024765 original size:7 final size:7
Alignment explanation
Indices: 24024753--24024778 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
24024743 TTATAATATA
24024753 ATATAAT
1 ATATAAT
24024760 ATATAAT
1 ATATAAT
24024767 ATATAAT
1 ATATAAT
24024774 ATATA
1 ATATA
24024779 TGCTTAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
ATATAAT
Found at i:24024765 original size:12 final size:12
Alignment explanation
Indices: 24024744--24024776 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
24024734 ACTTAATTAT
24024744 TATAATATAATA
1 TATAATATAATA
24024756 TA-ATATATAATA
1 TATA-ATATAATA
24024768 TATAATATA
1 TATAATATA
24024777 TATGCTTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.05
12 17 0.89
13 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TATAATATAATA
Found at i:24026800 original size:29 final size:29
Alignment explanation
Indices: 24026755--24026812 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
24026745 TATGATATTT
24026755 TTTGAGAGAACGGAACAAGAAATGACTTA
1 TTTGAGAGAACGGAACAAGAAATGACTTA
* * *
24026784 TTTGAGAGAATGTAACAAGAGATGACTTA
1 TTTGAGAGAACGGAACAAGAAATGACTTA
24026813 CAAACTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.24
Consensus pattern (29 bp):
TTTGAGAGAACGGAACAAGAAATGACTTA
Found at i:24027134 original size:46 final size:46
Alignment explanation
Indices: 24027058--24027149 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
24027048 CTTGATCAAG
* *
24027058 TACCGACATTTGATGAAAGTGAGCTGATGTTAAATATTAAAGAGGA
1 TACCAACATTTGATAAAAGTGAGCTGATGTTAAATATTAAAGAGGA
* *
24027104 TACCAACATTTGATAAAAGTGAGCTTATGTTAAATATTGAAGAGGA
1 TACCAACATTTGATAAAAGTGAGCTGATGTTAAATATTAAAGAGGA
24027150 AATAACCCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (46 bp):
TACCAACATTTGATAAAAGTGAGCTGATGTTAAATATTAAAGAGGA
Found at i:24027915 original size:13 final size:13
Alignment explanation
Indices: 24027897--24027941 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
24027887 ATTTTAAATA
24027897 TTTTTATATTTAC
1 TTTTTATATTTAC
* *
24027910 TTTTTAAATTTAAA
1 TTTTTATATTT-AC
*
24027924 ATTTTATATTTAC
1 TTTTTATATTTAC
24027937 TTTTT
1 TTTTT
24027942 CTCGTCAACC
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTTATATTTAC
Found at i:24028923 original size:25 final size:26
Alignment explanation
Indices: 24028885--24028948 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
24028875 TATAAAAATT
24028885 TAATTT-TTTATTT-AATCGAATT-GAA
1 TAATTTATTT-TTTAAATC-AATTCGAA
24028910 TAATTTATTTTTTAAATCAATTCGAA
1 TAATTTATTTTTTAAATCAATTCGAA
* *
24028936 TAAGTAATTTTTT
1 TAATTTATTTTTT
24028949 TTAAGTTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 13 0.38
26 21 0.62
ACGTcount: A:0.36, C:0.05, G:0.06, T:0.53
Consensus pattern (26 bp):
TAATTTATTTTTTAAATCAATTCGAA
Found at i:24030370 original size:22 final size:22
Alignment explanation
Indices: 24030303--24030379 Score: 74
Period size: 22 Copynumber: 3.6 Consensus size: 22
24030293 TTTAAGTTTT
24030303 TTTTTTAATTTTTAATTAATGT-
1 TTTTTT-ATTTTTAATTAATGTA
* * *
24030325 TTTGATGATATTT--TTAAT-TA
1 TTT-TTTATTTTTAATTAATGTA
24030345 -TTTTTATTTTTAATTAATGTA
1 TTTTTTATTTTTAATTAATGTA
24030366 TTTTTTATTTTTAA
1 TTTTTTATTTTTAA
24030380 CTCTTTTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
18 6 0.14
19 3 0.07
20 10 0.23
21 2 0.05
22 21 0.49
23 1 0.02
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (22 bp):
TTTTTTATTTTTAATTAATGTA
Found at i:24039973 original size:3 final size:3
Alignment explanation
Indices: 24039965--24039999 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
24039955 GGTGATAAAT
24039965 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
24040000 AGCTTAGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:24051177 original size:6 final size:6
Alignment explanation
Indices: 24051162--24051198 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
24051152 TAAAAACTAC
*
24051162 AAAAAA AAAAAG -AAAAG AAAAAG AAAAAG -AAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
24051199 GATATATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
5 10 0.36
6 18 0.64
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:24051177 original size:11 final size:11
Alignment explanation
Indices: 24051163--24051198 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
24051153 AAAAACTACA
24051163 AAAAAAAAAAG
1 AAAAAAAAAAG
*
24051174 AAAAGAAAAAG
1 AAAAAAAAAAG
*
24051185 AAAAAGAAAAG
1 AAAAAAAAAAG
24051196 AAA
1 AAA
24051199 GATATATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:24051188 original size:17 final size:17
Alignment explanation
Indices: 24051162--24051198 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
24051152 TAAAAACTAC
24051162 AAAAAAAAAAAGAAAAG
1 AAAAAAAAAAAGAAAAG
*
24051179 AAAAAGAAAAAGAAAAG
1 AAAAAAAAAAAGAAAAG
24051196 AAA
1 AAA
24051199 GATATATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAGAAAAG
Found at i:24058544 original size:25 final size:25
Alignment explanation
Indices: 24058515--24058564 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
24058505 GAATAATTTT
*
24058515 AATATTTGATATTGCCTAATAAATG
1 AATATCTGATATTGCCTAATAAATG
* *
24058540 AATATCTGATATTGCTTAGTAAATG
1 AATATCTGATATTGCCTAATAAATG
24058565 TCAAGCCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (25 bp):
AATATCTGATATTGCCTAATAAATG
Found at i:24060562 original size:21 final size:21
Alignment explanation
Indices: 24060538--24060586 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
24060528 TTATGTGTCT
24060538 ATACTATATATT-ATAAAAATA
1 ATACTATATATTCATAAAAA-A
24060559 ATAC-ACT-TATTCATAAAAAA
1 ATACTA-TATATTCATAAAAAA
*
24060579 ATGCTATA
1 ATACTATA
24060587 ATTTTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 8
0.72 0.03 0.25
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.53, C:0.10, G:0.02, T:0.35
Consensus pattern (21 bp):
ATACTATATATTCATAAAAAA
Found at i:24063119 original size:20 final size:19
Alignment explanation
Indices: 24063091--24063132 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
24063081 AGCCCAGCAT
24063091 ATTGAGACTTTAATGATTTC
1 ATTGAGAC-TTAATGATTTC
* *
24063111 ATTGGGACTTCATGATTTC
1 ATTGAGACTTAATGATTTC
24063130 ATT
1 ATT
24063133 TGAAAGATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (19 bp):
ATTGAGACTTAATGATTTC
Found at i:24065569 original size:12 final size:12
Alignment explanation
Indices: 24065554--24065581 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
24065544 CTTTTAACCT
24065554 TTTTTTTTTAAA
1 TTTTTTTTTAAA
24065566 TTTTTTTTTAAA
1 TTTTTTTTTAAA
24065578 TTTT
1 TTTT
24065582 CCATATTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTAAA
Found at i:24067459 original size:22 final size:20
Alignment explanation
Indices: 24067409--24067460 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
24067399 ATACATTACT
*
24067409 TTTACCATT-TTTTATTATT
1 TTTACCATTATTTTATTATA
**
24067428 TTTAATATTATTTACTATTATA
1 TTTACCATTATTT--TATTATA
24067450 TTTACCATTAT
1 TTTACCATTAT
24067461 CGTTATTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 7 0.28
20 3 0.12
22 15 0.60
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTACCATTATTTTATTATA
Found at i:24067496 original size:20 final size:21
Alignment explanation
Indices: 24067473--24067512 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
24067463 TTATTATTAT
*
24067473 TATTATTAGTA-TATTTTTTC
1 TATTATTAGAATTATTTTTTC
24067493 TATTATTAGAATTATTTTTT
1 TATTATTAGAATTATTTTTT
24067513 AGTTTCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (21 bp):
TATTATTAGAATTATTTTTTC
Found at i:24067640 original size:23 final size:23
Alignment explanation
Indices: 24067596--24067641 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
24067586 TCCTAATAAA
*
24067596 TATATGTATACATATTTAAATAC
1 TATATGTATACACATTTAAATAC
*
24067619 TATAT-TATACACATCTTTAATAC
1 TATATGTATACACAT-TTAAATAC
24067642 CACGTTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.43
Consensus pattern (23 bp):
TATATGTATACACATTTAAATAC
Found at i:24068453 original size:4 final size:4
Alignment explanation
Indices: 24068444--24068477 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
24068434 ATGTTTTATT
* *
24068444 TTTA TTTA TTTA TTTA TTTA TTTA CTTA TGTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
24068478 CGATCATTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (4 bp):
TTTA
Done.