Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 89 of 345
Found at i:24374683 original size:31 final size:31
Alignment explanation
Indices: 24374620--24374680 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
24374610 GATCGCGATA
* * * *
24374620 ATTTTAAATTTATTCTGTTAATTTTTACTTT
1 ATTTTAAAATTATTCTATAAATATTTACTTT
24374651 ATTTTAAAATTATTCTATAAATATTT-CTTT
1 ATTTTAAAATTATTCTATAAATATTTACTTT
24374681 TATAATGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.61
Consensus pattern (31 bp):
ATTTTAAAATTATTCTATAAATATTTACTTT
Found at i:24375843 original size:108 final size:102
Alignment explanation
Indices: 24375685--24375945 Score: 296
Period size: 104 Copynumber: 2.5 Consensus size: 102
24375675 ATATAAGGTT
* * *
24375685 TGGTGCCAGCCATTAGA-AGGCCAAAACCAGAAAAAAATTTTGAATTTTTTTTT-TG-TATTGGT
1 TGGTGCCTGCCATT-GACAGGCCAACACC---AAAAAA-TTTGAATTTTTTTTTATGCTAGT-GT
24375747 GCAGGCCATTAGAAGGCCAAAACAAAAAAAAAAATTAAAAACTCGTACC
60 -C-GGCCATTAGAAGGCCAAAAC---AAAAAAAATT-AAAACTCGTACC
*
24375796 TGGTG-CTGGCCATTGACAGGCCAACACCAAGAATATTTGAATTTTTTTTTCATGCTAGTGTCGG
1 TGGTGCCT-GCCATTGACAGGCCAACACCAA-AAAATTTGAATTTTTTTTT-ATGCTAGTGTCGG
*
24375860 CCATTAGAAGGCCAAAACAAAAAAAATTAAATCTCGTACC
63 CCATTAGAAGGCCAAAACAAAAAAAATTAAAACTCGTACC
* *
24375900 TGGTGCCTGCCATTGACAGGCCAGCACCAAAAAATTTAAATTTTTT
1 TGGTGCCTGCCATTGACAGGCCAACACCAAAAAATTTGAATTTTTT
24375946 GTAGGCCATT
Statistics
Matches: 135, Mismatches: 8, Indels: 22
0.82 0.05 0.13
Matches are distributed among these distances:
103 14 0.10
104 37 0.27
105 12 0.09
108 37 0.27
109 4 0.03
110 7 0.05
111 24 0.18
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (102 bp):
TGGTGCCTGCCATTGACAGGCCAACACCAAAAAATTTGAATTTTTTTTTATGCTAGTGTCGGCCA
TTAGAAGGCCAAAACAAAAAAAATTAAAACTCGTACC
Found at i:24375921 original size:104 final size:105
Alignment explanation
Indices: 24375750--24375945 Score: 299
Period size: 104 Copynumber: 1.9 Consensus size: 105
24375740 TATTGGTGCA
24375750 GGCCATTAGAAGGCCAAAACAAAAAAAAAAATTAAAAACTCGTACCTGGTGCTGGCCATTGACAG
1 GGCCATTAGAAGGCCAAAAC--AAAAAAAAATTAAAAACTCGTACCTGGTGCTGGCCATTGACAG
* *
24375815 GCCAACACCAAGAATATTTGAATTTTTTTTTCATGCTAGTGTC
64 GCCAACACCAA-AAAATTTAAATTTTTTTTTCATGCTAGTGTC
*
24375858 GGCCATTAGAAGGCCAAAAC-AAAAAAAATT-AAATCTCGTACCTGGTGCCT-GCCATTGACAGG
1 GGCCATTAGAAGGCCAAAACAAAAAAAAATTAAAAACTCGTACCTGGTG-CTGGCCATTGACAGG
*
24375920 CCAGCACCAAAAAATTTAAATTTTTT
65 CCAACACCAAAAAATTTAAATTTTTT
24375946 GTAGGCCATT
Statistics
Matches: 83, Mismatches: 4, Indels: 7
0.88 0.04 0.07
Matches are distributed among these distances:
103 14 0.17
104 37 0.45
105 12 0.14
108 20 0.24
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (105 bp):
GGCCATTAGAAGGCCAAAACAAAAAAAAATTAAAAACTCGTACCTGGTGCTGGCCATTGACAGGC
CAACACCAAAAAATTTAAATTTTTTTTTCATGCTAGTGTC
Found at i:24375967 original size:42 final size:43
Alignment explanation
Indices: 24375908--24375988 Score: 128
Period size: 42 Copynumber: 1.9 Consensus size: 43
24375898 CCTGGTGCCT
*
24375908 GCCATTGACAGGCCAGCACCAAAAAA-TTTAAATTTTTTGTAG
1 GCCATTGACAAGCCAGCACCAAAAAAGTTTAAATTTTTTGTAG
* *
24375950 GCCATTGACAAGCCAGCACTAAAAAAGTTTGAATTTTTT
1 GCCATTGACAAGCCAGCACCAAAAAAGTTTAAATTTTTT
24375989 TTCGTACTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 24 0.69
43 11 0.31
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (43 bp):
GCCATTGACAAGCCAGCACCAAAAAAGTTTAAATTTTTTGTAG
Found at i:24376076 original size:154 final size:146
Alignment explanation
Indices: 24375803--24376084 Score: 370
Period size: 145 Copynumber: 1.9 Consensus size: 146
24375793 ACCTGGTGCT
* * * * *
24375803 GGCCATTGACAGGCCAACACCAAGAATATTTGAATTTTTTTTTCATGCTAGTGTCGGCCATTAGA
1 GGCCATTGACAAGCCAACACCAAGAAAATTTGAATTTTTTTTTCATACTAGTGCCAGCCATTAGA
*
24375868 AGGCCAAAACAAAAAAAATTAAATCTCGTACCTGGTGCCTGCCATTGACAGGCCAGCACCAAAAA
66 AGGCCAAAACAAAAAAAATTAAATCTCGTACCTGGTGCCAGCCATTGACAGGCCAGCACCAAAAA
24375933 ATTTAAATTTTTTGTA
131 ATTTAAATTTTTTGTA
* * * *
24375949 GGCCATTGACAAGCCAGCACTAA-AAAAGTTTGAA-TTTTTTTTCGTACTGGTGCCAGCCATTAG
1 GGCCATTGACAAGCCAACACCAAGAAAA-TTTGAATTTTTTTTTCATACTAGTGCCAGCCATTAG
24376012 AAGGCCAAAACAAAAAAAAAATTATTTTTAAATACTCGTACCTGGTGCCAGCCATTGACAGGCCA
65 AAGGCCAAAAC---AAAAAAA--A---TTAAAT-CTCGTACCTGGTGCCAGCCATTGACAGGCCA
24376077 GCACCAAA
121 GCACCAAA
24376085 TTTTTTTTTA
Statistics
Matches: 116, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
145 38 0.33
146 26 0.22
148 7 0.06
150 1 0.01
153 6 0.05
154 38 0.33
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (146 bp):
GGCCATTGACAAGCCAACACCAAGAAAATTTGAATTTTTTTTTCATACTAGTGCCAGCCATTAGA
AGGCCAAAACAAAAAAAATTAAATCTCGTACCTGGTGCCAGCCATTGACAGGCCAGCACCAAAAA
ATTTAAATTTTTTGTA
Found at i:24376635 original size:18 final size:19
Alignment explanation
Indices: 24376604--24376642 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
24376594 AACTTTTATT
**
24376604 AATTTAAATTTTTAAA-AA
1 AATTTAAAAATTTAAATAA
24376622 AATTTAAAAATTTAAATAA
1 AATTTAAAAATTTAAATAA
24376641 AA
1 AA
24376643 AAAATCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTTAAAAATTTAAATAA
Found at i:24387525 original size:23 final size:23
Alignment explanation
Indices: 24387494--24387549 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
24387484 TAAAAAAATA
*
24387494 TAAACTATTTTTTATTTTAAATTT
1 TAAATTATTTTTT-TTTTAAATTT
* * *
24387518 T-GATTATTATTTTTTTAATTTT
1 TAAATTATTTTTTTTTTAAATTT
24387540 TAAATTATTT
1 TAAATTATTT
24387550 ATCGACGTGA
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
22 10 0.40
23 14 0.56
24 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (23 bp):
TAAATTATTTTTTTTTTAAATTT
Found at i:24387853 original size:2 final size:2
Alignment explanation
Indices: 24387841--24387883 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
24387831 AGTATTAAAG
* * *
24387841 TA TA CA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24387883 T
1 T
24387884 TATGAAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:24390993 original size:16 final size:16
Alignment explanation
Indices: 24390972--24391002 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
24390962 CCTCTAACCG
24390972 AAATAAATTCAATCAC
1 AAATAAATTCAATCAC
24390988 AAATAAATTCAATCA
1 AAATAAATTCAATCA
24391003 ATTAATTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATAAATTCAATCAC
Found at i:24391846 original size:47 final size:47
Alignment explanation
Indices: 24391777--24391872 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
24391767 AACAATGGGT
24391777 TCAACAAACATTTGATCTCTCGGTTAGCCAATAACAATATCAAATAC
1 TCAACAAACATTTGATCTCTCGGTTAGCCAATAACAATATCAAATAC
24391824 TCAACAAACATTTGATCTCTCGGTTAGCCAATAACAATATCAAATAC
1 TCAACAAACATTTGATCTCTCGGTTAGCCAATAACAATATCAAATAC
24391871 TC
1 TC
24391873 TTACAAGGTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (47 bp):
TCAACAAACATTTGATCTCTCGGTTAGCCAATAACAATATCAAATAC
Found at i:24396018 original size:20 final size:22
Alignment explanation
Indices: 24395993--24396043 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
24395983 AAGGGCCCTT
24395993 TATTAAAT-T-ACTCATTATAC
1 TATTAAATATCACTCATTATAC
*
24396013 TATTAAATGAATCAGTCATTATAC
1 TATTAAAT--ATCACTCATTATAC
24396037 TATTAAA
1 TATTAAA
24396044 AAGAATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 8 0.31
23 1 0.04
24 17 0.65
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.41
Consensus pattern (22 bp):
TATTAAATATCACTCATTATAC
Found at i:24396757 original size:21 final size:24
Alignment explanation
Indices: 24396728--24396781 Score: 78
Period size: 21 Copynumber: 2.4 Consensus size: 24
24396718 ATTTAATTGA
*
24396728 TTTATGGTTAGTGTTTT-T-AA-G
1 TTTAGGGTTAGTGTTTTGTAAAGG
24396749 TTTAGGGTTAGTGTTTTGTAAAGG
1 TTTAGGGTTAGTGTTTTGTAAAGG
24396773 TTTAGGGTT
1 TTTAGGGTT
24396782 TTAGAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 16 0.55
22 1 0.03
23 2 0.07
24 10 0.34
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (24 bp):
TTTAGGGTTAGTGTTTTGTAAAGG
Found at i:24397467 original size:126 final size:126
Alignment explanation
Indices: 24397241--24397620 Score: 618
Period size: 126 Copynumber: 3.0 Consensus size: 126
24397231 TTTTGTAAGT
*
24397241 ATAATTCTGAGCAGACGTTTCTAGAA-AAATAGTGTCAGAAAACGCTTCAAGCAGGATGCACTGT
1 ATAATTCTGAGTAGACGTTTCT-GAACAAATAGTG-CAGAAAACGCTTCAAGCAGGATGCACTGT
*
24397305 CAGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTGGAAAA
64 CAGTAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTGGAAAA
* * *
24397368 ATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTTA
1 ATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCAGAAAACGCTTCAAGCAGGATGCACTGTCA
*
24397433 GTAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATGGAAAA
66 GTAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTGGAAAA
* * *
24397494 ATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCTGAAAACGCTTCAAGCAGGATGCAATGTCA
1 ATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCAGAAAACGCTTCAAGCAGGATGCACTGTCA
* * * *
24397559 GTAAAATTTCTGGAAAAAGCTCTCATGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAAA
66 GTAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTGGAAAA
24397620 A
1 A
24397621 CGAGGCTGTA
Statistics
Matches: 236, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
126 207 0.88
127 29 0.12
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (126 bp):
ATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCAGAAAACGCTTCAAGCAGGATGCACTGTCA
GTAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTGGAAAA
Found at i:24401135 original size:17 final size:18
Alignment explanation
Indices: 24401110--24401151 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
24401100 GACTAGGAAA
* *
24401110 AGGAAACATATAA-GGTT
1 AGGATACATATAAGGGCT
24401127 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
24401145 AGGATAC
1 AGGATAC
24401152 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.43, C:0.10, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:24404088 original size:91 final size:90
Alignment explanation
Indices: 24403933--24404214 Score: 293
Period size: 91 Copynumber: 3.1 Consensus size: 90
24403923 ATAATGTCAC
* * * * *
24403933 ATTTGGTACCTATACTTTCATAAAATATCCAATGTGGTA-TATGTACCTT-AAAAGTGTCTAATG
1 ATTTGGTACATGTACTTTCAT-AAATGTCCAATGTGGTACT-TGTACTTTGAAAA-TGTCCAATG
*
24403996 TGGTACTTGAACCATCAATTTGTGTATT
63 TGGTACTTGAACTATCAATTTGTGTATT
*
24404024 ATTTGGTACATGTACTTTCATAACATGTCTAATGTGGTACTTGTACTTTGAAAATGTCCAATGTG
1 ATTTGGTACATGTACTTTCATAA-ATGTCCAATGTGGTACTTGTACTTTGAAAATGTCCAATGTG
* *
24404089 GTACTTAAACTATCAGTTTGTGTATT
65 GTACTTGAACTATCAATTTGTGTATT
* * ** * * * *
24404115 ATTTAAGGT--TTGTACTTTCATGAAATGCCCAACATGATACTTATACTTTGAAAATATTCAATG
1 ATTT--GGTACATGTACTTTCAT-AAATGTCCAATGTGGTACTTGTACTTTGAAAATGTCCAATG
* *
24404178 TGGTACTCGAACTATCAATCTGTGTATT
63 TGGTACTTGAACTATCAATTTGTGTATT
24404206 ATTATGGTA
1 ATT-TGGTA
24404215 TTTGGAGTTA
Statistics
Matches: 161, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
90 5 0.03
91 145 0.90
92 8 0.05
93 3 0.02
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (90 bp):
ATTTGGTACATGTACTTTCATAAATGTCCAATGTGGTACTTGTACTTTGAAAATGTCCAATGTGG
TACTTGAACTATCAATTTGTGTATT
Found at i:24404090 original size:29 final size:31
Alignment explanation
Indices: 24404027--24404094 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 31
24404017 GTGTATTATT
* *
24404027 TGGTACATGTACTTTCATAACATGTCTAATG
1 TGGTACTTGTACTTTCATAACATGTCCAATG
*
24404058 TGGTACTTGTACTTTGA-AA-ATGTCCAATG
1 TGGTACTTGTACTTTCATAACATGTCCAATG
24404087 TGGTACTT
1 TGGTACTT
24404095 AAACTATCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 17 0.50
30 2 0.06
31 15 0.44
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (31 bp):
TGGTACTTGTACTTTCATAACATGTCCAATG
Found at i:24405407 original size:20 final size:20
Alignment explanation
Indices: 24405384--24405434 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
24405374 TTTGAACCAT
* *
24405384 AAACCTTAAATACCAAACCC
1 AAACCTCAAACACCAAACCC
*
24405404 AAACAC-CAAACATCAAACCC
1 AAAC-CTCAAACACCAAACCC
*
24405424 AAACCTGAAAC
1 AAACCTCAAAC
24405435 TCCCTTTGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.53, C:0.35, G:0.02, T:0.10
Consensus pattern (20 bp):
AAACCTCAAACACCAAACCC
Found at i:24406598 original size:21 final size:20
Alignment explanation
Indices: 24406570--24406608 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
24406560 CAATTATCAT
* *
24406570 TTTAATTTTTTTATATTTAG
1 TTTAATTTTATAATATTTAG
24406590 TTTAGATTTTATAATATTT
1 TTTA-ATTTTATAATATTT
24406609 TTAAATTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTAATTTTATAATATTTAG
Found at i:24406627 original size:18 final size:17
Alignment explanation
Indices: 24406597--24406649 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
24406587 TAGTTTAGAT
24406597 TTTATAATA-TTTTTAAA
1 TTTATAA-ACTTTTTAAA
*
24406614 TTTCTATAACTTTTTAAA
1 TTTATA-AACTTTTTAAA
* *
24406632 ATTATAAATTTTTTAAA
1 TTTATAAACTTTTTAAA
24406649 T
1 T
24406650 ACTTTGAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 16 0.55
18 13 0.45
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTATAAACTTTTTAAA
Found at i:24406643 original size:16 final size:16
Alignment explanation
Indices: 24406598--24406649 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
24406588 AGTTTAGATT
*
24406598 TTATAATATTTTTAAATT
1 TTATAA-ATTTTTAAA-A
*
24406616 TCTATAACTTTTTAAAA
1 T-TATAAATTTTTAAAA
*
24406633 TTATAAATTTTTTAAA
1 TTATAAATTTTTAAAA
24406649 T
1 T
24406650 ACTTTGAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 14 0.48
17 1 0.03
18 9 0.31
19 5 0.17
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATAAATTTTTAAAA
Found at i:24408421 original size:12 final size:12
Alignment explanation
Indices: 24408404--24408443 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
24408394 GTGAGAGGAA
24408404 AGAAAAT-AGAAG
1 AGAAAATGAG-AG
24408416 AGAAAATGAGAG
1 AGAAAATGAGAG
*
24408428 AGAAAATGAGGG
1 AGAAAATGAGAG
24408440 AGAA
1 AGAA
24408444 GTGTATGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 24 0.92
13 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.33, T:0.07
Consensus pattern (12 bp):
AGAAAATGAGAG
Found at i:24412441 original size:33 final size:35
Alignment explanation
Indices: 24412403--24412499 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
24412393 ATTGTTATAT
24412403 TTAAATATTTAAAATATATTTTATATATT-C-TAA
1 TTAAATATTTAAAATATATTTTATATATTGCTTAA
* *
24412436 TTAAAT-TTTATAAATA-ATTAATATTTATTGCTTAA
1 TTAAATATTTA-AAATATATT-TTATATATTGCTTAA
*
24412471 --AAATATTTAAAATTTATATTTCATATATT
1 TTAAATATTTAAAA--TATATTTTATATATT
24412500 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
32 7 0.14
33 25 0.49
34 5 0.10
35 11 0.22
36 3 0.06
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (35 bp):
TTAAATATTTAAAATATATTTTATATATTGCTTAA
Found at i:24417854 original size:46 final size:46
Alignment explanation
Indices: 24417784--24418011 Score: 359
Period size: 46 Copynumber: 5.0 Consensus size: 46
24417774 TTTGACATGA
* * * * * *
24417784 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
***
24417830 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
24417876 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
24417922 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
24417968 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
24418012 AGAGCACACT
Statistics
Matches: 171, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 167 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:24421930 original size:18 final size:18
Alignment explanation
Indices: 24421894--24421927 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24421884 TTCTATAATA
*
24421894 TCAATTCATATCATCAAT
1 TCAATTCATAACATCAAT
24421912 TCAATTCA-AACATCAA
1 TCAATTCATAACATCAA
24421928 ATTTCCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (18 bp):
TCAATTCATAACATCAAT
Found at i:24426962 original size:32 final size:32
Alignment explanation
Indices: 24426926--24426989 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
24426916 CTTTCAGAGT
* *
24426926 TAGCATCTGCCAACTTCACTTTATTGTTCTGA
1 TAGCATCTACCAACTTCACTTTATCGTTCTGA
*
24426958 TAGCATCTATCAACTTCACTTTATCGTTCTGA
1 TAGCATCTACCAACTTCACTTTATCGTTCTGA
24426990 CTAGTATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (32 bp):
TAGCATCTACCAACTTCACTTTATCGTTCTGA
Found at i:24432413 original size:43 final size:44
Alignment explanation
Indices: 24432352--24432444 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
24432342 TCCTAATTGG
24432352 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
24432395 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
24432439 -AAAATA
1 GAAAATA
24432445 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:24432488 original size:19 final size:18
Alignment explanation
Indices: 24432466--24432505 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
24432456 TGAATAAAAC
*
24432466 TTATCTATCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
24432485 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
24432503 TTA
1 TTA
24432506 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:24437142 original size:43 final size:44
Alignment explanation
Indices: 24437081--24437173 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
24437071 TCCTAATTGG
24437081 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
24437124 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
24437168 -AAAATA
1 GAAAATA
24437174 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:24438691 original size:15 final size:14
Alignment explanation
Indices: 24438658--24438688 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
24438648 GAAATTTCTC
24438658 TTTCTGATAATGAT
1 TTTCTGATAATGAT
24438672 TTTCTGATAATGAT
1 TTTCTGATAATGAT
24438686 TTT
1 TTT
24438689 TCTACTTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.55
Consensus pattern (14 bp):
TTTCTGATAATGAT
Found at i:24441113 original size:2 final size:2
Alignment explanation
Indices: 24441106--24441147 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
24441096 AACTAGCATA
24441106 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24441148 GTATTGGCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24443766 original size:26 final size:26
Alignment explanation
Indices: 24443727--24443834 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
24443717 TGATACAAAT
*
24443727 TGATAACGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
24443753 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24443779 TGATAATGGGTTAGGTATATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24443805 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24443831 TGAT
1 TGAT
24443835 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24445349 original size:26 final size:26
Alignment explanation
Indices: 24445320--24445372 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24445310 TTTACAGTTT
*
24445320 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
24445346 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
24445372 T
1 T
24445373 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:24450672 original size:22 final size:22
Alignment explanation
Indices: 24450618--24450673 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
24450608 TAGTAACAAT
* *
24450618 ATAATAGTAAAATGACAGTAAA
1 ATAATAGTGAAATGACAGCAAA
*
24450640 ATAATAGTGAAATGACTGCAAA
1 ATAATAGTGAAATGACAGCAAA
*
24450662 ATAATAATGAAA
1 ATAATAGTGAAA
24450674 CAACTGATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.57, C:0.05, G:0.14, T:0.23
Consensus pattern (22 bp):
ATAATAGTGAAATGACAGCAAA
Found at i:24450679 original size:22 final size:22
Alignment explanation
Indices: 24450637--24450679 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
24450627 AAATGACAGT
* **
24450637 AAAATAATAGTGAAATGACTGC
1 AAAATAATAATGAAACAACTGC
24450659 AAAATAATAATGAAACAACTG
1 AAAATAATAATGAAACAACTG
24450680 ATTTAGACTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
AAAATAATAATGAAACAACTGC
Found at i:24452455 original size:11 final size:11
Alignment explanation
Indices: 24452431--24452488 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
24452421 TATCAAAATA
24452431 AAAATAATTAAC
1 AAAATAA-TAAC
*
24452443 AATATAATAAC
1 AAAATAATAAC
* *
24452454 AAAATGACAAC
1 AAAATAATAAC
*
24452465 -AAA-CATAAC
1 AAAATAATAAC
24452474 AAAATAATAAC
1 AAAATAATAAC
24452485 AAAA
1 AAAA
24452489 CAGCAGTAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
9 4 0.11
10 6 0.16
11 21 0.57
12 6 0.16
ACGTcount: A:0.69, C:0.12, G:0.02, T:0.17
Consensus pattern (11 bp):
AAAATAATAAC
Found at i:24452485 original size:20 final size:20
Alignment explanation
Indices: 24452449--24452487 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
24452439 TAACAATATA
*
24452449 ATAACAAAATGACAACAAAC
1 ATAACAAAATAACAACAAAC
*
24452469 ATAACAAAATAATAACAAA
1 ATAACAAAATAACAACAAA
24452488 ACAGCAGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.69, C:0.15, G:0.03, T:0.13
Consensus pattern (20 bp):
ATAACAAAATAACAACAAAC
Found at i:24452787 original size:11 final size:11
Alignment explanation
Indices: 24452771--24452796 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24452761 GATAGGTAGC
24452771 ATAACTAAACT
1 ATAACTAAACT
24452782 ATAACTAAACT
1 ATAACTAAACT
24452793 ATAA
1 ATAA
24452797 ATATTTAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (11 bp):
ATAACTAAACT
Found at i:24453533 original size:2 final size:2
Alignment explanation
Indices: 24453526--24453558 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
24453516 ACTGCCTTAT
24453526 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24453559 TATTGTTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24457623 original size:18 final size:18
Alignment explanation
Indices: 24457602--24457641 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
24457592 AATAATAACC
24457602 ATTACATTCCTAATCATA
1 ATTACATTCCTAATCATA
**
24457620 ATTAGTTTCCTAATCATA
1 ATTACATTCCTAATCATA
24457638 ATTA
1 ATTA
24457642 GTTTCAGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.17, G:0.03, T:0.42
Consensus pattern (18 bp):
ATTACATTCCTAATCATA
Found at i:24457642 original size:18 final size:18
Alignment explanation
Indices: 24457608--24457646 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
24457598 AACCATTACA
24457608 TTCCTAATCATAATTAGT
1 TTCCTAATCATAATTAGT
24457626 TTCCTAATCATAATTAGT
1 TTCCTAATCATAATTAGT
24457644 TTC
1 TTC
24457647 AGCATTTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.18, G:0.05, T:0.46
Consensus pattern (18 bp):
TTCCTAATCATAATTAGT
Found at i:24457683 original size:2 final size:2
Alignment explanation
Indices: 24457676--24457701 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24457666 TGGTTAGGTT
24457676 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
24457702 AACGAAACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24458764 original size:13 final size:14
Alignment explanation
Indices: 24458746--24458778 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
24458736 ACAACTTTCC
24458746 AAAAATTA-AAAAA
1 AAAAATTATAAAAA
*
24458759 AAAAATTATAAATA
1 AAAAATTATAAAAA
24458773 AAAAAT
1 AAAAAT
24458779 AGAAAGAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAATTATAAAAA
Found at i:24467930 original size:15 final size:15
Alignment explanation
Indices: 24467910--24467939 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24467900 CAGTTATCTT
*
24467910 AAGTACTTGACGAAG
1 AAGTACTTGAAGAAG
24467925 AAGTACTTGAAGAAG
1 AAGTACTTGAAGAAG
24467940 CACAATGTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.10, G:0.27, T:0.20
Consensus pattern (15 bp):
AAGTACTTGAAGAAG
Found at i:24471609 original size:29 final size:30
Alignment explanation
Indices: 24471567--24471626 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
24471557 TATAATTCAG
* *
24471567 TGTAATTTTGTATATAAAATTTT-ATTTTA
1 TGTAATTTTATATACAAAATTTTAATTTTA
24471596 TGTAATTTTATATACAAAATTTTAATTTTA
1 TGTAATTTTATATACAAAATTTTAATTTTA
24471626 T
1 T
24471627 CAAATTCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 21 0.75
30 7 0.25
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.57
Consensus pattern (30 bp):
TGTAATTTTATATACAAAATTTTAATTTTA
Found at i:24479014 original size:14 final size:14
Alignment explanation
Indices: 24478995--24479022 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24478985 ATATACCATC
24478995 AACTTAACATAATA
1 AACTTAACATAATA
24479009 AACTTAACATAATA
1 AACTTAACATAATA
24479023 GGGTAATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (14 bp):
AACTTAACATAATA
Found at i:24480304 original size:17 final size:16
Alignment explanation
Indices: 24480278--24480311 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
24480268 AAATATTTAA
*
24480278 TTAAATTTTTAATATT
1 TTAAATTTTTAAAATT
24480294 TTAATATTTTTAAAATT
1 TTAA-ATTTTTAAAATT
24480311 T
1 T
24480312 AAAAAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTAAATTTTTAAAATT
Found at i:24481533 original size:39 final size:40
Alignment explanation
Indices: 24481490--24481568 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
24481480 GGGTTCATTT
*
24481490 AATTTCAAAATT-TTTTACAAATTGTTTTGTTTGTTATTC
1 AATTTCAAAATTCTTTTACAAACTGTTTTGTTTGTTATTC
*
24481529 AATTTCAAAATTCTTTTATAAACTGTTTTGTTTGTTATTC
1 AATTTCAAAATTCTTTTACAAACTGTTTTGTTTGTTATTC
24481569 TATTATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
39 12 0.32
40 25 0.68
ACGTcount: A:0.28, C:0.09, G:0.08, T:0.56
Consensus pattern (40 bp):
AATTTCAAAATTCTTTTACAAACTGTTTTGTTTGTTATTC
Found at i:24481767 original size:3 final size:3
Alignment explanation
Indices: 24481759--24481820 Score: 72
Period size: 3 Copynumber: 20.3 Consensus size: 3
24481749 TAGATTTCAA
** *
24481759 TAT TAT TAT TAT TACT GGT TGT TACT TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TA-T TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
24481805 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
24481821 CCATAAATTA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
2 2 0.04
3 46 0.88
4 4 0.08
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:24485689 original size:131 final size:131
Alignment explanation
Indices: 24485384--24486159 Score: 1040
Period size: 131 Copynumber: 5.9 Consensus size: 131
24485374 GCCAACATAC
* * * * * *
24485384 GCTTTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGTCTAAAGCAACGCTTAAATAAGAGT
1 GCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
* * * * *
24485449 TG-GTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGAATATACT
66 TGCAT-TTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACT
*
24485513 AC
130 AT
* * * *
24485515 GCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTATGGCAACACTTGAATAAGAGT
1 GCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
* *
24485580 TAGCATTTGTGTAGTCATAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGGGATAAACT
66 T-GCATTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACT
24485645 AT
130 AT
* *
24485647 GCTTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTATGACAACGCTTGAATAAGAGT
1 GCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
* *
24485711 TAGCATTTGTGTAGTCATAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGGGATAAACT
66 T-GCATTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACT
24485776 AT
130 AT
* *
24485778 GCTTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGT
1 GCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
* * * *
24485842 TGGAGTTTGTGTAGTCCTAAGATGACACTTTTGTGGCGACACTTTCCTAAGTGTT-GCATAGACT
66 TGCA-TTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACT
24485906 ACT
130 A-T
* * * *
24485909 -CTTTCGTCAACTCTTTATATAAGGGTTGGGATATGTATGCCTAAGGCAATGCTTGAATAAGAGT
1 GCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
** * *
24485973 TGGTTTTTGTGTAGTCCTAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCGATAAACT
66 T-GCATTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACT
**
24486038 GC
130 AT
**
24486040 GCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGAGT
1 GCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
* * * * * *
24486105 TGGCTTTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGGCACTTTCCTAAGTGTT
66 T-GCATTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTT
24486160 CAGATAGACT
Statistics
Matches: 578, Mismatches: 59, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
130 14 0.02
131 390 0.67
132 173 0.30
133 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (131 bp):
GCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
TGCATTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTA
T
Found at i:24485797 original size:262 final size:261
Alignment explanation
Indices: 24485246--24486159 Score: 1131
Period size: 262 Copynumber: 3.5 Consensus size: 261
24485236 CAACATACAT
* * * * *
24485246 TTTCGGCAACTTTTTGTATAAGGGTTGCGGTATGCATGCCTAAAGCAACGCTTAAATAAGAGTTG
1 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTG
* * *
24485311 GC-TTTGTCTAGTCCTAAGACGACA-TTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTG
66 GCATTTGTCTAGTCCTAAGACGACACTTT-TGTGGCGACACTTTCCTAAGTGTTG-G---GA-T-
* * * * * *
24485374 GCCAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGTCTAAAGCAACGCTT
124 --AAAC-TATGCTTTCGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAGA-CAACGCTT
* * * **
24485439 AAATAAGAGTTGGTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTG
185 GAATAAGAGTTGAT-TTGTGTAGTCCTAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTG
* *
24485504 GAATATACTACGC
249 GGATAAACTACGC
* * * * *
24485517 TTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTATGGCAACACTTGAATAAGAGTTA
1 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTG
* * *
24485582 GCATTTGTGTAGTCATAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGGGATAAACTAT
66 GCATTTGTCTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTAT
*
24485647 GCTTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTATGACAACGCTTGAATAAGAGT
131 GCTTTCGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTA-GACAACGCTTGAATAAGAGT
*
24485711 TAGCATTTGTGTAGTCATAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGGGATAAACT
195 T-G-ATTTGTGTAGTCCTAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGGGATAAACT
*
24485776 ATGC
258 ACGC
* *
24485780 TTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGTTG
1 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTG
* * * *
24485844 G-AGTTTGTGTAGTCCTAAGATGACACTTTTGTGGCGACACTTTCCTAAGTGTT-GCATAGACTA
66 GCA-TTTGTCTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTA
* * * *
24485907 CT-CTTTCGTCAACTCTTTATATAAGGGTTGGGATATGTATGCCTAAGGCAATGCTTGAATAAGA
130 -TGCTTTCGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCT-AGACAACGCTTGAATAAGA
* *
24485971 GTTGGTTTTTGTGTAGTCCTAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCGATAAA
193 GTT-G-ATTTGTGTAGTCCTAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGGGATAAA
*
24486036 CTGCGC
256 CTACGC
**
24486042 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGAGTTG
1 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTG
* * * * *
24486107 GCTTTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGGCACTTTCCTAAGTGTT
66 GCATTTGTCTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTT
24486160 CAGATAGACT
Statistics
Matches: 567, Mismatches: 65, Indels: 30
0.86 0.10 0.05
Matches are distributed among these distances:
261 13 0.02
262 273 0.48
263 171 0.30
264 4 0.01
267 1 0.00
268 2 0.00
271 59 0.10
272 41 0.07
273 3 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (261 bp):
TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTG
GCATTTGTCTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTAT
GCTTTCGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAGACAACGCTTGAATAAGAGTT
GATTTGTGTAGTCCTAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGGGATAAACTACG
C
Found at i:24485984 original size:393 final size:397
Alignment explanation
Indices: 24485246--24486159 Score: 1214
Period size: 393 Copynumber: 2.3 Consensus size: 397
24485236 CAACATACAT
* * * * *
24485246 TTTCGGCAACTTTTTGTATAAGGGTTGCGGTATGCATGCCTAAAGCAACGCTTAAATAAGAGTTG
1 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAGA-CAACGCTTGAATAAGAGTTG
* *
24485311 GCTTTGTCTAGTCCTAAGACGACATTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTGGC
65 GCTTTGTCTAGTCCTAAGACGACATTT-TGAGGCGACACTTTCCTAAGTGTTGCG--AGACT-G-
* * *
24485376 CAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGTCTAAAGCAACGCTTAA
125 AAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATAAGCATGCCTAAAGCAACGCTTAA
*
24485441 ATAAGAGTTGGTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGA
190 ATAAGAGTTGGAGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGA
* * *
24485506 ATATACTACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTATGGCAACACTTG
255 ATAGACTACGCTTTCGCCAACTATTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTG
24485571 AATAAGAGTTAGCATTTGTGTAGTCATAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTG
320 AATAAGAGTTAGCATTTGTGTAGTCATAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTG
* *
24485636 GGATAAACTATGC
385 CGATAAACTACGC
*
24485649 TTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTATGACAACGCTTGAATAAGAGTTA
1 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTA-GACAACGCTTGAATAAGAGTTG
* * * *
24485713 GCATTTGTGTAGTCATAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTG-G-GA-T-AAA
65 GC-TTTGTCTAGTCCTAAGACGACA-TTTTGAGGCGACACTTTCCTAAGTGTTGCGAGACTGAAA
* * * ** **
24485774 C-TATGCTTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATA
128 CATACGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATAAGCATGCCTAAAGCAACGCTTAAATA
* * * *
24485837 AGAGTTGGAGTTTGTGTAGTCCTAAGATGACACTTTTGTGGCGACACTTTCCTAAGTGTT-GCAT
193 AGAGTTGGAG-TTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGAAT
* * * * **
24485901 AGACTACTCTTTCGTCAACTCTTTATATAAGGGTTGGGATATGTATGCCTAAGGCAATGCTTGAA
257 AGACTACGCTTTCGCCAACTATTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTGAA
* ** *
24485966 TAAGAGTTGGTTTTTGTGTAGTCCTAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCG
322 TAAGAGTTAGCATTTGTGTAGTCATAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCG
*
24486031 ATAAACTGCGC
387 ATAAACTACGC
* **
24486042 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGAGTTG
1 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCT-AGACAACGCTTGAATAAGAGTTG
* * *
24486107 GCTTTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGGCACTTTCCTAAGTGTT
65 GC-TTTGTCTAGTCCTAAGACGACA-TTTTGAGGCGACACTTTCCTAAGTGTT
24486160 CAGATAGACT
Statistics
Matches: 450, Mismatches: 55, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
393 186 0.41
394 153 0.34
395 4 0.01
398 1 0.00
399 2 0.00
402 56 0.12
403 45 0.10
404 3 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (397 bp):
TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAGACAACGCTTGAATAAGAGTTGG
CTTTGTCTAGTCCTAAGACGACATTTTGAGGCGACACTTTCCTAAGTGTTGCGAGACTGAAACAT
ACGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATAAGCATGCCTAAAGCAACGCTTAAATAAGA
GTTGGAGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGAATAGAC
TACGCTTTCGCCAACTATTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTGAATAAG
AGTTAGCATTTGTGTAGTCATAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCGATAA
ACTACGC
Found at i:24486451 original size:22 final size:21
Alignment explanation
Indices: 24486406--24486466 Score: 77
Period size: 22 Copynumber: 2.9 Consensus size: 21
24486396 TCAATTTAGG
*
24486406 TTAGGGTTTAAGGTTTAGTGT
1 TTAGAGTTTAAGGTTTAGTGT
* *
24486427 TTAGAGTTTAAGATTTTAGTTT
1 TTAGAGTTTAAG-GTTTAGTGT
*
24486449 TTAGAGTTTAGGGTTTAG
1 TTAGAGTTTAAGGTTTAG
24486467 GGGTTTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (21 bp):
TTAGAGTTTAAGGTTTAGTGT
Found at i:24487098 original size:8 final size:8
Alignment explanation
Indices: 24487048--24487098 Score: 50
Period size: 9 Copynumber: 5.9 Consensus size: 8
24487038 TTTATATGTT
24487048 AATTTAAA
1 AATTTAAA
24487056 AATTATAAA
1 AATT-TAAA
24487065 AATCTTCAAAA
1 AAT-TT--AAA
24487076 ATATTTAAA
1 A-ATTTAAA
24487085 AA-TTAAA
1 AATTTAAA
24487092 AATTTAA
1 AATTTAA
24487099 TATTTTAGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
7 7 0.19
8 9 0.24
9 12 0.32
10 1 0.03
11 6 0.16
12 2 0.05
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTTAAA
Found at i:24487854 original size:35 final size:34
Alignment explanation
Indices: 24487783--24487915 Score: 149
Period size: 35 Copynumber: 3.8 Consensus size: 34
24487773 GCAAACCTAT
* *
24487783 TGCATCTGCCGTCCACTGCCTGCCCAGCCACTGG
1 TGCATCTGCCGTCCACCGCCTGCCCAGCCACCGG
** *
24487817 TGCATCTGTTGTCCACCGCCTGCCCAAGCCACGGG
1 TGCATCTGCCGTCCACCGCCTGCCC-AGCCACCGG
* * * *
24487852 TGCATTTGCTGTCCACTGCCTGCCTTAGCCACCGG
1 TGCATCTGCCGTCCACCGCCTGCC-CAGCCACCGG
*
24487887 TGCATCTGCCGTCCACCACCTGCTCCAGC
1 TGCATCTGCCGTCCACCGCCTGC-CCAGC
24487916 TACTGGTAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
34 22 0.27
35 59 0.72
36 1 0.01
ACGTcount: A:0.13, C:0.42, G:0.23, T:0.23
Consensus pattern (34 bp):
TGCATCTGCCGTCCACCGCCTGCCCAGCCACCGG
Found at i:24496556 original size:18 final size:18
Alignment explanation
Indices: 24496499--24496556 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
24496489 GTTATTATTT
*
24496499 TAAAAATTGAATAGAATA
1 TAAAAATTCAATAGAATA
* * *
24496517 TAAAATATTCAA-ATATTT
1 TAAAA-ATTCAATAGAATA
*
24496535 TAAAAATTTAATAGAATA
1 TAAAAATTCAATAGAATA
24496553 TAAA
1 TAAA
24496557 TTTGATGTGC
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
17 5 0.17
18 20 0.67
19 5 0.17
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (18 bp):
TAAAAATTCAATAGAATA
Found at i:24500778 original size:37 final size:35
Alignment explanation
Indices: 24500457--24501105 Score: 193
Period size: 35 Copynumber: 17.9 Consensus size: 35
24500447 GAGACAAAGA
* * **
24500457 TCTATCCCAACCTTTTTAA-GTGTACCTTAGACGGG
1 TCTATCCCAACCTTTTTAAGGT-TGCCTTAAACAAG
* * * * **
24500492 TTTA-CCCTAACCATTTTAAGGTTGCTTTAGACGGG
1 TCTATCCC-AACCTTTTTAAGGTTGCCTTAAACAAG
* * *
24500527 TTTATCCCAACTTTTTTTAA-GTTGCCTTGGAAA-AGG
1 TCTATCCCAAC-CTTTTTAAGGTTGCCTT--AAACAAG
* * ***
24500563 TCTATCGCAACCTTTTTAGGGTTG-CTATAAATGGG
1 TCTATCCCAACCTTTTTAAGGTTGCCT-TAAACAAG
* ** * * * *
24500598 TCTATCGCAAAATTTTTAACGTTGTCTTAGACAGG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAAACAAG
* * * *
24500633 TCAATCGCAACCTTTTCTAAAAGTTTCCTTAAACAAG
1 TCTATCCCAACCTTTT-T-AAGGTTGCCTTAAACAAG
* * *
24500670 ATCTATCGCAACCTTTTTAGGGTTACCTTAAACGAA-
1 -TCTATCCCAACCTTTTTAAGGTTGCCTTAAAC-AAG
* *
24500706 TCTATCACCAACCTTTTTAAGGTTGCTTTAGACAAG
1 TCTATC-CCAACCTTTTTAAGGTTGCCTTAAACAAG
*
24500742 TCTATCCCAACCTTTTTTTAAGGTTGCCATAAACAAGG
1 TCTATCCCAACC--TTTTTAAGGTTGCCTTAAACAA-G
*** * * * * ** *
24500780 TCTATTGTAACATTTTTAAAATGTTTCCGTAGGCAGG
1 TCTATCCCAACCTTTTT--AAGGTTGCCTTAAACAAG
* * *
24500817 CCTATCGCAACCTTTTTTCAAGGTTGCCGTAAACAAG
1 TCTATCCCAACC-TTTTT-AAGGTTGCCTTAAACAAG
* * * *
24500854 -ATATACCACAACTTTTTTAAAAGGTTG-CTGTAGATAAGG
1 TCTAT-CC-CAACCTTTTT--AAGGTTGCCT-TAAACAA-G
* ** ** *
24500893 TTTATAGCAATTTTTATTAAGGGTTGCCGTAAACAAG
1 TCTATCCCAACCTTT-TTAA-GGTTGCCTTAAACAAG
* * ** *
24500930 GCT-TCTCGCAACCTTTTTAAGGTTGTCGAAAACAAA
1 TCTATC-C-CAACCTTTTTAAGGTTGCCTTAAACAAG
* * * *
24500966 TCTATACCAATCTTTTTAACGTTG-CTCTAAACGAG
1 TCTATCCCAACCTTTTTAAGGTTGCCT-TAAACAAG
* * * ***
24501001 TCTATCGCAACCATTTTTAACAGTTGTCTTAAATTGG
1 TCTATCCCAACC-TTTTTAA-GGTTGCCTTAAACAAG
* * * ** **
24501038 TCTATCGCAACCCTTTTATGGTTGTATTAAACGGG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAAACAAG
*
24501073 TCTATCGCAACCTTTTTCAAAGGTTGCCCTTAA
1 TCTATCCCAACCTTTTT--AAGGTTG-CCTTAA
24501106 CTAGGTCTAC
Statistics
Matches: 464, Mismatches: 109, Indels: 79
0.71 0.17 0.12
Matches are distributed among these distances:
34 7 0.02
35 157 0.34
36 106 0.23
37 102 0.22
38 85 0.18
39 4 0.01
40 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (35 bp):
TCTATCCCAACCTTTTTAAGGTTGCCTTAAACAAG
Found at i:24500797 original size:109 final size:107
Alignment explanation
Indices: 24500500--24500784 Score: 308
Period size: 109 Copynumber: 2.6 Consensus size: 107
24500490 GGTTTACCCT
* * * *
24500500 AACCATTTTAAGGTTGCTTTAGACGGGTTTATCCCAA-CTTTTTTTAAGTTGCCTTGGAA-AAGG
1 AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAAGTTGCCTT-AAACAAGG
* * ** *
24500563 TCTATCGCAACCTTTTTAGGGTTGCTATAAATGGGTCTATCGC
65 TCTATCGCAACCTTTTTAGGGTTCCTATAAACGAATCTATCCC
** * * * ** *
24500606 AAAATTTTTAACGTTG-TCTTAGACAGGTCAATCGCAACCTTTTCTAAAAGTTTCCTTAAACAAG
1 AACCTTTTTAAGGTTGCT-TTAGACAGGTCTATCCCAACCTTTT-TTTAAGTTGCCTTAAACAAG
*
24500670 ATCTATCGCAACCTTTTTAGGGTTACCT-TAAACGAATCTATCACC
64 GTCTATCGCAACCTTTTTAGGGTT-CCTATAAACGAATCTATC-CC
* *
24500715 AACCTTTTTAAGGTTGCTTTAGACAAGTCTATCCCAACCTTTTTTTAAGGTTGCCATAAACAAGG
1 AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAA-GTTGCCTTAAACAAGG
24500780 TCTAT
65 TCTAT
24500785 TGTAACATTT
Statistics
Matches: 142, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
105 1 0.01
106 27 0.19
107 7 0.05
108 50 0.35
109 56 0.39
110 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (107 bp):
AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAAGTTGCCTTAAACAAGGT
CTATCGCAACCTTTTTAGGGTTCCTATAAACGAATCTATCCC
Found at i:24502654 original size:36 final size:36
Alignment explanation
Indices: 24502575--24502654 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
24502565 TCTATGTTTT
* *
24502575 ATTAATTTACTTTATTGTTTAAAAAGTTTAAAGTAA
1 ATTAATTTACTTTATTATTTAAAAAGTTGAAAGTAA
* *
24502611 ATAAATTTA-TTTATTATTTAAAAA-TTGAATTGTAAA
1 ATTAATTTACTTTATTATTTAAAAAGTTGAA-AGT-AA
24502647 ATTAATTT
1 ATTAATTT
24502655 TATAGGTTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
34 4 0.11
35 16 0.43
36 17 0.46
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (36 bp):
ATTAATTTACTTTATTATTTAAAAAGTTGAAAGTAA
Found at i:24507323 original size:28 final size:29
Alignment explanation
Indices: 24507269--24507327 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
24507259 TAGTTCAAAT
*
24507269 ATTTTATTTTGATTAAAATATTGATGTAA
1 ATTTTATTTTGAATAAAATATTGATGTAA
*
24507298 ATTTT-TTTTGAAATAAAATGTT-ATGTAA
1 ATTTTATTTTG-AATAAAATATTGATGTAA
24507326 AT
1 AT
24507328 ATTAAGAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 13 0.48
29 14 0.52
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (29 bp):
ATTTTATTTTGAATAAAATATTGATGTAA
Found at i:24509432 original size:49 final size:48
Alignment explanation
Indices: 24509365--24509489 Score: 130
Period size: 49 Copynumber: 2.6 Consensus size: 48
24509355 CTTAGGAATA
* * *
24509365 AATTTTTTTGGTTTAAGTTAGTCTTTAAATTT-AGCAATT-ATTTTCATATT
1 AATTTTTTT--TTCAAGTTAATCATTAAATTTGA-CAATTAATTTT-ATATT
* *
24509415 GAGTTTTTTTTTCAAGTTAATCATTAAATTTGATAATTAATTTTATATT
1 -AATTTTTTTTTCAAGTTAATCATTAAATTTGACAATTAATTTTATATT
*
24509464 AATTTTTTTTT-AAATTAATCATTAAA
1 AATTTTTTTTTCAAGTTAATCATTAAA
24509490 CTTAATAATT
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
47 14 0.22
48 10 0.15
49 27 0.42
50 6 0.09
51 8 0.12
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (48 bp):
AATTTTTTTTTCAAGTTAATCATTAAATTTGACAATTAATTTTATATT
Found at i:24509488 original size:47 final size:49
Alignment explanation
Indices: 24509400--24509512 Score: 142
Period size: 47 Copynumber: 2.3 Consensus size: 49
24509390 TAAATTTAGC
* * * *
24509400 AATTATTTTCATATTGAGTTTTTTTTTCAAGTTAATCATTAAATTTGAT
1 AATTATTTTCATATTGAATTTTTTTTTCAAATTAATCATTAAACTTAAT
24509449 AATTAATTTT-ATATT-AATTTTTTTTT-AAATTAATCATTAAACTTAAT
1 AATT-ATTTTCATATTGAATTTTTTTTTCAAATTAATCATTAAACTTAAT
* *
24509496 AATTGTTATCATATTGA
1 AATTATTTTCATATTGA
24509513 GGTCTGAATT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
46 3 0.05
47 27 0.49
48 11 0.20
49 9 0.16
50 5 0.09
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (49 bp):
AATTATTTTCATATTGAATTTTTTTTTCAAATTAATCATTAAACTTAAT
Found at i:24512248 original size:66 final size:67
Alignment explanation
Indices: 24512126--24512259 Score: 216
Period size: 66 Copynumber: 2.0 Consensus size: 67
24512116 TAGCTATCTA
*
24512126 TTGTCACAGCCTTTCTGATGAATTGATACTATTATACTTACCATTGTATTACTGATTGCATGCCT
1 TTGTCACAGCCTTTCTGATGAATTGATACTATTATACTTACCATTCTATTACTGATTGCATGCCT
24512191 AC
66 AC
* * * *
24512193 TTGTCACTGTCTTTTTGATGAATTGATACTGTT-TACTTACCATTCTATTACTGATTGCATGCCT
1 TTGTCACAGCCTTTCTGATGAATTGATACTATTATACTTACCATTCTATTACTGATTGCATGCCT
24512257 AC
66 AC
24512259 T
1 T
24512260 GTTACCTTTG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
66 33 0.53
67 29 0.47
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.43
Consensus pattern (67 bp):
TTGTCACAGCCTTTCTGATGAATTGATACTATTATACTTACCATTCTATTACTGATTGCATGCCT
AC
Found at i:24512360 original size:38 final size:38
Alignment explanation
Indices: 24512267--24512374 Score: 117
Period size: 38 Copynumber: 2.8 Consensus size: 38
24512257 ACTGTTACCT
* * * * * *
24512267 TTGAACTGAATACAAGTTAAGTATTTCTATTGCTACTG
1 TTGAACTAAATACATGTTAAGCATGTCTACTACTACTG
* *
24512305 TTGAACCAGATACATGTTAAGCATGTCTACTACTACTG
1 TTGAACTAAATACATGTTAAGCATGTCTACTACTACTG
* *
24512343 TTGAACTAAATATATGTTAAAACATGTCTACT
1 TTGAACTAAATACATGTT-AAGCATGTCTACT
24512375 GTTTTATGTA
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
38 45 0.79
39 12 0.21
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (38 bp):
TTGAACTAAATACATGTTAAGCATGTCTACTACTACTG
Found at i:24512538 original size:48 final size:45
Alignment explanation
Indices: 24512467--24512629 Score: 134
Period size: 48 Copynumber: 3.5 Consensus size: 45
24512457 TAATAATTTA
* *
24512467 CAAACACTGGTGGTTTATCCACAAGCTTACTGGCAACGTATTAACTTG
1 CAAACACAGGTGGTTCATCCACAA-CTTACTGGCAAC-TATTAAC-TG
* * * * *
24512515 CAAACACAGGTGGTTCATTCACAAACTTAGTGGCAACTTTTATCTA
1 CAAACACAGGTGGTTCATCCAC-AACTTACTGGCAACTATTAACTG
* * *
24512561 CAAACACA--TTGTGT-ATTCACAACCTACTGGCAACATATTAACCTG
1 CAAACACAGGTGGT-TCATCCACAACTTACTGGCAAC-TATTAA-CTG
* *
24512606 TAAACATAGGTGGTTCATCCACAA
1 CAAACACAGGTGGTTCATCCACAA
24512630 ACTAGAGTGT
Statistics
Matches: 91, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
43 12 0.13
44 13 0.14
45 9 0.10
46 10 0.11
47 15 0.16
48 30 0.33
49 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (45 bp):
CAAACACAGGTGGTTCATCCACAACTTACTGGCAACTATTAACTG
Found at i:24516149 original size:25 final size:23
Alignment explanation
Indices: 24516101--24516164 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 23
24516091 TCATCACCTA
24516101 AATTTTATTTTATTTC-TTCATTTCC
1 AATTTT-TTTT-TTTCTTTCATTT-C
24516126 AATATCTTTTTTTTTCTTTC-TTTC
1 AAT-T-TTTTTTTTTCTTTCATTTC
*
24516150 AATTTTTTTTCTTCT
1 AATTTTTTTTTTTCT
24516165 CTCAAATTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 10 0.29
23 1 0.03
24 4 0.11
25 10 0.29
26 8 0.23
27 2 0.06
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (23 bp):
AATTTTTTTTTTTCTTTCATTTC
Found at i:24516164 original size:18 final size:18
Alignment explanation
Indices: 24516133--24516200 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 18
24516123 TCCAATATCT
24516133 TTTTTTTTCTTTCTTTCAA
1 TTTTTTTTC-TTCTTTCAA
*
24516152 TTTTTTTTCTTCTCTCAAA
1 TTTTTTTTCTTCTTTC-AA
*
24516171 TTCTTTTATTCTTCTTTCAT
1 TT-TTTT-TTCTTCTTTCAA
24516191 TTTCTTTTTC
1 TTT-TTTTTC
24516201 ACTCGAGTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
18 6 0.14
19 17 0.40
20 10 0.24
21 9 0.21
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTTTCTTCTTTCAA
Found at i:24517101 original size:27 final size:27
Alignment explanation
Indices: 24517077--24517271 Score: 264
Period size: 27 Copynumber: 7.2 Consensus size: 27
24517067 TTAGTTTACC
* **
24517077 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
24517104 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
24517131 AAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
24517158 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
24517185 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
24517212 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
24517239 AAATTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
24517266 AAATTA
1 AAATTA
24517272 TTGAAATACC
Statistics
Matches: 148, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:24517272 original size:27 final size:27
Alignment explanation
Indices: 24517077--24517342 Score: 238
Period size: 27 Copynumber: 9.9 Consensus size: 27
24517067 TTAGTTTACC
* * * **
24517077 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTATCAAAATACCCCTGATTTGTA
*
24517104 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGATTTGTA
** *
24517131 AAATTA-CTAAAATACCATTTG-TTTATA
1 AAATTATC-AAAATACC-CCTGATTTGTA
* *
24517158 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGATTTGTA
* *
24517185 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGATTTGTA
24517212 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTATCAAAATACCCCTGA-TTTGTA
*
24517239 AAATTATCAAAATACCCCTGATTTGTG
1 AAATTATCAAAATACCCCTGATTTGTA
** **
24517266 AAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTATCAAAATACCCCT-GATTTGTA
** *
24517293 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTATCAAAATACCCCT-GATTTGTA
* *
24517320 AAATTACCAAAGTA-CCCTGATTT
1 AAATTATCAAAATACCCCTGATTT
24517343 ACAGAATTAC
Statistics
Matches: 208, Mismatches: 24, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
26 11 0.05
27 193 0.93
28 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTATCAAAATACCCCTGATTTGTA
Found at i:24517279 original size:81 final size:81
Alignment explanation
Indices: 24517077--24517342 Score: 279
Period size: 81 Copynumber: 3.3 Consensus size: 81
24517067 TTAGTTTACC
* * **
24517077 AAATTACCAAAATACCCTTGGTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTA-CTAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTATC-AA
** * *
24517141 AATACCATTTGTTTATA
65 AATACCCCTAGTTTGTA
* *
24517158 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTATCAAA
24517223 ATACCCCTAGTTTGTA
66 ATACCCCTAGTTTGTA
* * ** *** **
24517239 AAATTATCAAAATACCCCTGATTTGTGAAATTATTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCT-GGTTTGTAAAATTATCAA
* *
24517303 AATA-CCCTCGACTTGTA
65 AATACCCCTAG-TTTGTA
*
24517320 AAATTACCAAAGTA-CCCTGATTT
1 AAATTACCAAAATACCCCTGATTT
24517343 ACAGAATTAC
Statistics
Matches: 159, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
80 18 0.11
81 140 0.88
82 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTATCAAA
ATACCCCTAGTTTGTA
Found at i:24517379 original size:27 final size:27
Alignment explanation
Indices: 24517332--24517497 Score: 199
Period size: 27 Copynumber: 6.2 Consensus size: 27
24517322 ATTACCAAAG
*
24517332 TACCCT-GATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
24517358 TACCCTCGACTTAAAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
24517385 TACCCTCGATTGACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
**
24517412 TATGCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
24517439 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
24517466 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
24517493 TACCC
1 TACCC
24517498 CTAGTGTGTT
Statistics
Matches: 120, Mismatches: 19, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 6 0.05
27 114 0.95
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:24517430 original size:54 final size:54
Alignment explanation
Indices: 24517332--24517497 Score: 226
Period size: 54 Copynumber: 3.1 Consensus size: 54
24517322 ATTACCAAAG
*
24517332 TACCCT-GATTTACAGAATTACTGTTTTACCCTCGACTTAAAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTAAAAAATTACTGTTT
* ** *
24517385 TACCCTCGATTGACAGAATTACTGTTTTATGCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTAAAAAATTACTGTTT
* * * * **
24517439 TACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTAAAAAATTACTGTTT
24517493 TACCC
1 TACCC
24517498 CTAGTGTGTT
Statistics
Matches: 98, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 6 0.06
54 92 0.94
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTAAAAAATTACTGTTT
Found at i:24517778 original size:27 final size:26
Alignment explanation
Indices: 24517734--24517785 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
24517724 CTCGTTGCAA
*
24517734 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
24517761 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
24517786 GAAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:24517853 original size:26 final size:27
Alignment explanation
Indices: 24517824--24517883 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
24517814 CCACATATAT
*
24517824 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
24517850 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
24517877 ATATCTG
1 ATATCTG
24517884 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:24518037 original size:31 final size:31
Alignment explanation
Indices: 24518002--24518103 Score: 150
Period size: 31 Copynumber: 3.3 Consensus size: 31
24517992 TTGCATTCAC
* *
24518002 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATTCTG
* * *
24518033 ATTCTGATTTTAATTCTGTCATCTAATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATTCTG
*
24518064 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATTCTG
24518095 ATTCTGATT
1 ATTCTGATT
24518104 CTCATTTTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATTCTG
Found at i:24518041 original size:6 final size:6
Alignment explanation
Indices: 24518002--24518117 Score: 85
Period size: 6 Copynumber: 18.8 Consensus size: 6
24517992 TTGCATTCAC
* * * *
24518002 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
24518051 -TCATCTA ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
24518101 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
24518118 AGTTTTGATA
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
5 4 0.05
6 69 0.81
7 9 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:24518074 original size:37 final size:36
Alignment explanation
Indices: 24518024--24518117 Score: 99
Period size: 31 Copynumber: 2.7 Consensus size: 36
24518014 ATTCTGTTAC
* *
24518024 CTGATACTGATTCTGATTTTAATTCTGTCATCTAATT
1 CTGATTCTGATTCTGATTTT-ATTCTGTCACCTAATT
*
24518061 CTGATTCTGATTCTG-----ATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTTTATTCTGTCACCTAATT
*
24518092 CTGATTCTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTTT-ATTCT
24518118 AGTTTTGATA
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
31 28 0.60
37 19 0.40
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (36 bp):
CTGATTCTGATTCTGATTTTATTCTGTCACCTAATT
Found at i:24524671 original size:42 final size:42
Alignment explanation
Indices: 24524624--24524714 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
24524614 TCATTTACTT
* * *
24524624 GATGCCATAGT-CCAAATATGGTCTTACACGAAGTCTCATATC
1 GATGCCAT-GTCCCAAACATGGTCTTACACGAAATCACATATC
* *
24524666 GATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATC
1 GATGCCATGTCCCAAACATGGTCTTACACGAAATCACATATC
24524708 GATGCCA
1 GATGCCA
24524715 ATTCCGTATC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 2 0.05
42 41 0.95
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
GATGCCATGTCCCAAACATGGTCTTACACGAAATCACATATC
Found at i:24524754 original size:48 final size:48
Alignment explanation
Indices: 24524667--24524864 Score: 272
Period size: 48 Copynumber: 4.1 Consensus size: 48
24524657 TCTCATATCG
* * **
24524667 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCA
1 ATGCCATGTCCTAGATATGGTCTTACATGGGATCACATATCGATGCCA
* * *
24524715 ATTCCGTATCCTAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCTAGATATGGTCTTACATGGGATCACATATCGATGCCA
* *
24524763 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCTAGATATGGTCTTACATGGGATCACATATCGATGCCA
* * *
24524811 ATGCCATGTCCTAGACT-TGGTCTTATATGGGATCACATATTGATGGCA
1 ATGCCATGTCCTAGA-TATGGTCTTACATGGGATCACATATCGATGCCA
24524859 ATGCCA
1 ATGCCA
24524865 GACATGGTCT
Statistics
Matches: 132, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
48 132 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCTAGATATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:24524798 original size:96 final size:96
Alignment explanation
Indices: 24524667--24524864 Score: 308
Period size: 96 Copynumber: 2.1 Consensus size: 96
24524657 TCTCATATCG
* *
24524667 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATTCCGTATCCTAGA-T
1 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGCCATATCCTAGACT
24524731 ATGGTCTTACATGGGATCACATATCGATGCCA
66 -TGGTCTTACATGGGATCACATATCGATGCCA
** *
24524763 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCTAGACT
1 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGCCATATCCTAGACT
* * *
24524828 TGGTCTTATATGGGATCACATATTGATGGCA
66 TGGTCTTACATGGGATCACATATCGATGCCA
24524859 ATGCCA
1 ATGCCA
24524865 GACATGGTCT
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 92 0.99
97 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGCCATATCCTAGACT
TGGTCTTACATGGGATCACATATCGATGCCA
Found at i:24524917 original size:37 final size:37
Alignment explanation
Indices: 24524868--24524952 Score: 100
Period size: 37 Copynumber: 2.3 Consensus size: 37
24524858 AATGCCAGAC
* * *
24524868 ATGGTCTTACATGGT-ATCACAATGCCATAGCCTAGCT
1 ATGGTCTTACAT-GTCATCACAACGCCATAGCCCAACT
* *
24524905 ATGGTCTTACATGTCATTACGACGCCATAGCCCAACT
1 ATGGTCTTACATGTCATCACAACGCCATAGCCCAACT
*
24524942 GTGGTCTTACA
1 ATGGTCTTACA
24524953 CATACTCACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 2 0.05
37 39 0.95
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (37 bp):
ATGGTCTTACATGTCATCACAACGCCATAGCCCAACT
Found at i:24526459 original size:49 final size:48
Alignment explanation
Indices: 24526395--24526490 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
24526385 GGGACACACC
* * * *
24526395 CGTGTGAGGTGGCTTAGGCCGTGTTTAGAGTCTGCTAAATAGACACGGT
1 CGTGTGAGGTGGCTTAGGCAGTG-TTAAAATCTACTAAATAGACACGGT
*
24526444 CGTGTG-GTGTGGCTTAGGCAGTGTTAAAATCTATTAAATAGACACGG
1 CGTGTGAG-GTGGCTTAGGCAGTGTTAAAATCTACTAAATAGACACGG
24526491 GTGCGTGGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
48 21 0.51
49 20 0.49
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (48 bp):
CGTGTGAGGTGGCTTAGGCAGTGTTAAAATCTACTAAATAGACACGGT
Found at i:24542277 original size:27 final size:27
Alignment explanation
Indices: 24542246--24542325 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 27
24542236 ATGAAAAATT
24542246 AATATATA-TTTTATTTATTTAATATAA
1 AATATATATTTTTA-TTATTTAATATAA
24542273 AATATATATTTTTATTATTTAATATAA
1 AATATATATTTTTATTATTTAATATAA
* *
24542300 AATAAATTTTTTTATTATTTAATATA
1 AATATATATTTTTATTATTTAATATA
24542326 TATGAAAACT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
27 45 0.90
28 5 0.10
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
AATATATATTTTTATTATTTAATATAA
Found at i:24542696 original size:23 final size:23
Alignment explanation
Indices: 24542670--24542714 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
24542660 TTTGCAATGC
24542670 AAATGAATGTTGGGGATTCCAAA
1 AAATGAATGTTGGGGATTCCAAA
*
24542693 AAATGAATGTTGGTGATTCCAA
1 AAATGAATGTTGGGGATTCCAA
24542715 TTTGCAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (23 bp):
AAATGAATGTTGGGGATTCCAAA
Found at i:24542723 original size:27 final size:25
Alignment explanation
Indices: 24542664--24542728 Score: 80
Period size: 23 Copynumber: 2.6 Consensus size: 25
24542654 CGAGATTTTG
24542664 CAATGCAAATGAATGTTGGGGATTC
1 CAATGCAAATGAATGTTGGGGATTC
* *
24542689 CAA--AAAATGAATGTTGGTGATTC
1 CAATGCAAATGAATGTTGGGGATTC
24542712 CAATTTGCAAATGAATG
1 CAA--TGCAAATGAATG
24542729 GTGATTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 21 0.64
25 3 0.09
27 9 0.27
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (25 bp):
CAATGCAAATGAATGTTGGGGATTC
Found at i:24543957 original size:20 final size:20
Alignment explanation
Indices: 24543911--24543957 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
24543901 CAAAATCTCC
* *
24543911 ATACTATAAATTAACAAGTT
1 ATACAATAAATTAACAAGAT
*
24543931 ATACAATAATTTAACAAAGAT
1 ATACAATAAATTAAC-AAGAT
24543952 AT-CAAT
1 ATACAAT
24543958 TTACCAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (20 bp):
ATACAATAAATTAACAAGAT
Found at i:24544546 original size:2 final size:2
Alignment explanation
Indices: 24544539--24544573 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
24544529 TTAGTAAGTG
24544539 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24544574 GGGTTTTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24545337 original size:18 final size:16
Alignment explanation
Indices: 24545308--24545348 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
24545298 TTACAAAATC
24545308 TTAATTTATTTCCCAAT
1 TTAATTTATTT-CCAAT
24545325 TTAATTGTATTTCCAAT
1 TTAATT-TATTTCCAAT
24545342 TT-ATTTA
1 TTAATTTA
24545349 ATTGTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 2 0.09
16 3 0.13
17 13 0.57
18 5 0.22
ACGTcount: A:0.29, C:0.12, G:0.02, T:0.56
Consensus pattern (16 bp):
TTAATTTATTTCCAAT
Found at i:24555271 original size:17 final size:17
Alignment explanation
Indices: 24555251--24555283 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24555241 CGAGAAACAA
*
24555251 ACTAAAAACGGAAAAAG
1 ACTAAAAACAGAAAAAG
24555268 ACTAAAAACAGAAAAA
1 ACTAAAAACAGAAAAA
24555284 ATGGGTCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.12, G:0.12, T:0.06
Consensus pattern (17 bp):
ACTAAAAACAGAAAAAG
Found at i:24568577 original size:48 final size:48
Alignment explanation
Indices: 24568522--24568835 Score: 276
Period size: 48 Copynumber: 6.5 Consensus size: 48
24568512 TGTGCTAATA
* * *
24568522 TAAGACCATATTTGGGACATGGCGTCGGCCACGATATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
* * * * * * * *
24568570 TAAGACCATATTTGGAACATGGCATCGGCAATGTTTTGAGAGGCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
* * * ** * * *
24568618 TAAGACCATGCCTAGGACATGGCATCGG-TATTAATATGTGCA-CTAGTT
1 TAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAG-AGCCAGTG
* * *
24568666 TAAAACCATGTCTCGGACATGGCATCGGCCGC-ATTATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCCAGTG
* * * * *
24568714 TAAGACCATGTCTCGGACATGGCATCGG-CATTGAAACGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTG
** * *
24568762 TAAGACCATGTCTGGGACATGGCATTAGCCTCGATATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
*
24568810 TAAGACCATGTCAGGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
24568836 AGCAATTTAC
Statistics
Matches: 212, Mismatches: 46, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
47 4 0.02
48 205 0.97
49 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
Found at i:24568799 original size:144 final size:144
Alignment explanation
Indices: 24568536--24568835 Score: 338
Period size: 144 Copynumber: 2.1 Consensus size: 144
24568526 ACCATATTTG
* *
24568536 GGACATGGCGTCGGCCACGATATGAGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCAA
1 GGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATATTCGGAACATGGCATCGGCAA
**** * * * *
24568601 TGTTTTGAGAGGCAGTGTAAGACCATGCCTAGGACATGGCATCGGTATTAATATGTGCA-CTAGT
66 TGAAACGAGAGGCAGTGTAAGACCATGCCTAGGACATGGCATCAGCATCAATATGTG-AGCCAGT
* *
24568665 TTAAAACCATGTCTC
130 GTAAAACCATGTCAC
* *
24568680 GGACATGGCATCGGCCGC-ATTATGAGAGCCAGTGTAAGACCATGTCTCGG-ACATGGCATCGGC
1 GGACATGGCATCGGCCACGA-TATGAGAGCCAGTGTAAGACCATAT-TCGGAACATGGCATCGGC
* * * * * *
24568743 ATTGAAACGAGA-GCTAGTGTAAGACCATGTCTGGGACATGGCATTAGCCTCGATATGTGAGCCA
64 AATGAAACGAGAGGC-AGTGTAAGACCATGCCTAGGACATGGCATCAGCATCAATATGTGAGCCA
* *
24568807 GTGTAAGACCATGTCAG
128 GTGTAAAACCATGTCAC
24568824 GGACATGGCATC
1 GGACATGGCATC
24568836 AGCAATTTAC
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
143 4 0.03
144 123 0.95
145 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (144 bp):
GGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATATTCGGAACATGGCATCGGCAA
TGAAACGAGAGGCAGTGTAAGACCATGCCTAGGACATGGCATCAGCATCAATATGTGAGCCAGTG
TAAAACCATGTCAC
Found at i:24585575 original size:29 final size:29
Alignment explanation
Indices: 24585533--24585611 Score: 149
Period size: 29 Copynumber: 2.7 Consensus size: 29
24585523 TATATATATG
24585533 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
24585562 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
24585591 AACTATCGAGCACTAAGTGTG
1 AATTATCGAGCACTAAGTGTG
24585612 TGATTTCATT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:24586981 original size:2 final size:2
Alignment explanation
Indices: 24586974--24587015 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
24586964 TCAGGTGATT
24586974 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24587016 CACGTTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24596129 original size:23 final size:24
Alignment explanation
Indices: 24596086--24596218 Score: 73
Period size: 24 Copynumber: 5.5 Consensus size: 24
24596076 TCCGGGCTAT
*
24596086 ATAA-CGGGAAGCTCATAAA-AGCC
1 ATAATCGGGAAGCTCACAAAGA-CC
*
24596109 ATAATCGGGAAGTTCACAAAGAACC
1 ATAATCGGGAAGCTCACAAAG-ACC
* *
24596134 AT-ATAGGGAAGCTCACAAAAAGCC
1 ATAATCGGGAAGCTCACAAAGA-CC
**
24596158 -T-ATTAGGAAGCTCACAAAGAGCC
1 ATAATCGGGAAGCTCACAAAGA-CC
* *
24596181 ATGTAA-CGGGAAGCTCTAGATAG-CC
1 A--TAATCGGGAAGCTC-ACAAAGACC
24596206 ATATATCGGGAAG
1 ATA-ATCGGGAAG
24596219 TTCAAGCGAG
Statistics
Matches: 87, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
23 27 0.31
24 31 0.36
25 14 0.16
26 10 0.11
27 5 0.06
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.17
Consensus pattern (24 bp):
ATAATCGGGAAGCTCACAAAGACC
Found at i:24596142 original size:24 final size:25
Alignment explanation
Indices: 24596091--24596196 Score: 87
Period size: 24 Copynumber: 4.4 Consensus size: 25
24596081 GCTATATAAC
* * * *
24596091 GGGAAGCTCATAAA-AGCCATAATC
1 GGGAAGCTCACAAAGAACCATATTA
*
24596115 GGGAAGTTCACAAAGAACCATA-TA
1 GGGAAGCTCACAAAGAACCATATTA
24596139 GGGAAGCTCACAAA-AAGCC-TATTA
1 GGGAAGCTCACAAAGAA-CCATATTA
* * *
24596163 -GGAAGCTCACAAAGAGCCATGTAA
1 GGGAAGCTCACAAAGAACCATATTA
24596187 CGGGAAGCTC
1 -GGGAAGCTC
24596197 TAGATAGCCA
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
23 19 0.28
24 34 0.51
25 6 0.09
26 8 0.12
ACGTcount: A:0.41, C:0.21, G:0.24, T:0.15
Consensus pattern (25 bp):
GGGAAGCTCACAAAGAACCATATTA
Found at i:24598991 original size:16 final size:16
Alignment explanation
Indices: 24598972--24599002 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
24598962 TGACTTGAAG
24598972 TCAAGTTAACTTTAAC
1 TCAAGTTAACTTTAAC
24598988 TCAAGTTAACTTTAA
1 TCAAGTTAACTTTAA
24599003 GGGAAGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (16 bp):
TCAAGTTAACTTTAAC
Found at i:24599875 original size:20 final size:20
Alignment explanation
Indices: 24599852--24599903 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
24599842 GTCTGATGAG
* * *
24599852 TTACCAAAATTTCTATCATT
1 TTACCAATATTTATAACATT
* *
24599872 TTACTAATATTTATAAGATT
1 TTACCAATATTTATAACATT
24599892 TTACCAATATTT
1 TTACCAATATTT
24599904 TCAAAATTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.02, T:0.48
Consensus pattern (20 bp):
TTACCAATATTTATAACATT
Found at i:24599912 original size:20 final size:20
Alignment explanation
Indices: 24599869--24599912 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
24599859 AATTTCTATC
* *
24599869 ATTTTACTAATATTTATAAG
1 ATTTTACCAATATTTATAAA
24599889 ATTTTACCAATATTT-TCAAA
1 ATTTTACCAATATTTAT-AAA
24599909 ATTT
1 ATTT
24599913 CTAAACCCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTTTACCAATATTTATAAA
Found at i:24599964 original size:20 final size:20
Alignment explanation
Indices: 24599939--24600274 Score: 202
Period size: 20 Copynumber: 16.8 Consensus size: 20
24599929 GTCTTAACAA
24599939 TTACCAAAATTTCT-ATGACT
1 TTACCAAAATTTCTAATGA-T
24599959 TTACCAAAATATTC-AATGAT
1 TTACCAAAAT-TTCTAATGAT
24599979 TTACCAAAATTTCTAATGAT
1 TTACCAAAATTTCTAATGAT
* * *
24599999 TTACCAATATATCTAATGAC
1 TTACCAAAATTTCTAATGAT
* * * *
24600019 TTGCTAACATTTCTAAGGAT
1 TTACCAAAATTTCTAATGAT
* * *
24600039 TTATCAAAATATCT-ATCAAT
1 TTACCAAAATTTCTAAT-GAT
* * *
24600059 TTTCGAGTAAA--TCT-ATCGGT
1 TTACCA--AAATTTCTAAT-GAT
*
24600079 TTACCAAAATATCTAATGAT
1 TTACCAAAATTTCTAATGAT
* * * *
24600099 TTAACAATATATATCTAACGGT
1 TTACCAA-A-ATTTCTAATGAT
* *
24600121 TTACCAATATTT-TAAAGGAT
1 TTACCAAAATTTCT-AATGAT
** * **
24600141 TTATAAAAATATCTAACAAT
1 TTACCAAAATTTCTAATGAT
*
24600161 TTACCAAAATTTCTAAAGAT
1 TTACCAAAATTTCTAATGAT
* * * **
24600181 TTATCAAGATATCTAACAAT
1 TTACCAAAATTTCTAATGAT
24600201 TTACCAAAATTTCTAATG-T
1 TTACCAAAATTTCTAATGAT
* * *
24600220 TTACCGAAATATCAAATGAT
1 TTACCAAAATTTCTAATGAT
* *
24600240 TTATCAAAATTTCTAATGTT
1 TTACCAAAATTTCTAATGAT
*
24600260 TTACTAAAATTTCTA
1 TTACCAAAATTTCTA
24600275 TCAATTTACC
Statistics
Matches: 239, Mismatches: 63, Indels: 28
0.72 0.19 0.08
Matches are distributed among these distances:
18 3 0.01
19 21 0.09
20 185 0.77
21 11 0.05
22 19 0.08
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (20 bp):
TTACCAAAATTTCTAATGAT
Found at i:24600115 original size:22 final size:22
Alignment explanation
Indices: 24600087--24600130 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
24600077 GTTTACCAAA
*
24600087 ATATCTAATGATTTAACAATAT
1 ATATCTAACGATTTAACAATAT
* *
24600109 ATATCTAACGGTTTACCAATAT
1 ATATCTAACGATTTAACAATAT
24600131 TTTAAAGGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.39
Consensus pattern (22 bp):
ATATCTAACGATTTAACAATAT
Found at i:24600161 original size:102 final size:100
Alignment explanation
Indices: 24599978--24600162 Score: 246
Period size: 102 Copynumber: 1.8 Consensus size: 100
24599968 TATTCAATGA
* * * * *
24599978 TTTACCAAAATTTCTAATGATTTACCAATATATCTAATGACTTGCTAACATTTCTAAGGATTTAT
1 TTTACCAAAATATCTAATGATTTACAAATATATCTAACGACTTACCAACATTTCTAAGGATTTAT
* *
24600043 CAAAATATCTATCAATTTTCGAGTAAATCTATCGG
66 AAAAATATCTAACAATTTTCGAGTAAATCTATCGG
** *
24600078 TTTACCAAAATATCTAATGATTTAACAATATATATCTAACGGTTTACCAATATTT-TAAAGGATT
1 TTTACCAAAATATCTAATGATTT-ACAA-ATATATCTAACGACTTACCAACATTTCT-AAGGATT
24600142 TATAAAAATATCTAACAATTT
63 TATAAAAATATCTAACAATTT
24600163 ACCAAAATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
100 22 0.31
101 4 0.06
102 46 0.64
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (100 bp):
TTTACCAAAATATCTAATGATTTACAAATATATCTAACGACTTACCAACATTTCTAAGGATTTAT
AAAAATATCTAACAATTTTCGAGTAAATCTATCGG
Found at i:24600193 original size:102 final size:100
Alignment explanation
Indices: 24599958--24600196 Score: 234
Period size: 102 Copynumber: 2.4 Consensus size: 100
24599948 TTTCTATGAC
* * * * *
24599958 TTTACCAAAATATTC-AATGATTTACCAAAATTTCTAATGATTTACCAATATATCTAATGACTTG
1 TTTACCAAAAT-TTCTAAAGATTTACCAAAATATCTAATGATTTACAAATATATCTAACGACTTA
* * *
24600022 CTAACATTTCTAAGGATTTATCAAAATATCTATCAA
65 CCAACATTTCTAAGGATTTATAAAAATATCTAACAA
* * ** * **
24600058 TTTTCGAGTAAA--TCTATCGGTTTACCAAAATATCTAATGATTTAACAATATATATCTAACGGT
1 TTTACCA--AAATTTCTAAAGATTTACCAAAATATCTAATGATTT-ACAA-ATATATCTAACGAC
*
24600121 TTACCAATATTT-TAAAGGATTTATAAAAATATCTAACAA
62 TTACCAACATTTCT-AAGGATTTATAAAAATATCTAACAA
* *
24600160 TTTACCAAAATTTCTAAAGATTTATCAAGATATCTAA
1 TTTACCAAAATTTCTAAAGATTTACCAAAATATCTAA
24600197 CAATTTACCA
Statistics
Matches: 109, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
99 2 0.02
100 32 0.29
101 4 0.04
102 71 0.65
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (100 bp):
TTTACCAAAATTTCTAAAGATTTACCAAAATATCTAATGATTTACAAATATATCTAACGACTTAC
CAACATTTCTAAGGATTTATAAAAATATCTAACAA
Found at i:24600245 original size:59 final size:59
Alignment explanation
Indices: 24600160--24600274 Score: 142
Period size: 59 Copynumber: 1.9 Consensus size: 59
24600150 TATCTAACAA
* *
24600160 TTTACCAAAATTTCTAAAGATTTATCAAGATATCTAACAATTTACCAAAATTTCTAATG
1 TTTACCAAAATATCTAAAGATTTATCAAAATATCTAACAATTTACCAAAATTTCTAATG
* * *** *
24600219 TTTACCGAAATATC-AAATGATTTATCAAAATTTCTAATGTTTTACTAAAATTTCTA
1 TTTACCAAAATATCTAAA-GATTTATCAAAATATCTAACAATTTACCAAAATTTCTA
24600275 TCAATTTACC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
58 3 0.06
59 44 0.94
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.40
Consensus pattern (59 bp):
TTTACCAAAATATCTAAAGATTTATCAAAATATCTAACAATTTACCAAAATTTCTAATG
Found at i:24600248 original size:39 final size:39
Alignment explanation
Indices: 24600149--24600260 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 39
24600139 ATTTATAAAA
* * *
24600149 ATATCTAACAATTTACCAAAATTTCTAAAGATTTATCAAG
1 ATATCAAACAATTTACCAAAATTTCTAATG-TTTACCAAG
*
24600189 ATATCTAACAATTTACCAAAATTTCTAATGTTTACCGAA-
1 ATATCAAACAATTTACCAAAATTTCTAATGTTTACC-AAG
** *
24600228 ATATCAAATGATTTATCAAAATTTCTAATGTTT
1 ATATCAAACAATTTACCAAAATTTCTAATGTTT
24600261 TACTAAAATT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 34 0.52
40 31 0.48
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.38
Consensus pattern (39 bp):
ATATCAAACAATTTACCAAAATTTCTAATGTTTACCAAG
Found at i:24600322 original size:20 final size:20
Alignment explanation
Indices: 24600299--24600340 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
24600289 TTTATGAGAC
*
24600299 TTTACCAAA-ATTTCCAAGTT
1 TTTA-CAAATATTTCCAAATT
24600319 TTTACAAATATTTCCAAATT
1 TTTACAAATATTTCCAAATT
24600339 TT
1 TT
24600341 CTAAACCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.36, C:0.17, G:0.02, T:0.45
Consensus pattern (20 bp):
TTTACAAATATTTCCAAATT
Found at i:24600449 original size:20 final size:20
Alignment explanation
Indices: 24600395--24600576 Score: 71
Period size: 20 Copynumber: 9.1 Consensus size: 20
24600385 CTTTACCAAA
* *
24600395 ATATCTAAGGACTTATTAAT
1 ATATCTAACGATTTATTAAT
* *
24600415 ATATTTAATGATTTATTAAT
1 ATATCTAACGATTTATTAAT
* * * *
24600435 GTATCTAACGGTTTATCAAA
1 ATATCTAACGATTTATTAAT
* * ** *
24600455 ATTTTTAA-GAATTTAGCAAA
1 ATATCTAACG-ATTTATTAAT
*
24600475 ATATCTAACGATTT-TCCAAT
1 ATATCTAACGATTTAT-TAAT
* * * **
24600495 ATTTCCAAAGATTTACCAAT
1 ATATCTAACGATTTATTAAT
* ** * *
24600515 GTATCTAATTATTTACTAAA
1 ATATCTAACGATTTATTAAT
* *
24600535 ATATCTAACGATTTATCAAA
1 ATATCTAACGATTTATTAAT
* * *
24600555 ATTTCTATCGATTTATCAAT
1 ATATCTAACGATTTATTAAT
24600575 AT
1 AT
24600577 TTATGAGACT
Statistics
Matches: 121, Mismatches: 37, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
19 1 0.01
20 119 0.98
21 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.42
Consensus pattern (20 bp):
ATATCTAACGATTTATTAAT
Found at i:24600578 original size:20 final size:20
Alignment explanation
Indices: 24600438--24600578 Score: 90
Period size: 20 Copynumber: 7.0 Consensus size: 20
24600428 TATTAATGTA
*
24600438 TCTAACGGTTTATCAAAATT
1 TCTAACGATTTATCAAAATT
* * *
24600458 TTTAA-GAATTTAGCAAAATA
1 TCTAACG-ATTTATCAAAATT
*
24600478 TCTAACGATTT-TCCAATATT
1 TCTAACGATTTAT-CAAAATT
* * * ** *
24600498 TCCAAAGATTTACCAATGTA
1 TCTAACGATTTATCAAAATT
** *
24600518 TCTAATTATTTA-CTAAAATA
1 TCTAACGATTTATC-AAAATT
24600538 TCTAACGATTTATCAAAATT
1 TCTAACGATTTATCAAAATT
* *
24600558 TCTATCGATTTATCAATATT
1 TCTAACGATTTATCAAAATT
24600578 T
1 T
24600579 ATGAGACTTT
Statistics
Matches: 92, Mismatches: 23, Indels: 12
0.72 0.18 0.09
Matches are distributed among these distances:
19 2 0.02
20 88 0.96
21 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.41
Consensus pattern (20 bp):
TCTAACGATTTATCAAAATT
Found at i:24600798 original size:40 final size:39
Alignment explanation
Indices: 24600696--24600798 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 39
24600686 ATGATTTTAG
*
24600696 CAAAATTTATTTGAATTTATCAATATTTCTTAGGATTAC
1 CAAAATTTATATGAATTTATCAATATTTCTTAGGATTAC
* *
24600735 CAAAATATCTA-GAAATTTTATCAATATTTC-TATGGACTTAC
1 CAAAATTTATATG-AA-TTTATCAATATTTCTTA-GGA-TTAC
* *
24600776 CAACATTTATATGAATTAATCAA
1 CAAAATTTATATGAATTTATCAA
24600799 AATATCTAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
38 1 0.02
39 12 0.23
40 24 0.46
41 14 0.27
42 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.41
Consensus pattern (39 bp):
CAAAATTTATATGAATTTATCAATATTTCTTAGGATTAC
Found at i:24602244 original size:11 final size:11
Alignment explanation
Indices: 24602228--24602253 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24602218 AAATAAGCAA
24602228 TTTGATTCCTG
1 TTTGATTCCTG
24602239 TTTGATTCCTG
1 TTTGATTCCTG
24602250 TTTG
1 TTTG
24602254 TTAGATTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.15, G:0.19, T:0.58
Consensus pattern (11 bp):
TTTGATTCCTG
Found at i:24607676 original size:22 final size:22
Alignment explanation
Indices: 24607648--24607693 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
24607638 TCTGAAAATG
24607648 GATGAAAAACCTCAAGGCTTCT
1 GATGAAAAACCTCAAGGCTTCT
24607670 GATGAAAAACCTCAAGGCTTCT
1 GATGAAAAACCTCAAGGCTTCT
24607692 GA
1 GA
24607694 CTTATTCTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (22 bp):
GATGAAAAACCTCAAGGCTTCT
Found at i:24609148 original size:20 final size:18
Alignment explanation
Indices: 24609120--24609170 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
24609110 ACGGCAAAGT
*
24609120 AATAACAAAACAATAGAAA
1 AATAGCAAAACAAT-GAAA
*
24609139 CAATAGCAAAACAGTGAAA
1 -AATAGCAAAACAATGAAA
24609158 ACATAGCAAAACA
1 A-ATAGCAAAACA
24609171 CAACAACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 1 0.04
19 15 0.54
20 12 0.43
ACGTcount: A:0.65, C:0.16, G:0.10, T:0.10
Consensus pattern (18 bp):
AATAGCAAAACAATGAAA
Found at i:24610772 original size:2 final size:2
Alignment explanation
Indices: 24610765--24610791 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24610755 CAAATAGTAC
24610765 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24610792 CGTCTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24611750 original size:10 final size:10
Alignment explanation
Indices: 24611735--24611784 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
24611725 TAATTTTAGG
24611735 ATTTAT-TTT
1 ATTTATCTTT
24611744 CATTTATCTTT
1 -ATTTATCTTT
*
24611755 AATTATCTTT
1 ATTTATCTTT
24611765 ATTTA--TTT
1 ATTTATCTTT
*
24611773 ATTTATATTT
1 ATTTATCTTT
24611783 AT
1 AT
24611785 CTTTTAGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 8 0.23
10 24 0.69
11 3 0.09
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:24611941 original size:21 final size:21
Alignment explanation
Indices: 24611917--24611964 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
24611907 TTCTTTCCAT
* *
24611917 ATTTTCTTCAACAAAAATTTC
1 ATTTTCTTCAAAAAAAATTCC
24611938 ATTTTCTTCAAAAAAAATTCC
1 ATTTTCTTCAAAAAAAATTCC
24611959 ATTTTC
1 ATTTTC
24611965 ATTATATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTTTCTTCAAAAAAAATTCC
Found at i:24612588 original size:41 final size:41
Alignment explanation
Indices: 24612542--24612621 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
24612532 CAGAATTTCA
*
24612542 ATCAAAACTTTTAATTCTGTTTCTATTTT-ATTTTTTTCCAG
1 ATCAAAACTTTTAATTCTATTT-TATTTTAATTTTTTTCCAG
24612583 ATCAAAACTTTTAATTCTATTTTATTTTAATTTTTTTCC
1 ATCAAAACTTTTAATTCTATTTTATTTTAATTTTTTTCC
24612622 CAGGTACGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
40 6 0.16
41 31 0.84
ACGTcount: A:0.26, C:0.14, G:0.03, T:0.57
Consensus pattern (41 bp):
ATCAAAACTTTTAATTCTATTTTATTTTAATTTTTTTCCAG
Found at i:24618183 original size:5 final size:5
Alignment explanation
Indices: 24618167--24618231 Score: 69
Period size: 5 Copynumber: 12.6 Consensus size: 5
24618157 TTTTTATTCA
* *
24618167 TTTAT CTTTAT TTTAT TTTAT TTTATT TTTAT TTTAC TTTGT TTTAT TATT-T
1 TTTAT -TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT T-TTAT
*
24618219 ATTAT TTTAT TTT
1 TTTAT TTTAT TTT
24618232 TAGATGTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
4 2 0.04
5 36 0.72
6 12 0.24
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:24618197 original size:21 final size:21
Alignment explanation
Indices: 24618152--24618231 Score: 64
Period size: 20 Copynumber: 4.0 Consensus size: 21
24618142 GCAACCCAAT
*
24618152 TTTTATTTTTA-TTCA-TTTA
1 TTTTATTTTTATTTTATTTTA
24618171 TCTTTA-TTTTATTTTATTTTA
1 T-TTTATTTTTATTTTATTTTA
* *
24618192 TTTT-TATTTTACTTTGTTTTA
1 TTTTAT-TTTTATTTTATTTTA
24618213 --TTATTTATTATTTTATTTT
1 TTTTATTT-TTATTTTATTTT
24618232 TAGATGTTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
19 10 0.20
20 21 0.43
21 18 0.37
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (21 bp):
TTTTATTTTTATTTTATTTTA
Found at i:24618232 original size:21 final size:21
Alignment explanation
Indices: 24618152--24618233 Score: 67
Period size: 25 Copynumber: 3.5 Consensus size: 21
24618142 GCAACCCAAT
24618152 TTTTATTTTTATTCATTTATCTTTA
1 TTTTATTTTTATT-ATTTA---TTA
*
24618177 TTTTATTTTATTTTATTT-TTA
1 TTTTATTTT-TATTATTTATTA
24618198 TTTTACTTTGTTTTATTATTTATTA
1 TTTTA---T-TTTTATTATTTATTA
24618223 TTTTATTTTTA
1 TTTTATTTTTA
24618234 GATGTTGATA
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
21 13 0.27
22 1 0.02
24 8 0.16
25 24 0.49
26 3 0.06
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.76
Consensus pattern (21 bp):
TTTTATTTTTATTATTTATTA
Found at i:24621014 original size:96 final size:96
Alignment explanation
Indices: 24620845--24621122 Score: 421
Period size: 96 Copynumber: 2.9 Consensus size: 96
24620835 TTTAAGAATG
* *
24620845 TGTTTGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTTGCATCAAAAGGTTTGAT
1 TGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTTGCATCAAAAGGTTCGAT
*
24620910 ACGTTCTTAAGGAAAATAAAAATTAGGAGTA
66 ACGTTCTTAAGCAAAATAAAAATTAGGAGTA
* *
24620941 TGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGTTGTCATCTCTCTTTGCGTCAAAAGGTTCGAT
1 TGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTTGCATCAAAAGGTTCGAT
24621006 ACGTTCTTAAGCAAAATAAAAATTAGGAGTA
66 ACGTTCTTAAGCAAAATAAAAATTAGGAGTA
* * * * * *
24621037 TGTTGGGCTGAGTAACCGGGTTGAGGTGCTTGACTGTCACCTCTCTTCGCATCAAAAGGATCAAT
1 TGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTTGCATCAAAAGGTTCGAT
** *
24621102 ATATGCTTAAGCAAGAATAAA
66 ACGTTCTTAAGCAA-AATAAA
24621123 TAAATAAATA
Statistics
Matches: 165, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
96 159 0.96
97 6 0.04
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (96 bp):
TGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTTGCATCAAAAGGTTCGAT
ACGTTCTTAAGCAAAATAAAAATTAGGAGTA
Found at i:24621787 original size:20 final size:19
Alignment explanation
Indices: 24621762--24621819 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
24621752 ATTTTAGGAT
24621762 TTATTTTCATTTATCTTTAA
1 TTATTTT-ATTTATCTTTAA
* * *
24621782 TTATTTTTAATTATATTTAT
1 TTA-TTTTATTTATCTTTAA
24621802 TTATTTGTATTTATCTTT
1 TTATTT-TATTTATCTTT
24621820 TAGAATTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 3 0.10
20 24 0.77
21 4 0.13
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (19 bp):
TTATTTTATTTATCTTTAA
Found at i:24627370 original size:26 final size:25
Alignment explanation
Indices: 24627343--24627413 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 25
24627333 ATAACCCAAT
*
24627343 TTTTATTTTTATTTCTTTTACTTAA
1 TTTTATTTTTATTTATTTTACTTAA
* *
24627368 TTTTATTTTATTTTTATTTTACTTTA
1 TTTTATTTT-TATTTATTTTACTTAA
24627394 TTTTATTGTTTA-TTATTTTA
1 TTTTATT-TTTATTTATTTTA
24627414 TTTTTTTGAC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.43
26 21 0.52
27 2 0.05
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (25 bp):
TTTTATTTTTATTTATTTTACTTAA
Done.