Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 91 of 345
Found at i:24862784 original size:20 final size:20
Alignment explanation
Indices: 24862761--24862798 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24862751 GTTATTAAGT
24862761 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
24862781 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
24862799 ATGTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:24867206 original size:14 final size:14
Alignment explanation
Indices: 24867187--24867214 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24867177 ACATAAAGAA
24867187 AACCCAAAAACCTC
1 AACCCAAAAACCTC
24867201 AACCCAAAAACCTC
1 AACCCAAAAACCTC
24867215 TAAAGGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.43, G:0.00, T:0.07
Consensus pattern (14 bp):
AACCCAAAAACCTC
Found at i:24868600 original size:20 final size:20
Alignment explanation
Indices: 24868577--24868615 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24868567 AGTTATGGGT
24868577 TGAATTAGATTTTT-ATTAGG
1 TGAATT-GATTTTTAATTAGG
*
24868597 TGAATTTATTTTTAATTAG
1 TGAATTGATTTTTAATTAG
24868616 AAGTAACTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (20 bp):
TGAATTGATTTTTAATTAGG
Found at i:24868826 original size:3 final size:3
Alignment explanation
Indices: 24868818--24868881 Score: 98
Period size: 3 Copynumber: 22.0 Consensus size: 3
24868808 ATATATTTAC
24868818 TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
24868865 TTA -TA TT- TTA TCTA TTA
1 TTA TTA TTA TTA T-TA TTA
24868882 AATGAGATAA
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
2 6 0.11
3 48 0.84
4 3 0.05
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:24869032 original size:16 final size:16
Alignment explanation
Indices: 24869008--24869038 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24868998 TAAGTAAATA
*
24869008 AAATGAAATAAAGAAT
1 AAATAAAATAAAGAAT
24869024 AAATAAAATAAAGAA
1 AAATAAAATAAAGAA
24869039 ACAAAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (16 bp):
AAATAAAATAAAGAAT
Found at i:24869101 original size:19 final size:18
Alignment explanation
Indices: 24869065--24869113 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
24869055 AGAAAGTTAC
*
24869065 AGAGAAAGAAAAGTGAAA
1 AGAGAAAGAAAAGAGAAA
24869083 GAGAGAAAG-AAAGAAGAAA
1 -AGAGAAAGAAAAG-AGAAA
*
24869102 AGAAAAAGAAAA
1 AGAGAAAGAAAA
24869114 AGGGAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (18 bp):
AGAGAAAGAAAAGAGAAA
Found at i:24870104 original size:37 final size:38
Alignment explanation
Indices: 24870055--24870151 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 38
24870045 CGAATAGATT
*
24870055 CGATGAGGCGTTGGTCGCCAC-TTTGCTTCG-GCTTAGC
1 CGATGAGGCGTTGGTCGCCACTTTTGCTTCGAAC-TAGC
* * *
24870092 CGATGAGACGTTGGTCGTCACTTATTTGCTTCGAACTATC
1 CGATGAGGCGTTGGTCGCCAC-T-TTTGCTTCGAACTAGC
24870132 CGATGAGGCGTTGGTCGCCA
1 CGATGAGGCGTTGGTCGCCA
24870152 TTCTGGTGTG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
37 19 0.38
40 30 0.60
41 1 0.02
ACGTcount: A:0.15, C:0.25, G:0.30, T:0.30
Consensus pattern (38 bp):
CGATGAGGCGTTGGTCGCCACTTTTGCTTCGAACTAGC
Found at i:24872309 original size:11 final size:11
Alignment explanation
Indices: 24872293--24872344 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
24872283 TTATAAAACC
*
24872293 TAAAAATAAAG
1 TAAAAATAAAT
*
24872304 TAAAAATAGTAT
1 TAAAAATA-AAT
* *
24872316 TAAAGATAAAA
1 TAAAAATAAAT
24872327 TAAAAAGTAAAT
1 TAAAAA-TAAAT
24872339 TAAAAA
1 TAAAAA
24872345 GATAATGATA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
11 14 0.44
12 18 0.56
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (11 bp):
TAAAAATAAAT
Found at i:24872337 original size:12 final size:13
Alignment explanation
Indices: 24872317--24872349 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
24872307 AAATAGTATT
24872317 AAAGATAAAATAA
1 AAAGATAAAATAA
*
24872330 AAAG-TAAATTAA
1 AAAGATAAAATAA
24872342 AAAGATAA
1 AAAGATAA
24872350 TGATAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (13 bp):
AAAGATAAAATAA
Found at i:24872563 original size:109 final size:109
Alignment explanation
Indices: 24872417--24872745 Score: 640
Period size: 109 Copynumber: 3.0 Consensus size: 109
24872407 CGTGGCGATG
24872417 AGATGTGAAGGTGCTCACAAATCTGATGTAAGGTTGCATTAATGTGATCAAATCGTTGAAAACAT
1 AGATGTGAAGGTGCTCACAAATCTGATGTAAGGTTGCATTAATGTGATCAAATCGTTGAAAACAT
24872482 TGCTGCTCGAATCGTGTGAGACGCTCAGAGATGTCAGAGAGTGA
66 TGCTGCTCGAATCGTGTGAGACGCTCAGAGATGTCAGAGAGTGA
*
24872526 AGATGTGAAGGTGCTCACAAATCTGATGTAAGGTTGCATTAATGTGATCAAATCATTGAAAACAT
1 AGATGTGAAGGTGCTCACAAATCTGATGTAAGGTTGCATTAATGTGATCAAATCGTTGAAAACAT
24872591 TGCTGCTCGAATCGTGTGAGACGCTCAGAGATGTCAGAGAGTGA
66 TGCTGCTCGAATCGTGTGAGACGCTCAGAGATGTCAGAGAGTGA
24872635 AGATGTGAAGGTGCTCACAAATCTGATGTAAGGTTGCATTAATGTGATCAAATCGTTGAAAACAT
1 AGATGTGAAGGTGCTCACAAATCTGATGTAAGGTTGCATTAATGTGATCAAATCGTTGAAAACAT
*
24872700 TGCTGCTCGAATCGTGTGAGATGCTCAGAGATGTCAGAGAGTGA
66 TGCTGCTCGAATCGTGTGAGACGCTCAGAGATGTCAGAGAGTGA
24872744 AG
1 AG
24872746 CAGCCGCATG
Statistics
Matches: 217, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 217 1.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (109 bp):
AGATGTGAAGGTGCTCACAAATCTGATGTAAGGTTGCATTAATGTGATCAAATCGTTGAAAACAT
TGCTGCTCGAATCGTGTGAGACGCTCAGAGATGTCAGAGAGTGA
Found at i:24874180 original size:35 final size:35
Alignment explanation
Indices: 24874113--24874280 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
24874103 TCCTCATTGA
*** *
24874113 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
24874149 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
24874189 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
24874224 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
24874259 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
24874281 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:24874239 original size:75 final size:73
Alignment explanation
Indices: 24874108--24874280 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
24874098 GGTTTTCCTC
*** * * **
24874108 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
24874173 TCAGTATGG
65 TCAGTATGG
*
24874182 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
24874246 ACTCAGTATGG
63 ACTCAGTATGG
24874257 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
24874281 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:24878498 original size:47 final size:47
Alignment explanation
Indices: 24878442--24878610 Score: 209
Period size: 47 Copynumber: 3.6 Consensus size: 47
24878432 AAACTTAGCC
24878442 GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCT
1 GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCT
* * * * *
24878489 GATGCATGTCCCAGACATGTCTTACACTAGC-ATTCATC-TCTACGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAGGCT
* * * *
24878535 GATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATAAT-GTGGCT
1 GATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCT
24878583 GATGCATGTCCCAGACACGTCTTACACT
1 GATGCATGTCCCAGACACGTCTTACACT
24878611 AGCCCTAGTC
Statistics
Matches: 102, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
46 20 0.20
47 58 0.57
48 22 0.22
49 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCT
Found at i:24878587 original size:141 final size:140
Alignment explanation
Indices: 24878304--24878610 Score: 340
Period size: 141 Copynumber: 2.2 Consensus size: 140
24878294 TTGCCGCTGC
* *
24878304 CATGTCCCAGACATGGTCTTACGCTGGCTATCTCCATCGAGGCCAATGCCATGTCCCAGACATGG
1 CATGTCCCAGACA-CGTCTTACACTGGCTATCTCCATCGAGGCCAATGCCATGTCCCAGACATGG
* * * * * *
24878369 TCTTACACTAGTTCTCGTGTATATGTGCTGATGTATATCCCAAACATGTCTTACACTAGCACGAA
65 TCTTACACTAGATCTCATCTATA-GCGCCGATGCATATCCCAAACATGTCTTACACTAGCACGAA
24878434 ACTTAGCCGATG
129 ACTTAGCCGATG
**
24878446 CATGTCCCAGACACGTCTTACACTGGCTATCAT-CATCGAGGCTGATG-CATGTCCCAGACAT-G
1 CATGTCCCAGACACGTCTTACACTGGCTATC-TCCATCGAGGCCAATGCCATGTCCCAGACATGG
* * *
24878508 TCTTACACTAGCAT-TCATCTCTA-CGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTAT
65 TCTTACACTAG-ATCTCATCTATAGCGCCGATG-CATATCCCAAACAT-GTCTTACACTAGC-A-
* *
24878571 C-ATAA-TGTGGCTGATG
125 CGA-AACT-TAGCCGATG
24878587 CATGTCCCAGACACGTCTTACACT
1 CATGTCCCAGACACGTCTTACACT
24878611 AGCCCTAGTC
Statistics
Matches: 142, Mismatches: 15, Indels: 17
0.82 0.09 0.10
Matches are distributed among these distances:
137 6 0.04
138 12 0.08
139 30 0.21
140 18 0.13
141 62 0.44
142 14 0.10
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (140 bp):
CATGTCCCAGACACGTCTTACACTGGCTATCTCCATCGAGGCCAATGCCATGTCCCAGACATGGT
CTTACACTAGATCTCATCTATAGCGCCGATGCATATCCCAAACATGTCTTACACTAGCACGAAAC
TTAGCCGATG
Found at i:24878592 original size:94 final size:92
Alignment explanation
Indices: 24878349--24878660 Score: 335
Period size: 94 Copynumber: 3.3 Consensus size: 92
24878339 ATCGAGGCCA
* * * * * * *
24878349 ATGCCATGTCCCAGACATGGTCTTACACTAGTTCTCGTGTATATGT-GCTGATGTATATCCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATC--ATA-ATGTGGCTGATGCATGTCCCAGA
* *
24878413 CATGTCTTACACTAGCACGAAACT-TAGCCG
63 CATGTCTTACACTAGCAC-TATCTCTAGCCG
* * *
24878443 ATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-GTGGCTGATGCATGTCCCAGACA
*
24878506 TGTCTTACACTAGCATTCATCTCTACGCCG
65 TGTCTTACACTAGCACT-ATCTCTA-GCCG
* *
24878536 ATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAGACAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAGACAT
* *
24878601 GTCTTACACTAGCCCTAGTCTCAATGCCG
66 GTCTTACACTAGCACTA-TCTCTA-GCCG
* * *
24878630 GTTCCATGTCCCAGACATGGTCTTATACTGG
1 ATGCCATGTCCCAGACATGGTCTTACACTGG
24878661 TTCTCACATA
Statistics
Matches: 184, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
89 2 0.01
90 2 0.01
91 35 0.19
92 16 0.09
93 21 0.11
94 87 0.47
95 21 0.11
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAGACAT
GTCTTACACTAGCACTATCTCTAGCCG
Found at i:24885662 original size:39 final size:39
Alignment explanation
Indices: 24885563--24885701 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
24885553 ATCGTGATTT
* * *
24885563 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAATA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATA
* * *
24885602 GAA-CCCAAAGGCTAACTGAAGCACACAAGTGTTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATA
* *
24885640 AAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATA
24885679 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
24885702 TCATCAGAGC
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 31 0.36
39 56 0.64
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATA
Found at i:24888803 original size:45 final size:46
Alignment explanation
Indices: 24888684--24888804 Score: 165
Period size: 48 Copynumber: 2.6 Consensus size: 46
24888674 TACCACGGTT
*
24888684 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGG--ATACCACGATTACACATATTG
* *
24888732 ATACATGTAACGTGGTGCTAAGTGGATGCCAC-AGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATACCACGA-TTACACATATTG
*
24888778 ATTCAT-TAACGTGGTGCTAAGTGGATA
1 ATACATGTAACGTGGTGCTAAGTGGATA
24888805 TACCACGGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
45 21 0.31
46 22 0.33
48 24 0.36
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (46 bp):
ATACATGTAACGTGGTGCTAAGTGGATACCACGATTACACATATTG
Found at i:24888843 original size:38 final size:38
Alignment explanation
Indices: 24888784--24888860 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
24888774 ATTGATTCAT
* * *
24888784 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACATGGTGCTAAGTAGATATACCACAGTTAAACATG
* *
24888822 TAACATGGTGCTAAGTAGATATGCCACAGTTATACATG
1 TAACATGGTGCTAAGTAGATATACCACAGTTAAACATG
24888860 T
1 T
24888861 TAATTTAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (38 bp):
TAACATGGTGCTAAGTAGATATACCACAGTTAAACATG
Found at i:24888892 original size:131 final size:131
Alignment explanation
Indices: 24888658--24888895 Score: 311
Period size: 131 Copynumber: 1.8 Consensus size: 131
24888648 ATGAAAAACT
* * * *
24888658 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTA
1 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTAGATATACCACGATTA
** * *
24888723 CACATATTGATACATGTAACGTGGTGCTAAGTGGATGCCACAGTTACATATATTGATTCATTAAC
66 CACATATTGATACATAAAAAGTGGCGCTAAGTGGATGCCACAGTTACATATATTGATTCATTAAC
24888788 G
131 G
*
24888789 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTAGATATGCCAC-AGTT
1 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTAGATATACCACGA-TT
* * **
24888853 ATACATGTT-A-ATTTAAAAAGTGGCGCTAAGTGCGTATGCCACA
65 ACACATATTGATACATAAAAAGTGGCGCTAAGTG-G-ATGCCACA
24888896 ATCACATGTT
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
129 16 0.18
130 3 0.03
131 72 0.79
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (131 bp):
TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTAGATATACCACGATTA
CACATATTGATACATAAAAAGTGGCGCTAAGTGGATGCCACAGTTACATATATTGATTCATTAAC
G
Found at i:24890326 original size:25 final size:25
Alignment explanation
Indices: 24890298--24890347 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
24890288 ATTAGTTAAG
24890298 TTGTCCAAATATTTTCAAAGTTCTT
1 TTGTCCAAATATTTTCAAAGTTCTT
24890323 TTGTCCAAATATTTTCAAAGTTCTT
1 TTGTCCAAATATTTTCAAAGTTCTT
24890348 GATTTAGTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (25 bp):
TTGTCCAAATATTTTCAAAGTTCTT
Found at i:24891832 original size:5 final size:5
Alignment explanation
Indices: 24891822--24891859 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
24891812 ATTCATTTAA
*
24891822 ATAAT ATAAT ATAAT ATAAT ATAAT ACTAAA ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT A-TAAT ATAAT AT
24891860 TATTTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:24893231 original size:26 final size:26
Alignment explanation
Indices: 24893195--24893301 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 26
24893185 TGATACAAAT
24893195 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
24893221 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
24893247 TG---ATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
24893270 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
24893296 TGATAA
1 TGATAA
24893302 GAATTTCATG
Statistics
Matches: 76, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
23 21 0.28
26 55 0.72
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:24893260 original size:49 final size:49
Alignment explanation
Indices: 24893203--24893299 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
24893193 ATTGATAATA
24893203 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATG
1 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATG
* * *
24893252 GGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCATGAT
1 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGAT
24893300 AAGAATTTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (49 bp):
GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATG
Found at i:24899008 original size:26 final size:26
Alignment explanation
Indices: 24898972--24899078 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
24898962 TGATACAAAT
24898972 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
24898998 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
24899024 TG---ATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
24899047 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
24899073 TGATAA
1 TGATAA
24899079 GAATTTCATG
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
23 21 0.28
26 54 0.72
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:24899052 original size:49 final size:49
Alignment explanation
Indices: 24898980--24899076 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 49
24898970 ATTGATAATA
24898980 GGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATG
1 GGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATG
* *
24899029 GGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCATGAT
1 GGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGAT
24899077 AAGAATTTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.38
Consensus pattern (49 bp):
GGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATG
Found at i:24907236 original size:29 final size:28
Alignment explanation
Indices: 24907187--24907256 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
24907177 ACGATGTTAG
* *
24907187 CTTGTGTAAGCAAATTTATAAAATGTCAA
1 CTTGTGTGAGCAAATTCAT-AAATGTCAA
* *
24907216 CTTGTGTGAG-AAGATTCATAAGTGTCAG
1 CTTGTGTGAGCAA-ATTCATAAATGTCAA
*
24907244 CTTGTATGAGCAA
1 CTTGTGTGAGCAA
24907257 CCCTGACCAC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
28 18 0.53
29 16 0.47
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (28 bp):
CTTGTGTGAGCAAATTCATAAATGTCAA
Found at i:24908736 original size:98 final size:98
Alignment explanation
Indices: 24908565--24908743 Score: 295
Period size: 98 Copynumber: 1.8 Consensus size: 98
24908555 CCAAATTGAA
* * *
24908565 TATTAAGTTTAGCTATTTCCAAAATTTAATGCGACAAACATATTATCACGTGTGAAATACCATGT
1 TATTAAGTTTAACTATTTCCAAAATTTAATGCGACAAACATATTATCACATGTGAAATACCACGT
* *
24908630 CAATTTATTGTTTCCAAAATTGGATATTAAGTT
66 CAACTTATTATTTCCAAAATTGGATATTAAGTT
* *
24908663 TATTAAGTTTAACTATTTCCAAAATTTAATGTGACAAACATATTATCATATGTGAAATACCACGT
1 TATTAAGTTTAACTATTTCCAAAATTTAATGCGACAAACATATTATCACATGTGAAATACCACGT
24908728 CAACTTATTATTTCCA
66 CAACTTATTATTTCCA
24908744 CATATTAGTC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 74 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.39
Consensus pattern (98 bp):
TATTAAGTTTAACTATTTCCAAAATTTAATGCGACAAACATATTATCACATGTGAAATACCACGT
CAACTTATTATTTCCAAAATTGGATATTAAGTT
Found at i:24915378 original size:83 final size:83
Alignment explanation
Indices: 24915216--24915380 Score: 231
Period size: 83 Copynumber: 2.0 Consensus size: 83
24915206 GTTATATTTT
* * * *
24915216 AGTTACTTATGTTATCGTTTTGTTACGAAGTAGTCACTCTACCGTTAAGCTCCGTTACCTCCCTA
1 AGTTACTTAGGTTATCGTTTTGTTACAAAATAGTCACTCTACCGTTAAACTCCGTTACCTCCCTA
* * *
24915281 TTGGTGGTCCTACGTGGC
66 ATGATAGTCCTACGTGGC
* * *
24915299 AGTTACTTAGGTTATTGTTTTGTTACAAAATGGTCACTCTACCGTTAAACTCCGTTATCTCCCTA
1 AGTTACTTAGGTTATCGTTTTGTTACAAAATAGTCACTCTACCGTTAAACTCCGTTACCTCCCTA
*
24915364 ATGATAGTCTTACGTGG
66 ATGATAGTCCTACGTGG
24915381 TAGTCCAAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
83 71 1.00
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (83 bp):
AGTTACTTAGGTTATCGTTTTGTTACAAAATAGTCACTCTACCGTTAAACTCCGTTACCTCCCTA
ATGATAGTCCTACGTGGC
Found at i:24917015 original size:2 final size:2
Alignment explanation
Indices: 24917008--24917035 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
24916998 ATGAATTTGC
24917008 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24917036 GTGTGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24917040 original size:2 final size:2
Alignment explanation
Indices: 24917035--24917059 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24917025 TATATATATA
24917035 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
24917060 ATGACAGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:24918785 original size:22 final size:22
Alignment explanation
Indices: 24918759--24918805 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
24918749 TTGAAGATCC
24918759 GTAATCTT-AGAAGATTTGATTT
1 GTAATCTTAAG-AGATTTGATTT
*
24918781 GTAATCTTAAGATATTTGATTT
1 GTAATCTTAAGAGATTTGATTT
24918803 GTA
1 GTA
24918806 GATTGCCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.32, C:0.04, G:0.17, T:0.47
Consensus pattern (22 bp):
GTAATCTTAAGAGATTTGATTT
Found at i:24920721 original size:14 final size:15
Alignment explanation
Indices: 24920686--24920727 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
24920676 AGCTTAATTT
*
24920686 TTTG-TTAATTAAGT
1 TTTGATTAATTAAGA
*
24920700 TTTAATTAATTAA-A
1 TTTGATTAATTAAGA
24920714 TTTGATTAATTAAG
1 TTTGATTAATTAAG
24920728 TTTAAGTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 15 0.65
15 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (15 bp):
TTTGATTAATTAAGA
Found at i:24926463 original size:2 final size:2
Alignment explanation
Indices: 24926456--24926492 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
24926446 TATTATGTAT
24926456 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24926493 GTAATGGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24936307 original size:18 final size:18
Alignment explanation
Indices: 24936279--24936340 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
24936269 TATTACGGCG
* *
24936279 AACTGTGTTAATTTGGTA
1 AACTGTATTAATTTGGCA
* *
24936297 ACCTGTATTAATATGGCA
1 AACTGTATTAATTTGGCA
* *
24936315 AACTGCATTAATTTGTCA
1 AACTGTATTAATTTGGCA
24936333 AACTGTAT
1 AACTGTAT
24936341 ATTGTGACTT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (18 bp):
AACTGTATTAATTTGGCA
Found at i:24937059 original size:17 final size:17
Alignment explanation
Indices: 24937014--24937065 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
24937004 TGTTAAATTG
* *
24937014 TATGAATTGTTATTTCA
1 TATGAATTGATATTTTA
***
24937031 TATGAGCAGATATTTTA
1 TATGAATTGATATTTTA
*
24937048 TATGAATTGATAATTTA
1 TATGAATTGATATTTTA
24937065 T
1 T
24937066 GTGATCTGCT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.48
Consensus pattern (17 bp):
TATGAATTGATATTTTA
Found at i:24938980 original size:5 final size:5
Alignment explanation
Indices: 24938946--24938978 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
24938936 ACCCCTGGCC
24938946 CTTTT CTTTT CTTTT CTTTT CTTTT -TTTT -TTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
24938979 TTGTAAAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.29
5 20 0.71
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (5 bp):
CTTTT
Found at i:24939836 original size:2 final size:2
Alignment explanation
Indices: 24939829--24939865 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
24939819 TTTATTTCTT
24939829 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24939866 TTTGAATCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24940243 original size:43 final size:43
Alignment explanation
Indices: 24940181--24940278 Score: 160
Period size: 43 Copynumber: 2.3 Consensus size: 43
24940171 CGCTATATGC
* * *
24940181 AACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCA
1 AACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTCTCACA
*
24940224 AACGCCGCTAAAGATCATGACCTTTAGCGGCACTTTTCTCACA
1 AACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTCTCACA
24940267 AACGCCGCTAAA
1 AACGCCGCTAAA
24940279 AATAATGATC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (43 bp):
AACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTCTCACA
Found at i:24940337 original size:22 final size:20
Alignment explanation
Indices: 24940295--24940357 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 20
24940285 GATCTTAAAA
24940295 AAATAAT-TTTATTTTAATT
1 AAATAATATTTATTTTAATT
*
24940314 AAATAATATTTATTTCTATGTT
1 AAATAATATTTATTT-TA-ATT
*
24940336 AAATATTATATTATGTTTAATT
1 AAATAATAT-TTAT-TTTAATT
24940358 TTTGAAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
19 7 0.19
20 7 0.19
21 2 0.06
22 12 0.33
23 6 0.17
24 2 0.06
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.56
Consensus pattern (20 bp):
AAATAATATTTATTTTAATT
Found at i:24940627 original size:17 final size:18
Alignment explanation
Indices: 24940600--24940633 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
24940590 ATGCCAAAAT
24940600 GTTGAACTCCATATTCCA
1 GTTGAACTCCATATTCCA
24940618 GTTG-ACTCCATATTCC
1 GTTGAACTCCATATTCC
24940634 CCACAAGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (18 bp):
GTTGAACTCCATATTCCA
Found at i:24954020 original size:42 final size:42
Alignment explanation
Indices: 24953933--24954021 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 42
24953923 CTTTTCCTTG
*
24953933 TCTTCTGGATGTGGTTTAGTGCCATACTCAGGCTTCCCTTCC
1 TCTTCTGGATGTGGTTTAGTGCCATACTCAGGCTTCCCTGCC
* * * *
24953975 TCTTCTGGCTGTGGGTTT-GTGCTATAAC-CAGGCTTCTCTGGC
1 TCTTCTGGATGT-GGTTTAGTGCCAT-ACTCAGGCTTCCCTGCC
24954017 TCTTC
1 TCTTC
24954022 AGGCGTTGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 33 0.82
43 7 0.17
ACGTcount: A:0.10, C:0.27, G:0.24, T:0.39
Consensus pattern (42 bp):
TCTTCTGGATGTGGTTTAGTGCCATACTCAGGCTTCCCTGCC
Found at i:24956176 original size:23 final size:24
Alignment explanation
Indices: 24956149--24956198 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
24956139 TTGTTATGTC
*
24956149 TTATGTTACTATATA-TTTTTTTA
1 TTATGTTACTATACATTTTTTTTA
24956172 TTATGTTACTATACATTTTTTTTA
1 TTATGTTACTATACATTTTTTTTA
24956196 TTA
1 TTA
24956199 AAAATCATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (24 bp):
TTATGTTACTATACATTTTTTTTA
Found at i:24956598 original size:21 final size:21
Alignment explanation
Indices: 24956573--24956628 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
24956563 CATCGCTATT
24956573 TCTAATCTCACCGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
24956594 TCTAATCTCACCGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
* *
24956615 ACTAATTTCACCGC
1 TCTAATCTCACCGC
24956629 CACTGCTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.29
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:24958220 original size:17 final size:17
Alignment explanation
Indices: 24958198--24958233 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
24958188 TCAAAGAAGT
24958198 AAAAAAAAAAAAAACAA
1 AAAAAAAAAAAAAACAA
*
24958215 AAAAAACAAAAAAACAA
1 AAAAAAAAAAAAAACAA
24958232 AA
1 AA
24958234 GTAAGATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAAACAA
Found at i:24959520 original size:30 final size:30
Alignment explanation
Indices: 24959485--24959541 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
24959475 AAATCTTACG
*
24959485 TTTTAATTAAATGAATTAAATAAGATACTA
1 TTTTAATCAAATGAATTAAATAAGATACTA
24959515 TTTTAATCAAATGAATTAAATAAGATA
1 TTTTAATCAAATGAATTAAATAAGATA
24959542 ATGTAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTAATCAAATGAATTAAATAAGATACTA
Found at i:24966427 original size:22 final size:21
Alignment explanation
Indices: 24966403--24966443 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
24966393 AGCATTTTTT
24966403 AATAA-TTTT-AATTTTTAAA
1 AATAATTTTTAAATTTTTAAA
24966422 AATAATTTTTAGAATTTTTAAA
1 AATAATTTTTA-AATTTTTAAA
24966444 TTAAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 4 0.21
22 10 0.53
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
AATAATTTTTAAATTTTTAAA
Found at i:24977180 original size:170 final size:170
Alignment explanation
Indices: 24976898--24977229 Score: 461
Period size: 170 Copynumber: 2.0 Consensus size: 170
24976888 ATCTTCAGCC
* * * * *
24976898 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTCCCAACTAATTTCCCTACTGCTTAGGGG
1 TGCTCCACTACTGCTTAGGAAGATAAAATCTATAATTCCCAACTAATTACCCTACTGCTTAGGGA
*
24976963 GATAAGGCTCACAGTCTTCAATCTGCTCCACTACTACTTAAGGAGATAAGATCTATAACCTTC-A
66 GATAAGGCTCACAGTATTCAATCTGCTCCACTACTACTTAAGGAGATAAGATCTATAA-CTTCTA
*
24977027 GCCTGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCGTCT
130 GCCTGTTACCCTACTGCTTAGGGGGATAAGGCTCACCGTCT
* * *
24977068 TGCTCCACTACTGCTTAGGAAGATAAAATCTATAATTTCCAGCCT-GTTACCCTACTGCTTAGGG
1 TGCTCCACTACTGCTTAGGAAGATAAAATCTATAATTCCCA-ACTAATTACCCTACTGCTTAGGG
* * ** * * * *
24977132 AGTTAAGGCTCACCGTATTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTA
65 AGATAAGGCTCACAGTATTCAATCTGCTCCACTACTACTTAAGGAGATAAGATCTATAACTTCTA
*
24977197 GCCTGTTACCCTACTGCTTAGGGGGTTAAGGCT
130 GCCTGTTACCCTACTGCTTAGGGGGATAAGGCT
24977230 TGCTGTTTTT
Statistics
Matches: 141, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
169 3 0.02
170 136 0.96
171 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (170 bp):
TGCTCCACTACTGCTTAGGAAGATAAAATCTATAATTCCCAACTAATTACCCTACTGCTTAGGGA
GATAAGGCTCACAGTATTCAATCTGCTCCACTACTACTTAAGGAGATAAGATCTATAACTTCTAG
CCTGTTACCCTACTGCTTAGGGGGATAAGGCTCACCGTCT
Found at i:24977211 original size:44 final size:43
Alignment explanation
Indices: 24976853--24977289 Score: 197
Period size: 44 Copynumber: 10.1 Consensus size: 43
24976843 TCTTTTCGAT
* * * *
24976853 CTGCTCTATTACTGCTTGGGGAGATATGATCTGTAATCTTCAGC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAGC
* *
24976897 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTCCCA-A
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT-TCAGC
** * * * **
24976940 CTAATTTCC-CTACTGCTTAGGGGGATAAG-GCT-CACAGTCTTCAAT
1 CT--GCTCCACTACTGCTTAGGGAGATAAGATCTGTA-A-T-TTCAGC
* * * *
24976985 CTGCTCCACTACTACTTAAGGAGATAAGATCTATAACCTTCAGC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGC
* * * * *
24977029 CTGTTTCC-CTACTGCTTAGGGGGATAAG-GC--TCA---CCGTC
1 CTG-CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAG-C
* * * *
24977067 TTGCTCCACTACTGCTTAGGAAGATAAAATCTATAATTTCCAGC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGC
* * * * * *
24977111 CTGTTACC-CTACTGCTTAGGGAGTTAAGGCTCACCGT-ATTTGA-T
1 CTGCT-CCACTACTGCTTAGGGAGATAA-GAT--CTGTAATTTCAGC
24977155 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTC-AGC
* * * * * * *
24977199 CTGTTACC-CTACTGCTTAGGGGGTTAAGGCTTGCTGT-TTTTGA-T
1 CTGCT-CCACTACTGCTTAGGGAGATAA-G-AT-CTGTAATTTCAGC
* *
24977243 CTACTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGC
24977287 CTG
1 CTG
24977290 TTGAAATACT
Statistics
Matches: 286, Mismatches: 71, Indels: 72
0.67 0.17 0.17
Matches are distributed among these distances:
37 5 0.02
38 20 0.07
39 1 0.00
41 11 0.04
42 9 0.03
43 19 0.07
44 184 0.64
45 22 0.08
46 9 0.03
47 6 0.02
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (43 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAGC
Found at i:24977318 original size:88 final size:88
Alignment explanation
Indices: 24976900--24977335 Score: 440
Period size: 88 Copynumber: 5.0 Consensus size: 88
24976890 CTTCAGCCTG
* * * *
24976900 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTCCCA-ACTAATTTCCCTACTGCTTAGGGGG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCT-GTTACCCTACTGCTTAGGGGG
* ** * * ** *
24976964 ATAAGGCTCACAGTCTTCAATCTG
65 TTAAGGCTTGCTGTATTTGATCTA
* * * * *
24976988 CTCCACTACTACTTAAGGAGATAAGATCTATAACCTT-CAGCCTGTTTCCCTACTGCTTAGGGGG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCCAGCCTGTTACCCTACTGCTTAGGGGG
* ** * *
24977052 ATAAGGCTCACCGT-CTTG-----
65 TTAAGGCTTGCTGTATTTGATCTA
* * * *
24977070 CTCCACTACTGCTTAGGAAGATAAAATCTATAATTTCCAGCCTGTTACCCTACTGCTTAGGGAGT
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGGGGT
** * *
24977135 TAAGGCTCACCGTATTTGATCTG
66 TAAGGCTTGCTGTATTTGATCTA
*
24977158 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCTACTGCTTAGGGGGT
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGGGGT
*
24977223 TAAGGCTTGCTGTTTTTGATCTA
66 TAAGGCTTGCTGTATTTGATCTA
* ** *
24977246 CTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTGA-AATACTACTTAGGGGG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTT-ACCCTACTGCTTAGGGGG
* *
24977310 TTAAGGCTTGCTATCTTTGATCTA
65 TTAAGGCTTGCTGTATTTGATCTA
24977334 CT
1 CT
24977336 ACTATTTAGG
Statistics
Matches: 301, Mismatches: 37, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
81 2 0.01
82 67 0.22
83 3 0.01
87 1 0.00
88 224 0.74
89 4 0.01
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.32
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGGGGT
TAAGGCTTGCTGTATTTGATCTA
Found at i:24977587 original size:132 final size:133
Alignment explanation
Indices: 24977413--24977709 Score: 425
Period size: 133 Copynumber: 2.2 Consensus size: 133
24977403 GCCATTTCTG
* * * * *
24977413 ATCTGCTCCATAGCCAATACATGGAGATAAAATCTGTAATTTTCAGTCTGTTACCCTACTGCTTA
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCCGTTACCCTACTGCTTA
*
24977478 -GGGGGTTAAGGCTCGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCCGATAGCT
66 GGGGGGTTAAGGCTCGCATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCCGATAGCT
24977542 AAA
131 AAA
* * * * *
24977545 ATCTACTCTATAGCCGATACATAGAGATAAGTTCTGTAATTTTTAGCCCGTTACCGTACTGCTTA
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCCGTTACCCTACTGCTTA
* * * * *
24977610 GGGGGGTTAAGGCTTGCATCTTCAACCTGCTCTCTTTCTACCTCAGAGAGATAAGGCCGGTGGCT
66 GGGGGGTTAAGGCTCGCATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCCGATAGCT
24977675 AAA
131 AAA
**
24977678 ATCTTTTCCATAGCCGATACATGGAGATAAGA
1 ATCTACTCCATAGCCGATACATGGAGATAAGA
24977710 CTTGTAACAG
Statistics
Matches: 143, Mismatches: 21, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
132 55 0.38
133 88 0.62
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (133 bp):
ATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCCGTTACCCTACTGCTTA
GGGGGGTTAAGGCTCGCATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCCGATAGCT
AAA
Found at i:24979224 original size:28 final size:28
Alignment explanation
Indices: 24979187--24979285 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
24979177 GCAATCAAAT
*
24979187 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
24979215 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
24979243 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
*
24979271 ATGACACTTAGTGTA
1 ATGGCACTTAGTGTA
24979286 AAATATCGAA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:24981302 original size:28 final size:28
Alignment explanation
Indices: 24981271--24981482 Score: 163
Period size: 28 Copynumber: 7.5 Consensus size: 28
24981261 GTGAACATAG
*
24981271 GCACTGTGTGTGTGAGTTCCGTAATCGA
1 GCACTGTGTGTGCGAGTTCCGTAATCGA
* * ** *
24981299 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAATCGA
* * *
24981327 GGCACTGTGTGTGCGAGTTCCATAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAATCGA
* * ** *
24981356 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAATCGA
* * *
24981384 GGCACTATGTGTGCGAGTTTCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAATCGA
* * ** *
24981413 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAATCGA
* * * *
24981441 GGCACTGTGCGTGTGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAATCGA
24981470 GCACTGTGTGTGC
1 GCACTGTGTGTGC
24981483 AAGATCGGTT
Statistics
Matches: 132, Mismatches: 49, Indels: 6
0.71 0.26 0.03
Matches are distributed among these distances:
28 73 0.55
29 59 0.45
ACGTcount: A:0.17, C:0.19, G:0.34, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAATCGA
Found at i:24981338 original size:29 final size:29
Alignment explanation
Indices: 24981299--24981503 Score: 148
Period size: 29 Copynumber: 7.2 Consensus size: 29
24981289 CCGTAATCGA
24981299 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* ** **** *
24981328 GCACTGTGTGTGCGAGTTC-CATAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
24981356 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
24981385 GCACTATGTGTGCGAGTTTC-GTAACCGA-
1 GCACTGTGTGTGCGAG-ATCGGTTGTTGAG
24981413 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * * **** *
24981442 GCACTGTGCGTGTGAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
24981470 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
24981499 GCACT
1 GCACT
24981504 AAATGTAGCA
Statistics
Matches: 123, Mismatches: 48, Indels: 10
0.68 0.27 0.06
Matches are distributed among these distances:
27 2 0.02
28 57 0.46
29 62 0.50
30 2 0.02
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:24981338 original size:57 final size:57
Alignment explanation
Indices: 24981269--24981503 Score: 371
Period size: 57 Copynumber: 4.1 Consensus size: 57
24981259 AAGTGAACAT
* * *
24981269 AGGCACTGTGTGTGTGAGTTCCGTAATCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
24981326 AGGCACTGTGTGTGCGAGTTCCATAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
24981383 AGGCACTATGTGTGCGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
24981440 AGGCACTGTGCGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
24981497 GGGCACT
1 AGGCACT
24981504 AAATGTAGCA
Statistics
Matches: 163, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 163 1.00
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:24982469 original size:136 final size:136
Alignment explanation
Indices: 24982237--24982644 Score: 744
Period size: 136 Copynumber: 3.0 Consensus size: 136
24982227 GCCCATTCAG
* * *
24982237 GTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCGTAGCCCCTTATTC
1 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
24982302 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
24982367 ATTTGC
131 ATTTGC
24982373 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
1 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
*
24982438 AGATAACAGTATGACCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
*
24982503 ATTTGG
131 ATTTGC
*
24982509 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGACCCTTATTC
1 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
*
24982574 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AACATATGCAAGCC
24982639 CATTTG
130 CATTTG
24982645 GGGAGACTAC
Statistics
Matches: 263, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
136 243 0.92
137 20 0.08
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
ATTTGC
Found at i:24984466 original size:26 final size:26
Alignment explanation
Indices: 24984430--24984539 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
24984420 CATGAAATTC
24984430 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAAACCA
*
24984456 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCA
* * *
24984482 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAAACCA
*
24984508 TTATCATGGAACATTTACCT-AACTCA
1 TTATCATGAAACATTTACCTAAAC-CA
24984534 TTATCA
1 TTATCA
24984540 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
25 2 0.03
26 75 0.97
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAAACCA
Found at i:24984509 original size:52 final size:52
Alignment explanation
Indices: 24984430--24984539 Score: 175
Period size: 52 Copynumber: 2.1 Consensus size: 52
24984420 CATGAAATTC
24984430 TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
* * * * *
24984482 TTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACTCA
1 TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
24984534 TTATCA
1 TTATCA
24984540 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
Found at i:24989845 original size:28 final size:28
Alignment explanation
Indices: 24989808--24989914 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
24989798 GCAATCAAAT
*
24989808 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
24989836 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
24989864 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
24989892 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
24989915 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:24991994 original size:131 final size:131
Alignment explanation
Indices: 24991859--24992105 Score: 336
Period size: 131 Copynumber: 1.9 Consensus size: 131
24991849 ATATAAATGG
* *
24991859 AATTTTGAAGGGA-AGCCCAATAATTTTAAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCA
1 AATTTCGAAGGGATA-CCCAATAATTTCAAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCA
*
24991923 CGATTCCGCGAATTGCCAAACATC-AAACCTCGTCTTCGTTTTGAGGAATTTTAAAAGGCGTGAG
65 CGATTCCGCGAATTGCCAAACATCGAAACC-CGTCTTCGTTTTGAAGAATTTTAAAAGGCGTGAG
24991987 TGA
129 TGA
* ** * * *** * *
24991990 AATTTCGAAGTGATATTCGATTATTTCAAGCAAACGTGGAATTGCAACCCAACGCGTTAGGGTAC
1 AATTTCGAAGGGATACCCAATAATTTCAAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCAC
*
24992055 GATTCCGCGAATTGCCAAACATCGAATCCCGTCTTCGTTTTGAAGAATTTT
66 GATTCCGCGAATTGCCAAACATCGAAACCCGTCTTCGTTTTGAAGAATTTT
24992106 TGAATGAGTA
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
131 95 0.95
132 5 0.05
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (131 bp):
AATTTCGAAGGGATACCCAATAATTTCAAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCAC
GATTCCGCGAATTGCCAAACATCGAAACCCGTCTTCGTTTTGAAGAATTTTAAAAGGCGTGAGTG
A
Found at i:24993485 original size:11 final size:11
Alignment explanation
Indices: 24993459--24993488 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
24993449 AACACGAATT
*
24993459 AAAAGGAAAAA
1 AAAATGAAAAA
24993470 AAAATGAAAAA
1 AAAATGAAAAA
24993481 AAAATGAA
1 AAAATGAA
24993489 GGAGAAGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (11 bp):
AAAATGAAAAA
Found at i:24995138 original size:132 final size:132
Alignment explanation
Indices: 24994940--24995462 Score: 850
Period size: 132 Copynumber: 4.0 Consensus size: 132
24994930 ACTTTGATTT
* * * * *
24994940 TGCTCCACTGCAACTTCAGGGAAA-CAGGATCTGAAATTTCAGCCTACTTCACTACAACTTTAGG
1 TGCTCCACTGCAACTTCAGGGAAATGA-GATCTAAAATTTCAACCTACTCCACTACAACCTTAGG
* *
24995004 GAGCTAGGTTGGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTCG
65 GAGCTAGGTTAGTGACTTAAATCTGCTTCACCGCAACTTCAGGAAGTCAAGATTCGTCGTCTTCG
24995069 ATC
130 ATC
* *
24995072 TGCTGCACTGCAACTTCAGGGAAATGAGATCTAAAATTTCAGCCTACTCCACTACAACCTTAGGG
1 TGCTCCACTGCAACTTCAGGGAAATGAGATCTAAAATTTCAACCTACTCCACTACAACCTTAGGG
*
24995137 AGCTAGGTTAGTGACTTAAATCTGTTTCACCGCAACTTCAGGAAGTCAAGATTCGTCGTCTTCGA
66 AGCTAGGTTAGTGACTTAAATCTGCTTCACCGCAACTTCAGGAAGTCAAGATTCGTCGTCTTCGA
24995202 TC
131 TC
**
24995204 TGCTCCACTATAACTTCAGGGAAATGAGATCTAAAATTTCAACCTACTCCACTACAACCTTAGGG
1 TGCTCCACTGCAACTTCAGGGAAATGAGATCTAAAATTTCAACCTACTCCACTACAACCTTAGGG
24995269 AGCTAGGTTAGTGACTTAAATCTGCTTCACCGCAACTTCAGGAAGTCAAGATTCGTCGTCTTCGA
66 AGCTAGGTTAGTGACTTAAATCTGCTTCACCGCAACTTCAGGAAGTCAAGATTCGTCGTCTTCGA
24995334 TC
131 TC
** * *
24995336 TGCTCCACTGCAACTTCAGGGAAACAAGATTTAAAATTTCAACCTACTCCACTACAATCTTAGGG
1 TGCTCCACTGCAACTTCAGGGAAATGAGATCTAAAATTTCAACCTACTCCACTACAACCTTAGGG
* ** *
24995401 AGCTAGGTTAGTGACTTAAATCTACTTCACTACAACTTCAGGAAGCCAAGATTCGTCGTCTT
66 AGCTAGGTTAGTGACTTAAATCTGCTTCACCGCAACTTCAGGAAGTCAAGATTCGTCGTCTT
24995463 GCCACACCAT
Statistics
Matches: 367, Mismatches: 23, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
132 366 1.00
133 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (132 bp):
TGCTCCACTGCAACTTCAGGGAAATGAGATCTAAAATTTCAACCTACTCCACTACAACCTTAGGG
AGCTAGGTTAGTGACTTAAATCTGCTTCACCGCAACTTCAGGAAGTCAAGATTCGTCGTCTTCGA
TC
Found at i:24995352 original size:45 final size:45
Alignment explanation
Indices: 24995023--24995355 Score: 145
Period size: 45 Copynumber: 7.5 Consensus size: 45
24995013 TGGTGACTTA
*
24995023 AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
* * * * **
24995068 GATCTGCTGCACTGCAACTTCAGGGAAAT-GAGA-TC-TAAAAT-TTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGTCAAGATTCGT--CGTCTTC
** * * * * * * * *
24995112 AGCCTACTCCACTACAACCTT-AGGGAG-CTAGGTTAGT-GACTTA
1 AATCTGCTCCACTGCAA-CTTCAGGAAGTCAAGATTCGTCGTCTTC
* * *
24995155 AATCTGTTTCACCGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
* ** * * **
24995200 GATCTGCTCCACTATAACTTCAGGGAAAT-GAGA-TC-TAAAAT-TTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGTCAAGATTCGT--CGTCTTC
* * * * * * * * *
24995244 AACCTACTCCACTACAACCTT-AGGGAG-CTAGGTTAGT-GACTTA
1 AATCTGCTCCACTGCAA-CTTCAGGAAGTCAAGATTCGTCGTCTTC
* *
24995287 AATCTGCTTCACCGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
*
24995332 GATCTGCTCCACTGCAACTTCAGG
1 AATCTGCTCCACTGCAACTTCAGG
24995356 GAAACAAGAT
Statistics
Matches: 197, Mismatches: 69, Indels: 44
0.64 0.22 0.14
Matches are distributed among these distances:
42 6 0.03
43 48 0.24
44 52 0.26
45 81 0.41
46 10 0.05
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
Found at i:25007354 original size:131 final size:131
Alignment explanation
Indices: 25007202--25007484 Score: 338
Period size: 131 Copynumber: 2.2 Consensus size: 131
25007192 GCCGAATATT
* * * * * *
25007202 GTCTTCGTTTT-AAAAATTTTTAGAAGATATGAATGGAATTTTGAAGGGA-AGCCCGATTATTTT
1 GTCTTCGTTTTGAAGAA-TTTTAAAAGACATGAATGAAATTTCGAAGGGATA-CCCGATTATTTC
*
25007265 AAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCACAATTCCGCGAATTGCCAAACATC-AAA
64 AAGCAAACGCAAAATTGCAACCCAACACATTAGGGCACAATTCCGCGAATTGCCAAACATCGAAA
25007329 CCTC
129 CC-C
* * * * * **
25007333 GTCTTCGTTTTGAGGAATTTTAAAAGGCGTGAGTGAAATTTCGAAGTGATATTCGATTATTTCAA
1 GTCTTCGTTTTGAAGAATTTTAAAAGACATGAATGAAATTTCGAAGGGATACCCGATTATTTCAA
* * * *
25007398 GCAAACGCAGAATTGCAACCCAACGCATTAGGGCACGATTCCGCGAATTGCCAAACATCGAATCC
66 GCAAACGCAAAATTGCAACCCAACACATTAGGGCACAATTCCGCGAATTGCCAAACATCGAAACC
25007463 C
131 C
* *
25007464 TTCTTTGTTTTGAAGAATTTT
1 GTCTTCGTTTTGAAGAATTTT
25007485 TGAATGAGTA
Statistics
Matches: 128, Mismatches: 21, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
131 120 0.94
132 8 0.06
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (131 bp):
GTCTTCGTTTTGAAGAATTTTAAAAGACATGAATGAAATTTCGAAGGGATACCCGATTATTTCAA
GCAAACGCAAAATTGCAACCCAACACATTAGGGCACAATTCCGCGAATTGCCAAACATCGAAACC
C
Found at i:25008860 original size:12 final size:12
Alignment explanation
Indices: 25008843--25008867 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25008833 AATTAAAAGG
25008843 AAAAAAAAATGA
1 AAAAAAAAATGA
25008855 AAAAAAAAATGA
1 AAAAAAAAATGA
25008867 A
1 A
25008868 GGAGAAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAAAAAATGA
Found at i:25010825 original size:44 final size:45
Alignment explanation
Indices: 25010647--25010873 Score: 139
Period size: 45 Copynumber: 5.1 Consensus size: 45
25010637 CTTAGGGGGT
*
25010647 TAAGACTTGTG-GCTAAAATCTGCTCCATAGCCGATA-ATGGAGA
1 TAAGACTTGTGATCTAAAATCTGCTCCATAGCCGATACATGGAGA
* ** * ** *
25010690 TAAGACTCGCCATTTTCAATCTACTCCATAGCCGATACATGGAGA
1 TAAGACTTGTGATCTAAAATCTGCTCCATAGCCGATACATGGAGA
* * ** * * *
25010735 TAAGATCTT-TAATTTTTAGTCTGCTTCC-TTG-C--TACCTCAGGAAGA
1 TAAGA-CTTGTGATCTAAAATCTGC-TCCATAGCCGATACAT--GG-AGA
*
25010780 TAAGACTTGTGA-CTAAAATCTGCTCCATAGCTGATACATGGAGA
1 TAAGACTTGTGATCTAAAATCTGCTCCATAGCCGATACATGGAGA
* * *** *
25010824 TAAGACTCGCT-ATTTCTGATCTGCTCCATAGCCGATACATAGAGA
1 TAAGACTTG-TGATCTAAAATCTGCTCCATAGCCGATACATGGAGA
25010869 TAAGA
1 TAAGA
25010874 TCTGTAATTT
Statistics
Matches: 139, Mismatches: 31, Indels: 26
0.71 0.16 0.13
Matches are distributed among these distances:
42 4 0.03
43 11 0.08
44 47 0.34
45 68 0.49
46 5 0.04
47 4 0.03
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30
Consensus pattern (45 bp):
TAAGACTTGTGATCTAAAATCTGCTCCATAGCCGATACATGGAGA
Found at i:25010859 original size:134 final size:132
Alignment explanation
Indices: 25010559--25010883 Score: 420
Period size: 132 Copynumber: 2.4 Consensus size: 132
25010549 AGGGTGTTAC
* * *
25010559 AAGACTCGCCATTTCTGATCTGCTCCATAACCAATACATGGAGATAGGATCTGTAATTTTCAGCC
1 AAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCC
* * ** * *
25010624 CGTTACCCTACTGCTTAGGGGGTTAAGACTTGTGGCTAAAATCTGCTCCATAGCCGATAATGGAG
66 CGTTACCCTACTCCTCAGGAAGATAAGACTTGTGACTAAAATCTGCTCCATAGCCGATAATGGAG
25010689 AT
131 AT
* * * * *
25010691 AAGACTCGCCATTT-TCAATCTACTCCATAGCCGATACATGGAGATAAGATCTTTAATTTTTAGT
1 AAGACTCGCCATTTCT-GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGC
* * * *
25010755 CTGCTT-CCTTGCTACCTCAGGAAGATAAGACTTGTGACTAAAATCTGCTCCATAGCTGATACAT
65 CCG-TTACCCTACT-CCTCAGGAAGATAAGACTTGTGACTAAAATCTGCTCCATAGCCGATA-AT
25010819 GGAGAT
127 GGAGAT
* *
25010825 AAGACTCGCTATTTCTGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTT
1 AAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTT
25010884 CACCGATGTC
Statistics
Matches: 165, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
131 1 0.01
132 61 0.37
133 42 0.25
134 60 0.36
135 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (132 bp):
AAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCC
CGTTACCCTACTCCTCAGGAAGATAAGACTTGTGACTAAAATCTGCTCCATAGCCGATAATGGAG
AT
Found at i:25012639 original size:5 final size:6
Alignment explanation
Indices: 25012621--25012656 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
25012611 TCTCTTCTTG
**
25012621 TTGTTT TTGTTT TTGTTT TTGTTT TCCTTT TTGTTT
1 TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT
25012657 CTTTCTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.06, G:0.14, T:0.81
Consensus pattern (6 bp):
TTGTTT
Found at i:25015368 original size:19 final size:19
Alignment explanation
Indices: 25015344--25015389 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
25015334 TGTGAAGTTT
*
25015344 AATGCACATG-ATGCAATG
1 AATGCAAATGCATGCAATG
*
25015362 CAATGCAAATGCATGGAATG
1 -AATGCAAATGCATGCAATG
25015382 AATGCAAA
1 AATGCAAA
25015390 AGAAAGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGCAATG
Found at i:25022537 original size:16 final size:16
Alignment explanation
Indices: 25022516--25022550 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
25022506 CACACCGGCG
25022516 CAAGGCCTGCTAGACT
1 CAAGGCCTGCTAGACT
25022532 CAAGGCCTGCTAGACT
1 CAAGGCCTGCTAGACT
25022548 CAA
1 CAA
25022551 AGTCTGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.31, G:0.23, T:0.17
Consensus pattern (16 bp):
CAAGGCCTGCTAGACT
Found at i:25022997 original size:12 final size:12
Alignment explanation
Indices: 25022980--25023004 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25022970 AAATTAAACT
25022980 TATTCAATCAAA
1 TATTCAATCAAA
25022992 TATTCAATCAAA
1 TATTCAATCAAA
25023004 T
1 T
25023005 TCATCCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (12 bp):
TATTCAATCAAA
Found at i:25026389 original size:15 final size:16
Alignment explanation
Indices: 25026368--25026410 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
25026358 GACGTGGGTG
25026368 GAAAATAAAATTAT-A
1 GAAAATAAAATTATAA
* * *
25026383 TAAAATATATTTATAA
1 GAAAATAAAATTATAA
25026399 GAAAATAAAATT
1 GAAAATAAAATT
25026411 TTAATTGAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (16 bp):
GAAAATAAAATTATAA
Found at i:25027365 original size:51 final size:51
Alignment explanation
Indices: 25027309--25027435 Score: 200
Period size: 51 Copynumber: 2.5 Consensus size: 51
25027299 TACAAATCAA
* * *
25027309 ATCTCTAAGAATATAAAATCATATCTTCTAAGATTACGTATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
*
25027360 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* *
25027411 ATCTCTAAGATTATAATATAATATC
1 ATCTCTAAGAATATAAAATAATATC
25027436 ATATCATATC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 70 1.00
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.37
Consensus pattern (51 bp):
ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
Found at i:25027385 original size:22 final size:22
Alignment explanation
Indices: 25027309--25027385 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
25027299 TACAAATCAA
*
25027309 ATCTCTAAGAATATAAAATCAT
1 ATCTCTAAGAATATAAAATAAT
** *
25027331 ATCTTCTAAGATTACGTATCATATCTAAG
1 ATC-TCTAAGA--A--TAT-A-AAATAAT
25027360 ATCTCTAAGAATATAAAATAAT
1 ATCTCTAAGAATATAAAATAAT
25027382 ATCT
1 ATCT
25027386 TATAAGATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 11 0.27
23 8 0.20
24 3 0.07
25 1 0.02
26 1 0.02
27 3 0.07
28 8 0.20
29 6 0.15
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.35
Consensus pattern (22 bp):
ATCTCTAAGAATATAAAATAAT
Found at i:25027429 original size:29 final size:29
Alignment explanation
Indices: 25027351--25027435 Score: 76
Period size: 29 Copynumber: 3.2 Consensus size: 29
25027341 ATTACGTATC
* *
25027351 ATATCTAAGATCTCTAAGAATATAAAATA
1 ATATCTAAGATCTCTAAGATTATAATATA
* * *
25027380 ATATC-----T-TATAAGATT-TCATATC
1 ATATCTAAGATCTCTAAGATTATAATATA
25027402 ATATCTAAGATCTCTAAGATTATAATATA
1 ATATCTAAGATCTCTAAGATTATAATATA
25027431 ATATC
1 ATATC
25027436 ATATCATATC
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 1 0.02
27 1 0.02
28 8 0.20
29 15 0.37
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.38
Consensus pattern (29 bp):
ATATCTAAGATCTCTAAGATTATAATATA
Found at i:25027440 original size:39 final size:39
Alignment explanation
Indices: 25027395--25027474 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
25027385 TTATAAGATT
* *
25027395 TCATATCATATCTAAGATCTCTAAGATTATAATATAATA
1 TCATATCATATCTAAGATCTCCAAGATTATAAAATAATA
*
25027434 TCATATCATATCTAAGATCTCCAAGATTATAAAATCATA
1 TCATATCATATCTAAGATCTCCAAGATTATAAAATAATA
25027473 TC
1 TC
25027475 TTTTAAGATC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.36
Consensus pattern (39 bp):
TCATATCATATCTAAGATCTCCAAGATTATAAAATAATA
Found at i:25028330 original size:26 final size:26
Alignment explanation
Indices: 25028293--25028428 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
25028283 TGATACAAAT
* *
25028293 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25028319 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
25028345 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25028371 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25028397 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25028423 TGATAA
1 TGATAA
25028429 GAATTCATGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:25034149 original size:25 final size:26
Alignment explanation
Indices: 25034110--25034216 Score: 175
Period size: 25 Copynumber: 4.2 Consensus size: 26
25034100 TGATACAAAT
*
25034110 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
25034136 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
25034161 TGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
25034185 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
25034211 TGATAA
1 TGATAA
25034217 GAATTCATGT
Statistics
Matches: 78, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
24 11 0.14
25 50 0.64
26 17 0.22
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:25037447 original size:96 final size:96
Alignment explanation
Indices: 25037283--25037472 Score: 249
Period size: 96 Copynumber: 2.0 Consensus size: 96
25037273 GCTTCTTTTT
* * * *
25037283 GCTCCTTTTAGCCCTCTTGGCTTCGGCTTTACCTTTGCTTGAACCAAGCTTCTTGGGCTCCTTGT
1 GCTCCTTTTAGCCCTCTTGGCTTCGGCTTTACCTTTGCTCGAACCAAGCTTCCTGGGCTCCGTAT
* * *
25037348 CTGCTCCATCGTTCCCTTCGATGACAGACAA
66 CTGCTCCATCATTCCCATCGATAACAGACAA
* * *
25037379 GCTCCTCTTT-GCCCTTTTGGCTTCGGCTTT-TCTCTTGCTCGAACCAAGCTTCCTGGGCTTCGT
1 GCTCCT-TTTAGCCCTCTTGGCTTCGGCTTTACCT-TTGCTCGAACCAAGCTTCCTGGGCTCCGT
*
25037442 ATCTGCTCGATCATTCCCATCGATAACAGAC
64 ATCTGCTCCATCATTCCCATCGATAACAGAC
25037473 TTCCTCGGAC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
95 2 0.02
96 76 0.94
97 3 0.04
ACGTcount: A:0.14, C:0.33, G:0.18, T:0.35
Consensus pattern (96 bp):
GCTCCTTTTAGCCCTCTTGGCTTCGGCTTTACCTTTGCTCGAACCAAGCTTCCTGGGCTCCGTAT
CTGCTCCATCATTCCCATCGATAACAGACAA
Found at i:25039189 original size:51 final size:51
Alignment explanation
Indices: 25039131--25039317 Score: 266
Period size: 51 Copynumber: 3.7 Consensus size: 51
25039121 TACAAATCAA
* * *
25039131 ATCTCTAAGAATATAAAATCATATCTTCTAAGATTACGTATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* *
25039182 ATTTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* * * *
25039233 ATCTCTAAGATTATAATATAATATGTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* * *
25039284 ATCTCTAAGATTATAAAATCATATCTTTTAAGAT
1 ATCTCTAAGAATATAAAATAATATCTTATAAGAT
25039318 CATGTTTCCA
Statistics
Matches: 122, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 122 1.00
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
Found at i:25039251 original size:29 final size:28
Alignment explanation
Indices: 25039210--25039309 Score: 86
Period size: 28 Copynumber: 3.7 Consensus size: 28
25039200 TAATATCTTA
*
25039210 TAAGATTTCATATCATATCTAAGATCTC
1 TAAGATTTAATATCATATCTAAGATCTC
* *
25039238 TAAGATTATAATAT-A-A--TATG-T-TA
1 TAAGATT-TAATATCATATCTAAGATCTC
**
25039261 TAAGATTCCATATCATATCTAAGATCTC
1 TAAGATTTAATATCATATCTAAGATCTC
*
25039289 TAAGATTATAAAATCATATCT
1 TAAGATT-TAATATCATATCT
25039310 TTTAAGATCA
Statistics
Matches: 54, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
22 4 0.07
23 9 0.17
24 2 0.04
25 3 0.06
26 3 0.06
27 2 0.04
28 16 0.30
29 15 0.28
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (28 bp):
TAAGATTTAATATCATATCTAAGATCTC
Found at i:25042306 original size:22 final size:22
Alignment explanation
Indices: 25042257--25042299 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
25042247 TTATTATTTA
* *
25042257 GATATTGTAGAACTTTTGTTTG
1 GATATTGTACAACTCTTGTTTG
25042279 GATATTGTACAACTCTTGTTT
1 GATATTGTACAACTCTTGTTT
25042300 TATTATTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.49
Consensus pattern (22 bp):
GATATTGTACAACTCTTGTTTG
Found at i:25044472 original size:2 final size:2
Alignment explanation
Indices: 25044454--25044494 Score: 57
Period size: 2 Copynumber: 20.5 Consensus size: 2
25044444 TTGCTCTATC
*
25044454 TA TA GA TA TA TGA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25044495 TCTCCAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 33 0.94
3 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (2 bp):
TA
Found at i:25044649 original size:17 final size:17
Alignment explanation
Indices: 25044622--25044654 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25044612 ATTATATTAA
25044622 TATAAAATTTG-ATACT
1 TATAAAATTTGTATACT
25044638 TATAATAATTTGTATAC
1 TATAA-AATTTGTATAC
25044655 ATTTTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (17 bp):
TATAAAATTTGTATACT
Found at i:25045265 original size:33 final size:35
Alignment explanation
Indices: 25045227--25045323 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
25045217 ATGGTTATAT
25045227 TTAAATATTTAAAATATATTTTATATATT-C-TAA
1 TTAAATATTTAAAATATATTTTATATATTGCTTAA
* *
25045260 TTAAAT-TTTATAAATA-ATTAATATTTATTGCTTAA
1 TTAAATATTTA-AAATATATT-TTATATATTGCTTAA
*
25045295 --AAATATTTAAAATTTATATTTCATATATT
1 TTAAATATTTAAAA--TATATTTTATATATT
25045324 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
32 7 0.14
33 25 0.49
34 5 0.10
35 11 0.22
36 3 0.06
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (35 bp):
TTAAATATTTAAAATATATTTTATATATTGCTTAA
Found at i:25057185 original size:22 final size:21
Alignment explanation
Indices: 25057154--25057197 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
25057144 CTCATAGATG
25057154 TCTTTTCTTGTTTG-AGAAACA
1 TCTTTTCTTGTTTGTA-AAACA
25057175 TCTTTGTCTTGTTTGTAAAACA
1 TCTTT-TCTTGTTTGTAAAACA
25057197 T
1 T
25057198 TTTCTTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 15 0.71
23 1 0.05
ACGTcount: A:0.23, C:0.14, G:0.14, T:0.50
Consensus pattern (21 bp):
TCTTTTCTTGTTTGTAAAACA
Found at i:25065313 original size:46 final size:46
Alignment explanation
Indices: 25065261--25065436 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
25065251 TGGTTGAGCA
25065261 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
25065307 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
25065352 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
25065400 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25065437 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:25065417 original size:93 final size:93
Alignment explanation
Indices: 25065258--25065428 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
25065248 GGATGGTTGA
* **
25065258 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25065323 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
25065351 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25065416 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
25065429 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:25065705 original size:60 final size:60
Alignment explanation
Indices: 25065612--25065731 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
25065602 CAGGTATGTA
25065612 CTTAACCCTCGGGTTGAAAACTCGACATAACAACAATATGGTAAGATGGTAAATGAAAAT
1 CTTAACCCTCGGGTTGAAAACTCGACATAACAACAATATGGTAAGATGGTAAATGAAAAT
25065672 CTTAACCCTCGGGTTGAAAACTCGACATAACAACAATATGGTAAGATGGTAAATGAAAAT
1 CTTAACCCTCGGGTTGAAAACTCGACATAACAACAATATGGTAAGATGGTAAATGAAAAT
25065732 GTGATATAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (60 bp):
CTTAACCCTCGGGTTGAAAACTCGACATAACAACAATATGGTAAGATGGTAAATGAAAAT
Found at i:25066908 original size:484 final size:484
Alignment explanation
Indices: 25066000--25066968 Score: 1902
Period size: 484 Copynumber: 2.0 Consensus size: 484
25065990 ACAGGGTCTG
25066000 AATGAATTCGAGATCCCCTGTTCTGAATTTATAAATTCACCAAAAATTGTACAAAAATTATTAAG
1 AATGAATTCGAGATCCCCTGTTCTGAATTTATAAATTCACCAAAAATTGTACAAAAATTATTAAG
25066065 AGTCATACCTTACATGCATGGATTCCTTATTGAGTCTATTTTTAGGGGAAATAAACACCATGGTC
66 AGTCATACCTTACATGCATGGATTCCTTATTGAGTCTATTTTTAGGGGAAATAAACACCATGGTC
*
25066130 GTTGGAATTTTGTACAGGGAGAAATTCGGTTTGTAGTGCATAGGAGTCAGAGTGGTCATACCCTA
131 GTTGGAATTTTGTACAGGGAGAAATTCGGTTTGTAGTGCACAGGAGTCAGAGTGGTCATACCCTA
25066195 AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAAT
196 AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAAT
25066260 TAGTAAGTAGACATATGAGTCTAGTTTCAATAGAAATAGACGAGAACATTATTCGAGTCTTTTAC
261 TAGTAAGTAGACATATGAGTCTAGTTTCAATAGAAATAGACGAGAACATTATTCGAGTCTTTTAC
25066325 TATGAGATAATTGAAATTTAGTACAGAAGGGTTGGAAATGTCAGACAGTGAATCAGGGGTAACTT
326 TATGAGATAATTGAAATTTAGTACAGAAGGGTTGGAAATGTCAGACAGTGAATCAGGGGTAACTT
25066390 TGAGGAATAAAATGTACTATTTGGATTAACCAAAAATTCTGAAAATTTTATGAAAGAAAGGAAAA
391 TGAGGAATAAAATGTACTATTTGGATTAACCAAAAATTCTGAAAATTTTATGAAAGAAAGGAAAA
*
25066455 TGAGTCTAGTTTCAGGGAAAATTAACGGA
456 TGAGTCTAGTTTCAGGAAAAATTAACGGA
25066484 AATGAATTCGAGATCCCCTGTTCTGAATTTATAAATTCACCAAAAATTGTACAAAAATTATTAAG
1 AATGAATTCGAGATCCCCTGTTCTGAATTTATAAATTCACCAAAAATTGTACAAAAATTATTAAG
*
25066549 AGTCATACCTTACATGCATGGATTCCTTATTGAGTCTATTTTTAGGGGAAATAAACGCCATGGTC
66 AGTCATACCTTACATGCATGGATTCCTTATTGAGTCTATTTTTAGGGGAAATAAACACCATGGTC
25066614 GTTGGAATTTTGTACAGGGAGAAATTCGGTTTGTAGTGCACAGGAGTCAGAGTGGTCATACCCTA
131 GTTGGAATTTTGTACAGGGAGAAATTCGGTTTGTAGTGCACAGGAGTCAGAGTGGTCATACCCTA
25066679 AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAAT
196 AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAAT
25066744 TAGTAAGTAGACATATGAGTCTAGTTTCAATAGAAATAGACGAGAACATTATTCGAGTCTTTTAC
261 TAGTAAGTAGACATATGAGTCTAGTTTCAATAGAAATAGACGAGAACATTATTCGAGTCTTTTAC
*
25066809 TATGAGATAATTGAAATTTAGTATAGAAGGGTTGGAAATGTCAGACAGTGAATCAGGGGTAACTT
326 TATGAGATAATTGAAATTTAGTACAGAAGGGTTGGAAATGTCAGACAGTGAATCAGGGGTAACTT
25066874 TGAGGAATAAAATGTACTATTTGGATTAACCAAAAATTCTGAAAATTTTATGAAAGAAAGGAAAA
391 TGAGGAATAAAATGTACTATTTGGATTAACCAAAAATTCTGAAAATTTTATGAAAGAAAGGAAAA
25066939 TGAGTCTAGTTTCAGGAAAAATTAACGGA
456 TGAGTCTAGTTTCAGGAAAAATTAACGGA
25066968 A
1 A
25066969 CTTAATTTGG
Statistics
Matches: 481, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
484 481 1.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (484 bp):
AATGAATTCGAGATCCCCTGTTCTGAATTTATAAATTCACCAAAAATTGTACAAAAATTATTAAG
AGTCATACCTTACATGCATGGATTCCTTATTGAGTCTATTTTTAGGGGAAATAAACACCATGGTC
GTTGGAATTTTGTACAGGGAGAAATTCGGTTTGTAGTGCACAGGAGTCAGAGTGGTCATACCCTA
AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAAT
TAGTAAGTAGACATATGAGTCTAGTTTCAATAGAAATAGACGAGAACATTATTCGAGTCTTTTAC
TATGAGATAATTGAAATTTAGTACAGAAGGGTTGGAAATGTCAGACAGTGAATCAGGGGTAACTT
TGAGGAATAAAATGTACTATTTGGATTAACCAAAAATTCTGAAAATTTTATGAAAGAAAGGAAAA
TGAGTCTAGTTTCAGGAAAAATTAACGGA
Found at i:25069051 original size:39 final size:39
Alignment explanation
Indices: 25068997--25069204 Score: 267
Period size: 39 Copynumber: 5.3 Consensus size: 39
25068987 TAATGGAGAA
* ** **
25068997 TTATATCCGAGCTAAGTCTTGAAGGCATTCGTATTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
25069036 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
25069075 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
25069114 TTATATCCGGGCTAAAGTCCTGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
25069153 TTATATTCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
25069192 TTATATCCGGGCT
1 TTATATCCGGGCT
25069205 TAAAGTCCAG
Statistics
Matches: 156, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 145 0.93
40 11 0.07
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:25075338 original size:110 final size:110
Alignment explanation
Indices: 25075145--25075364 Score: 404
Period size: 110 Copynumber: 2.0 Consensus size: 110
25075135 TGTGACTATT
*
25075145 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
*
25075210 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
66 AAAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
*
25075255 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTTAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
*
25075320 AAAGGAACTAAATCAGATAGGGGAAATGAGAAAGCAATCGAGTAG
66 AAAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
25075365 CCTATCCACA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
110 106 1.00
ACGTcount: A:0.47, C:0.08, G:0.20, T:0.25
Consensus pattern (110 bp):
ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
AAAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
Found at i:25075768 original size:39 final size:39
Alignment explanation
Indices: 25075705--25075880 Score: 228
Period size: 39 Copynumber: 4.5 Consensus size: 39
25075695 TAATGGAGAA
* * *
25075705 TTATACCCGGGGTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
25075744 TTAGATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
25075783 TTATATCCGGGTTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
25075822 TTTTATCCGGGCTAAATTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
25075861 TTATATCCGGGCTAAAGTCC
1 TTATATCCGGGCT-AAGTCC
25075881 AACAGGCTTT
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 110 0.92
40 10 0.08
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:25075887 original size:39 final size:39
Alignment explanation
Indices: 25075735--25075939 Score: 193
Period size: 39 Copynumber: 5.2 Consensus size: 39
25075725 GAAGGCATTC
* *
25075735 GTGCTGGTGTTAGATCCGGGCT-AAGTCCCGA-AGGCATTC
1 GTGCTGGTGTTATATCCGGGCTAAAGTCCC-ACAGGC-TTT
* * *
25075774 GTGCTGGTGTTATATCCGGG-TTAAGCCCCGA-AGGCATTC
1 GTGCTGGTGTTATATCCGGGCTAAAGTCCC-ACAGGC-TTT
* * *
25075813 GTGCTGGTGTTTTATCCGGGCTAAATTCCCGCAGGCTTT
1 GTGCTGGTGTTATATCCGGGCTAAAGTCCCACAGGCTTT
* *
25075852 GTGCTGGTATTATATCCGGGCTAAAGTCCAACAGGCTTT
1 GTGCTGGTGTTATATCCGGGCTAAAGTCCCACAGGCTTT
* * * * *
25075891 ATGCTGGTATTATATCTGGGCTTAAAGTCCCGCATGCTTT
1 GTGCTGGTGTTATATCCGGGC-TAAAGTCCCACAGGCTTT
*
25075931 GTGGTGGTG
1 GTGCTGGTG
25075940 ATTGGATTTG
Statistics
Matches: 141, Mismatches: 21, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 109 0.77
40 31 0.22
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.32
Consensus pattern (39 bp):
GTGCTGGTGTTATATCCGGGCTAAAGTCCCACAGGCTTT
Found at i:25075896 original size:78 final size:78
Alignment explanation
Indices: 25075726--25075938 Score: 225
Period size: 78 Copynumber: 2.7 Consensus size: 78
25075716 GTAAGTCCTG
* * * * *
25075726 AAGGCATTCGTGCTGGTGTTAGATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGTTATATC
1 AAGGCATTCATGCTGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTATTATATC
* *
25075790 CGGGTTAAGCCCCG
65 CGGGTAAAGCCCCA
* * *
25075804 AAGGCATTCGTGCTGGTGTTTTATCCGGGCTAAATTCCCGCAGGCTTTGTGCTGGTATTATATCC
1 AAGGCATTCATGCTGGTGTTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTATTATATCC
*
25075869 GGGCTAAAG-TCCA
66 GGG-TAAAGCCCCA
* * * * *
25075882 ACAGGC-TTTATGCTGGTATTATATCTGGGCTTAAAGTCCCGCATGCTTTGTGGTGGT
1 A-AGGCATTCATGCTGGTGTTATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTGGT
25075939 GATTGGATTT
Statistics
Matches: 114, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 72 0.63
79 42 0.37
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.31
Consensus pattern (78 bp):
AAGGCATTCATGCTGGTGTTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTATTATATCC
GGGTAAAGCCCCA
Found at i:25084391 original size:28 final size:27
Alignment explanation
Indices: 25084327--25084393 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
25084317 ACACAAATTG
* * *
25084327 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
25084354 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
25084383 AAAATAAAATA
1 AAAATAAAATA
25084394 TATATATATA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
27 4 0.12
28 20 0.62
29 8 0.25
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:25085392 original size:2 final size:2
Alignment explanation
Indices: 25085385--25085441 Score: 87
Period size: 2 Copynumber: 28.5 Consensus size: 2
25085375 TTTTAAATTC
* * *
25085385 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT CT AT AT CT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25085427 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
25085442 ATTATGATGT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:25089765 original size:23 final size:24
Alignment explanation
Indices: 25089739--25089791 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
25089729 CACATAATGA
25089739 TTTAAATGAA-AATTTT-TAATTTT
1 TTTAAAT-AATAATTTTATAATTTT
*
25089762 TTT-AATAATTATTTTATAATTTT
1 TTTAAATAATAATTTTATAATTTT
*
25089785 TTAAAAT
1 TTTAAAT
25089792 TAAATGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 2 0.08
22 8 0.32
23 12 0.48
24 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (24 bp):
TTTAAATAATAATTTTATAATTTT
Found at i:25089775 original size:22 final size:21
Alignment explanation
Indices: 25089750--25089793 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
25089740 TTAAATGAAA
25089750 ATTTT-TAATTTTTTTAATAATT
1 ATTTTATAA-TTTTTTAA-AATT
25089772 ATTTTATAATTTTTTAAAATT
1 ATTTTATAATTTTTTAAAATT
25089793 A
1 A
25089794 AATGAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 13 0.62
23 3 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTATAATTTTTTAAAATT
Found at i:25091591 original size:24 final size:24
Alignment explanation
Indices: 25091562--25091609 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
25091552 ATTTATGGAG
25091562 TTAATAAAAAAATATATTGAAGTT
1 TTAATAAAAAAATATATTGAAGTT
*
25091586 TTAATACAAAAATATATTGAAGTT
1 TTAATAAAAAAATATATTGAAGTT
25091610 AGATTGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (24 bp):
TTAATAAAAAAATATATTGAAGTT
Found at i:25095424 original size:22 final size:20
Alignment explanation
Indices: 25095390--25095429 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
25095380 TGGCAATCTC
25095390 TTCCAAAAATCATCAAAATA
1 TTCCAAAAATCATCAAAATA
25095410 TTCCTAAAAATTCATCAAAA
1 TTCC-AAAAA-TCATCAAAA
25095430 AAATAGGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 5 0.28
22 9 0.50
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.28
Consensus pattern (20 bp):
TTCCAAAAATCATCAAAATA
Found at i:25096278 original size:25 final size:25
Alignment explanation
Indices: 25096244--25096293 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
25096234 TATACGGAAC
*
25096244 CCTGCCTATAAATACCCCTAAGAAT
1 CCTGCCTATAAATACCCCCAAGAAT
25096269 CCTGCCTATAAATACCCCCAAGAAT
1 CCTGCCTATAAATACCCCCAAGAAT
25096294 GATGGAAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.36, C:0.34, G:0.08, T:0.22
Consensus pattern (25 bp):
CCTGCCTATAAATACCCCCAAGAAT
Found at i:25102470 original size:15 final size:15
Alignment explanation
Indices: 25102452--25102486 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
25102442 TTTCTTCTTT
*
25102452 TTTTTTTGGGTTAGG
1 TTTTTTTGGGGTAGG
25102467 TTTTTTTGGGGTAGG
1 TTTTTTTGGGGTAGG
25102482 TTTTT
1 TTTTT
25102487 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.00, G:0.31, T:0.63
Consensus pattern (15 bp):
TTTTTTTGGGGTAGG
Found at i:25102502 original size:11 final size:11
Alignment explanation
Indices: 25102482--25102515 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
25102472 TTGGGGTAGG
25102482 TTTTTCTTTTTC
1 TTTTT-TTTTTC
25102494 TTTTTTTTTTC
1 TTTTTTTTTTC
25102505 TTTGTTTTTTT
1 TTT-TTTTTTT
25102516 TTTGGGTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:25102504 original size:17 final size:17
Alignment explanation
Indices: 25102482--25102518 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
25102472 TTGGGGTAGG
25102482 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
25102499 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
25102516 TTT
1 TTT
25102519 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:25102516 original size:45 final size:48
Alignment explanation
Indices: 25102429--25102531 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 48
25102419 CTTTTTTTGT
25102429 TAGGTTTTTCTTTTTTCTTCTTTTTTTTTTGGGTTAGGTTTTTTTGGGG
1 TAGGTTTTTCTTTTTTCTTCTTTTTTTTTTGGGTTA-GTTTTTTTGGGG
* * *
25102478 TAGGTTTTTC-TTTTTCTT-TTTTTTTTCTT-TGTT-TTTTTTTTGGGT
1 TAGGTTTTTCTTTTTTCTTCTTTTTTTT-TTGGGTTAGTTTTTTTGGGG
25102523 TAGGTTTTT
1 TAGGTTTTT
25102532 TTTGGGGGGC
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
45 19 0.38
47 11 0.22
48 10 0.20
49 10 0.20
ACGTcount: A:0.04, C:0.06, G:0.18, T:0.72
Consensus pattern (48 bp):
TAGGTTTTTCTTTTTTCTTCTTTTTTTTTTGGGTTAGTTTTTTTGGGG
Found at i:25103271 original size:88 final size:83
Alignment explanation
Indices: 25103164--25103741 Score: 299
Period size: 88 Copynumber: 7.0 Consensus size: 83
25103154 AACAGACATT
** * *
25103164 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
25103229 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
25103252 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
25103316 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
25103335 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
25103396 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
25103418 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
25103483 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * *
25103506 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
25103571 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
25103589 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
25103649 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
25103666 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
25103727 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
25103742 CAGAAATTGA
Statistics
Matches: 384, Mismatches: 69, Indels: 84
0.72 0.13 0.16
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 2 0.01
79 64 0.17
80 3 0.01
81 11 0.03
82 38 0.10
83 14 0.04
84 41 0.11
85 9 0.02
86 6 0.02
87 19 0.05
88 115 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:25103368 original size:30 final size:30
Alignment explanation
Indices: 25103332--25103393 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
25103322 TTTTGAAAAA
25103332 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
25103362 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
25103392 CA
1 CA
25103394 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:25103512 original size:14 final size:14
Alignment explanation
Indices: 25103489--25103523 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
25103479 TGAGTTGATT
25103489 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
25103502 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
25103516 TTTGAAAA
1 TTTGAAAA
25103524 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:25103824 original size:72 final size:73
Alignment explanation
Indices: 25103541--25104073 Score: 388
Period size: 72 Copynumber: 6.8 Consensus size: 73
25103531 ACATGTAACC
* * * *
25103541 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
25103606 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
25103619 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
25103684 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
25103697 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
25103762 ACGTGTCT
66 GCGTGTCT
* ** * * *
25103770 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
25103834 GCGTGTCC
66 GCGTGTCT
*
25103842 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTTGAAATGCAGAAATTGAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--------TTTTTTGAAA-ACAGAAATTG--
** ** *
25103907 AAATGGAAATTGAAAATACCTCGACGTGTGAT
55 --A---AAA-T--ACCT-CAGC---GTGT-CT
* * * *
25103939 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAATAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
25104004 CAGCGTGTC-
64 CAGCGTGTCT
* *
25104013 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
25104074 ACGGAAATTG
Statistics
Matches: 364, Mismatches: 58, Indels: 69
0.74 0.12 0.14
Matches are distributed among these distances:
72 65 0.18
73 29 0.08
74 43 0.12
75 31 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 51 0.14
80 2 0.01
81 8 0.02
82 10 0.03
83 2 0.01
86 2 0.01
89 2 0.01
90 9 0.02
91 9 0.02
92 2 0.01
93 2 0.01
96 4 0.01
97 1 0.00
98 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:25104026 original size:172 final size:168
Alignment explanation
Indices: 25103738--25104216 Score: 702
Period size: 165 Copynumber: 2.9 Consensus size: 168
25103728 TGATTTTTTG
* * * ** * *
25103738 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
25103801 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
25103865 ATATGAGTTGATTTTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA---TTTTTTTTTTTGAAAGGCAAAAATTGA
*
25103906 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
*
25103971 TGACTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
25104036 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
25104071 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
25104136 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
25104201 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
25104217 GAAAAAGTAG
Statistics
Matches: 282, Mismatches: 21, Indels: 15
0.89 0.07 0.05
Matches are distributed among these distances:
165 156 0.55
168 27 0.10
169 1 0.00
170 30 0.11
172 68 0.24
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:25104035 original size:74 final size:75
Alignment explanation
Indices: 25103912--25104056 Score: 222
Period size: 74 Copynumber: 1.9 Consensus size: 75
25103902 TTGAAAAATG
*
25103912 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
25103977 TTTTGACAATA
65 TTTTGACAATA
* * *
25103988 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
25104051 TTTTGA
65 TTTTGA
25104057 AAGGCAAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
75 1 0.02
76 21 0.33
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAATA
Found at i:25104202 original size:74 final size:75
Alignment explanation
Indices: 25104077--25104216 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
25104067 TTGAAAAACG
* *
25104077 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
25104142 TTTTGACAACA
65 TTTTGACAACA
* * *
25104153 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
25104217 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:25104415 original size:72 final size:71
Alignment explanation
Indices: 25104281--25104446 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
25104271 TGAACAACGT
* * * *
25104281 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
25104346 GAGTTG
66 GAGTTG
*
25104352 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
25104417 TGAGTTG
65 TGAGTTG
**
25104424 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
25104447 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:25104589 original size:71 final size:71
Alignment explanation
Indices: 25104446--25104709 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
25104436 AAAAATTAAA
* * * * *
25104446 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
25104509 GCCCCG
66 GCCCCG
* *
25104515 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
25104580 GTCTTG
66 GCCCCG
* * *
25104586 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
25104649 TGCCCCG
65 TGCCCCG
*
25104656 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
25104710 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:25104667 original size:70 final size:69
Alignment explanation
Indices: 25104446--25104709 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
25104436 AAAAATTAAA
* ** * * *
25104446 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
25104511 CCCG
66 CCCG
* * *
25104515 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
25104580 GTCTTG
64 GCCCCG
* *
25104586 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
25104651 CCCCG
65 CCCCG
*
25104656 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
25104710 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:25104692 original size:263 final size:257
Alignment explanation
Indices: 25104284--25104876 Score: 1042
Period size: 257 Copynumber: 2.3 Consensus size: 257
25104274 ACAACGTAAA
* * * * * *
25104284 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
25104349 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
25104414 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
25104479 TTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
25104544 TGATT
253 TGATT
25104549 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
25104614 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
25104679 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
25104744 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
25104806 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
25104871 TTGATT
66 TTGATT
25104877 TTCCTTGAAA
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 130 0.41
258 1 0.00
263 127 0.40
265 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:25109096 original size:12 final size:12
Alignment explanation
Indices: 25109076--25109111 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
25109066 TGGGATATGC
*
25109076 AATGTATGAATG
1 AATGCATGAATG
25109088 AATGCATGAATG
1 AATGCATGAATG
25109100 AATGCATGAATG
1 AATGCATGAATG
25109112 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:25111699 original size:15 final size:15
Alignment explanation
Indices: 25111681--25111715 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
25111671 TTCTTCTTTT
*
25111681 TTTTTTTGGGTTAGG
1 TTTTTTTGGGGTAGG
25111696 TTTTTTTGGGGTAGG
1 TTTTTTTGGGGTAGG
25111711 TTTTT
1 TTTTT
25111716 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.00, G:0.31, T:0.63
Consensus pattern (15 bp):
TTTTTTTGGGGTAGG
Found at i:25111731 original size:11 final size:11
Alignment explanation
Indices: 25111711--25111744 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
25111701 TTGGGGTAGG
25111711 TTTTTCTTTTTC
1 TTTTT-TTTTTC
25111723 TTTTTTTTTTC
1 TTTTTTTTTTC
25111734 TTTGTTTTTTT
1 TTT-TTTTTTT
25111745 TTTGGGTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:25111733 original size:17 final size:17
Alignment explanation
Indices: 25111711--25111747 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
25111701 TTGGGGTAGG
25111711 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
25111728 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
25111745 TTT
1 TTT
25111748 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Done.