Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 92 of 345
Found at i:25112783 original size:17 final size:17
Alignment explanation
Indices: 25112762--25112854 Score: 55
Period size: 18 Copynumber: 5.2 Consensus size: 17
25112752 TTTTTTAGAT
25112762 TTTTTTAAAATTTATAAA
1 TTTTTTAAAATTTA-AAA
*
25112780 TTTTTTAAAA-ATAAAA
1 TTTTTTAAAATTTAAAA
*
25112796 -ATTTTAAAATTTTTATAAA
1 TTTTTTAAAA--TTTA-AAA
* * *
25112815 TATTTTGAATTTTAAAAA
1 TTTTTTAAAATTT-AAAA
*
25112833 TTATTTTCAAAATTTGAAA
1 TT-TTTT-AAAATTTAAAA
25112852 TTT
1 TTT
25112855 ATTTTGATTT
Statistics
Matches: 58, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
15 8 0.14
16 3 0.05
17 2 0.03
18 20 0.34
19 13 0.22
20 12 0.21
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTTTTAAAATTTAAAA
Found at i:25112803 original size:24 final size:25
Alignment explanation
Indices: 25112768--25112816 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
25112758 AGATTTTTTT
*
25112768 AAAATTTATAAATTTTTTAAAAATA
1 AAAATTTATAAAATTTTTAAAAATA
*
25112793 AAAATTT-TAAAATTTTTATAAATA
1 AAAATTTATAAAATTTTTAAAAATA
25112817 TTTTGAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
AAAATTTATAAAATTTTTAAAAATA
Found at i:25117591 original size:37 final size:37
Alignment explanation
Indices: 25117550--25117627 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
25117540 GAGTGTAGTG
25117550 GTAAAGTAAATTGTACTCAAAAAGAAGAACGTAAGTT
1 GTAAAGTAAATTGTACTCAAAAAGAAGAACGTAAGTT
* ** *
25117587 GTAAAGTAAATTTTACTCGTAAAGAAGAAGGTAAGTT
1 GTAAAGTAAATTGTACTCAAAAAGAAGAACGTAAGTT
25117624 -TAAA
1 GTAAA
25117628 TCATGAAGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 4 0.11
37 33 0.89
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.27
Consensus pattern (37 bp):
GTAAAGTAAATTGTACTCAAAAAGAAGAACGTAAGTT
Found at i:25123231 original size:51 final size:51
Alignment explanation
Indices: 25123171--25123269 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
25123161 TACAAATCAA
* *
25123171 ATCTCTAAGAATATAAAATTATATATTCTAAGATTACATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATATTATAAGATTACATATCATATCTAAG
* *
25123222 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCT
1 ATCTCTAAGAATATAAAATAATATATTATAAGATTACATATCATATCT
25123270 CTAAGATTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.38
Consensus pattern (51 bp):
ATCTCTAAGAATATAAAATAATATATTATAAGATTACATATCATATCTAAG
Found at i:25123247 original size:22 final size:22
Alignment explanation
Indices: 25123222--25123330 Score: 70
Period size: 22 Copynumber: 5.2 Consensus size: 22
25123212 CATATCTAAG
*
25123222 ATCTCTAAGAATATAAAATAAT
1 ATCTCTAAGAATATAATATAAT
* * * *
25123244 ATCTTATAAG-ATTTCATATCAT
1 ATC-TCTAAGAATATAATATAAT
*
25123266 ATCTCTAAGATTATAATATAAT
1 ATCTCTAAGAATATAATATAAT
* *
25123288 A--TC--A-TATCAT-ATCTAAT
1 ATCTCTAAGAAT-ATAATATAAT
*
25123305 ATCTCTAAGATTATAATATAAT
1 ATCTCTAAGAATATAATATAAT
25123327 ATCT
1 ATCT
25123331 TATAAGATTC
Statistics
Matches: 62, Mismatches: 16, Indels: 18
0.65 0.17 0.19
Matches are distributed among these distances:
17 8 0.13
18 3 0.05
19 2 0.03
20 2 0.03
21 8 0.13
22 34 0.55
23 5 0.08
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40
Consensus pattern (22 bp):
ATCTCTAAGAATATAATATAAT
Found at i:25123346 original size:39 final size:40
Alignment explanation
Indices: 25123222--25123346 Score: 146
Period size: 39 Copynumber: 3.1 Consensus size: 40
25123212 CATATCTAAG
* *
25123222 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCAT
1 ATCTCTAAGATTATAATATAATATCTTATAAGA-TTC---TCAT
* * * *
25123266 ATCTCTAAGATTATAATATAATATCATATCATA-TCTAAT
1 ATCTCTAAGATTATAATATAATATCTTATAAGATTCTCAT
25123305 ATCTCTAAGATTATAATATAATATCTTATAAGATTC-CAT
1 ATCTCTAAGATTATAATATAATATCTTATAAGATTCTCAT
25123344 ATC
1 ATC
25123347 ATATCTAAGA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
39 38 0.54
40 2 0.03
42 2 0.03
44 28 0.40
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (40 bp):
ATCTCTAAGATTATAATATAATATCTTATAAGATTCTCAT
Found at i:25123352 original size:51 final size:51
Alignment explanation
Indices: 25123290--25123389 Score: 164
Period size: 51 Copynumber: 2.0 Consensus size: 51
25123280 AATATAATAT
* *
25123290 CATATCATATCTAATATCTCTAAGATTATAATATAATATCTTATAAGATTC
1 CATATCATATCTAAGATCTCTAAGATTATAAAATAATATCTTATAAGATTC
* *
25123341 CATATCATATCTAAGATCTCTAAGATTATAAAATCATATCTTTTAAGAT
1 CATATCATATCTAAGATCTCTAAGATTATAAAATAATATCTTATAAGAT
25123390 CATGTTTCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.40
Consensus pattern (51 bp):
CATATCATATCTAAGATCTCTAAGATTATAAAATAATATCTTATAAGATTC
Found at i:25124251 original size:26 final size:26
Alignment explanation
Indices: 25124222--25124325 Score: 163
Period size: 26 Copynumber: 4.0 Consensus size: 26
25124212 TGGTACAAAT
*
25124222 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
25124248 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
25124274 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
25124300 AGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
25124326 AGATGGGAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:25125841 original size:26 final size:26
Alignment explanation
Indices: 25125812--25125864 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25125802 TTTACAGTTT
25125812 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
25125838 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
25125864 T
1 T
25125865 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:25131322 original size:26 final size:26
Alignment explanation
Indices: 25131283--25131391 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
25131273 TGGTACAAAT
25131283 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
25131309 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25131335 TGATAATGGGTTAGGTATAATGTTCCA
1 TGATAATGGGTTAGGTA-AATGTTCCA
* *
25131362 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25131388 TGAT
1 TGAT
25131392 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
26 52 0.68
27 24 0.32
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:25131369 original size:53 final size:52
Alignment explanation
Indices: 25131283--25131391 Score: 182
Period size: 53 Copynumber: 2.1 Consensus size: 52
25131273 TGGTACAAAT
25131283 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * *
25131335 TGATAATGGGTTAGGTATAATGTTCCATGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTA-AATGTTCCATGATAATGGATTAGGTAAATATTCCA
25131388 TGAT
1 TGAT
25131392 GGGAATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
52 17 0.32
53 36 0.68
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:25132873 original size:25 final size:26
Alignment explanation
Indices: 25132845--25132896 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
25132835 TTTACAGTTT
25132845 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
25132870 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
25132896 T
1 T
25132897 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:25134078 original size:26 final size:26
Alignment explanation
Indices: 25134049--25134155 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
25134039 TGGTACAAAT
25134049 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
25134075 TGATAAT-GGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25134100 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
25134126 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25134152 TGAT
1 TGAT
25134156 GAATTTCATG
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 24 0.32
26 52 0.68
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:25134109 original size:51 final size:52
Alignment explanation
Indices: 25134049--25134155 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
25134039 TGGTACAAAT
25134049 TGATAATGGGTTAGGTAAATGTTCCATGATAATGG-TTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
* *
25134100 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
25134152 TGAT
1 TGAT
25134156 GAATTTCATG
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 35 0.66
52 18 0.34
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
Found at i:25135652 original size:25 final size:26
Alignment explanation
Indices: 25135624--25135675 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
25135614 TTTACAGTTT
25135624 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
25135649 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
25135675 T
1 T
25135676 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:25137354 original size:95 final size:96
Alignment explanation
Indices: 25137177--25137366 Score: 220
Period size: 95 Copynumber: 2.0 Consensus size: 96
25137167 TCGCTTCTTT
* * ** * * * *
25137177 TTGCTCCTTTTAGCCCTCTTGACTTCGGCTTTACCCTTGCTCAAACTTAGCTTCTTGGGCTTCTT
1 TTGCTCCTCTTAGCCCTCTTGACTTCGACTTTACCCTTGCTCAAACCAAGCTTCCTGAGCTCCGT
* * * *
25137242 GTCTGCTCCATCGTTCCCTTCGATGACAGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
* * * *
25137273 TTGCTCCTCTT-GCCCTCTTGGCTTCGACTTTTCTCTTGCTCGAACCAAGCTTCCTGAGCTCCGT
1 TTGCTCCTCTTAGCCCTCTTGACTTCGACTTTACCCTTGCTCAAACCAAGCTTCCTGAGCTCCGT
*
25137337 ATCTGCTCGATCATTCCCATCGATAACAGA
66 ATCTGCTCCATCATTCCCATCGATAACAGA
25137367 TGCGGACCAT
Statistics
Matches: 77, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
95 67 0.87
96 10 0.13
ACGTcount: A:0.14, C:0.33, G:0.16, T:0.36
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCTTGACTTCGACTTTACCCTTGCTCAAACCAAGCTTCCTGAGCTCCGT
ATCTGCTCCATCATTCCCATCGATAACAGAC
Found at i:25139044 original size:22 final size:22
Alignment explanation
Indices: 25139018--25139107 Score: 65
Period size: 22 Copynumber: 3.9 Consensus size: 22
25139008 TAATAATAAA
25139018 ATCATATCTTCTAAGATTACAT
1 ATCATATCTTCTAAGATTACAT
* * *
25139040 ATCATATCTAAGATCTCTAAGAATATAA
1 ATCATATC-----T-TCTAAGATTACAT
* * *
25139068 ATAATATCTTATAAGATTTCAT
1 ATCATATCTTCTAAGATTACAT
25139090 ATCATATC-TCTAAGATTA
1 ATCATATCTTCTAAGATTA
25139108 TAATATAATA
Statistics
Matches: 50, Mismatches: 12, Indels: 13
0.67 0.16 0.17
Matches are distributed among these distances:
21 8 0.16
22 23 0.46
23 1 0.02
27 1 0.02
28 17 0.34
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (22 bp):
ATCATATCTTCTAAGATTACAT
Found at i:25139105 original size:52 final size:52
Alignment explanation
Indices: 25139000--25139098 Score: 148
Period size: 50 Copynumber: 1.9 Consensus size: 52
25138990 TACAAATCAA
* * *
25139000 ATCTCTAATAATAATAAAATCATATCTTCTAAGATTACATATCATATCTAAG
1 ATCTCTAAGAATAATAAAATAATATCTTATAAGATTACATATCATATCTAAG
*
25139052 ATCTCTAAGAAT-AT-AAATAATATCTTATAAGATTTCATATCATATCT
1 ATCTCTAAGAATAATAAAATAATATCTTATAAGATTACATATCATATCT
25139099 CTAAGATTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 30 0.70
51 2 0.05
52 11 0.26
ACGTcount: A:0.43, C:0.14, G:0.04, T:0.38
Consensus pattern (52 bp):
ATCTCTAAGAATAATAAAATAATATCTTATAAGATTACATATCATATCTAAG
Found at i:25139113 original size:22 final size:22
Alignment explanation
Indices: 25139052--25139157 Score: 82
Period size: 22 Copynumber: 5.1 Consensus size: 22
25139042 CATATCTAAG
*
25139052 ATCTCTAAGAATATAA-ATAAT
1 ATCTCTAAGATTATAATATAAT
* * *
25139073 ATCTTATAAGATT-TCATATCAT
1 ATC-TCTAAGATTATAATATAAT
25139095 ATCTCTAAGATTATAATATAAT
1 ATCTCTAAGATTATAATATAAT
* * * *
25139117 A--TC--ATATCAT-ATCTAAG
1 ATCTCTAAGATTATAATATAAT
25139134 ATCTCTAAGATTATAATATAAT
1 ATCTCTAAGATTATAATATAAT
25139156 AT
1 AT
25139158 ATTATAAGAT
Statistics
Matches: 62, Mismatches: 15, Indels: 15
0.67 0.16 0.16
Matches are distributed among these distances:
17 6 0.10
18 5 0.08
19 2 0.03
20 2 0.03
21 18 0.29
22 29 0.47
ACGTcount: A:0.44, C:0.11, G:0.05, T:0.40
Consensus pattern (22 bp):
ATCTCTAAGATTATAATATAAT
Found at i:25139138 original size:39 final size:39
Alignment explanation
Indices: 25139037--25139157 Score: 145
Period size: 39 Copynumber: 3.0 Consensus size: 39
25139027 TCTAAGATTA
*
25139037 CATATCATATCTAAGATCTCTAAGAATATAA-ATAATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
** * *
25139075 CTTATAAGATTTCATATCATATCTCTAAGATTATAATATAATAT
1 C--ATATCATATC-TA--AGATCTCTAAGATTATAATATAATAT
25139119 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
25139158 ATTATAAGAT
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
38 1 0.01
39 25 0.37
40 7 0.10
41 4 0.06
42 7 0.10
43 16 0.24
44 8 0.12
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (39 bp):
CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
Found at i:25148365 original size:266 final size:266
Alignment explanation
Indices: 25147891--25148426 Score: 1018
Period size: 266 Copynumber: 2.0 Consensus size: 266
25147881 TTCTAGAAGG
25147891 AAAATATGTGAAGTTCAATGTTATTCACAGAAAATTTTCTATGTGCATGTCAAACTTAAAAGTCA
1 AAAATATGTGAAGTTCAATGTTATTCACAGAAAATTTTCTATGTGCATGTCAAACTTAAAAGTCA
*
25147956 ATTGAAAACCATGTAAAAGGTTTCAAGTCTTCAGAATAATACTCACTAGTAAATCTTCATTTAAA
66 ATTGAAAACCATGTAAAAGGTTTCAAGTCTTCAGAATAATACTCAATAGTAAATCTTCATTTAAA
*
25148021 ACTCTAAAATCTTCAGAAATTCATTGACATGATAAAATGGGATAAACACATGTTAAGGACCAACA
131 ACCCTAAAATCTTCAGAAATTCATTGACATGATAAAATGGGATAAACACATGTTAAGGACCAACA
* *
25148086 CTCAAAATCAGAGTTGCAATGAGCACACTGGCACATTAGATGTTATGCATCACTGGCTGTATTTA
196 CTCAAAATCAGAGTTGCAATGAGCAAACTGGCACATTAGATGCTATGCATCACTGGCTGTATTTA
25148151 TCAAGC
261 TCAAGC
25148157 AAAATATGTGAAGTTCAATGTTATTCACAGAAAATTTTCTATGTGCATGTCAAACTTAAAAGTCA
1 AAAATATGTGAAGTTCAATGTTATTCACAGAAAATTTTCTATGTGCATGTCAAACTTAAAAGTCA
25148222 ATTGAAAACCATGTAAAAGGTTTCAAGTCTTCAGAATAATACTCAATAGTAAATCTTCATTTAAA
66 ATTGAAAACCATGTAAAAGGTTTCAAGTCTTCAGAATAATACTCAATAGTAAATCTTCATTTAAA
25148287 ACCCTAAAATCTTCAGAAATTCATTGACATGATAAAATGGGATAAACACATGTTAAGGACCAACA
131 ACCCTAAAATCTTCAGAAATTCATTGACATGATAAAATGGGATAAACACATGTTAAGGACCAACA
* *
25148352 CTCAAAGTCAGAGTTGCAATGAGCAAACTGGCACATTAGATGCTATGCATCACTTGCTGTATTTA
196 CTCAAAATCAGAGTTGCAATGAGCAAACTGGCACATTAGATGCTATGCATCACTGGCTGTATTTA
25148417 TCAAGC
261 TCAAGC
25148423 AAAA
1 AAAA
25148427 GTCATGTACA
Statistics
Matches: 264, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
266 264 1.00
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (266 bp):
AAAATATGTGAAGTTCAATGTTATTCACAGAAAATTTTCTATGTGCATGTCAAACTTAAAAGTCA
ATTGAAAACCATGTAAAAGGTTTCAAGTCTTCAGAATAATACTCAATAGTAAATCTTCATTTAAA
ACCCTAAAATCTTCAGAAATTCATTGACATGATAAAATGGGATAAACACATGTTAAGGACCAACA
CTCAAAATCAGAGTTGCAATGAGCAAACTGGCACATTAGATGCTATGCATCACTGGCTGTATTTA
TCAAGC
Found at i:25150961 original size:13 final size:12
Alignment explanation
Indices: 25150943--25151000 Score: 59
Period size: 13 Copynumber: 4.9 Consensus size: 12
25150933 TTATAAATGT
25150943 ATTAAAATTATTA
1 ATTAAAA-TATTA
25150956 ATTAAAA-ATTA
1 ATTAAAATATTA
*
25150967 A--AAAATATTT
1 ATTAAAATATTA
*
25150977 TTTAAAATATTA
1 ATTAAAATATTA
25150989 ATTAAAAATATT
1 ATT-AAAATATT
25151001 TAATGATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 4 0.11
10 3 0.08
11 5 0.14
12 10 0.27
13 15 0.41
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATTAAAATATTA
Found at i:25150975 original size:21 final size:22
Alignment explanation
Indices: 25150942--25150989 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
25150932 ATTATAAATG
*
25150942 TATT-AAAATTATTAATTAAAA
1 TATTAAAAAATATTAATTAAAA
**
25150963 -ATTAAAAAATATTTTTTAAAA
1 TATTAAAAAATATTAATTAAAA
25150984 TATTAA
1 TATTAA
25150990 TTAAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 3 0.14
21 14 0.64
22 5 0.23
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TATTAAAAAATATTAATTAAAA
Found at i:25158627 original size:25 final size:25
Alignment explanation
Indices: 25158598--25158673 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
25158588 AGACCATGGT
25158598 TGAAAGATACATTGGCAACATGATA
1 TGAAAGATACATTGGCAACATGATA
* * *
25158623 TGAAATGTGTA-A---G-ACCATGGT-
1 TGAAA-G-ATACATTGGCAACATGATA
25158644 TGAAAGATACATTGGCAACATGATA
1 TGAAAGATACATTGGCAACATGATA
25158669 TGAAA
1 TGAAA
25158674 TGTGTAAGAC
Statistics
Matches: 37, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
19 2 0.05
20 2 0.05
21 5 0.14
22 6 0.16
23 2 0.05
24 6 0.16
25 10 0.27
26 2 0.05
27 2 0.05
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (25 bp):
TGAAAGATACATTGGCAACATGATA
Found at i:25158628 original size:46 final size:46
Alignment explanation
Indices: 25158576--25158786 Score: 295
Period size: 46 Copynumber: 4.6 Consensus size: 46
25158566 GCTTTCTGAA
*
25158576 ATGAAATGTGTAAGACCATGGTTGAAAGATA-CATTGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCA-TGGCAACATGAC
*
25158622 ATGAAATGTGTAAGACCATGGTTGAAAGATA-CATTGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCA-TGGCAACATGAC
25158668 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-AGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA-TGAC
** *
25158714 ATGAAATGAATAAGACCGTGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
25158760 A-GAAAATGAGTAAGACCATAGTTGAAA
1 ATG-AAATGTGTAAGACCATGGTTGAAA
25158787 AACACTATGG
Statistics
Matches: 154, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
45 2 0.01
46 149 0.97
47 3 0.02
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:25164939 original size:2 final size:2
Alignment explanation
Indices: 25164934--25164958 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
25164924 TGGTTTTTTA
25164934 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
25164959 ATCAAATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25167926 original size:29 final size:29
Alignment explanation
Indices: 25167884--25167941 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
25167874 AGATAATTAG
25167884 GGAGATGTCATTCTTAGGGCTACAAGCTT
1 GGAGATGTCATTCTTAGGGCTACAAGCTT
25167913 GGAGATGTCATTCTTAGGGCTACAAGCTT
1 GGAGATGTCATTCTTAGGGCTACAAGCTT
25167942 TTAACTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (29 bp):
GGAGATGTCATTCTTAGGGCTACAAGCTT
Found at i:25168697 original size:40 final size:39
Alignment explanation
Indices: 25168653--25168762 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 39
25168643 TAAAAAGTAT
** * *
25168653 TTATATTAAAAAAATTACCATAAATATACTAAATATTTTA
1 TTATATTAAAAAAACCA-AATAAATATAATAAATATTTTA
* *
25168693 TTATATTAAAAAACCCAAATAAATATAATAAATTTTTTA
1 TTATATTAAAAAAACCAAATAAATATAATAAATATTTTA
*
25168732 TTGTATTAAAAAATA-CAAATAAATATAATAA
1 TTATATTAAAAAA-ACCAAATAAATATAATAA
25168763 TTTTTTTGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 47 0.77
40 14 0.23
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.37
Consensus pattern (39 bp):
TTATATTAAAAAAACCAAATAAATATAATAAATATTTTA
Found at i:25168768 original size:39 final size:39
Alignment explanation
Indices: 25168672--25168780 Score: 146
Period size: 39 Copynumber: 2.8 Consensus size: 39
25168662 AAAAATTACC
* * * *
25168672 ATAAATATACTAAATATTTTATTATATTAAAAAACCCAA
1 ATAAATATAATAAATTTTTTATTGTATTAAAAAACACAA
*
25168711 ATAAATATAATAAATTTTTTATTGTATTAAAAAATACAA
1 ATAAATATAATAAATTTTTTATTGTATTAAAAAACACAA
* * *
25168750 ATAAATATAATAATTTTTTTGTAGTATTAAA
1 ATAAATATAATAAATTTTTTATTGTATTAAA
25168781 TATAATTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (39 bp):
ATAAATATAATAAATTTTTTATTGTATTAAAAAACACAA
Found at i:25174577 original size:12 final size:12
Alignment explanation
Indices: 25174560--25174585 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25174550 TAAAGATGAC
25174560 TTATTATAATAT
1 TTATTATAATAT
25174572 TTATTATAATAT
1 TTATTATAATAT
25174584 TT
1 TT
25174586 TCTCACTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATTATAATAT
Found at i:25177679 original size:13 final size:12
Alignment explanation
Indices: 25177659--25177689 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
25177649 TGGAAAATAC
25177659 AAAAAAAAGAAA
1 AAAAAAAAGAAA
25177671 AAGAAAAAAGAAA
1 AA-AAAAAAGAAA
25177684 AAAAAA
1 AAAAAA
25177690 GCACCAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:25179450 original size:3 final size:3
Alignment explanation
Indices: 25179442--25179466 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
25179432 TTGAAGACAA
25179442 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
25179467 TTTAATAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:25179829 original size:2 final size:2
Alignment explanation
Indices: 25179822--25179865 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
25179812 AATACTAAAT
25179822 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25179864 TA
1 TA
25179866 AATAAGGAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25180869 original size:15 final size:15
Alignment explanation
Indices: 25180849--25180877 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
25180839 CTTTGTCAGG
25180849 TTTTTTT-TTTTTAT
1 TTTTTTTATTTTTAT
25180863 TTTTTTTATTTTTAT
1 TTTTTTTATTTTTAT
25180878 GAATGGGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTATTTTTAT
Found at i:25182760 original size:4 final size:4
Alignment explanation
Indices: 25182753--25183605 Score: 1706
Period size: 4 Copynumber: 213.2 Consensus size: 4
25182743 GTAAGAGCTT
25182753 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25182801 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25182849 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25182897 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25182945 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25182993 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183041 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183089 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183137 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183185 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183233 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183281 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183329 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183377 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183425 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183473 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183521 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25183569 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
25183606 GTCTCTTCTA
Statistics
Matches: 849, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 849 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:25187631 original size:39 final size:39
Alignment explanation
Indices: 25187576--25187760 Score: 298
Period size: 39 Copynumber: 4.7 Consensus size: 39
25187566 TTCCAACCCA
* * *
25187576 AATGCCTTCGGAACTTAGCCCGGATATAACATCAGCATG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
25187615 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
25187654 AATGCCTTCGAGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
25187693 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
25187732 AATGCCTTTGTGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
25187761 ATCTCATACA
Statistics
Matches: 135, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 135 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:25188594 original size:13 final size:13
Alignment explanation
Indices: 25188576--25188604 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
25188566 TATAAAATTT
25188576 ATAACATAGTTGA
1 ATAACATAGTTGA
25188589 ATAACATAGTTGA
1 ATAACATAGTTGA
25188602 ATA
1 ATA
25188605 TTCCTTAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (13 bp):
ATAACATAGTTGA
Found at i:25192776 original size:29 final size:29
Alignment explanation
Indices: 25192734--25192798 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
25192724 GAATTGAATG
25192734 TTAATTAGATAATTTTAATTATTAGGGAC
1 TTAATTAGATAATTTTAATTATTAGGGAC
25192763 TTAATTAGATAATTTTAATTATTAGGGAC
1 TTAATTAGATAATTTTAATTATTAGGGAC
*
25192792 TAAATTA
1 TTAATTA
25192799 AGAATGAGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.40, C:0.03, G:0.12, T:0.45
Consensus pattern (29 bp):
TTAATTAGATAATTTTAATTATTAGGGAC
Found at i:25193407 original size:3 final size:3
Alignment explanation
Indices: 25193399--25193439 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
25193389 ATTAATTAAG
25193399 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
25193440 GTTTAATTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:25193785 original size:11 final size:12
Alignment explanation
Indices: 25193769--25193797 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
25193759 AATAAACATA
25193769 AAAGAATAAA-G
1 AAAGAATAAATG
25193780 AAAGAATAAATG
1 AAAGAATAAATG
25193792 AAAGAA
1 AAAGAA
25193798 ATGAAGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.72, C:0.00, G:0.17, T:0.10
Consensus pattern (12 bp):
AAAGAATAAATG
Found at i:25194262 original size:17 final size:18
Alignment explanation
Indices: 25194240--25194273 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
25194230 TAAATGAGTT
25194240 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
25194257 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
25194274 AAAAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:25194591 original size:36 final size:35
Alignment explanation
Indices: 25194551--25194643 Score: 91
Period size: 36 Copynumber: 2.5 Consensus size: 35
25194541 TATACGTGTG
*
25194551 GAATTGAATTGAATAT-TGACTTGAAAA-TGGAAAAGT
1 GAATTGAATTGAAT-TGTGA-TT-AAAAGTGAAAAAGT
*
25194587 GAATTTTGAATTGAATTGTTATTAAAAGTGAAAAAGT
1 GAA--TTGAATTGAATTGTGATTAAAAGTGAAAAAGT
*
25194624 GAAATTGAATTGAAATGTGA
1 G-AATTGAATTGAATTGTGA
25194644 ATTTGGAGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
36 21 0.44
37 12 0.25
38 15 0.31
ACGTcount: A:0.44, C:0.01, G:0.22, T:0.33
Consensus pattern (35 bp):
GAATTGAATTGAATTGTGATTAAAAGTGAAAAAGT
Found at i:25197062 original size:75 final size:75
Alignment explanation
Indices: 25196901--25197062 Score: 202
Period size: 75 Copynumber: 2.2 Consensus size: 75
25196891 CAATCGTTGT
* * *
25196901 TATACCCAACTAGCA-CTGGGCTCAAACACCGTTGGTTTATCTAACTAGAGCTGGACTCACATTC
1 TATACCCGACTAG-AGCTGGGCGCAAACACCGTTGGTTTATCCAACTAGAGCTGGACTCACATTC
*
25196965 AATATTGTCGG
65 AATATTGTCGC
** ** * *
25196976 TATACTTGACTAGAGCTGGGCGCAAACATTGTTGGTTTATCCAGCTAGAGCTGGGCTCACATTCA
1 TATACCCGACTAGAGCTGGGCGCAAACACCGTTGGTTTATCCAACTAGAGCTGGACTCACATTCA
25197041 ATATTGTCTGC
66 ATATTGTC-GC
25197052 TA-ACCCGACTA
1 TATACCCGACTA
25197063 ACATTAGGCA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
74 1 0.01
75 69 0.95
76 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
TATACCCGACTAGAGCTGGGCGCAAACACCGTTGGTTTATCCAACTAGAGCTGGACTCACATTCA
ATATTGTCGC
Found at i:25203053 original size:27 final size:28
Alignment explanation
Indices: 25203023--25203089 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
25203013 ACATAAATTT
25203023 TAAATTTTAAAAAATA-AAAAAAAAAAC
1 TAAATTTTAAAAAATATAAAAAAAAAAC
* * * *
25203050 TAAATTTTTTAAAAATATAAATATAAAAT
1 TAAA-TTTTAAAAAATATAAAAAAAAAAC
*
25203079 TAGATTTTAAA
1 TAAATTTTAAA
25203090 TTTACTAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
27 4 0.12
28 17 0.53
29 11 0.34
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (28 bp):
TAAATTTTAAAAAATATAAAAAAAAAAC
Found at i:25204379 original size:15 final size:16
Alignment explanation
Indices: 25204355--25204385 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
25204345 TGAGTATTTG
25204355 AAAAATAAATTTAGAT
1 AAAAATAAATTTAGAT
25204371 AAAAA-AAATTTAGAT
1 AAAAATAAATTTAGAT
25204386 CTATTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (16 bp):
AAAAATAAATTTAGAT
Found at i:25206596 original size:30 final size:31
Alignment explanation
Indices: 25206529--25206587 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
25206519 TGAGTTTTTT
*
25206529 TCATAAAAATTACTCGAATTTTTTTTATTAA
1 TCATAAAAATGACTCGAATTTTTTTTATTAA
*
25206560 TTATAAAAATGACTC-AATTTTTTATTAT
1 TCATAAAAATGACTCGAATTTTTT-TTAT
25206588 GTACATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.49
Consensus pattern (31 bp):
TCATAAAAATGACTCGAATTTTTTTTATTAA
Found at i:25215022 original size:131 final size:130
Alignment explanation
Indices: 25214830--25215081 Score: 326
Period size: 131 Copynumber: 1.9 Consensus size: 130
25214820 TAGAATGACT
* * *
25214830 GAAATTCTAAAGGAATATTCAATTATTTGGAACAAACAAAAGATCGCAACCCAGCACGATAGGGC
1 GAAATTCCAAAGGAATATTCAATTATTTGGAACAAACAAAAGATCACAACCCAGCACGATAGGGA
* * * *
25214895 ACGATTCCCCGAATTGCCAAACGTCGAACATTATCTTCGTTTTGAAGAATTTTTAAAGACATGAG
66 ACGATT-CCCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAGACATGAG
25214960 C
130 C
* * * **
25214961 GAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAA-ATCACAACCCAGCACGATAGGG
1 GAAATTCCAAAGGAATATTCAATTATTTGGAACAAAC-AAAAGATCACAACCCAGCACGATAGGG
* * ** *
25215025 AACGATTTCTGAATTGCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTAAA
65 AACGATTCCCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAA
25215082 TGAATAGGTA
Statistics
Matches: 103, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
130 41 0.40
131 60 0.58
132 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (130 bp):
GAAATTCCAAAGGAATATTCAATTATTTGGAACAAACAAAAGATCACAACCCAGCACGATAGGGA
ACGATTCCCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAGACATGAGC
Found at i:25215879 original size:2 final size:2
Alignment explanation
Indices: 25215872--25215904 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
25215862 ACATGTACAA
25215872 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25215905 GAATATTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25216144 original size:2 final size:2
Alignment explanation
Indices: 25216137--25216161 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
25216127 GTATAGATTA
25216137 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
25216162 CCAATGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25217629 original size:19 final size:19
Alignment explanation
Indices: 25217605--25217684 Score: 128
Period size: 19 Copynumber: 4.3 Consensus size: 19
25217595 GGCTTGTAAT
25217605 TTGGGTCTAGGTTTAGTTA
1 TTGGGTCTAGGTTTAGTTA
*
25217624 TTGGGTCTAGGTTT-G-AA
1 TTGGGTCTAGGTTTAGTTA
25217641 TTTGGGTCTAGGTTTAGTTA
1 -TTGGGTCTAGGTTTAGTTA
25217661 TTGGGTCTAGGTTTAGTTA
1 TTGGGTCTAGGTTTAGTTA
25217680 TTGGG
1 TTGGG
25217685 CTTGTTTGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
17 1 0.02
18 15 0.27
19 39 0.70
20 1 0.02
ACGTcount: A:0.15, C:0.05, G:0.34, T:0.46
Consensus pattern (19 bp):
TTGGGTCTAGGTTTAGTTA
Found at i:25217652 original size:37 final size:37
Alignment explanation
Indices: 25217602--25217674 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
25217592 TCGGGCTTGT
25217602 AATTTGGGTCTAGGTTTAGTTATTGGGTCTAGGTTTG
1 AATTTGGGTCTAGGTTTAGTTATTGGGTCTAGGTTTG
25217639 AATTTGGGTCTAGGTTTAGTTATTGGGTCTAGGTTT
1 AATTTGGGTCTAGGTTTAGTTATTGGGTCTAGGTTT
25217675 AGTTATTGGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.16, C:0.05, G:0.32, T:0.47
Consensus pattern (37 bp):
AATTTGGGTCTAGGTTTAGTTATTGGGTCTAGGTTTG
Found at i:25218213 original size:35 final size:35
Alignment explanation
Indices: 25218168--25218237 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
25218158 CCCAATGGGA
*
25218168 AAAAATCTTGGCTAAAGGAAAAGAGTGCAACATAT
1 AAAAACCTTGGCTAAAGGAAAAGAGTGCAACATAT
*
25218203 AAAAACCTTGGTTAAAGGAAAAGAGTGCAACATAT
1 AAAAACCTTGGCTAAAGGAAAAGAGTGCAACATAT
25218238 TTTTTACTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (35 bp):
AAAAACCTTGGCTAAAGGAAAAGAGTGCAACATAT
Found at i:25219114 original size:14 final size:14
Alignment explanation
Indices: 25219095--25219123 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
25219085 TTCAACCCTT
25219095 CTTCAAACTGAATG
1 CTTCAAACTGAATG
25219109 CTTCAAACTGAATG
1 CTTCAAACTGAATG
25219123 C
1 C
25219124 ACATTTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (14 bp):
CTTCAAACTGAATG
Found at i:25220698 original size:2 final size:2
Alignment explanation
Indices: 25220682--25220724 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
25220672 CCAAATTAAC
* *
25220682 TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25220724 T
1 T
25220725 TTACTAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:25221312 original size:21 final size:21
Alignment explanation
Indices: 25221288--25221369 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 21
25221278 AAGCCCGAAG
* *
25221288 GCTAAATAGAAGCACATAAGT
1 GCTAAACAGAAACACATAAGT
* *
25221309 GCTAAACAGAAACCCATAAGG
1 GCTAAACAGAAACACATAAGT
* * * *
25221330 GTTGAAC-GAAAGCTCATAAGA
1 GCTAAACAGAAA-CACATAAGT
* *
25221351 GCTAAACGGAAACCCATAA
1 GCTAAACAGAAACACATAA
25221370 AGGTTAAACA
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
20 4 0.08
21 40 0.83
22 4 0.08
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.15
Consensus pattern (21 bp):
GCTAAACAGAAACACATAAGT
Found at i:25221363 original size:42 final size:42
Alignment explanation
Indices: 25221297--25221445 Score: 174
Period size: 42 Copynumber: 3.5 Consensus size: 42
25221287 GGCTAAATAG
* *
25221297 AAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGAACGA
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTGAACGA
* * * *
25221339 AAGCTCATAAGAGCTAAACGGAAACCCATAAAGGTTAAACAA
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTGAACGA
* * * *
25221381 AAGCTCAAAAGAGCTGAACAGAAACCTATTAGGGTTGAACGGA
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTGAAC-GA
* *
25221424 AA-CTCATATGAGTTAAACAGAA
1 AAGCTCATAAGAGCTAAACAGAA
25221446 GCTCGTGAAA
Statistics
Matches: 88, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 85 0.97
43 3 0.03
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.16
Consensus pattern (42 bp):
AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTGAACGA
Found at i:25221377 original size:21 final size:20
Alignment explanation
Indices: 25221311--25221378 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
25221301 ACATAAGTGC
*
25221311 TAAACAGAAACCCATAAGGGT
1 TAAAC-GAAACCCATAAAGGT
* * *
25221332 TGAACGAAAGCTCAT-AAGAGC
1 TAAACGAAA-CCCATAAAG-GT
25221353 TAAACGGAAACCCATAAAGGT
1 TAAAC-GAAACCCATAAAGGT
25221374 TAAAC
1 TAAAC
25221379 AAAAGCTCAA
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
20 6 0.17
21 23 0.64
22 7 0.19
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.15
Consensus pattern (20 bp):
TAAACGAAACCCATAAAGGT
Found at i:25223894 original size:19 final size:19
Alignment explanation
Indices: 25223870--25223914 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
25223860 TAGGGAGTAT
*
25223870 AATCGTTTTCTGATGGTCA
1 AATCGTTTTCTGACGGTCA
25223889 AATCGTTTTCTGACGGTCA
1 AATCGTTTTCTGACGGTCA
25223908 AATCGTT
1 AATCGTT
25223915 CTTTCAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (19 bp):
AATCGTTTTCTGACGGTCA
Found at i:25225813 original size:18 final size:17
Alignment explanation
Indices: 25225792--25225834 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
25225782 TTTTTTCATT
25225792 AAAATTTATTATATAATC
1 AAAATTTATTA-ATAATC
* *
25225810 AAAATTGTATTAATATTT
1 AAAATT-TATTAATAATC
25225828 AAAATTT
1 AAAATTT
25225835 GAAAAACAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 16 0.73
19 5 0.23
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
AAAATTTATTAATAATC
Found at i:25225870 original size:34 final size:34
Alignment explanation
Indices: 25225819--25225893 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 34
25225809 CAAAATTGTA
* *
25225819 TTAATATT-TAAAATTTG-AAAAACAAAAAATAT
1 TTAAAATTGTAAAATTTGAAAAAACAAAAAATAC
* *
25225851 TTAGAAATTGTAAATTTTGAAAAAAGAAAAAATAC
1 TTA-AAATTGTAAAATTTGAAAAAACAAAAAATAC
25225886 TTAAAATT
1 TTAAAATT
25225894 TGTATAAGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 3 0.08
33 4 0.11
34 13 0.36
35 16 0.44
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (34 bp):
TTAAAATTGTAAAATTTGAAAAAACAAAAAATAC
Found at i:25232953 original size:24 final size:24
Alignment explanation
Indices: 25232921--25233080 Score: 117
Period size: 24 Copynumber: 6.7 Consensus size: 24
25232911 GGGTCAACAT
25232921 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* *
25232945 TGGCACTATGTGTGAGGAATTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* *
25232969 TGGCACTATGTGTGCTGATTTGGA
1 TGGCACTATGTGTGCGGATTTGAA
* * ** * *** *
25232993 TGTCAATACATGAGTAAATCTTCAA
1 TGGCACTATGTGTGCGGAT-TTGAA
* *
25233018 -GGCACTATGTGTGCGG-TGTAGCA
1 TGGCACTATGTGTGCGGAT-TTGAA
* **
25233041 TGGCACTATGTGTGCGAATTTGTT
1 TGGCACTATGTGTGCGGATTTGAA
*
25233065 TAGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
25233081 AAATCGTTTG
Statistics
Matches: 100, Mismatches: 33, Indels: 6
0.72 0.24 0.04
Matches are distributed among these distances:
23 3 0.03
24 93 0.93
25 4 0.04
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:25233089 original size:24 final size:24
Alignment explanation
Indices: 25233043--25233089 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
25233033 GTGTAGCATG
* *
25233043 GCACTATGTGTGCGAATTTGTTTA
1 GCACTATGTGTGCGAAATCGTTTA
25233067 GCACTATGTGTGCGAAATCGTTT
1 GCACTATGTGTGCGAAATCGTTT
25233090 GATGATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.15, G:0.26, T:0.38
Consensus pattern (24 bp):
GCACTATGTGTGCGAAATCGTTTA
Found at i:25237562 original size:38 final size:37
Alignment explanation
Indices: 25237520--25237642 Score: 101
Period size: 38 Copynumber: 3.3 Consensus size: 37
25237510 TGTACATGTA
25237520 TAATTATGATGAAATTAGTTTTATTTCATATACGTTAT
1 TAATTAT-ATGAAATTAGTTTTATTTCATATACGTTAT
* *** * *
25237558 TAATTCTATGTTTTTA-TATATTA-TT-ATTGTACATGTA-
1 TAATTATATGAAATTAGT-T-TTATTTCA-TATACGT-TAT
25237595 TAATTATAATGAAATTAGTTTTATTTCATATACGTTAT
1 TAATTAT-ATGAAATTAGTTTTATTTCATATACGTTAT
*
25237633 TAATTCTATG
1 TAATTATATG
25237643 TTATTTTATT
Statistics
Matches: 63, Mismatches: 13, Indels: 19
0.66 0.14 0.20
Matches are distributed among these distances:
36 2 0.03
37 28 0.44
38 31 0.49
39 2 0.03
ACGTcount: A:0.33, C:0.06, G:0.09, T:0.52
Consensus pattern (37 bp):
TAATTATATGAAATTAGTTTTATTTCATATACGTTAT
Found at i:25237579 original size:75 final size:75
Alignment explanation
Indices: 25237494--25237644 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
25237484 ATTAAAATAC
*
25237494 TTTTATATATTATTATTGTACATGTATAATTATGATGAAATTAGTTTTATTTCATATACGTTATT
1 TTTTATATATTATTATTGTACATGTATAATTATAATGAAATTAGTTTTATTTCATATACGTTATT
25237559 AATTCTATGT
66 AATTCTATGT
25237569 TTTTATATATTATTATTGTACATGTATAATTATAATGAAATTAGTTTTATTTCATATACGTTATT
1 TTTTATATATTATTATTGTACATGTATAATTATAATGAAATTAGTTTTATTTCATATACGTTATT
25237634 AATTCTATGT
66 AATTCTATGT
25237644 T
1 T
25237645 ATTTTATTTA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.32, C:0.05, G:0.09, T:0.54
Consensus pattern (75 bp):
TTTTATATATTATTATTGTACATGTATAATTATAATGAAATTAGTTTTATTTCATATACGTTATT
AATTCTATGT
Found at i:25237619 original size:37 final size:36
Alignment explanation
Indices: 25237503--25237619 Score: 96
Period size: 37 Copynumber: 3.1 Consensus size: 36
25237493 CTTTTATATA
25237503 TTATTATTGTACATGTATAATTATGATGAAATTAGTT
1 TTATTATTGTACATGTATAATTAT-ATGAAATTAGTT
* * * ***
25237540 TTATT-TCATATACGT-TATTAATTCTATGTTTTTA-TAT
1 TTATTAT--TGTACATGTA-TAATTATATGAAATTAGT-T
25237577 ATTATTATTGTACATGTATAATTATAATGAAATTAGTT
1 -TTATTATTGTACATGTATAATTAT-ATGAAATTAGTT
25237615 TTATT
1 TTATT
25237620 TCATATACGT
Statistics
Matches: 59, Mismatches: 12, Indels: 18
0.66 0.13 0.20
Matches are distributed among these distances:
36 2 0.03
37 30 0.51
38 25 0.42
39 2 0.03
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.53
Consensus pattern (36 bp):
TTATTATTGTACATGTATAATTATATGAAATTAGTT
Found at i:25237700 original size:28 final size:27
Alignment explanation
Indices: 25237646--25237753 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
25237636 TTCTATGTTA
* *
25237646 TTTTATTTATATAGTTTCTTTTAAATC
1 TTTTATATATATATTTTCTTTTAAATC
25237673 TATTTA-ATATATATTTTCTTTTCAAATC
1 T-TTTATATATATATTTTCTTTT-AAATC
* * * *
25237701 TGTTATGTAAATATTTTCTTCTAAA-C
1 TTTTATATATATATTTTCTTTTAAATC
*
25237727 TTATTATATATATATTTTCTTTAAAAT
1 TT-TTATATATATATTTTCTTTTAAAT
25237754 TATTCATATA
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
26 2 0.03
27 40 0.62
28 23 0.35
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.57
Consensus pattern (27 bp):
TTTTATATATATATTTTCTTTTAAATC
Found at i:25237769 original size:26 final size:27
Alignment explanation
Indices: 25237683--25237769 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
25237673 TATTTAATAT
* * * * *
25237683 ATATTTTCTTTTCAAATCTGTTATGTAA
1 ATATTTTCTTCTAAAAT-TATTATATAC
* *
25237711 ATATTTTCTTCTAAACTTATTATATAT
1 ATATTTTCTTCTAAAATTATTATATAC
25237738 ATATTTTCTT-TAAAATTATTCATATAC
1 ATATTTTCTTCTAAAATTATT-ATATAC
25237765 A-ATTT
1 ATATTT
25237770 GGTTTTTTTC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 13 0.26
27 23 0.46
28 14 0.28
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.54
Consensus pattern (27 bp):
ATATTTTCTTCTAAAATTATTATATAC
Found at i:25239368 original size:37 final size:37
Alignment explanation
Indices: 25239317--25239433 Score: 97
Period size: 37 Copynumber: 3.4 Consensus size: 37
25239307 TATTCCAAAA
*
25239317 TAATA-TTATTTTAATAGTTTAATATTAAATTTAATT
1 TAATACTTATCTTAATAGTTTAATATTAAATTTAATT
*
25239353 TAATACTTATCTTAATAG--T-AT-TT-TA-TTAATT
1 TAATACTTATCTTAATAGTTTAATATTAAATTTAATT
* ** * *
25239384 TAATACTGAAGTGATTA-TCTTAATATTAAATTTAATT
1 TAATACTTATCTTAATAGT-TTAATATTAAATTTAATT
*
25239421 TAATATTTATCTT
1 TAATACTTATCTT
25239434 GTAGAGAAAC
Statistics
Matches: 60, Mismatches: 13, Indels: 15
0.68 0.15 0.17
Matches are distributed among these distances:
31 18 0.30
32 1 0.02
33 3 0.05
34 4 0.07
35 3 0.05
36 6 0.10
37 25 0.42
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (37 bp):
TAATACTTATCTTAATAGTTTAATATTAAATTTAATT
Found at i:25246915 original size:64 final size:64
Alignment explanation
Indices: 25246810--25247017 Score: 177
Period size: 67 Copynumber: 3.2 Consensus size: 64
25246800 CATCATATGT
* * *
25246810 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GACA-TA-AATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
25246875 TAG
62 TAG
** * * * * * *
25246878 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATAAATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGT
25246943 AG
63 AG
* * ** * *
25246945 ACAAGAGAGCTACGACATAAAT-TGGCTAGGTCACATGGGTGGTACTGCGTGTTCATCATGT-G
1 ACAAGAGAGCTACGACATAAATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
25247007 TACAAGAGAGC
1 -ACAAGAGAGC
25247018 CGAACTATAT
Statistics
Matches: 112, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 24 0.21
65 2 0.02
66 23 0.21
67 31 0.28
68 13 0.12
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
ACAAGAGAGCTACGACATAAATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:25249160 original size:20 final size:21
Alignment explanation
Indices: 25249134--25249182 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
25249124 GCTGTGTGGT
* * *
25249134 TAATTAGGTTTTAGTTAAGTG
1 TAATTAGGTTTGAATTAAGAG
25249155 -AATTA-GTTTGAATTAAGAG
1 TAATTAGGTTTGAATTAAGAG
25249174 TAATTAGGT
1 TAATTAGGT
25249183 GAAAGGATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 11 0.48
20 10 0.43
21 2 0.09
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (21 bp):
TAATTAGGTTTGAATTAAGAG
Found at i:25249330 original size:20 final size:19
Alignment explanation
Indices: 25249286--25249333 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
25249276 TGTATGGTAA
*
25249286 AAATAAT-TACATGTGTAC
1 AAATAATATACATATGTAC
*
25249304 AAATAATATACATATGTAT
1 AAATAATATACATATGTAC
25249323 ATAATAATATA
1 A-AATAATATA
25249334 TGTATACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 7 0.27
19 10 0.38
20 9 0.35
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (19 bp):
AAATAATATACATATGTAC
Found at i:25250856 original size:27 final size:28
Alignment explanation
Indices: 25250808--25250861 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
25250798 TAAAATAGGA
* *
25250808 AAAATAATATATTTGGTAATAATAATAT
1 AAAATAATATATATGGTAATAAAAATAT
25250836 AAAATAATA-ATAT-GTACATAAAAATA
1 AAAATAATATATATGGTA-ATAAAAATA
25250862 CATATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.13
27 11 0.48
28 9 0.39
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (28 bp):
AAAATAATATATATGGTAATAAAAATAT
Found at i:25251177 original size:2 final size:2
Alignment explanation
Indices: 25251120--25251158 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
25251110 GGTATTTAAA
*
25251120 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25251159 ATAGTATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:25256426 original size:6 final size:6
Alignment explanation
Indices: 25256415--25256447 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
25256405 ACCAGATCTC
25256415 CTCCAT CTCCAT CTCCAT CTCCAT CTCCAT CTC
1 CTCCAT CTCCAT CTCCAT CTCCAT CTCCAT CTC
25256448 TGTCTTAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (6 bp):
CTCCAT
Found at i:25265024 original size:21 final size:21
Alignment explanation
Indices: 25264990--25265030 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
25264980 AGACAAGCGA
* *
25264990 TACTCCACAGCAGGTAGAGTG
1 TACTCCAAAACAGGTAGAGTG
*
25265011 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTAGAGT
25265031 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:25269553 original size:12 final size:12
Alignment explanation
Indices: 25269536--25269560 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25269526 AATTACGGTA
25269536 TCAACACAAATC
1 TCAACACAAATC
25269548 TCAACACAAATC
1 TCAACACAAATC
25269560 T
1 T
25269561 TAGCGTACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (12 bp):
TCAACACAAATC
Found at i:25269970 original size:19 final size:19
Alignment explanation
Indices: 25269946--25269982 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
25269936 ATTTCAACAG
25269946 CCACATGGGCTAGGCCATT
1 CCACATGGGCTAGGCCATT
*
25269965 CCACATGGGCTGGGCCAT
1 CCACATGGGCTAGGCCAT
25269983 GTGAGCTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (19 bp):
CCACATGGGCTAGGCCATT
Found at i:25273053 original size:9 final size:9
Alignment explanation
Indices: 25273035--25273084 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
25273025 ATAAATATAA
25273035 AATTAACCG
1 AATTAACCG
*
25273044 AATTACCCG
1 AATTAACCG
*
25273053 AATT-ACTCA
1 AATTAAC-CG
25273062 AATTAACCG
1 AATTAACCG
25273071 AATTAACCG
1 AATTAACCG
25273080 AATTA
1 AATTA
25273085 TTTGTATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
8 1 0.03
9 32 0.91
10 2 0.06
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:25273119 original size:5 final size:6
Alignment explanation
Indices: 25273104--25273150 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
25273094 AATTATATGT
*
25273104 TTTTTA TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
25273151 ATTAAATTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 28 0.76
7 8 0.22
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:25281585 original size:17 final size:17
Alignment explanation
Indices: 25281534--25281592 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 17
25281524 CTTAATCAAT
25281534 TTAATATTAAATTAATATA
1 TTAA-ATTAAATTAA-ATA
* *
25281553 CTACTATTAAGA-TAAATA
1 TTA-AATTAA-ATTAAATA
25281571 TTAAATTAAATTAAATA
1 TTAAATTAAATTAAATA
25281588 TTAAA
1 TTAAA
25281593 CTATTAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 1 0.03
17 16 0.48
18 5 0.15
19 10 0.30
20 1 0.03
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (17 bp):
TTAAATTAAATTAAATA
Found at i:25281596 original size:37 final size:36
Alignment explanation
Indices: 25281534--25281609 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
25281524 CTTAATCAAT
* *
25281534 TTAATATTAAATTAATATACTACTATTAAGATAAATA
1 TTAATATTAAATTAATATACAACTATTAAAAT-AATA
25281571 TTAA-ATTAAATTAAATATTA-AACTATTAAAATAATA
1 TTAATATTAAATT-AATA-TACAACTATTAAAATAATA
25281607 TTA
1 TTA
25281610 TTTTTGGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 15 0.43
37 18 0.51
38 2 0.06
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (36 bp):
TTAATATTAAATTAATATACAACTATTAAAATAATA
Found at i:25283206 original size:16 final size:16
Alignment explanation
Indices: 25283185--25283215 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25283175 CCATGCATAC
*
25283185 AAAATATGAAAGACAA
1 AAAATATAAAAGACAA
25283201 AAAATATAAAAGACA
1 AAAATATAAAAGACA
25283216 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.06, G:0.10, T:0.13
Consensus pattern (16 bp):
AAAATATAAAAGACAA
Found at i:25286779 original size:27 final size:27
Alignment explanation
Indices: 25286749--25286806 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
25286739 CTCAACAGGT
* * * *
25286749 TACCCTGTGTTTATTTTCCCGATGGAC
1 TACCCTATGTTTATTGTCCCAACGGAC
25286776 TACCCTATGTTTATTGTCCCAACGGAC
1 TACCCTATGTTTATTGTCCCAACGGAC
25286803 TACC
1 TACC
25286807 TATAATGTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.36
Consensus pattern (27 bp):
TACCCTATGTTTATTGTCCCAACGGAC
Found at i:25290508 original size:43 final size:42
Alignment explanation
Indices: 25290440--25290572 Score: 176
Period size: 43 Copynumber: 3.1 Consensus size: 42
25290430 TGAAACTCGA
* * *
25290440 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGG
1 TGATGTGTATTC-GGCTTTCGTGCCTAGCAGGCTTCGTGCCGG
*
25290483 TGATGTGTATTCAGGCTTTCATGCCTAGCAGGCTTCGTGCCGG
1 TGATGTGTATTC-GGCTTTCGTGCCTAGCAGGCTTCGTGCCGG
* **
25290526 TGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGCCGG
1 TGATGTGTATTCGGCT-TTCGTGCCTAGCAGGCTTCGTGCCGG
25290569 TGAT
1 TGAT
25290573 TCGAGCAAGG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 3 0.04
43 77 0.96
ACGTcount: A:0.14, C:0.22, G:0.32, T:0.33
Consensus pattern (42 bp):
TGATGTGTATTCGGCTTTCGTGCCTAGCAGGCTTCGTGCCGG
Found at i:25290762 original size:29 final size:28
Alignment explanation
Indices: 25290729--25290828 Score: 94
Period size: 29 Copynumber: 3.5 Consensus size: 28
25290719 ATGATTAGAG
* *
25290729 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCAAA-TCCTTTAATCGA
* ** *
25290758 GCACTATGTGTGCGAGAT-CAGTAATTGA
1 GCACTATGTGTGC-AAATCCTTTAATCGA
*
25290786 GGCACTGTGTGTGCAAACTCCTTTAATCGA
1 -GCACTATGTGTGCAAA-TCCTTTAATCGA
25290816 GCACTATGTGTGC
1 GCACTATGTGTGC
25290829 GAGATCAGTA
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
28 8 0.15
29 38 0.69
30 9 0.16
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCAAATCCTTTAATCGA
Found at i:25290794 original size:58 final size:58
Alignment explanation
Indices: 25290726--25290891 Score: 271
Period size: 58 Copynumber: 2.9 Consensus size: 58
25290716 CGAATGATTA
25290726 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* *
25290784 GAGGCACTGTGTGTGCAAACTCCTTTAATCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* * * *
25290842 GAGGCACTGTGTGTGCGAGTT-CTTCAACTGAGCACTATGTGTGCGAGATC
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATC
25290892 GGTCAGTGGG
Statistics
Matches: 100, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
57 26 0.26
58 74 0.74
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
Found at i:25290848 original size:29 final size:28
Alignment explanation
Indices: 25290756--25290891 Score: 132
Period size: 29 Copynumber: 4.8 Consensus size: 28
25290746 TCCTTTAACC
25290756 GAGCACTATGTGTGCGAGATCAGTAATT
1 GAGCACTATGTGTGCGAGATCAGTAATT
* * ** *
25290784 GAGGCACTGTGTGTGC-AAACTCCTTTAATC
1 GA-GCACTATGTGTGCGAGA-T-CAGTAATT
25290814 GAGCACTATGTGTGCGAGATCAGTAATT
1 GAGCACTATGTGTGCGAGATCAGTAATT
* * * *
25290842 GAGGCACTGTGTGTGCGAGTTC-TTCAACT
1 GA-GCACTATGTGTGCGAGATCAGT-AATT
25290871 GAGCACTATGTGTGCGAGATC
1 GAGCACTATGTGTGCGAGATC
25290892 GGTCAGTGGG
Statistics
Matches: 86, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
28 29 0.34
29 48 0.56
30 9 0.10
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (28 bp):
GAGCACTATGTGTGCGAGATCAGTAATT
Found at i:25290904 original size:28 final size:27
Alignment explanation
Indices: 25290816--25290912 Score: 86
Period size: 28 Copynumber: 3.4 Consensus size: 27
25290806 CTTTAATCGA
* *
25290816 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATC-GTCACTG-G
* * * *
25290845 GCACTGTGTGTGCGAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGATCGTC-ACTGG
*
25290873 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATC-GTCACTGG
*
25290901 GCACTAAGTGTG
1 GCACTATGTGTG
25290913 TGAAATGAGA
Statistics
Matches: 54, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
28 32 0.59
29 22 0.41
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.28
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATCGTCACTGG
Found at i:25295860 original size:20 final size:20
Alignment explanation
Indices: 25295835--25295873 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
25295825 ACTTATCATG
25295835 ATAGTAAATAATAACATGTA
1 ATAGTAAATAATAACATGTA
25295855 ATAGTAAATAATAACATGT
1 ATAGTAAATAATAACATGT
25295874 GGTAAATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (20 bp):
ATAGTAAATAATAACATGTA
Found at i:25295878 original size:17 final size:18
Alignment explanation
Indices: 25295831--25295881 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 18
25295821 ACTAACTTAT
25295831 CATGATAGTAAATAATAA
1 CATGATAGTAAATAATAA
25295849 CATGTAATAGTAAATAATAA
1 CATG--ATAGTAAATAATAA
*
25295869 CATG-TGGTAAATA
1 CATGATAGTAAATA
25295882 CATGTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 8 0.27
18 4 0.13
20 18 0.60
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (18 bp):
CATGATAGTAAATAATAA
Found at i:25296143 original size:3 final size:3
Alignment explanation
Indices: 25296137--25296181 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
25296127 AACATGTTTT
25296137 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
25296182 TAAACATAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:25305317 original size:126 final size:126
Alignment explanation
Indices: 25305092--25305334 Score: 364
Period size: 126 Copynumber: 1.9 Consensus size: 126
25305082 TGACCTGCAG
* *
25305092 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGATAATTCCCATAG
1 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGACAATTCCCACAG
* *
25305157 CCCTTCTAAGTTGGAAGTGCTTGAAGGTGGAAATGATGAA-TCAGTGACAAAATCAGTTAGC
66 CCCTTCTAACTTGGAAGTGCTTGAAGGAGGAAATGAT-AAGTCAGTGACAAAATCAGTTAGC
* * *
25305218 AATAAGCAGCGAGATGTTCAGGTTCCTTCACTTGATGGAAAGCTGGGGAAGGACAATGT-CGACA
1 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGACAAT-TCCCACA
* * *
25305282 GCCCTTCTAACTTGGATGTGGTTGAAGGAGGAAATGATAAGTCTGTGACAAAA
65 GCCCTTCTAACTTGGAAGTGCTTGAAGGAGGAAATGATAAGTCAGTGACAAAA
25305335 CCAATTACCA
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
125 2 0.02
126 102 0.97
127 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.25
Consensus pattern (126 bp):
AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGACAATTCCCACAG
CCCTTCTAACTTGGAAGTGCTTGAAGGAGGAAATGATAAGTCAGTGACAAAATCAGTTAGC
Found at i:25310910 original size:10 final size:10
Alignment explanation
Indices: 25310890--25310948 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
25310880 AAATTTAGCT
*
25310890 TTTATATTTA
1 TTTATCTTTA
*
25310900 TTTATCCTTA
1 TTTATCTTTA
25310910 TTTATCTTTA
1 TTTATCTTTA
*
25310920 ATTATCTTTA
1 TTTATCTTTA
25310930 TTTAT-TTATA
1 TTTATCTT-TA
25310940 TTTATCTTT
1 TTTATCTTT
25310949 TAGAATTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 38 0.90
11 2 0.05
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:25313668 original size:15 final size:16
Alignment explanation
Indices: 25313648--25313681 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
25313638 TAACTATATG
25313648 TATGCTAATA-ATCTA
1 TATGCTAATATATCTA
25313663 TATGCTAATATATCTA
1 TATGCTAATATATCTA
25313679 TAT
1 TAT
25313682 ACATATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (16 bp):
TATGCTAATATATCTA
Found at i:25316879 original size:16 final size:16
Alignment explanation
Indices: 25316858--25316888 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25316848 GAGAAGAACC
25316858 AAATAAAAATAAAAAT
1 AAATAAAAATAAAAAT
*
25316874 AAATAATAATAAAAA
1 AAATAAAAATAAAAA
25316889 ATTAACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AAATAAAAATAAAAAT
Found at i:25318317 original size:3 final size:3
Alignment explanation
Indices: 25318309--25318370 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
25318299 AAACACAATA
25318309 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
25318357 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
25318371 CAACGGCGTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:25318466 original size:16 final size:16
Alignment explanation
Indices: 25318441--25318486 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
25318431 AGGAATAATA
* *
25318441 AATAAGTAAATAAATG
1 AATAAATAAATAAAAG
25318457 AATAAATAAATAAAAG
1 AATAAATAAATAAAAG
25318473 AATTAAAATAAATA
1 AA-T-AAATAAATA
25318487 GAAGCCTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 16 0.62
17 1 0.04
18 9 0.35
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.24
Consensus pattern (16 bp):
AATAAATAAATAAAAG
Found at i:25318486 original size:4 final size:4
Alignment explanation
Indices: 25318437--25318470 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
25318427 ACAAAGGAAT
* *
25318437 AATA AATA AGTA AATA AATG AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA
25318471 AGAATTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:25321359 original size:22 final size:23
Alignment explanation
Indices: 25321327--25321370 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
25321317 AATCACTTTA
25321327 ATATTAAATT-AATATAATATTT
1 ATATTAAATTAAATATAATATTT
* *
25321349 ATATTAGATTAAATTTAATATT
1 ATATTAAATTAAATATAATATT
25321371 AAATCTTAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
ATATTAAATTAAATATAATATTT
Found at i:25321510 original size:37 final size:37
Alignment explanation
Indices: 25321399--25321510 Score: 119
Period size: 37 Copynumber: 3.0 Consensus size: 37
25321389 CAACAAGACA
25321399 AATATTAAATTAA-ATTAAA--TATTAAGATAATAACTCT
1 AATATTAAATTAATATTAAATCTATTAAGATAAT-A-T-T
25321436 AATATTAAATTAATA-T-AATACTATTAAGATAAGTATT
1 AATATTAAATTAATATTAAAT-CTATTAAGATAA-TATT
*
25321473 AA-ATTAAATTTAATATTAAATCTATTAAAATAATATT
1 AATATTAAA-TTAATATTAAATCTATTAAGATAATATT
25321510 A
1 A
25321511 TTTTTCAAAT
Statistics
Matches: 66, Mismatches: 1, Indels: 16
0.80 0.01 0.19
Matches are distributed among these distances:
36 8 0.12
37 28 0.42
38 14 0.21
39 15 0.23
40 1 0.02
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.40
Consensus pattern (37 bp):
AATATTAAATTAATATTAAATCTATTAAGATAATATT
Found at i:25322734 original size:12 final size:12
Alignment explanation
Indices: 25322717--25322741 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25322707 TTTTGGATGA
25322717 ATTTGATTAAAT
1 ATTTGATTAAAT
25322729 ATTTGATTAAAT
1 ATTTGATTAAAT
25322741 A
1 A
25322742 AGTTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATTTGATTAAAT
Found at i:25323110 original size:43 final size:43
Alignment explanation
Indices: 25323060--25323189 Score: 172
Period size: 43 Copynumber: 3.0 Consensus size: 43
25323050 CATAGGATTC
25323060 CGATTTGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
1 CGATTTGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
* *
25323103 CGATTTGTGGTTTACGTGTAAGACC-CTGTCTGGGACAGTGGCAT
1 CGATTTGTGATTT-CGTGTAAGACCAC-GTCTGGGACATTGGCAT
* * * * *
25323147 CAATATGTGATTACATGTAAGATCACGTCTGGGACATTGGCAT
1 CGATTTGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
25323190 TGTACTAGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
43 38 0.51
44 37 0.49
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
CGATTTGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
Found at i:25327451 original size:20 final size:20
Alignment explanation
Indices: 25327428--25327466 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
25327418 TTAGGTCTAA
25327428 TTATT-AATATTATTAATATT
1 TTATTAAAT-TTATTAATATT
25327448 TTATTAAATTTATTAATAT
1 TTATTAAATTTATTAATAT
25327467 AACATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTATTAAATTTATTAATATT
Found at i:25330015 original size:2 final size:2
Alignment explanation
Indices: 25330010--25330039 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
25330000 ACACACACAC
25330010 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25330040 GTTTCTCCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25333384 original size:12 final size:12
Alignment explanation
Indices: 25333367--25333392 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25333357 GGTTGAAACT
25333367 GAAAAAAAAAAA
1 GAAAAAAAAAAA
25333379 GAAAAAAAAAAA
1 GAAAAAAAAAAA
25333391 GA
1 GA
25333393 GTAACCAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (12 bp):
GAAAAAAAAAAA
Found at i:25347354 original size:3 final size:3
Alignment explanation
Indices: 25347341--25347391 Score: 86
Period size: 3 Copynumber: 17.0 Consensus size: 3
25347331 CATAAACTAA
25347341 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
25347389 AAT
1 AAT
25347392 TAATCAAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 41 0.89
4 3 0.07
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:25349115 original size:2 final size:2
Alignment explanation
Indices: 25349108--25349150 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
25349098 TGCAACAATC
** *
25349108 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT GC AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25349149 AT
1 AT
25349151 GTATTGAACT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:25350579 original size:22 final size:22
Alignment explanation
Indices: 25350551--25350596 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
25350541 ATAAAAAAAG
25350551 AAAGGAAATTCTACAATAACAA
1 AAAGGAAATTCTACAATAACAA
25350573 AAAGGAAATTCTACAATAACAA
1 AAAGGAAATTCTACAATAACAA
25350595 AA
1 AA
25350597 TAATAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.61, C:0.13, G:0.09, T:0.17
Consensus pattern (22 bp):
AAAGGAAATTCTACAATAACAA
Found at i:25352692 original size:43 final size:44
Alignment explanation
Indices: 25352628--25352714 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 44
25352618 AAAAAATGAA
* *
25352628 TAAATTAATCCATGTATATTAGAT-AAAAAATAAATTAGTCGTT
1 TAAATTAATCCATGTACATTAGATCAAAAAACAAATTAGTCGTT
*
25352671 TAAATTAATTCATGTACATTAGATCAAAAAACAAATTAGTCGTT
1 TAAATTAATCCATGTACATTAGATCAAAAAACAAATTAGTCGTT
25352715 ATCTATTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 22 0.55
44 18 0.45
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (44 bp):
TAAATTAATCCATGTACATTAGATCAAAAAACAAATTAGTCGTT
Found at i:25354780 original size:22 final size:23
Alignment explanation
Indices: 25354755--25354799 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
25354745 GAAGTAGAAG
* *
25354755 AGAACGGAAAA-AAAAAGTTAAA
1 AGAACAGAAAAGAAAAAATTAAA
*
25354777 AGAACATAAAAGAAAAAATTAAA
1 AGAACAGAAAAGAAAAAATTAAA
25354800 TTACTCAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.71, C:0.04, G:0.13, T:0.11
Consensus pattern (23 bp):
AGAACAGAAAAGAAAAAATTAAA
Found at i:25356700 original size:31 final size:31
Alignment explanation
Indices: 25356665--25356736 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
25356655 TTATGTAACA
* * *
25356665 TATATAATTGAATCAAAATTAAAATTTTATT
1 TATATAATTGAACCAAAATCAAAATTTGATT
* * *
25356696 TATATATTTGAACCGAAATCAAAGTTTGATT
1 TATATAATTGAACCAAAATCAAAATTTGATT
25356727 TATATAATTG
1 TATATAATTG
25356737 CACAATTGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (31 bp):
TATATAATTGAACCAAAATCAAAATTTGATT
Found at i:25356962 original size:40 final size:40
Alignment explanation
Indices: 25356907--25356984 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
25356897 TATTACCTAT
*
25356907 AAACTTTCTTGATCATTAAATCGAAGGATAATACGTGCAC
1 AAACTTTCTTGATCATTAAATCGAAAGATAATACGTGCAC
25356947 AAACTTTCTTGATCATTAAATCGAAAGATAATACGTGC
1 AAACTTTCTTGATCATTAAATCGAAAGATAATACGTGC
25356985 TTTAATGCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (40 bp):
AAACTTTCTTGATCATTAAATCGAAAGATAATACGTGCAC
Found at i:25359681 original size:12 final size:12
Alignment explanation
Indices: 25359664--25359688 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25359654 AGTCACACTT
25359664 ATTTTTAATTAA
1 ATTTTTAATTAA
25359676 ATTTTTAATTAA
1 ATTTTTAATTAA
25359688 A
1 A
25359689 AGGAGCAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTTTAATTAA
Found at i:25365804 original size:19 final size:19
Alignment explanation
Indices: 25365777--25365825 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
25365767 AAATATAAAA
25365777 TTTGAAATTTTTATAAA-TAT
1 TTTG-AATTTTTA-AAATTAT
*
25365797 TTTGAATTTTGAAAATTAT
1 TTTGAATTTTTAAAATTAT
25365816 TTTG-ATTTTT
1 TTTGAATTTTT
25365826 TTTGTAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 8 0.31
19 14 0.54
20 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (19 bp):
TTTGAATTTTTAAAATTAT
Found at i:25365993 original size:14 final size:14
Alignment explanation
Indices: 25365968--25366004 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
25365958 CTCAAAACTC
*
25365968 GAATTGAGTTATTT
1 GAATTGACTTATTT
*
25365982 GGATTGACTTATTT
1 GAATTGACTTATTT
25365996 GAATTGACT
1 GAATTGACT
25366005 CAAATAATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (14 bp):
GAATTGACTTATTT
Found at i:25368286 original size:89 final size:91
Alignment explanation
Indices: 25368187--25368380 Score: 245
Period size: 91 Copynumber: 2.1 Consensus size: 91
25368177 GCCTTTAAAT
* *
25368187 TTTTTCAAAAAAAGT-AATTAAG-CCTTGCTTTTTTTTT-CACTCATTTG-GATACTTGAACTTT
1 TTTTT-AAAAAAAATCAATTAAGCCCTTG-TTTTTTTTTGCACTCAATTGAG-TACTTGAACTTT
*
25368248 CAAAATGTATCAAAAAGACCCTCAAA-CC
63 CAAAATGCATCAAAAAGACCCTCAAACCC
* *
25368276 TTTTTAAAAAAAATCAATTAAGCCCCTTGTTTTTTTTTGCACTCAATTGAGTCCTTGAACTTTTA
1 TTTTTAAAAAAAATCAATTAAG-CCCTTGTTTTTTTTTGCACTCAATTGAGTACTTGAACTTTCA
* *
25368341 AAATGCATCAAAATGACTCTCAAACCC
65 AAATGCATCAAAAAGACCCTCAAACCC
*
25368368 TTTTCAAAAAAAA
1 TTTTTAAAAAAAA
25368381 AAAAAGGCTT
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
88 8 0.09
89 12 0.13
90 9 0.10
91 47 0.52
92 15 0.16
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.37
Consensus pattern (91 bp):
TTTTTAAAAAAAATCAATTAAGCCCTTGTTTTTTTTTGCACTCAATTGAGTACTTGAACTTTCAA
AATGCATCAAAAAGACCCTCAAACCC
Found at i:25368401 original size:91 final size:90
Alignment explanation
Indices: 25368188--25368403 Score: 208
Period size: 91 Copynumber: 2.4 Consensus size: 90
25368178 CCTTTAAATT
** * * *
25368188 TTTTCAAAAAAAGTAATTAAGCC--TTGCTTTTTTTTTCACTCATTTGGATACTTGAACTTTCAA
1 TTTTCAAAAAAAACAATAAAGCCAATTGCTTTTTTTTGCACTCAATTGGATACTTGAACTTTCAA
*
25368251 AATGTATCAAAAAGACCCTCAAACC
66 AATGCATCAAAAAGACCCTCAAACC
* * ** * * *
25368276 TTTTTAAAAAAAATCAATTAAGCCCCTTGTTTTTTTTTGCACTCAATT-GAGTCCTTGAACTTTT
1 TTTTCAAAAAAAA-CAATAAAGCCAATTGCTTTTTTTTGCACTCAATTGGA-TACTTGAACTTTC
* *
25368340 AAAATGCATCAAAATGACTCTCAAACCC
64 AAAATGCATCAAAAAGACCCTCAAA-CC
*
25368368 TTTTCAAAAAAAA-AA-AAAGGCTTAATTGCTTTTTTT
1 TTTTCAAAAAAAACAATAAA-GC-CAATTGCTTTTTTT
25368404 GAAGAAATTT
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
88 11 0.11
89 11 0.11
90 6 0.06
91 62 0.60
92 14 0.13
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (90 bp):
TTTTCAAAAAAAACAATAAAGCCAATTGCTTTTTTTTGCACTCAATTGGATACTTGAACTTTCAA
AATGCATCAAAAAGACCCTCAAACC
Found at i:25370638 original size:30 final size:29
Alignment explanation
Indices: 25370594--25370668 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 29
25370584 ATGAATTTTT
*
25370594 AAAATTGATA-ATATATAAAATAATTTAAA
1 AAAAATGATATATATATAAAA-AATTTAAA
*
25370623 AAAAATGATATATATAT-AAAAATTTAGA
1 AAAAATGATATATATATAAAAAATTTAAA
* * *
25370651 ACAAATAATATACATATA
1 AAAAATGATATATATATA
25370669 TGTACATAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 21 0.54
29 12 0.31
30 6 0.15
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (29 bp):
AAAAATGATATATATATAAAAAATTTAAA
Found at i:25370669 original size:30 final size:30
Alignment explanation
Indices: 25370594--25370669 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
25370584 ATGAATTTTT
*
25370594 AAAATTGATA-ATATATAAAATAATTTAAA
1 AAAAATGATACATATATAAAATAATTTAAA
*
25370623 AAAAATGATATATATAT-AAA-AATTTAGAA
1 AAAAATGATACATATATAAAATAATTTA-AA
25370652 CAAATAAT-ATACATATAT
1 -AAA-AATGATACATATAT
25370670 GTACATAGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
28 6 0.15
29 14 0.34
30 18 0.44
31 3 0.07
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (30 bp):
AAAAATGATACATATATAAAATAATTTAAA
Found at i:25375760 original size:19 final size:19
Alignment explanation
Indices: 25375736--25375773 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
25375726 TAATAGTTTA
25375736 TTGTTGGCTCTGTTGCATG
1 TTGTTGGCTCTGTTGCATG
25375755 TTGTTGGCTCTGTTGCATG
1 TTGTTGGCTCTGTTGCATG
25375774 CAACCAGGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.05, C:0.16, G:0.32, T:0.47
Consensus pattern (19 bp):
TTGTTGGCTCTGTTGCATG
Done.