Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 94 of 345
Found at i:25670415 original size:16 final size:16
Alignment explanation
Indices: 25670390--25670421 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25670380 CATATTTAAC
25670390 TCAAAAATTAAAAAAA
1 TCAAAAATTAAAAAAA
*
25670406 TCAAATATTAAAAAAA
1 TCAAAAATTAAAAAAA
25670422 AACCCTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (16 bp):
TCAAAAATTAAAAAAA
Found at i:25671561 original size:7 final size:7
Alignment explanation
Indices: 25671551--25671577 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
25671541 TAAAATATTC
25671551 AATTTAA
1 AATTTAA
25671558 AATTTAA
1 AATTTAA
25671565 AATTTAA
1 AATTTAA
25671572 AATTTA
1 AATTTA
25671578 TTTTTTATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTTAA
Found at i:25673635 original size:20 final size:20
Alignment explanation
Indices: 25673608--25673665 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
25673598 TCAGCAAAAT
**
25673608 TCAAAGTATCAATACTCTTG
1 TCAAAGTATCAATACTCTCC
* ** *
25673628 TTAAAGTATTGATACTCCCC
1 TCAAAGTATCAATACTCTCC
25673648 TCAAAGTATCAATACTCT
1 TCAAAGTATCAATACTCT
25673666 ATACAAGGTA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (20 bp):
TCAAAGTATCAATACTCTCC
Found at i:25677303 original size:18 final size:17
Alignment explanation
Indices: 25677263--25677303 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
25677253 CAAGTTTTGC
25677263 ACTTTTTGCAATTTAGT
1 ACTTTTTGCAATTTAGT
*
25677280 ACTTTTTTCAATTTAGT
1 ACTTTTTGCAATTTAGT
*
25677297 CCTTTTT
1 ACTTTTT
25677304 ACTAAATTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.20, C:0.15, G:0.07, T:0.59
Consensus pattern (17 bp):
ACTTTTTGCAATTTAGT
Found at i:25680462 original size:45 final size:44
Alignment explanation
Indices: 25680398--25680493 Score: 183
Period size: 45 Copynumber: 2.2 Consensus size: 44
25680388 TAAGTGACGG
25680398 AAACTTCTCTATATTTTAATAACTAATGGTGTAGTTTACTAAGC
1 AAACTTCTCTATATTTTAATAACTAATGGTGTAGTTTACTAAGC
25680442 AAAACTTCTCTATATTTTAATAACTAATGGTGTAGTTTACTAAGC
1 -AAACTTCTCTATATTTTAATAACTAATGGTGTAGTTTACTAAGC
25680487 AAACTTC
1 AAACTTC
25680494 ATTTAGCGAT
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 7 0.14
45 44 0.86
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (44 bp):
AAACTTCTCTATATTTTAATAACTAATGGTGTAGTTTACTAAGC
Found at i:25682854 original size:20 final size:21
Alignment explanation
Indices: 25682808--25682847 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
25682798 AATTATCAAT
25682808 ATAA-TTAATTATTTTAATAA
1 ATAATTTAATTATTTTAATAA
*
25682828 ATTATTTAA-TATTTTAATAA
1 ATAATTTAATTATTTTAATAA
25682848 TAAATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATAATTTAATTATTTTAATAA
Found at i:25682931 original size:15 final size:15
Alignment explanation
Indices: 25682911--25682968 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 15
25682901 ATTCAATATT
25682911 AATATTTTAATAATA
1 AATATTTTAATAATA
*
25682926 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
25682945 AATATATTAATAATA
1 AATATTTTAATAATA
25682960 AATATTTTA
1 AATATTTTA
25682969 TAGTATAACT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 18 0.51
16 2 0.06
17 4 0.11
18 1 0.03
19 10 0.29
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:25687308 original size:16 final size:17
Alignment explanation
Indices: 25687278--25687310 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
25687268 AAATATTAAA
25687278 TAAAAAAAAGGGTTTGAG
1 TAAAAAAAA-GGTTTGAG
25687296 TAAAAAAAA-GTTTGA
1 TAAAAAAAAGGTTTGA
25687311 CCCTTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (17 bp):
TAAAAAAAAGGTTTGAG
Found at i:25690143 original size:172 final size:172
Alignment explanation
Indices: 25689857--25690200 Score: 643
Period size: 172 Copynumber: 2.0 Consensus size: 172
25689847 TTTACAATTC
*
25689857 ATCCACAAAATAACTATCAATTAGACATCCTAGGTACATGCTGACACAAAAGATAAACATCACCA
1 ATCCACAAAATAACTATCAATTAGACATCCTAGGTACATGCCGACACAAAAGATAAACATCACCA
* *
25689922 CATTTGAGTTCGGGATCGTTGCTAAATGTTGAATCGACGATCAAAAGAGAAGTACCTAACCTGTG
66 CATTTGAGTTCGGGATCGTTGCTAAATGCTGAATCGACGATCAAAAGAGAAGTACCTAACCTATG
25689987 CACAAAAAGCAAAACTGTACGCTGAGTAAAACTCAGTGATAT
131 CACAAAAAGCAAAACTGTACGCTGAGTAAAACTCAGTGATAT
25690029 ATCCACAAAATAACTATCAATTAGACATCCTAGGTACATGCCGACACAAAAGATAAACATCACCA
1 ATCCACAAAATAACTATCAATTAGACATCCTAGGTACATGCCGACACAAAAGATAAACATCACCA
*
25690094 CATTTGAGTTCGGGATTGTTGCTAAATGCTGAATCGACGATCAAAAGAGAAGTACCTAACCTATG
66 CATTTGAGTTCGGGATCGTTGCTAAATGCTGAATCGACGATCAAAAGAGAAGTACCTAACCTATG
*
25690159 CACGAAAAGCAAAACTGTACGCTGAGTAAAACTCAGTGATAT
131 CACAAAAAGCAAAACTGTACGCTGAGTAAAACTCAGTGATAT
25690201 TTCTATATCT
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
172 167 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (172 bp):
ATCCACAAAATAACTATCAATTAGACATCCTAGGTACATGCCGACACAAAAGATAAACATCACCA
CATTTGAGTTCGGGATCGTTGCTAAATGCTGAATCGACGATCAAAAGAGAAGTACCTAACCTATG
CACAAAAAGCAAAACTGTACGCTGAGTAAAACTCAGTGATAT
Found at i:25691524 original size:26 final size:26
Alignment explanation
Indices: 25691495--25691598 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
25691485 TGATACAAAT
25691495 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
25691521 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
25691547 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
25691573 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25691599 AGATGGAAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:25696756 original size:21 final size:21
Alignment explanation
Indices: 25696731--25696808 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
25696721 AATAGTCATC
*
25696731 ATCAGGTGCCTCGGGTGTGGA
1 ATCAGGTGACTCGGGTGTGGA
*
25696752 ATCAGGTGATTCGGGTGTGGA
1 ATCAGGTGACTCGGGTGTGGA
* *
25696773 ATCAGGTGATTCGGTTGTGGA
1 ATCAGGTGACTCGGGTGTGGA
*
25696794 ATCGGGTGACTCGGG
1 ATCAGGTGACTCGGG
25696809 CGTATCAGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.17, C:0.14, G:0.42, T:0.27
Consensus pattern (21 bp):
ATCAGGTGACTCGGGTGTGGA
Found at i:25699109 original size:31 final size:32
Alignment explanation
Indices: 25699066--25699125 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
25699056 AATATTAAAT
*
25699066 TTTTATATTAAATTATATTCAAAGATTTTTTA
1 TTTTATATTAAATTATATTAAAAGATTTTTTA
*
25699098 TTTT-TATTAAATTATATTAAAATATTTT
1 TTTTATATTAAATTATATTAAAAGATTTT
25699126 ATACTTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 22 0.85
32 4 0.15
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (32 bp):
TTTTATATTAAATTATATTAAAAGATTTTTTA
Found at i:25701355 original size:40 final size:41
Alignment explanation
Indices: 25701280--25701373 Score: 106
Period size: 40 Copynumber: 2.3 Consensus size: 41
25701270 CGACCATGCT
* * *
25701280 TGGCACTAAGTGTGCGGTTTAATATAGCTTTGGCTACA-AA
1 TGGCACTAAGTGTGAGATTTAATATAGCTTCGGCTACATAA
*
25701320 TGGCACTAAGTGTGAGATTTGGAATA-A-CTTCGGCTATATAA
1 TGGCACTAAGTGTGAGATTT--AATATAGCTTCGGCTACATAA
25701361 -GGCACTAAGTGTG
1 TGGCACTAAGTGTG
25701374 CGATACCGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
40 40 0.85
41 3 0.06
42 4 0.09
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (41 bp):
TGGCACTAAGTGTGAGATTTAATATAGCTTCGGCTACATAA
Found at i:25703085 original size:46 final size:46
Alignment explanation
Indices: 25703035--25703127 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
25703025 ACTTAAAATG
25703035 ATTTATATTTAGTTTATTTGAGTATCATATAAAAACAACTAAAAGT
1 ATTTATATTTAGTTTATTTGAGTATCATATAAAAACAACTAAAAGT
*
25703081 ATTTATATTTAGTTTATTTGGGTATCATATAAAAACAACTAAAAGT
1 ATTTATATTTAGTTTATTTGAGTATCATATAAAAACAACTAAAAGT
25703127 A
1 A
25703128 AGAAAAAAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (46 bp):
ATTTATATTTAGTTTATTTGAGTATCATATAAAAACAACTAAAAGT
Found at i:25703249 original size:32 final size:32
Alignment explanation
Indices: 25703212--25703276 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
25703202 CTTAATAAAG
25703212 TATAAAAATATAATGAAAATAATGAATCATGA
1 TATAAAAATATAATGAAAATAATGAATCATGA
25703244 TATAAAAATATAATGAAAATAATGAATCATGA
1 TATAAAAATATAATGAAAATAATGAATCATGA
25703276 T
1 T
25703277 GCTAATATGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.58, C:0.03, G:0.09, T:0.29
Consensus pattern (32 bp):
TATAAAAATATAATGAAAATAATGAATCATGA
Found at i:25703275 original size:16 final size:16
Alignment explanation
Indices: 25703224--25703275 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
25703214 TAAAAATATA
25703224 ATGAAAATAATGAATC
1 ATGAAAATAATGAATC
* *
25703240 ATGATATAAAAAT--ATA
1 ATGA-A-AATAATGAATC
25703256 ATGAAAATAATGAATC
1 ATGAAAATAATGAATC
25703272 ATGA
1 ATGA
25703276 TGCTAATATG
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
14 5 0.18
15 1 0.04
16 16 0.57
17 1 0.04
18 5 0.18
ACGTcount: A:0.58, C:0.04, G:0.12, T:0.27
Consensus pattern (16 bp):
ATGAAAATAATGAATC
Found at i:25705095 original size:44 final size:43
Alignment explanation
Indices: 25705040--25705647 Score: 346
Period size: 44 Copynumber: 13.6 Consensus size: 43
25705030 TCATTCCAAC
* * * *
25705040 CCACTGTAACTTCAGGGGTATAGGACTTGCCA-CTTCAATCTACT
1 CCACTGCAACTTCAGGGG-ATAAGACTTG-TAGCTTCAATCTGCT
25705084 CCACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAATCTGCT
1 CCACTGCAACTTCAGGG-GATAAGACTT-GTAGCTTCAATCTGCT
* * *
25705128 CCACTGCAACTTCAGAGAGATAAGATTTGTAGCATCAATCTGCT
1 CCACTGCAACTTCAG-GGGATAAGACTTGTAGCTTCAATCTGCT
* * * * * * *
25705172 CTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCGATCTACT
1 CCACTGCAACTTCAG-GGGATAAGACTTG-TAGCTTCAATCTGCT
* *
25705217 CCACTGCAACTTCAGGGAGATAAG-GTCTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAGGG-GATAAGACT-TGTAGCTTCAATCTGCT
* * * * * *
25705261 CCACTGTAACTACAGGGAGATAAGATTTGTAATTTATAACTTTAATCTGTT
1 CCACTGCAACTTCAGGG-GATAAGACTTG-------TAGCTTCAATCTGCT
* ** * *
25705312 CCACTACAACTTCAGGAAAATAAGA-TTCGCTATCTTCAGTCTGCT
1 CCACTGCAACTTCAGG-GGATAAGACTT-G-TAGCTTCAATCTGCT
** * * *
25705357 CCACTGCAACTTCAAGAAGATGAGACTTGTAACTTCAACCTGCT
1 CCACTGCAACTTC-AGGGGATAAGACTTGTAGCTTCAATCTGCT
* * * ** * * *
25705401 CCACTACAACTTTAGAGAGATAAGGTTTATAGCTTTAATCTACT
1 CCACTGCAACTTCAG-GGGATAAGACTTGTAGCTTCAATCTGCT
* * * * * ** *
25705445 CTACTGCAACATCAGAGAGATAAGATTTTATATTTTCAATCTGTT
1 CCACTGCAACTTCAG-GGGATAAGA-CTTGTAGCTTCAATCTGCT
* * * *
25705490 CCATTGCAACTTCAGAGAGATAAGACTTGTTATCTTCAACCTGCT
1 CCACTGCAACTTCAG-GGGATAAGACTTG-TAGCTTCAATCTGCT
* * * *
25705535 CCATTGCAACTTCAGGGAGATAATA-TATGTAACTTCAACCTGCT
1 CCACTGCAACTTCAGGG-GATAAGACT-TGTAGCTTCAATCTGCT
* * * *
25705579 CCACTGCAACTTCAGAGAGATAA-AGTTTATAGCTTTAATCTGCT
1 CCACTGCAACTTCAG-GGGATAAGA-CTTGTAGCTTCAATCTGCT
*
25705623 CCACTACAACTTCAGGGAGATAAGA
1 CCACTGCAACTTCAGGG-GATAAGA
25705648 TTCGCCATGA
Statistics
Matches: 453, Mismatches: 81, Indels: 59
0.76 0.14 0.10
Matches are distributed among these distances:
43 7 0.02
44 266 0.59
45 141 0.31
46 4 0.01
50 2 0.00
51 33 0.07
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30
Consensus pattern (43 bp):
CCACTGCAACTTCAGGGGATAAGACTTGTAGCTTCAATCTGCT
Found at i:25705255 original size:89 final size:88
Alignment explanation
Indices: 25705072--25705649 Score: 555
Period size: 89 Copynumber: 6.4 Consensus size: 88
25705062 GGACTTGCCA
* * *
25705072 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTCCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCAA
*
25705137 CTTCAGAGAGATAAGATTTGTAG
66 CTTCAGAGAGATAAGGTTTGTAG
* * * * * *
25705160 CATCAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCGATCTACTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTCAATCTGCTCCACTGCA
* * *
25705225 ACTTCAGGGAGATAAGGTCTGTAA
65 ACTTCAGAGAGATAAGGTTTGTAG
* * * *
25705249 CTTCAATCTGCTCCACTGTAACTACAGGGAGATAAGATTTGTAATTTATAACTTTAATCTGTTCC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-----TAT--CTTCAATCTGCTCC
* * * * *
25705314 ACTACAACTTCAG-GAAAATAAGATTCGCTAT
59 ACTGCAACTTCAGAG-AGATAAGGTTTG-TAG
* * * * * * * *
25705345 CTTCAGTCTGCTCCACTGCAACTTCAAGAAGATGAGACTTGTAACTTCAACCTGCTCCACTACAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCAA
* *
25705410 CTTTAGAGAGATAAGGTTTATAG
66 CTTCAGAGAGATAAGGTTTGTAG
* * * * * * * * *
25705433 CTTTAATCTACTCTACTGCAACATCAGAGAGATAAGATTTTATATTTTCAATCTGTTCCATTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTGTATCTTCAATCTGCTCCACTGCA
** *
25705498 ACTTCAGAGAGATAAGACTTGTTAT
65 ACTTCAGAGAGATAAGGTTTG-TAG
* * * * * *
25705523 CTTCAACCTGCTCCATTGCAACTTCAGGGAGATAATATATGTAACTTCAACCTGCTCCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCAA
* *
25705588 CTTCAGAGAGATAAAGTTTATAG
66 CTTCAGAGAGATAAGGTTTGTAG
* *
25705611 CTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
25705650 CGCCATGATG
Statistics
Matches: 383, Mismatches: 95, Indels: 24
0.76 0.19 0.05
Matches are distributed among these distances:
88 100 0.26
89 179 0.47
90 32 0.08
91 2 0.01
93 3 0.01
94 1 0.00
95 30 0.08
96 36 0.09
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (88 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCAA
CTTCAGAGAGATAAGGTTTGTAG
Found at i:25705516 original size:133 final size:133
Alignment explanation
Indices: 25705072--25705647 Score: 568
Period size: 133 Copynumber: 4.3 Consensus size: 133
25705062 GGACTTGCCA
* * *
25705072 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAATCTGCTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAACCTGCTCCACTGCA
* * * * *
25705136 ACTTCAGAGAGATAAGATTTGTAGCATCAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTG
65 ACTTCAGAGAGATAAGATTTATAACTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG
*
25705201 CTAT
130 ATAT
* * * * *
25705205 CTTCGATCTACTCCACTGCAACTTCAGGGAGATAAG-GTCTGTAACTTCAATCTGCTCCACTGTA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGTAACTTCAACCTGCTCCACTGCA
* * * * * *
25705269 ACTACAGGGAGATAAGATTTGTAATTTATAACTTTAATCTGTTCCACTACAACTTCAG-GAAAAT
65 ACTTCAGAGAGAT-A-A---G--ATTTATAACTTCAATCTGCTCCACTGCAACTTCAGAG-AGAT
* *
25705333 AAGATTCGCTAT
122 AAGATTTGATAT
* * * * *
25705345 CTTCAGTCTGCTCCACTGCAACTTCAAGAAGATGAGACTTGTAACTTCAACCTGCTCCACTACAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * * * * * *
25705410 CTTTAGAGAGATAAGGTTTATAGCTTTAATCTACTCTACTGCAACATCAGAGAGATAAGATTTTA
66 CTTCAGAGAGATAAGATTTATAACTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGA
25705475 TAT
131 TAT
* * * * * *
25705478 TTTCAATCTGTTCCATTGCAACTTCAGAGAGATAAGACTTGTTATCTTCAACCTGCTCCATTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCAACCTGCTCCACTGCA
* * * * *
25705543 ACTTCAGGGAGATAATATATGTAACTTCAACCTGCTCCACTGCAACTTCAGAGAGATAA-AGTTT
65 ACTTCAGAGAGATAAGATTTATAACTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGA-TTT
*
25705607 -ATAG
129 GATAT
* *
25705611 CTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
25705648 TTCGCCATGA
Statistics
Matches: 360, Mismatches: 69, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
133 177 0.49
134 73 0.20
135 2 0.01
138 2 0.01
139 2 0.01
140 103 0.29
141 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (133 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAA
CTTCAGAGAGATAAGATTTATAACTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGA
TAT
Found at i:25707406 original size:22 final size:22
Alignment explanation
Indices: 25707381--25707425 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
25707371 AATAATATAC
25707381 TTAGGCAACCAAACATCCACAA
1 TTAGGCAACCAAACATCCACAA
*
25707403 TTAGGCAACCAAACTTCCACAA
1 TTAGGCAACCAAACATCCACAA
25707425 T
1 T
25707426 CATGGCTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.31, G:0.09, T:0.18
Consensus pattern (22 bp):
TTAGGCAACCAAACATCCACAA
Found at i:25722497 original size:21 final size:20
Alignment explanation
Indices: 25722458--25722497 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
25722448 TATGTATGAG
25722458 TTTTGATGATTGATGATAGA
1 TTTTGATGATTGATGATAGA
* *
25722478 TTTTGAATGGTTGTTGATAG
1 TTTTG-ATGATTGATGATAG
25722498 TTAAACAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (20 bp):
TTTTGATGATTGATGATAGA
Found at i:25725608 original size:42 final size:42
Alignment explanation
Indices: 25725560--25725734 Score: 178
Period size: 42 Copynumber: 4.0 Consensus size: 42
25725550 CTTCATTTTC
** * *
25725560 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
* *
25725603 T-GATGCCACAGCCCAGTTATGGTCTTACACATATTCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
25725644 TCGATGCCATAGCCCAGCTAT-GTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCACATA
*
25725692 TCGATGCCATATCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
25725733 TC
1 TC
25725735 TCACTGATTC
Statistics
Matches: 113, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
41 20 0.18
42 50 0.44
43 2 0.02
44 2 0.02
47 3 0.03
48 27 0.24
49 9 0.08
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:25725691 original size:48 final size:48
Alignment explanation
Indices: 25725630--25725765 Score: 179
Period size: 48 Copynumber: 2.9 Consensus size: 48
25725620 TATGGTCTTA
25725630 CACATATTCACATATCGATGCCATAGCCCAGCTAT-GTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
25725679 CACATATCACATATCGATGCCATATCCCAGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * *
25725727 CACATATCTCA-CT-GATTCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
25725766 TACAGTAGCA
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
46 24 0.30
47 1 0.01
48 40 0.49
49 16 0.20
ACGTcount: A:0.30, C:0.29, G:0.12, T:0.29
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:25725869 original size:31 final size:31
Alignment explanation
Indices: 25725834--25725942 Score: 182
Period size: 31 Copynumber: 3.5 Consensus size: 31
25725824 CTTGTCACTT
25725834 GTAGCCGAAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCATTTTTCACTGATCAG
* *
25725865 GTAGCCGGAGCTACCATTTTTCACTGATCAA
1 GTAGCCGAAGCTACCATTTTTCACTGATCAG
* *
25725896 GTAGCCAAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCATTTTTCACTGATCAG
25725927 GTAGCCGAAGCTACCA
1 GTAGCCGAAGCTACCA
25725943 GCCGAAGCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCATTTTTCACTGATCAG
Found at i:25738603 original size:2 final size:2
Alignment explanation
Indices: 25738596--25738627 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
25738586 AGGGGCCGAC
25738596 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25738628 GTTTAAAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25741195 original size:20 final size:19
Alignment explanation
Indices: 25741166--25741210 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
25741156 ATTAGAATGT
*
25741166 AAAAATTAAATTAAAAACA
1 AAAAATTAAAATAAAAACA
*
25741185 AAAATATTAAAATAAAAATA
1 AAAA-ATTAAAATAAAAACA
25741205 AAAAAT
1 AAAAAT
25741211 GGCAAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAATTAAAATAAAAACA
Found at i:25743464 original size:50 final size:51
Alignment explanation
Indices: 25743382--25743511 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 51
25743372 GGACCATGGC
* *
25743382 AACAAGTGATAAGTGATAGCTTCGGCTGCACTTATCTGATCAAGGACAAAT
1 AACAAGTGATAAGTGATAGCTTCGGCTACACTTATATGATCAAGGACAAAT
* * *
25743433 GA-AAGTGATAAGTAATAGCTTCGGCTACACTTATATGATCAATGACAAAT
1 AACAAGTGATAAGTGATAGCTTCGGCTACACTTATATGATCAAGGACAAAT
* * *
25743483 AACAAGTGAAAAGTGGTAGCTCCGGCTAC
1 AACAAGTGATAAGTGATAGCTTCGGCTAC
25743512 CTGATCAGTG
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 45 0.66
51 23 0.34
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (51 bp):
AACAAGTGATAAGTGATAGCTTCGGCTACACTTATATGATCAAGGACAAAT
Found at i:25743525 original size:31 final size:31
Alignment explanation
Indices: 25743487--25743697 Score: 307
Period size: 31 Copynumber: 6.8 Consensus size: 31
25743477 ACAAATAACA
25743487 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
25743518 AGTGAAAAATGGTAGCTCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
25743549 AGTGAAAAGTGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* * **
25743580 AGTGAAAAGTCGTAGCTTCTACTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
**
25743611 AGTGAAAAGTGGTAGCTCTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
25743642 AGTGAAAAGTGGTAGCTCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
25743673 AATGAATAA-TGGTAGCTCCGGCTAC
1 AGTGAA-AAGTGGTAGCTCCGGCTAC
25743698 AAGTGACAAG
Statistics
Matches: 161, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
31 159 0.99
32 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:25743786 original size:47 final size:46
Alignment explanation
Indices: 25743717--25743927 Score: 139
Period size: 47 Copynumber: 4.6 Consensus size: 46
25743707 GTGATTTCCA
* * *
25743717 TATAAGACCATATCTAGGATATGGCATCGGTGTGATATATGCTACTG
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATAC-G
* * * *
25743764 TATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTCG
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACG
* * * * * * *
25743810 TGTAAGATCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACG
1 TATAAGACCATATCTGGGATATGGCATCG--GTGAGATATATGA-TACG
* * *
25743859 TGTAAGACCATAGT-T-GGCTATGGCATC-----GATATATGAATATG
1 TATAAGACCATA-TCTGGGATATGGCATCGGTGAGATATATG-ATACG
* * *
25743900 TGTAAGACCATAGCTGGGCTATGGCATC
1 TATAAGACCATATCTGGGATATGGCATC
25743928 ATTATGTGAA
Statistics
Matches: 136, Mismatches: 21, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
41 23 0.17
42 13 0.10
46 24 0.18
47 38 0.28
48 23 0.17
49 15 0.11
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACG
Found at i:25743842 original size:41 final size:41
Alignment explanation
Indices: 25743797--25743970 Score: 133
Period size: 41 Copynumber: 4.0 Consensus size: 41
25743787 ACATCAGTGA
*
25743797 GATATGTGATTCGTGTAAGATCATAGCTGGGCTATGGCATC
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATC
*
25743838 GATATGTGATATGTGATTACGTGTAAGACCATAG-TTGGCTATGGCATC
1 -------GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATC
*
25743886 GATATATGAATAT-GTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTG-AT-TCGTGTAAGACCATAGCTGGGCTATGGCATC
* * **
25743928 -ATTATGTGAAGAT-GTGTAAG-CCATAGTTGAACTATGGCATC
1 GA-TATGTG-A-TTCGTGTAAGACCATAGCTGGGCTATGGCATC
25743969 GA
1 GA
25743971 GAAAACGAAG
Statistics
Matches: 110, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
41 40 0.36
42 31 0.28
43 1 0.01
48 24 0.22
49 14 0.13
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (41 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:25743854 original size:48 final size:48
Alignment explanation
Indices: 25743766--25743936 Score: 182
Period size: 48 Copynumber: 3.7 Consensus size: 48
25743756 TGCTACTGTA
* * * * *
25743766 TAAGACCATATCTGGGATATGACATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
*
25743812 TAAGATCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT-CGTG
* *
25743861 TAAGACCATAG-TTGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
25743902 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
25743937 AGATGTGTAA
Statistics
Matches: 109, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
41 15 0.14
42 19 0.17
43 1 0.01
44 1 0.01
45 1 0.01
46 22 0.20
47 2 0.02
48 34 0.31
49 14 0.13
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.31
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
Found at i:25743943 original size:42 final size:41
Alignment explanation
Indices: 25743858--25743970 Score: 140
Period size: 41 Copynumber: 2.7 Consensus size: 41
25743848 ATGTGATTAC
* *
25743858 GTGTAAGACCATAGTTGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGTGGGCTATGGCATCGATATATGAAGAT
*
25743899 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAG-TGGGCTATGGCATCGA-TATATGAAGAT
**
25743941 GTGTAAG-CCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAG-TGGGCTATGGCATCGA
25743971 GAAAACGAAG
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
41 33 0.52
42 30 0.48
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCATAGTGGGCTATGGCATCGATATATGAAGAT
Found at i:25747252 original size:3 final size:3
Alignment explanation
Indices: 25747244--25747286 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
25747234 TGCCTTGTAT
25747244 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
25747287 ATATATGTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:25752317 original size:21 final size:21
Alignment explanation
Indices: 25752293--25752333 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
25752283 AAGTACTCAA
25752293 GCAGACATTTTTATTACTATG
1 GCAGACATTTTTATTACTATG
*
25752314 GCAGACCTTTTTATTACTAT
1 GCAGACATTTTTATTACTAT
25752334 CTAAAGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (21 bp):
GCAGACATTTTTATTACTATG
Found at i:25760535 original size:31 final size:31
Alignment explanation
Indices: 25760494--25760554 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
25760484 TAAAATGATC
*
25760494 ATTGAGCTATTCA-AAAGTTTTCATTTAAGTT
1 ATTGAACTATT-ATAAAGTTTTCATTTAAGTT
*
25760525 ATTGAACTATTATAAAGTTTTTATTTAAGT
1 ATTGAACTATTATAAAGTTTTCATTTAAGT
25760555 CACTGAGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTGAACTATTATAAAGTTTTCATTTAAGTT
Found at i:25761690 original size:27 final size:27
Alignment explanation
Indices: 25761660--25761715 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
25761650 TATTTTGAAC
25761660 AAGCCTCTAGATTTGAATGAATAACCT
1 AAGCCTCTAGATTTGAATGAATAACCT
25761687 AAGCCTCTAGATTTGAATGAATAACCT
1 AAGCCTCTAGATTTGAATGAATAACCT
25761714 AA
1 AA
25761716 CCCACGAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (27 bp):
AAGCCTCTAGATTTGAATGAATAACCT
Found at i:25763164 original size:18 final size:18
Alignment explanation
Indices: 25763141--25763399 Score: 73
Period size: 18 Copynumber: 14.6 Consensus size: 18
25763131 GGAATGAAAT
25763141 TGGAGGTGGTAGAGGTGG
1 TGGAGGTGGTAGAGGTGG
* *
25763159 TGGAGGTGG-AGGTGGAGG
1 TGGAGGTGGTA-GAGGTGG
25763177 TGGAGG-GGTTAGAGGTGG
1 TGGAGGTGG-TAGAGGTGG
* **
25763195 TGGAGG-AGTAGGAGCAGG
1 TGGAGGTGGTA-GAGGTGG
* * *
25763213 TGGGGGTGG-AGGTGGAGG
1 TGGAGGTGGTA-GAGGTGG
*
25763231 TGGAGGT-GCA-A-GTGG
1 TGGAGGTGGTAGAGGTGG
*
25763246 T---GGTGCTAG-GGATGG
1 TGGAGGTGGTAGAGG-TGG
* *
25763261 TGGAGGAGGT-GTTGGTGG
1 TGGAGGTGGTAG-AGGTGG
* * *
25763279 TGGTGGAGG-AGGAGGTGC
1 TGGAGGTGGTA-GAGGTGG
25763297 TGGA-GTGGGT-GTAGGTGG
1 TGGAGGT-GGTAG-AGGTGG
* * *
25763315 TGGTGGTGGTGTCGGGGTTGG
1 TGGAGGT-G-GTAGAGG-TGG
* *
25763336 TGGAGG-AGTAGGAGTTGG
1 TGGAGGTGGTA-GAGGTGG
* *
25763354 TGGTGGTGGTAGCGGTGG
1 TGGAGGTGGTAGAGGTGG
* *
25763372 TGGAGGTGTTAGGGGTGG
1 TGGAGGTGGTAGAGGTGG
25763390 TGGAGGTGGT
1 TGGAGGTGGT
25763400 GTTGGCGGAG
Statistics
Matches: 176, Mismatches: 39, Indels: 52
0.66 0.15 0.19
Matches are distributed among these distances:
12 3 0.02
13 1 0.01
14 1 0.01
15 8 0.05
17 9 0.05
18 127 0.72
19 14 0.08
20 4 0.02
21 9 0.05
ACGTcount: A:0.14, C:0.02, G:0.61, T:0.23
Consensus pattern (18 bp):
TGGAGGTGGTAGAGGTGG
Found at i:25763168 original size:6 final size:6
Alignment explanation
Indices: 25763157--25763238 Score: 69
Period size: 6 Copynumber: 13.7 Consensus size: 6
25763147 TGGTAGAGGT
* * * *
25763157 GGTGGA GGTGGA GGTGGA GGTGGA GG-GGTTA -GAGGT GGTGGA GGAGTA
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGG--A GGTGGA GGTGGA GGTGGA
* * *
25763205 GGAGCA GGTGGG GGTGGA GGTGGA GGTGGA GGTG
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTG
25763239 CAAGTGGTGG
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
5 2 0.03
6 57 0.92
7 3 0.05
ACGTcount: A:0.17, C:0.01, G:0.65, T:0.17
Consensus pattern (6 bp):
GGTGGA
Found at i:25763214 original size:36 final size:36
Alignment explanation
Indices: 25763141--25763221 Score: 101
Period size: 36 Copynumber: 2.2 Consensus size: 36
25763131 GGAATGAAAT
* * *
25763141 TGGAGGTGGTAGAGGTGGTGGAGGTGGAGGTGGAGG
1 TGGAGGTGGTAGAGGTGGTGGAGGAGGAGGAGCAGG
*
25763177 TGGAGG-GGTTAGAGGTGGTGGAGGAGTAGGAGCAGG
1 TGGAGGTGG-TAGAGGTGGTGGAGGAGGAGGAGCAGG
*
25763213 TGGGGGTGG
1 TGGAGGTGG
25763222 AGGTGGAGGT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
35 2 0.05
36 34 0.89
37 2 0.05
ACGTcount: A:0.17, C:0.01, G:0.63, T:0.19
Consensus pattern (36 bp):
TGGAGGTGGTAGAGGTGGTGGAGGAGGAGGAGCAGG
Found at i:25763271 original size:24 final size:21
Alignment explanation
Indices: 25763190--25763325 Score: 62
Period size: 21 Copynumber: 6.3 Consensus size: 21
25763180 AGGGGTTAGA
* *
25763190 GGTGGTGGAGGA-GTAGGAGCA
1 GGTGGTGGAGGAGGT-GGTGCT
* * * *
25763211 GGTGGGGGTGGAGGTGGAGGT
1 GGTGGTGGAGGAGGTGGTGCT
* * * *
25763232 GGAGGTGCAAGTGGTGGTGCT
1 GGTGGTGGAGGAGGTGGTGCT
* *
25763253 AGGGATGGTGGAGGAGGTGTTGGT
1 --GG-TGGTGGAGGAGGTGGTGCT
*
25763277 GGTGGTGGAGGAGGAGGTGCT
1 GGTGGTGGAGGAGGTGGTGCT
* *
25763298 GG-AGTGG-GTGTAGGTGGTGGT
1 GGTGGTGGAG-G-AGGTGGTGCT
25763319 GGTGGTG
1 GGTGGTG
25763326 TCGGGGTTGG
Statistics
Matches: 83, Mismatches: 25, Indels: 13
0.69 0.21 0.11
Matches are distributed among these distances:
19 1 0.01
20 5 0.06
21 55 0.66
22 7 0.08
23 2 0.02
24 13 0.16
ACGTcount: A:0.14, C:0.03, G:0.61, T:0.22
Consensus pattern (21 bp):
GGTGGTGGAGGAGGTGGTGCT
Found at i:25763394 original size:129 final size:129
Alignment explanation
Indices: 25763242--25763542 Score: 396
Period size: 129 Copynumber: 2.4 Consensus size: 129
25763232 GGAGGTGCAA
* * * *
25763242 GTGGTGGTGCTAGGGATGGTGGAGGAGGTGTTGGTGGTGGTGGAGGAGGAGGTGCTGGAGTGGGT
1 GTGGAGGTGCTAGGGATGGTGGAGGAGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGGGT
* * * *
25763307 GTAGGTGGTGGTGGTGGTGTCGGGGTTGGTGGAGGAGTAGGAGTTGGTGGTGGTGGTAGCGGTG
66 GCAGGTAGTGGTGGTGGTGTCGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTAGCGGTG
* * *
25763371 GTGGAGGTGTTAGGGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGGGT
1 GTGGAGGTGCTAGGGATGGTGGAGGAGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGGGT
* *
25763436 GCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGG-A--GGTG
66 GCAGGTAGTGGTGGTGGTGTCGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTAGCGGTG
* * * *
25763497 TTAGG-GGTGGT-GGAAGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGG
1 GT-GGAGGTGCTAGGGA-TGGTGGAGGAGGTGTTGGCGGAGGTGCAGG
25763543 TATTGGTGGT
Statistics
Matches: 153, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
125 2 0.01
126 40 0.26
127 2 0.01
128 1 0.01
129 108 0.71
ACGTcount: A:0.12, C:0.04, G:0.59, T:0.25
Consensus pattern (129 bp):
GTGGAGGTGCTAGGGATGGTGGAGGAGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGGGT
GCAGGTAGTGGTGGTGGTGTCGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTAGCGGTG
Found at i:25763398 original size:36 final size:36
Alignment explanation
Indices: 25763259--25763399 Score: 105
Period size: 36 Copynumber: 3.9 Consensus size: 36
25763249 TGCTAGGGAT
* *
25763259 GGTGGAGGAGGTGTT-GGTGGTGGTGGAGGAGG-A-
1 GGTGGTGGAGGTGTTAGGTGGTGGTGGAGGTGGTAG
* * * *
25763292 GGTGCTGGAGTGGGTGTAGGTGGTGGTGGTGGT-GTCGG
1 GGTGGTGGAG-GTGT-TAGGTGGTGGTGGAGGTGGT-AG
* * * *
25763330 GGTTGGTGGAGGAG-TAGGAGTTGGTGGTGGTGGTAG
1 GG-TGGTGGAGGTGTTAGGTGGTGGTGGAGGTGGTAG
25763366 CGGTGGTGGAGGTGTTAGG-GGTGGTGGAGGTGGT
1 -GGTGGTGGAGGTGTTAGGTGGTGGTGGAGGTGGT
25763400 GTTGGCGGAG
Statistics
Matches: 84, Mismatches: 14, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
33 8 0.10
34 3 0.04
35 2 0.02
36 52 0.62
37 8 0.10
38 4 0.05
39 7 0.08
ACGTcount: A:0.11, C:0.02, G:0.61, T:0.26
Consensus pattern (36 bp):
GGTGGTGGAGGTGTTAGGTGGTGGTGGAGGTGGTAG
Found at i:25763465 original size:18 final size:18
Alignment explanation
Indices: 25763444--25763490 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
25763434 GTGCAGGTAT
* *
25763444 TGGTGGTGGTGTTGGGGC
1 TGGTGGTGGTGTAGGAGC
* *
25763462 TGGTGGAGGAGTAGGAGC
1 TGGTGGTGGTGTAGGAGC
25763480 TGGTGGTGGTG
1 TGGTGGTGGTG
25763491 GAGGTGTTAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.09, C:0.04, G:0.60, T:0.28
Consensus pattern (18 bp):
TGGTGGTGGTGTAGGAGC
Found at i:25763496 original size:9 final size:9
Alignment explanation
Indices: 25763484--25763526 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
25763474 AGGAGCTGGT
25763484 GGTGGTGGA
1 GGTGGTGGA
*
25763493 GGTGTTAGG-
1 GGTGGT-GGA
25763502 GGTGGTGGA
1 GGTGGTGGA
*
25763511 AGTGGTGGA
1 GGTGGTGGA
25763520 GGTGGTG
1 GGTGGTG
25763527 TTGGCGGAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 2 0.07
9 24 0.86
10 2 0.07
ACGTcount: A:0.12, C:0.00, G:0.63, T:0.26
Consensus pattern (9 bp):
GGTGGTGGA
Found at i:25763536 original size:42 final size:41
Alignment explanation
Indices: 25763386--25763538 Score: 109
Period size: 42 Copynumber: 3.7 Consensus size: 41
25763376 GGTGTTAGGG
** *
25763386 GTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGA
1 GTGGTGGAGGTGGTGTTGGCGGAGGTG--TTAGG-GGTGGTGGA
* * * *
25763430 GTGGGTGCA---GGTATTGGTGGTGGTGTT-GGGGCTGGTGGA
1 GT-GGTGGAGGTGGTGTTGGCGGAGGTGTTAGGGG-TGGTGGA
* * *
25763469 G-GAGTAGGAGCTGGTGGTGGTGGAGGTGTTAGGGGTGGTGGAA
1 GTG-GT-GGAGGTGGTGTTGGCGGAGGTGTTAGGGGTGGTGG-A
25763512 GTGGTGGAGGTGGTGTTGGCGGAGGTG
1 GTGGTGGAGGTGGTGTTGGCGGAGGTG
25763539 CAGGTATTGG
Statistics
Matches: 85, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
37 1 0.01
38 4 0.05
39 11 0.13
42 53 0.62
43 8 0.09
44 3 0.04
45 5 0.06
ACGTcount: A:0.12, C:0.05, G:0.59, T:0.25
Consensus pattern (41 bp):
GTGGTGGAGGTGGTGTTGGCGGAGGTGTTAGGGGTGGTGGA
Found at i:25763553 original size:102 final size:99
Alignment explanation
Indices: 25763433--25763641 Score: 346
Period size: 102 Copynumber: 2.1 Consensus size: 99
25763423 TGCTGGAGTG
25763433 GGTGCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGT
1 GGTGCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTG-
* * *
25763498 TAGGGGTGGTGGAAGTGGTGGAGGTGGTGTTGGCGGA
65 --GAGGTGCTAGAAGTGGTGGAGGTGGTGTTGGCGGA
*
25763535 GGTGCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGTTGGTGGTGGTGGAGGTGG
1 GGTGCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGG
*
25763600 AGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGA
66 AGGTGCTAGAAGTGGTGGAGGTGGTGTTGGCGGA
25763634 GGTGCAGG
1 GGTGCAGG
25763642 AGGAGGTGCT
Statistics
Matches: 102, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
99 39 0.38
102 63 0.62
ACGTcount: A:0.12, C:0.04, G:0.58, T:0.26
Consensus pattern (99 bp):
GGTGCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGG
AGGTGCTAGAAGTGGTGGAGGTGGTGTTGGCGGA
Found at i:25763586 original size:60 final size:60
Alignment explanation
Indices: 25763486--25763703 Score: 192
Period size: 60 Copynumber: 3.6 Consensus size: 60
25763476 GAGCTGGTGG
* * *
25763486 TGGTGGAGGTGTTAGGGG-TGGTGGAAGTG-GT-GGAGGTGGTGTTGGCGGAGGTGCAGGTAT
1 TGGTGGTGGTGTT-GGGGCTGGTGG-AG-GAGTAGGAGGTGGTGCTGGAGGAGGTGCAGGTAT
* * * * *
25763546 TGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGTTGGTGGTGGTGGAGGTGGAGGTGCTAG
1 TGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGGTGGTGCTGGAGGAGGTGCA-G-G-TAT
* * * * * * * * *
25763609 AGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTG-GGTGCAGGTAT
1 TGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGGTGGTGCTGGAG-GAGGTGCAGGTAT
25763669 TGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAG
1 TGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAG
25763704 CTAGTGGGGG
Statistics
Matches: 123, Mismatches: 28, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
58 1 0.01
59 8 0.07
60 67 0.54
61 2 0.02
62 2 0.02
63 42 0.34
64 1 0.01
ACGTcount: A:0.13, C:0.04, G:0.58, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGGTGGTGCTGGAGGAGGTGCAGGTAT
Found at i:25763598 original size:9 final size:9
Alignment explanation
Indices: 25763583--25763625 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
25763573 AGTAGGAGTT
*
25763583 GGTGGTGGT
1 GGTGGTGGA
*
25763592 GGAGGTGGA
1 GGTGGTGGA
* *
25763601 GGTGCTAGA
1 GGTGGTGGA
25763610 GGTGGTGGA
1 GGTGGTGGA
25763619 GGTGGTG
1 GGTGGTG
25763626 TTGGCGGAGG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.12, C:0.02, G:0.63, T:0.23
Consensus pattern (9 bp):
GGTGGTGGA
Found at i:25763619 original size:225 final size:224
Alignment explanation
Indices: 25763304--25764168 Score: 800
Period size: 225 Copynumber: 3.9 Consensus size: 224
25763294 TGCTGGAGTG
* * * *
25763304 GGTGTAGGTGGTGGTGGTGGTGTCGGGGTTGGTGGAGGAGTAGGAGTTGGTGGTGGTGGTAGCGG
1 GGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGG-A----
* *
25763369 TGGTGGAGGTGTTAGGGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGG
61 -GGTGGAGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGG
25763434 GTGCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGTT
125 GTGCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTG-T
* *
25763499 AGGGGTGGTGGAAGTGGTGGAGGTGGTGTTGGCGGA
189 AGGGGTGGTGGAGGTGCTGGAGGTGGTGTTGGCGGA
* * *
25763535 GGTGCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGTTGGTGGTGGTGGAGGTGG
1 GGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGG
25763600 AGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGGGTGCAG
66 AGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGGGTGCAG
* * * *
25763665 GTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTAGTGGGGGTGGAGGTGGAGGTGGA
131 GTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGTAGG-GGT
* *
25763730 GGTGCAGGTGCT--A-G-GG-G-TGGTGGA
195 GGTGGAGGTGCTGGAGGTGGTGTTGGCGGA
* * * * * ** * * * ** *
25763754 GGT---GGTGTTGGCGGAGGTGTAGGAGG-AGGAGCTGGAGTGGGTGCAGGTATTGGTGGTGGTG
1 GGTGCAGGTGTTGGTGGTGGTGTTGG-GGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTG
* * * * * ** * * * *
25763815 GTGGTGGTGGAGATGCTGGAAATGGTGTTGGTGGAGGTGCAGGAGGAGGTGCAGGTGTTGGT---
65 GAGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGGGTGCA
* * * * * *
25763877 GG---TGGTGGTGGGGTTGGTGG-AGGAGTAGGAGCT-GGTGGTGGTGGTGGTGGAGGTGCTAGG
130 GGTATTGGTGGTGGTGTTGG-GGCTGGTGGAGGAG-TAGGAGCTGGTGGTGGTGGAGGTG-TAGG
25763937 GGTGGTGGAGGTGCTGGAGGTGGTGTTGGTGGAGGTGCTGGA
192 GGTGGTGGAGGTGCTGGAGGTGGTG-T--T----G-GC-GGA
*
25763979 GGGGGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGG
1 ---GGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGG
* * *
25764044 TGGAGGTGCTAGGGGTGGTGGAGGTGGTGTT------GGT------GGAGGTGTTGGAGCGGGTG
63 TGGAGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGGGTG
* * * *
25764097 CTGGTGTTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGCTGGTGGTGGAGGTGCAGGA
128 CAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGTAGG-
25764162 GGTGGTG
192 GGTGGTG
25764169 TTGGTGGTGG
Statistics
Matches: 512, Mismatches: 86, Indels: 78
0.76 0.13 0.12
Matches are distributed among these distances:
210 53 0.10
211 6 0.01
212 1 0.00
213 3 0.01
214 2 0.00
215 1 0.00
216 91 0.18
217 2 0.00
219 23 0.04
220 1 0.00
221 2 0.00
222 3 0.01
223 2 0.00
224 10 0.02
225 188 0.37
228 3 0.01
230 3 0.01
231 118 0.23
ACGTcount: A:0.12, C:0.05, G:0.58, T:0.25
Consensus pattern (224 bp):
GGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGG
AGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGGTGCTGGAGTGGGTGCAG
GTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGTAGGGGTG
GTGGAGGTGCTGGAGGTGGTGTTGGCGGA
Found at i:25763648 original size:36 final size:35
Alignment explanation
Indices: 25763512--25763655 Score: 88
Period size: 36 Copynumber: 4.3 Consensus size: 35
25763502 GGTGGTGGAA
*
25763512 GTGGTGGAGGTGGTGTTGGCGGAGGTGCAG-GTA-
1 GTGGTGGAGGTGGTGTTGGCGGAGGTGCAGAGGAG
* * * *
25763545 -T--TGGTGGTGGTGTTGG-GGCTGGTGGAGGAGTAG
1 GTGGTGGAGGTGGTGTTGGCGG-AGGTGCA-GAGGAG
* * * ** * *
25763578 GAGTTGGTGGTGGTGGAGGTGGAGGTGC-TA-GAG
1 GTGGTGGAGGTGGTGTTGGCGGAGGTGCAGAGGAG
25763611 GTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAG
1 GTGGTGGAGGTGGTGTTGGCGGAGGTGCA-GAGGAG
*
25763647 GTGCTGGAG
1 GTGGTGGAG
25763656 TGGGTGCAGG
Statistics
Matches: 82, Mismatches: 18, Indels: 19
0.69 0.15 0.16
Matches are distributed among these distances:
29 2 0.02
30 19 0.23
31 1 0.01
32 4 0.05
33 24 0.29
34 1 0.01
35 1 0.01
36 28 0.34
37 2 0.02
ACGTcount: A:0.12, C:0.05, G:0.58, T:0.24
Consensus pattern (35 bp):
GTGGTGGAGGTGGTGTTGGCGGAGGTGCAGAGGAG
Found at i:25763716 original size:6 final size:6
Alignment explanation
Indices: 25763707--25763758 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
25763697 GTAGGAGCTA
* * * *
25763707 GTGGGG GTGGAG GTGGAG GTGGAG GTGCAG GTGCTAG G-GGTG GTGGAG
1 GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG GTG-GAG GTGGAG GTGGAG
25763755 GTGG
1 GTGG
25763759 TGTTGGCGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
5 2 0.05
6 33 0.87
7 3 0.08
ACGTcount: A:0.12, C:0.04, G:0.65, T:0.19
Consensus pattern (6 bp):
GTGGAG
Found at i:25763743 original size:36 final size:36
Alignment explanation
Indices: 25763688--25763758 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
25763678 TGTTGGGGCT
*
25763688 GGTGGAGGAGTAGGAGCTAGTGGG-GGTGGAGGTGGA
1 GGTGGAGGAGCAGGAGCTAG-GGGTGGTGGAGGTGGA
* *
25763724 GGTGGAGGTGCAGGTGCTAGGGGTGGTGGAGGTGG
1 GGTGGAGGAGCAGGAGCTAGGGGTGGTGGAGGTGG
25763759 TGTTGGCGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 3 0.10
36 28 0.90
ACGTcount: A:0.15, C:0.04, G:0.62, T:0.18
Consensus pattern (36 bp):
GGTGGAGGAGCAGGAGCTAGGGGTGGTGGAGGTGGA
Found at i:25763760 original size:12 final size:12
Alignment explanation
Indices: 25763707--25764112 Score: 64
Period size: 12 Copynumber: 33.8 Consensus size: 12
25763697 GTAGGAGCTA
*
25763707 GTGGGGGTGGAG
1 GTGGTGGTGGAG
*
25763719 GTGGAGGTGGAG
1 GTGGTGGTGGAG
** *
25763731 GTGCAGGTGCTAG
1 GTGGTGGTG-GAG
25763744 G-GGTGGTGGAG
1 GTGGTGGTGGAG
* *
25763755 GTGGTGTTGGCG
1 GTGGTGGTGGAG
*
25763767 GAGGT-GTAGGAG
1 GTGGTGGT-GGAG
* * *
25763779 GAGGAGCTGGA-
1 GTGGTGGTGGAG
*
25763790 GT-G-GGTGCAG
1 GTGGTGGTGGAG
*
25763800 GTATTGGTGGTGGTG
1 G---TGGTGGTGGAG
25763815 GTGGTGGTGGAG
1 GTGGTGGTGGAG
* * **
25763827 ATGCTGG-AAATG
1 GTGGTGGTGGA-G
*
25763839 GTGTTGGTGGAG
1 GTGGTGGTGGAG
** *
25763851 GTGCAGGAGGAG
1 GTGGTGGTGGAG
** **
25763863 GTGCAGGTGTTG
1 GTGGTGGTGGAG
*
25763875 GTGGTGGTGGTG
1 GTGGTGGTGGAG
25763887 G-GGTTGGTGGAG
1 GTGG-TGGTGGAG
* * **
25763899 G-AGTAGGAGCTG
1 GTGGT-GGTGGAG
*
25763911 GTGGTGGTGGTG
1 GTGGTGGTGGAG
* *
25763923 GTGGAGGTGCTAG
1 GTGGTGGTG-GAG
25763936 G-GGTGGTGGAG
1 GTGGTGGTGGAG
* * *
25763947 GTGCTGGAGGTG
1 GTGGTGGTGGAG
*
25763959 GTGTTGGTGGAG
1 GTGGTGGTGGAG
* * *
25763971 GTGCTGGAGGGG
1 GTGGTGGTGGAG
** **
25763983 GTGCAGGTGTTG
1 GTGGTGGTGGAG
**
25763995 GTGGTGGTGTTG
1 GTGGTGGTGGAG
25764007 G-GGTTGGTGGAG
1 GTGG-TGGTGGAG
* * **
25764019 G-AGTAGGAGCTG
1 GTGGT-GGTGGAG
*
25764031 GTGGTGGTGGTG
1 GTGGTGGTGGAG
* *
25764043 GTGGAGGTGCTAG
1 GTGGTGGTG-GAG
25764056 G-GGTGGTGGAG
1 GTGGTGGTGGAG
* *
25764067 GTGGTGTTGGTG
1 GTGGTGGTGGAG
* *
25764079 GAGGTGTTGGAG
1 GTGGTGGTGGAG
* *
25764091 CG-GGTGCTGGTG
1 -GTGGTGGTGGAG
*
25764103 TTGGTGGTGG
1 GTGGTGGTGG
25764113 TGTTGGGGCT
Statistics
Matches: 284, Mismatches: 86, Indels: 48
0.68 0.21 0.11
Matches are distributed among these distances:
9 4 0.01
10 2 0.01
11 18 0.06
12 238 0.84
13 15 0.05
14 1 0.00
15 6 0.02
ACGTcount: A:0.11, C:0.04, G:0.59, T:0.26
Consensus pattern (12 bp):
GTGGTGGTGGAG
Found at i:25763860 original size:135 final size:134
Alignment explanation
Indices: 25763583--25763907 Score: 412
Period size: 135 Copynumber: 2.5 Consensus size: 134
25763573 AGTAGGAGTT
* * *
25763583 GGTGGTGGTGGAGGTGGAGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGCAGGAGGAGG
1 GGTGGAGGTGGAGGTGCAGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGTAGGAGGAGG
* **
25763648 TGCTGGAGTGGGTGCAGGTATTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTAGTGGGG
66 AGCTGGAGTGGGTGCAGGTATTGGTGGTGGTG-TGGGGCTGGTGGAGGAGTAGGAAATAGTGGGG
25763713 GTGGA
130 GTGGA
*
25763718 GGTGGAGGTGGAGGTGCAGGTGCTAGGGGTGGTGGAGGTGGTGTTGGCGGAGGTGTAGGAGGAGG
1 GGTGGAGGTGGAGGTGCAGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGTAGGAGGAGG
* * **
25763783 AGCTGGAGTGGGTGCAGGTATTGGTGGTGGTG-GTGG-TGGTGGA-GATGCT-GGAAATGGTGTT
66 AGCTGGAGTGGGTGCAGGTATTGGTGGTGGTGTGGGGCTGGTGGAGGA-G-TAGGAAATAGTGGG
25763844 GGTGGA
129 GGTGGA
* * * * * * *
25763850 GGTGCAGGAGGAGGTGCAGGTG-T--TGGTGGTGGTGGTGGGGTTGGTGGAGGAGTAGGAG
1 GGTGGAGGTGGAGGTGCAGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGTAGGAG
25763908 CTGGTGGTGG
Statistics
Matches: 170, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
129 30 0.18
131 3 0.02
132 41 0.24
133 4 0.02
135 92 0.54
ACGTcount: A:0.14, C:0.05, G:0.58, T:0.23
Consensus pattern (134 bp):
GGTGGAGGTGGAGGTGCAGGTGCTAGAGGTGGTGGAGGTGGTGTTGGCGGAGGTGTAGGAGGAGG
AGCTGGAGTGGGTGCAGGTATTGGTGGTGGTGTGGGGCTGGTGGAGGAGTAGGAAATAGTGGGGG
TGGA
Found at i:25763865 original size:24 final size:24
Alignment explanation
Indices: 25763811--25763985 Score: 100
Period size: 24 Copynumber: 7.3 Consensus size: 24
25763801 TATTGGTGGT
* * *
25763811 GGTGGTGGTGGTGGAGATGCTGGA
1 GGTGGTGTTGGTGGAGGTGCAGGA
**
25763835 AATGGTGTTGGTGGAGGTGCAGGA
1 GGTGGTGTTGGTGGAGGTGCAGGA
* ** ** ** *
25763859 GGAGGTGCAGGTGTTGGTGGTGGT
1 GGTGGTGTTGGTGGAGGTGCAGGA
* * *
25763883 GGTGGGGTTGGTGGAGGAGTAGGA
1 GGTGGTGTTGGTGGAGGTGCAGGA
* * * * *
25763907 GCTGGTGGTGGTGGTGGTGGAGGT
1 GGTGGTGTTGGTGGAGGTGCAGGA
* * *
25763931 GCTAGG-GGTGGTGGAGGTGCTGGA
1 GGT-GGTGTTGGTGGAGGTGCAGGA
*
25763955 GGTGGTGTTGGTGGAGGTGCTGGA
1 GGTGGTGTTGGTGGAGGTGCAGGA
*
25763979 GGGGGTG
1 GGTGGTG
25763986 CAGGTGTTGG
Statistics
Matches: 110, Mismatches: 39, Indels: 4
0.72 0.25 0.03
Matches are distributed among these distances:
23 2 0.02
24 106 0.96
25 2 0.02
ACGTcount: A:0.11, C:0.04, G:0.59, T:0.25
Consensus pattern (24 bp):
GGTGGTGTTGGTGGAGGTGCAGGA
Found at i:25763907 original size:48 final size:49
Alignment explanation
Indices: 25763841--25763947 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 49
25763831 TGGAAATGGT
* * * * *
25763841 GTTGGTGGAGGTGCAGGAGGAGGTGCAGGTGTTGGTGGTGGTGGT-GGG
1 GTTGGTGGAGGAGCAGGAGCAGGTGCAGGTGGTGGTGGAGGTGCTAGGG
* * **
25763889 GTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGAGGTGCTAGGG
1 GTTGGTGGAGGAGCAGGAGCAGGTGCAGGTGGTGGTGGAGGTGCTAGGG
25763938 G-TGGTGGAGG
1 GTTGGTGGAGG
25763948 TGCTGGAGGT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 45 0.92
49 4 0.08
ACGTcount: A:0.11, C:0.04, G:0.61, T:0.24
Consensus pattern (49 bp):
GTTGGTGGAGGAGCAGGAGCAGGTGCAGGTGGTGGTGGAGGTGCTAGGG
Found at i:25763913 original size:72 final size:71
Alignment explanation
Indices: 25763793--25764240 Score: 246
Period size: 72 Copynumber: 6.1 Consensus size: 71
25763783 AGCTGGAGTG
* ** *
25763793 GGTGCAGGTATTGGTGGTGGTGGT--GGTGGTGGA-GATGCT-GGAAATGGTGTTGGTGGAGGTG
1 GGTGCAGGTGTTGGTGGTGGTGGTGGGGTGGTGGAGGA-G-TAGGAGCTGGTGGTGGTGGAGGTG
*
25763854 CAGGAGGA
64 CAGGAGGT
25763862 GGTGCAGGTGTTGGTGGTGGTGGTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGG
1 GGTGCAGGTGTTGGTGGTGGTGGTGGGG-TGGTGGAGGAGTAGGAGC------TGGTGGTGGTGG
25763927 AGGTGCTAGG-GGT
59 AGGTGC-AGGAGGT
* * * * * ** ** * * * * *
25763940 GGTGGAGGTGCTGGAGGTGGTGTTGGTGGAGGTGCTGGAGGGGGTGCAGGTGTTGGTGGTGGTGT
1 GGTGCAGGTGTTGGTGGTGGTGGTGG-GGTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGC
*
25764005 TGG-GGTT
65 AGGAGG-T
* * * * * * * *
25764012 GGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGAGGTGCTAGGGGTGGTGGAGGTGGTGTTGG
1 GGTGCAGGTGTTGGTGGTGGTGGTGG-GGTGGTGGA-G-G--A---GT--AGGAGCTGGTGGTGG
**
25764077 TGGAGGTGTTGGAGCG-
56 TGGAGGTGCAGGAG-GT
* * *
25764093 GGTGCTGGTGTTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGCTGGTGGTGGAGGTGC
1 GGTGCAGGTGTTGGTGGTGGTGGTGGGG-TGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGC
25764158 AGGAGGT
65 AGGAGGT
** * * * *
25764165 GGTGTTGGTGGTGGTGCTGG-GGCTGGGGCTGGTGGAGGAGTAGGAGGTGGTGGTGGTGGAAGTG
1 GGTGCAGGTGTTGGTGGTGGTGG-TGGGG-TGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTG
*
25764229 TAGGAGGT
64 CAGGAGGT
25764237 GGTG
1 GGTG
25764241 TTGGTGGAGG
Statistics
Matches: 296, Mismatches: 55, Indels: 53
0.73 0.14 0.13
Matches are distributed among these distances:
69 23 0.08
71 9 0.03
72 143 0.48
73 3 0.01
74 3 0.01
76 1 0.00
77 1 0.00
78 53 0.18
79 7 0.02
80 3 0.01
81 48 0.16
82 1 0.00
83 1 0.00
ACGTcount: A:0.10, C:0.04, G:0.59, T:0.26
Consensus pattern (71 bp):
GGTGCAGGTGTTGGTGGTGGTGGTGGGGTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGAGGTGCA
GGAGGT
Found at i:25763915 original size:30 final size:30
Alignment explanation
Indices: 25763879--25764127 Score: 139
Period size: 30 Copynumber: 8.2 Consensus size: 30
25763869 GTGTTGGTGG
*
25763879 TGGTGGTGGGGTTGGTGGAGGAGTAGGAGC
1 TGGTGGTGGGGTTGGTGGAGGTGTAGGAGC
*
25763909 TGGTGGTGGTGG-TGGTGGAGGTGCTAGG-GG
1 TGGTGGTGG-GGTTGGTGGAGGTG-TAGGAGC
* * * * * * * *
25763939 TGGTGGAGGTGCTGGAGGTGGTGTTGGTGG
1 TGGTGGTGGGGTTGGTGGAGGTGTAGGAGC
* * * * * * *
25763969 AGGTGCTGGAGG-GGGTGCAGGTGTTGGTGG
1 TGGTGGTGG-GGTTGGTGGAGGTGTAGGAGC
* *
25763999 TGGTGTTGGGGTTGGTGGAGGAGTAGGAGC
1 TGGTGGTGGGGTTGGTGGAGGTGTAGGAGC
*
25764029 TGGTGGTGGTGG-TGGTGGAGGTGCTAGG-GG
1 TGGTGGTGG-GGTTGGTGGAGGTG-TAGGAGC
* *
25764059 TGGTGGAGGTGGTGTTGGTGGAGGTGTTGGAGC
1 TGGT---GGTGGGGTTGGTGGAGGTGTAGGAGC
* * * * * *
25764092 GGGTGCTGGTGTTGGTGGTGGTGTTGGGGC
1 TGGTGGTGGGGTTGGTGGAGGTGTAGGAGC
25764122 TGGTGG
1 TGGTGG
25764128 AGGAGTAGGA
Statistics
Matches: 171, Mismatches: 35, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
29 6 0.04
30 128 0.75
31 13 0.08
32 4 0.02
33 20 0.12
ACGTcount: A:0.08, C:0.04, G:0.60, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGGGTTGGTGGAGGTGTAGGAGC
Found at i:25763919 original size:42 final size:43
Alignment explanation
Indices: 25763850--25764046 Score: 137
Period size: 42 Copynumber: 4.8 Consensus size: 43
25763840 TGTTGGTGGA
* * * * *
25763850 GGTGCAGGAGGAGGTGCAGGTGTTGGTGGTGGTGGTGG-GGTT
1 GGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGTGGAGGTT
* * * *
25763892 GGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGAGGTGCTA
1 GGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGTGGAGGTT
* * * * *
25763935 GG-GG-TG-GT-GGAGGTGCTGGAGGTGGTGTTGGTGGAGG-T
1 GGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGTGGAGGTT
* * * * *
25763973 GCTGGAGGGGGT-GCAGGTGTTGGTGGTGGT-GT--TGG-GGTT
1 GGTGGA-GGAGTAGGAGCTGGTGGTGGTGGTGGTGGTGGAGGTT
25764012 GGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGG
1 GGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGG
25764047 AGGTGCTAGG
Statistics
Matches: 117, Mismatches: 28, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
38 7 0.06
39 48 0.41
40 4 0.03
41 3 0.03
42 51 0.44
43 4 0.03
ACGTcount: A:0.10, C:0.04, G:0.60, T:0.26
Consensus pattern (43 bp):
GGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGTGGAGGTT
Found at i:25763952 original size:120 final size:116
Alignment explanation
Indices: 25763817--25764156 Score: 494
Period size: 120 Copynumber: 2.9 Consensus size: 116
25763807 TGGTGGTGGT
*
25763817 GGTGGTGGAGATGCTGGAAATGGTGTTGGTGGAGGTGCAGGAGGAGGTGCAGGTGTTGGTGGTGG
1 GGTGGTGGAG-TGCTGG--ATGGTGTTGGTGGAGGTGCTGGAGG-GGTGCAGGTGTTGGTGGTGG
*
25763882 TGGTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGAGGTGCTAGG
62 TGTTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGAGGTGCTAGG
25763937 GGTGGTGGAGGTGCTGGAGGTGGTGTTGGTGGAGGTGCTGGAGGGGGTGCAGGTGTTGGTGGTGG
1 GGTGGTGGA-GTGCTGGA--TGGTGTTGGTGGAGGTGCTGGA-GGGGTGCAGGTGTTGGTGGTGG
25764002 TGTTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGAGGTGCTAGG
62 TGTTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGAGGTGCTAGG
* *
25764057 GGTGGTGGA-----GG-TGGTGTTGGTGGAGGTGTTGGAGCGGGTGCTGGTGTTGGTGGTGGTGT
1 GGTGGTGGAGTGCTGGATGGTGTTGGTGGAGGTGCTGGAG-GGGTGCAGGTGTTGGTGGTGGTGT
* * *
25764116 TGGGGCTGGTGGAGGAGTAGGAGCTGCTGGTGGTGGAGGTG
65 TGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTG
25764157 CAGGAGGTGG
Statistics
Matches: 208, Mismatches: 7, Indels: 19
0.89 0.03 0.08
Matches are distributed among these distances:
110 1 0.00
111 82 0.39
114 2 0.01
118 1 0.00
120 119 0.57
121 3 0.01
ACGTcount: A:0.10, C:0.04, G:0.59, T:0.26
Consensus pattern (116 bp):
GGTGGTGGAGTGCTGGATGGTGTTGGTGGAGGTGCTGGAGGGGTGCAGGTGTTGGTGGTGGTGTT
GGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGAGGTGCTAGG
Found at i:25764038 original size:24 final size:24
Alignment explanation
Indices: 25763891--25764251 Score: 148
Period size: 24 Copynumber: 15.4 Consensus size: 24
25763881 GTGGTGGGGT
*
25763891 TGGTGGAGGAGTAGGAGCTGGTGG
1 TGGTGGAGGTGTAGGAGCTGGTGG
* * *
25763915 TGGTGGTGGTGGAGGTGCTAGG-GG
1 TGGTGGAGGTGTAGGAGCT-GGTGG
* *
25763939 TGGTGGAGGTGCT-GGAGGTGGTGT
1 TGGTGGAGGTG-TAGGAGCTGGTGG
** *
25763963 TGGTGGAGGTGCT-GGAGGGGGTGC
1 TGGTGGAGGTG-TAGGAGCTGGTGG
* ** * *
25763987 AGGTGTTGGTGGT-GGTGTTGG-GG
1 TGGTGGAGGT-GTAGGAGCTGGTGG
*
25764010 TTGGTGGAGGAGTAGGAGCTGGTGG
1 -TGGTGGAGGTGTAGGAGCTGGTGG
* * *
25764035 TGGTGGTGGTGGAGGTGCTAGG-GG
1 TGGTGGAGGTGTAGGAGCT-GGTGG
** * *
25764059 TGGTGGAGGTGGT-GTTGGTGGAGG
1 TGGTGGAGGT-GTAGGAGCTGGTGG
* * * *
25764083 TGTTGGA-GCG--GGTGCTGGTGT
1 TGGTGGAGGTGTAGGAGCTGGTGG
*
25764104 TGGTGGTGGTGT------TGG-GG
1 TGGTGGAGGTGTAGGAGCTGGTGG
* *
25764121 CTGGTGGAGGAGTAGGAGCTGCTGG
1 -TGGTGGAGGTGTAGGAGCTGGTGG
* * *
25764146 TGGTGGAGGTGCAGGAGGTGGTGT
1 TGGTGGAGGTGTAGGAGCTGGTGG
* *
25764170 TGGTGGTGGTGCT-GGGGCTGG-GG
1 TGGTGGAGGTG-TAGGAGCTGGTGG
* *
25764193 CTGGTGGAGGAGTAGGAGGTGGTGG
1 -TGGTGGAGGTGTAGGAGCTGGTGG
* * *
25764218 TGGTGGAAGTGTAGGAGGTGGTGT
1 TGGTGGAGGTGTAGGAGCTGGTGG
25764242 TGGTGGAGGT
1 TGGTGGAGGT
25764252 ACTGGTGGAG
Statistics
Matches: 250, Mismatches: 63, Indels: 48
0.69 0.17 0.13
Matches are distributed among these distances:
17 1 0.00
18 13 0.05
21 12 0.05
22 3 0.01
23 10 0.04
24 199 0.80
25 12 0.05
ACGTcount: A:0.10, C:0.04, G:0.59, T:0.26
Consensus pattern (24 bp):
TGGTGGAGGTGTAGGAGCTGGTGG
Found at i:25764113 original size:12 final size:12
Alignment explanation
Indices: 25764093--25764126 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
25764083 TGTTGGAGCG
25764093 GGTGCTGGTGTT
1 GGTGCTGGTGTT
*
25764105 GGTGGTGGTGTT
1 GGTGCTGGTGTT
*
25764117 GGGGCTGGTG
1 GGTGCTGGTG
25764127 GAGGAGTAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.06, G:0.59, T:0.35
Consensus pattern (12 bp):
GGTGCTGGTGTT
Found at i:25764114 original size:18 final size:18
Alignment explanation
Indices: 25763804--25764223 Score: 99
Period size: 18 Copynumber: 23.3 Consensus size: 18
25763794 GTGCAGGTAT
25763804 TGGTGGTGGTGGTGGTGG
1 TGGTGGTGGTGGTGGTGG
* * * ***
25763822 TGGAGATGCTGGAAATGG
1 TGGTGGTGGTGGTGGTGG
* * **
25763840 TGTTGGTGGAGGTGCAGG
1 TGGTGGTGGTGGTGGTGG
* * ** *
25763858 AGGAGGTGCAGGTGTTGG
1 TGGTGGTGGTGGTGGTGG
25763876 TGGTGGTGGTGG-GGTTGG
1 TGGTGGTGGTGGTGG-TGG
* * * *
25763894 TGGAGG-AGTAGGAGCTGG
1 TGGTGGTGGT-GGTGGTGG
*
25763912 TGGTGGTGGTGGTGGAGG
1 TGGTGGTGGTGGTGGTGG
* *
25763930 TGCTAGG-GGTGGTGGAGG
1 TGGT-GGTGGTGGTGGTGG
* * *
25763948 TGCTGGAGGTGGTGTTGG
1 TGGTGGTGGTGGTGGTGG
* * * *
25763966 TGGAGGTGCTGGAGGGGG
1 TGGTGGTGGTGGTGGTGG
** *
25763984 TGCAGGTGTTGGTGGTGG
1 TGGTGGTGGTGGTGGTGG
* *
25764002 TGTTGG-GGTTGGTGGAGG
1 TGGTGGTGG-TGGTGGTGG
* * *
25764020 -AGTAGGAGCTGGTGGTGG
1 TGGT-GGTGGTGGTGGTGG
* *
25764038 TGGTGGTGGAGGTGCTAGG
1 TGGTGGTGGTGGTGGT-GG
* *
25764057 -GGTGGTGGAGGTGGTGT
1 TGGTGGTGGTGGTGGTGG
* * *
25764074 TGGTGGAGGTGTTGGAGCG
1 TGGTGGTGGTGGTGGTG-G
* *
25764093 -GGTGCTGGTGTTGGTGG
1 TGGTGGTGGTGGTGGTGG
*
25764110 TGGTGTTGG-GGCTGGTGG
1 TGGTGGTGGTGG-TGGTGG
* * * * *
25764128 AGG-AGTAGGAGCTGCTGG
1 TGGTGGT-GGTGGTGGTGG
* ** *
25764146 TGGTGGAGGTGCAGGAGG
1 TGGTGGTGGTGGTGGTGG
* *
25764164 TGGTGTTGGTGGTGGTGC
1 TGGTGGTGGTGGTGGTGG
25764182 TGG-GGCTGG-GGCTGGTGG
1 TGGTGG-TGGTGG-TGGTGG
* * *
25764200 AGG-AGTAGGAGGTGGTGG
1 TGGTGGT-GGTGGTGGTGG
25764218 TGGTGG
1 TGGTGG
25764224 AAGTGTAGGA
Statistics
Matches: 282, Mismatches: 97, Indels: 45
0.67 0.23 0.11
Matches are distributed among these distances:
17 15 0.05
18 252 0.89
19 15 0.05
ACGTcount: A:0.10, C:0.05, G:0.59, T:0.26
Consensus pattern (18 bp):
TGGTGGTGGTGGTGGTGG
Found at i:25764166 original size:120 final size:116
Alignment explanation
Indices: 25763808--25764202 Score: 439
Period size: 120 Copynumber: 3.4 Consensus size: 116
25763798 AGGTATTGGT
* * ** *
25763808 GGTGGTGGTGGTGGTGGAGATGCTGGAAATGGTGTTGGTGGAGGTGCAGGAGGAGGTGCAGGTGT
1 GGTGGTGG-GGTGCTGGAGGTGCTGGAGGTGGTGTTGGTGGAGGTGCTGGAGG-GGTGCAGGTGT
* *
25763873 TGGTGGTGGTGGTGGGGTTGGTGGAGGAGTAGGAGCTGGTGGTGGTGGTGGTGGA
64 TGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGCTGCTGGTGGTGG-GGT-GA
* *
25763928 GGTGCTAGGGGTGGTGGAGGTGCTGGAGGTGGTGTTGGTGGAGGTGCTGGAGGGGGTGCAGGTGT
1 GGTGGT-GGGGTGCTGGAGGTGCTGGAGGTGGTGTTGGTGGAGGTGCTGGA-GGGGTGCAGGTGT
25763993 TGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGA---GCTGGTGGT--GGT--
64 TGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGCTGCTGGTGGTGGGGTGA
* * *
25764039 GGTGGTGGAGGTGCTAGG-GGTGGTGGAGGTGGTGTTGGTGGAGGTGTTGGAGCGGGTGCTGGTG
1 GGTGGTGG-GGTGCT-GGAGGTGCTGGAGGTGGTGTTGGTGGAGGTGCTGGAG-GGGTGCAGGTG
*
25764103 TTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGCTGCTGGTGGTGGAGGTGCA
63 TTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGCTGCTGGTGGTGG-GGTG-A
* * * * * *
25764159 GGAGGTGGTGTTGGTGGTGGTGCTGG-GGCTGGGGCTGGTGGAGG
1 GGTGGTGG-GGTGCTGGAGGTGCTGGAGG-TGGTGTTGGTGGAGG
25764203 AGTAGGAGGT
Statistics
Matches: 239, Mismatches: 20, Indels: 32
0.82 0.07 0.11
Matches are distributed among these distances:
110 3 0.01
111 85 0.36
112 2 0.01
114 12 0.05
117 11 0.05
119 4 0.02
120 118 0.49
121 4 0.02
ACGTcount: A:0.10, C:0.05, G:0.59, T:0.26
Consensus pattern (116 bp):
GGTGGTGGGGTGCTGGAGGTGCTGGAGGTGGTGTTGGTGGAGGTGCTGGAGGGGTGCAGGTGTTG
GTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGCTGCTGGTGGTGGGGTGA
Found at i:25764201 original size:111 final size:109
Alignment explanation
Indices: 25763844--25764186 Score: 375
Period size: 111 Copynumber: 3.0 Consensus size: 109
25763834 AAATGGTGTT
* *
25763844 GGTGGAGGTGCAGGAG-GAGGTGCAGGTGTTGGTGGTGGTGGTGGGGTTGGTGGAGGAGTAGGAG
1 GGTGGAGGTGCTGGAGCG-GGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAG
* * *
25763908 CTGGTGGTGGTGGTGGTGGAGGTGCTAGGGGTGGTGGAGGTGCTGGAGGTGGTGTT
65 C------TGGTGGTGGTGGAGGTGC-AGGGGTGGT---GGTGGTGGTGGTGGTG-G
*
25763964 GGTGGAGGTGCTGGAGGGGGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGC
1 GGTGGAGGTGCTGGAGCGGGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGC
* * * * *
25764029 TGGTGGTGGTGGTGGTGGAGGTGCTAGG-GGTGGTGGAGGTGGTGTT
66 TGGTGGTGGTGGAGGTGCAGG-GGT-GGTGGTGGTGGTGGTGGTG-G
* * *
25764075 GGTGGAGGTGTTGGAGCGGGTGCTGGTGTTGGTGGTGGTGTTGGGGCTGGTGGAGGAGTAGGAGC
1 GGTGGAGGTGCTGGAGCGGGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGC
* * *
25764140 TGCTGGTGGTGGAGGTGCAGGAGGTGGTGTTGGTGGTGGTGCTGG
66 TGGTGGTGGTGGAGGTGCAGG-GGTGGTGGTGGTGGTGGTGGTGG
25764185 GG
1 GG
25764187 CTGGGGCTGG
Statistics
Matches: 200, Mismatches: 19, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
110 4 0.02
111 111 0.56
113 3 0.01
114 18 0.09
115 2 0.01
120 61 0.31
121 1 0.00
ACGTcount: A:0.09, C:0.05, G:0.60, T:0.26
Consensus pattern (109 bp):
GGTGGAGGTGCTGGAGCGGGTGCAGGTGTTGGTGGTGGTGTTGGGGTTGGTGGAGGAGTAGGAGC
TGGTGGTGGTGGAGGTGCAGGGGTGGTGGTGGTGGTGGTGGTGG
Found at i:25764241 original size:72 final size:72
Alignment explanation
Indices: 25764063--25764256 Score: 255
Period size: 72 Copynumber: 2.7 Consensus size: 72
25764053 TAGGGGTGGT
* * * * * * *
25764063 GGAGGTGGTGTTGGTGGAGGTGTTGGAGCG-GGTGCTGGTGTTGGTGGTGGTGTTGGGGCTGGTG
1 GGAGGTGGTGGTGGTGGAGGTGTAGGAG-GTGGTGTTGGTGGTGGTGCTGGGGCTGGGGCTGGTG
25764127 GAGGAGTA
65 GAGGAGTA
* * *
25764135 GGAGCTGCTGGTGGTGGAGGTGCAGGAGGTGGTGTTGGTGGTGGTGCTGGGGCTGGGGCTGGTGG
1 GGAGGTGGTGGTGGTGGAGGTGTAGGAGGTGGTGTTGGTGGTGGTGCTGGGGCTGGGGCTGGTGG
25764200 AGGAGTA
66 AGGAGTA
* * *
25764207 GGAGGTGGTGGTGGTGGAAGTGTAGGAGGTGGTGTTGGTGGAGGTACTGG
1 GGAGGTGGTGGTGGTGGAGGTGTAGGAGGTGGTGTTGGTGGTGGTGCTGG
25764257 TGGAGGAGTA
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
71 1 0.01
72 104 0.99
ACGTcount: A:0.10, C:0.05, G:0.58, T:0.26
Consensus pattern (72 bp):
GGAGGTGGTGGTGGTGGAGGTGTAGGAGGTGGTGTTGGTGGTGGTGCTGGGGCTGGGGCTGGTGG
AGGAGTA
Found at i:25764249 original size:15 final size:15
Alignment explanation
Indices: 25764231--25764312 Score: 58
Period size: 15 Copynumber: 5.5 Consensus size: 15
25764221 TGGAAGTGTA
25764231 GGAGGTGGTGTTGGT
1 GGAGGTGGTGTTGGT
** * *
25764246 GGAGGTACTGGTGGA
1 GGAGGTGGTGTTGGT
* *
25764261 GGA-GTAGGAGTTAGT
1 GGAGGT-GGTGTTGGT
* * *
25764276 GGAGGTGGAGGTGCT
1 GGAGGTGGTGTTGGT
*
25764291 GGAGGTGGTGTTGGC
1 GGAGGTGGTGTTGGT
25764306 GGAGGTG
1 GGAGGTG
25764313 TAGGAGGAGG
Statistics
Matches: 48, Mismatches: 17, Indels: 4
0.70 0.25 0.06
Matches are distributed among these distances:
14 2 0.04
15 44 0.92
16 2 0.04
ACGTcount: A:0.15, C:0.04, G:0.57, T:0.24
Consensus pattern (15 bp):
GGAGGTGGTGTTGGT
Found at i:25764264 original size:30 final size:30
Alignment explanation
Indices: 25764230--25764311 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 30
25764220 GTGGAAGTGT
* *
25764230 AGGAGGTGGTGTTGGTGGAGGTACTGGTGG
1 AGGAGGTGGTGTTGGTGGAGGTACAGGTGC
* * **
25764260 AGGA-GTAGGAGTTAGTGGAGGTGGAGGTGC
1 AGGAGGT-GGTGTTGGTGGAGGTACAGGTGC
* *
25764290 TGGAGGTGGTGTTGGCGGAGGT
1 AGGAGGTGGTGTTGGTGGAGGT
25764312 GTAGGAGGAG
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
29 2 0.05
30 36 0.90
31 2 0.05
ACGTcount: A:0.16, C:0.04, G:0.56, T:0.24
Consensus pattern (30 bp):
AGGAGGTGGTGTTGGTGGAGGTACAGGTGC
Found at i:25764310 original size:60 final size:60
Alignment explanation
Indices: 25764193--25764311 Score: 177
Period size: 60 Copynumber: 2.0 Consensus size: 60
25764183 GGGGCTGGGG
* * *
25764193 CTGGTGGAGGAGTAGGAGGTGGTGGTGGTGGAAGTGTAGGAGGTGGTGTTGGTGGAGGTA
1 CTGGTGGAGGAGTAGGAGGTAGTGGAGGTGGAAGTGTAGGAGGTGGTGTTGGCGGAGGTA
* *
25764253 CTGGTGGAGGAGTAGGAGTTAGTGGAGGTGGAGGTGCT-GGAGGTGGTGTTGGCGGAGGT
1 CTGGTGGAGGAGTAGGAGGTAGTGGAGGTGGAAGTG-TAGGAGGTGGTGTTGGCGGAGGT
25764312 GTAGGAGGAG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
60 52 0.98
61 1 0.02
ACGTcount: A:0.16, C:0.03, G:0.56, T:0.24
Consensus pattern (60 bp):
CTGGTGGAGGAGTAGGAGGTAGTGGAGGTGGAAGTGTAGGAGGTGGTGTTGGCGGAGGTA
Found at i:25764312 original size:12 final size:12
Alignment explanation
Indices: 25764282--25764330 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
25764272 TAGTGGAGGT
*
25764282 GGAGGTGCTGGA
1 GGAGGTGTTGGA
* *
25764294 GGTGGTGTTGGC
1 GGAGGTGTTGGA
*
25764306 GGAGGTGTAGGA
1 GGAGGTGTTGGA
*
25764318 GGAGGTATTGGA
1 GGAGGTGTTGGA
25764330 G
1 G
25764331 CGGGTGCAAG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.16, C:0.04, G:0.57, T:0.22
Consensus pattern (12 bp):
GGAGGTGTTGGA
Found at i:25764318 original size:24 final size:24
Alignment explanation
Indices: 25764282--25764328 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
25764272 TAGTGGAGGT
* *
25764282 GGAGGTGCTGGAGGTGGTGTTGGC
1 GGAGGTGCTGGAGGAGGTATTGGC
25764306 GGAGGTG-TAGGAGGAGGTATTGG
1 GGAGGTGCT-GGAGGAGGTATTGG
25764329 AGCGGGTGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.15, C:0.04, G:0.57, T:0.23
Consensus pattern (24 bp):
GGAGGTGCTGGAGGAGGTATTGGC
Found at i:25764382 original size:30 final size:30
Alignment explanation
Indices: 25764306--25764383 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
25764296 TGGTGTTGGC
*
25764306 GGAGGTGTAGGAGGAGGTATTGGAGCGGGT
1 GGAGGTGTAGGAGGTGGTATTGGAGCGGGT
* * * * * *
25764336 GCAAGTGTTGGTGGTGGTATTGGGGCTGGT
1 GGAGGTGTAGGAGGTGGTATTGGAGCGGGT
*
25764366 GGAGGGGTAGGAGGTGGT
1 GGAGGTGTAGGAGGTGGT
25764384 GGAGGTGCTG
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.15, C:0.04, G:0.56, T:0.24
Consensus pattern (30 bp):
GGAGGTGTAGGAGGTGGTATTGGAGCGGGT
Found at i:25764387 original size:9 final size:9
Alignment explanation
Indices: 25764362--25764402 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
25764352 GTATTGGGGC
25764362 TGGTGGAGG
1 TGGTGGAGG
25764371 -GGTAGGAGG
1 TGGT-GGAGG
25764380 TGGTGGAGG
1 TGGTGGAGG
*
25764389 TGCTGGAGG
1 TGGTGGAGG
25764398 TGGTG
1 TGGTG
25764403 TTGGTGGAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 3 0.11
9 22 0.79
10 3 0.11
ACGTcount: A:0.12, C:0.02, G:0.63, T:0.22
Consensus pattern (9 bp):
TGGTGGAGG
Found at i:25764414 original size:12 final size:12
Alignment explanation
Indices: 25764380--25764418 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
25764370 GGGTAGGAGG
*
25764380 TGGTGGAGGTGC
1 TGGTGGAGGTGT
* *
25764392 TGGAGGTGGTGT
1 TGGTGGAGGTGT
25764404 TGGTGGAGGTGT
1 TGGTGGAGGTGT
25764416 TGG
1 TGG
25764419 AGCAGGTGCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.08, C:0.03, G:0.59, T:0.31
Consensus pattern (12 bp):
TGGTGGAGGTGT
Found at i:25764426 original size:24 final size:24
Alignment explanation
Indices: 25764380--25764450 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 24
25764370 GGGTAGGAGG
**
25764380 TGGTGGAGGTGCTGGAGGTGGTGT
1 TGGTGGAGGTGCTGGAGCAGGTGT
* *
25764404 TGGTGGAGGTGTTGGAGCAGGTGC
1 TGGTGGAGGTGCTGGAGCAGGTGT
* * * *
25764428 AGGAGGAAGTGCTGCAGCAGGTG
1 TGGTGGAGGTGCTGGAGCAGGTG
25764451 CAGGTGTTGG
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.15, C:0.08, G:0.54, T:0.23
Consensus pattern (24 bp):
TGGTGGAGGTGCTGGAGCAGGTGT
Found at i:25775935 original size:15 final size:14
Alignment explanation
Indices: 25775899--25775926 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25775889 ATTTTTAAAA
25775899 AAAAAATTAATTTT
1 AAAAAATTAATTTT
25775913 AAAAAATTAATTTT
1 AAAAAATTAATTTT
25775927 TTATAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAAAAATTAATTTT
Found at i:25775937 original size:11 final size:10
Alignment explanation
Indices: 25775921--25775969 Score: 55
Period size: 11 Copynumber: 4.6 Consensus size: 10
25775911 TTAAAAAATT
25775921 AATTTTTTATA
1 AATTTTTT-TA
25775932 AATTTTTCTTA
1 AATTTTT-TTA
25775943 TAA-TTTTTTA
1 -AATTTTTTTA
25775953 TAATTTTTTTA
1 -AATTTTTTTA
25775964 AATTTT
1 AATTTT
25775970 AAAAGAGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
10 12 0.34
11 20 0.57
12 3 0.09
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (10 bp):
AATTTTTTTA
Found at i:25775945 original size:13 final size:11
Alignment explanation
Indices: 25775923--25775969 Score: 62
Period size: 10 Copynumber: 4.3 Consensus size: 11
25775913 AAAAAATTAA
25775923 TTTTTTATAAAT
1 TTTTTTAT-AAT
25775935 TTTTCTTATAA-
1 TTTT-TTATAAT
25775946 TTTTTTATAAT
1 TTTTTTATAAT
25775957 TTTTTTA-AAT
1 TTTTTTATAAT
25775967 TTT
1 TTT
25775970 AAAAGAGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
10 12 0.36
11 11 0.33
12 6 0.18
13 4 0.12
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTTTATAAT
Found at i:25775948 original size:23 final size:21
Alignment explanation
Indices: 25775920--25775969 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 21
25775910 TTTAAAAAAT
25775920 TAATTTTTTATAAATTTTTCTTA
1 TAATTTTTTAT-AATTTTT-TTA
25775943 TAATTTTTTATAATTTTTTTA
1 TAATTTTTTATAATTTTTTTA
25775964 -AATTTT
1 TAATTTT
25775970 AAAAGAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.22
21 3 0.11
22 7 0.26
23 11 0.41
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (21 bp):
TAATTTTTTATAATTTTTTTA
Found at i:25779426 original size:6 final size:6
Alignment explanation
Indices: 25779415--25779443 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
25779405 TTATAGTGTA
25779415 TTATTC TTATTC TTATTC TTATTC TTATT
1 TTATTC TTATTC TTATTC TTATTC TTATT
25779444 ATTAATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (6 bp):
TTATTC
Found at i:25780862 original size:21 final size:21
Alignment explanation
Indices: 25780823--25780883 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
25780813 AGGCACTTTA
* *
25780823 TGTGTCGTATTTCAAGCACGTCG
1 TGTGTCGTA--TCAGGCACCTCG
25780846 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* *
25780867 TGTGTCATTTCAGGCAC
1 TGTGTCGTATCAGGCAC
25780884 TTATGTGCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 25 0.74
23 9 0.26
ACGTcount: A:0.16, C:0.25, G:0.26, T:0.33
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:25782175 original size:63 final size:63
Alignment explanation
Indices: 25782076--25782201 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
25782066 ATAAGCTTAA
*
25782076 TTACATTATCAATTCACGAATTAGAGTGATTATTCATGACATAGGTAAATTCACCTTTAGAAT
1 TTACATTATCAATTCACGAATTAGAGTGATTATTCATGACATAGGTAAATCCACCTTTAGAAT
25782139 TTACATTATCAATTCACGAATTAGAGTGATTATTCATGACATAGGTAAATCCACCTTTAGAAT
1 TTACATTATCAATTCACGAATTAGAGTGATTATTCATGACATAGGTAAATCCACCTTTAGAAT
25782202 AAGTAAATTT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36
Consensus pattern (63 bp):
TTACATTATCAATTCACGAATTAGAGTGATTATTCATGACATAGGTAAATCCACCTTTAGAAT
Found at i:25783008 original size:35 final size:35
Alignment explanation
Indices: 25782936--25783062 Score: 134
Period size: 35 Copynumber: 3.6 Consensus size: 35
25782926 AGTACATCAA
* * * * *
25782936 TAATCCAACCAAAACACAGCAAATTCTCATAAAAGC
1 TAATCCATCCAGAACACA-CCAATGCTCATAAGAGC
25782972 TAATCCATCCAGAACACACCAATGCTCATAAGAGC
1 TAATCCATCCAGAACACACCAATGCTCATAAGAGC
* *
25783007 TAATCCAT-CTGAAACACACTAATGCTCATAAGAG-
1 TAATCCATCCAG-AACACACCAATGCTCATAAGAGC
*
25783041 TTATCCATCC-GAAGCACACCAA
1 TAATCCATCCAGAA-CACACCAA
25783063 AACAGAGAAT
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
33 2 0.03
34 17 0.22
35 44 0.56
36 16 0.20
ACGTcount: A:0.43, C:0.29, G:0.09, T:0.19
Consensus pattern (35 bp):
TAATCCATCCAGAACACACCAATGCTCATAAGAGC
Found at i:25784877 original size:30 final size:30
Alignment explanation
Indices: 25784843--25784931 Score: 151
Period size: 30 Copynumber: 3.0 Consensus size: 30
25784833 TTTTTAAAGT
* *
25784843 CACCCATATCCCTACTAACTCCCATTAAAC
1 CACCCATATCCCCACTAACTCCCACTAAAC
25784873 CACCCATATCCCCACTAACTCCCACTAAAC
1 CACCCATATCCCCACTAACTCCCACTAAAC
*
25784903 CACTCATATCCCCACTAACTCCCACTAAA
1 CACCCATATCCCCACTAACTCCCACTAAA
25784932 TCTGATAGTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.34, C:0.46, G:0.00, T:0.20
Consensus pattern (30 bp):
CACCCATATCCCCACTAACTCCCACTAAAC
Found at i:25797362 original size:46 final size:46
Alignment explanation
Indices: 25797295--25797423 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
25797285 TGTAACCCGC
* * *
25797295 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
25797341 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
25797387 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
25797424 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:25797442 original size:46 final size:45
Alignment explanation
Indices: 25797300--25797442 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
25797290 CCCGCCCATA
* ** * *
25797300 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
* *** *
25797345 AAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
25797391 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
25797438 AGTGA
1 AGTGA
25797443 CATGTCACTT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
46 80 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:25800386 original size:57 final size:57
Alignment explanation
Indices: 25800274--25800384 Score: 179
Period size: 57 Copynumber: 2.0 Consensus size: 57
25800264 GATTATCCAA
* * * *
25800274 AGGCAAAGTTGAGCAATTAATCCACCGACGTATTGATTTTCGGAGGACCAATTTTAG
1 AGGCAAAATTCAGCAATTAATCCACCGACATATAGATTTTCGGAGGACCAATTTTAG
25800331 AGGCAAAATTCAGCAATTAATCCACCGACATATAGATTTT-GGAGGACCAATTTT
1 AGGCAAAATTCAGCAATTAATCCACCGACATATAGATTTTCGGAGGACCAATTTT
25800385 TAATTTATAC
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
56 14 0.28
57 36 0.72
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (57 bp):
AGGCAAAATTCAGCAATTAATCCACCGACATATAGATTTTCGGAGGACCAATTTTAG
Found at i:25802224 original size:25 final size:25
Alignment explanation
Indices: 25802196--25802251 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
25802186 GGAAGAAGAA
25802196 AATTATGATTTCTGCTTCAAGGTTC
1 AATTATGATTTCTGCTTCAAGGTTC
25802221 AATTATGATTTCTGCTTCAAGGTTC
1 AATTATGATTTCTGCTTCAAGGTTC
*
25802246 ACTTAT
1 AATTAT
25802252 ACAAAATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (25 bp):
AATTATGATTTCTGCTTCAAGGTTC
Found at i:25804056 original size:13 final size:13
Alignment explanation
Indices: 25804038--25804064 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25804028 TTTTATTACT
25804038 ACAGAGAGGAAGG
1 ACAGAGAGGAAGG
25804051 ACAGAGAGGAAGG
1 ACAGAGAGGAAGG
25804064 A
1 A
25804065 AATAGAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.44, T:0.00
Consensus pattern (13 bp):
ACAGAGAGGAAGG
Found at i:25807430 original size:43 final size:42
Alignment explanation
Indices: 25807379--25807598 Score: 143
Period size: 43 Copynumber: 5.2 Consensus size: 42
25807369 CTTGATTTCA
*
25807379 TCACCGGCAATCAGCCTGCTAGACCTTTAAGTCCGATATCATT
1 TCACCGGCAAT-AGCCTGCTAGACCTTTAAGCCCGATATCATT
* * * * *
25807422 TCACCGGCATTACGTCTGCTAG--GTTTGGAGCCTGATA--ATAT
1 TCACCGGCAATA-GCCTGCTAGACCTTT-AAGCCCGATATCAT-T
* *
25807463 TCACCAGCTTAA-AGCTTGCTAGACCTTTAAGCCCGATATCATT
1 TCACCGGC--AATAGCCTGCTAGACCTTTAAGCCCGATATCATT
* * **
25807506 TCACCGGCATTACGCCTGCTAG-GCTCGAAGCCCGATA--ATAT
1 TCACCGGCAATA-GCCTGCTAGACCTTTAAGCCCGATATCAT-T
* * * *
25807547 TCACCAGCTTAA-AGCTTGCTAGACCTTTAAGTCTGATATCATT
1 TCACCGGC--AATAGCCTGCTAGACCTTTAAGCCCGATATCATT
25807590 TCACCGGCA
1 TCACCGGCA
25807599 TTACGCATGC
Statistics
Matches: 132, Mismatches: 28, Indels: 36
0.67 0.14 0.18
Matches are distributed among these distances:
40 4 0.03
41 36 0.27
42 41 0.31
43 47 0.36
44 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (42 bp):
TCACCGGCAATAGCCTGCTAGACCTTTAAGCCCGATATCATT
Found at i:25807483 original size:41 final size:41
Alignment explanation
Indices: 25807438--25807568 Score: 124
Period size: 41 Copynumber: 3.1 Consensus size: 41
25807428 GCATTACGTC
* *
25807438 TGCTAGGTTTGGAGCCTGATAATATTCACCAGCTTAAAGCT
1 TGCTAGGTTTGAAGCCCGATAATATTCACCAGCTTAAAGCT
* * * *
25807479 TGCTAGACCTTT-AAGCCCGAT-ATCATTTCACCGGCATT-ACGCC
1 TGCTAG--GTTTGAAGCCCGATAAT-A-TTCACCAGC-TTAAAGCT
* *
25807522 TGCTAGGCTCGAAGCCCGATAATATTCACCAGCTTAAAGCT
1 TGCTAGGTTTGAAGCCCGATAATATTCACCAGCTTAAAGCT
25807563 TGCTAG
1 TGCTAG
25807569 ACCTTTAAGT
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
40 2 0.03
41 26 0.37
42 18 0.26
43 22 0.31
44 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (41 bp):
TGCTAGGTTTGAAGCCCGATAATATTCACCAGCTTAAAGCT
Found at i:25807489 original size:84 final size:83
Alignment explanation
Indices: 25807395--25807624 Score: 370
Period size: 84 Copynumber: 2.7 Consensus size: 83
25807385 GCAATCAGCC
* * * *
25807395 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGTCTGCTAGGTTTGGAGCCTGATAA
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACG-CTGCTAGGCTCGAAGCCCGATAA
25807460 TATTCACCAGCTTAAAGCT
65 TATTCACCAGCTTAAAGCT
*
25807479 TGCTAGACCTTTAAGCCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAGCCCGATAA
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACG-CTGCTAGGCTCGAAGCCCGATAA
25807544 TATTCACCAGCTTAAAGCT
65 TATTCACCAGCTTAAAGCT
* *
25807563 TGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCATGCTAGGCTCAAAGCCCGA
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGC-TGCTAGGCTCGAAGCCCGA
25807625 AATTCATCAC
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
83 1 0.01
84 135 0.99
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (83 bp):
TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCTGCTAGGCTCGAAGCCCGATAAT
ATTCACCAGCTTAAAGCT
Found at i:25809530 original size:14 final size:15
Alignment explanation
Indices: 25809501--25809530 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25809491 CAAAATTAAG
25809501 ACATGATACTTTCAC
1 ACATGATACTTTCAC
25809516 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
25809530 A
1 A
25809531 TATAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:25811531 original size:28 final size:27
Alignment explanation
Indices: 25811488--25811586 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
25811478 GAAATCAGTG
25811488 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
25811515 TTAATCTGGGCCATAGCCCCTTACAGTATCAA-A
1 TTAATCTGGGCC-TAG--CC---CA-TATCAATA
*
25811548 GTATAT-TGGGCCTAGCCCATATCAATA
1 TTA-ATCTGGGCCTAGCCCATATCAATA
*
25811575 TTAATCTTGGCC
1 TTAATCTGGGCC
25811587 GCAGCCCTAT
Statistics
Matches: 58, Mismatches: 4, Indels: 20
0.71 0.05 0.24
Matches are distributed among these distances:
26 8 0.14
27 14 0.24
28 10 0.17
30 4 0.07
32 3 0.05
33 11 0.19
34 8 0.14
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:25811613 original size:60 final size:59
Alignment explanation
Indices: 25811493--25811629 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
25811483 CAGTGTTAAC
* * *
25811493 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAAAGTATAT
1 TGGGCC-TAGCCCATATCAATATTAATCTGGGCCACAGCCCATTAAAG-ATCAAAGTATAT
* * *
25811554 TGGGCCTAGCCCATATCAATATTAATCTTGGCCGCAGCCCTATTATAAG-TC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATTAATCTGGGCCACAGCCC-ATTA-AAGATCAAAG-TATAT
*
25811614 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
25811630 TAACATAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 2 0.03
60 53 0.80
61 9 0.14
62 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATTAATCTGGGCCACAGCCCATTAAAGATCAAAGTATAT
Found at i:25814971 original size:34 final size:35
Alignment explanation
Indices: 25814919--25814984 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
25814909 CTAGCTACAA
*
25814919 TCTCAGTCTTCTAAAGTTTTCAGT-TTTCCCTACTG
1 TCTCAGTCTTCTAAAG-TTTCAGTATTACCCTACTG
*
25814954 TCTCAGT-TTCTACAGTTTCAGTATTACCCTA
1 TCTCAGTCTTCTAAAGTTTCAGTATTACCCTA
25814985 ACTACAGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 7 0.25
34 14 0.50
35 7 0.25
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.44
Consensus pattern (35 bp):
TCTCAGTCTTCTAAAGTTTCAGTATTACCCTACTG
Found at i:25816203 original size:60 final size:59
Alignment explanation
Indices: 25816083--25816219 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
25816073 CAGTGTCAAC
*
25816083 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT
* * *
25816144 TGGGCCTAGCCCATATCAGTATTAATCTGGGTCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
* *
25816204 TGGGCCTTGGCCATAT
1 TGGGCCTAGCCCATAT
25816220 TAACACAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 4 0.06
60 52 0.78
61 11 0.16
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:25818662 original size:2 final size:2
Alignment explanation
Indices: 25818655--25818682 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
25818645 TTATAAATAA
25818655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25818683 TCCTATCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25820736 original size:28 final size:27
Alignment explanation
Indices: 25820701--25820806 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
25820691 GAAATCAGTG
25820701 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
25820728 TTAATCTGGGCCATAGCCCCTTACAGTATCAA-A
1 TTAATCTGGGCC-TAG--CC---CA-TATCAATA
* *
25820761 GTATAT-TGGGCCTAGCCCATATCAGTA
1 TTA-ATCTGGGCCTAGCCCATATCAATA
*
25820788 TTAATCTGGGTCGTAGCCC
1 TTAATCTGGG-CCTAGCCC
25820807 TATTACAAGT
Statistics
Matches: 63, Mismatches: 5, Indels: 21
0.71 0.06 0.24
Matches are distributed among these distances:
26 7 0.11
27 13 0.21
28 17 0.27
30 4 0.06
32 3 0.05
33 11 0.17
34 8 0.13
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:25820829 original size:60 final size:59
Alignment explanation
Indices: 25820706--25820842 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
25820696 CAGTGTTAAC
* *
25820706 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAAAGTATAT
1 TGGGCC-TAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAG-ATCAAAGTACAT
* * * *
25820767 TGGGCCTAGCCCATATCAGTATTAATCTGGGTCGTAGCCCTATTACA-AGTC-GAGATACAT
1 TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCC-ATTACAGA-TCAAAG-TACAT
*
25820827 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
25820843 TAACACAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 3 0.05
60 52 0.79
61 11 0.17
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAGATCAAAGTACAT
Found at i:25824938 original size:25 final size:27
Alignment explanation
Indices: 25824895--25824945 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
25824885 GCGCGACTCT
*
25824895 TTTTTTTATATTAAAATATT-TTTTTG
1 TTTTTTTATAATAAAATATTATTTTTG
*
25824921 TTTTTTTA-AATAAGATATTATTTTT
1 TTTTTTTATAATAAAATATTATTTTT
25824946 TATTTTCGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (27 bp):
TTTTTTTATAATAAAATATTATTTTTG
Found at i:25825401 original size:26 final size:26
Alignment explanation
Indices: 25825372--25825461 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 26
25825362 CTTAATCCTA
*
25825372 AATTACTAATAAATTAATTTTAAAAT
1 AATTACTAACAAATTAATTTTAAAAT
* *
25825398 AATTACAAACACAA-AAATTTTAACATAATCCT
1 AATTACTAACA-AATTAATTTT-A-A-AA---T
25825430 AAATTACTAACAAATTAATTTTAAAAT
1 -AATTACTAACAAATTAATTTTAAAAT
25825457 AATTA
1 AATTA
25825462 TAAAAAACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
26 20 0.40
27 4 0.08
28 1 0.02
29 2 0.04
30 2 0.04
31 1 0.02
32 4 0.08
33 16 0.32
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (26 bp):
AATTACTAACAAATTAATTTTAAAAT
Found at i:25825435 original size:59 final size:60
Alignment explanation
Indices: 25825344--25825461 Score: 202
Period size: 59 Copynumber: 2.0 Consensus size: 60
25825334 ATACTAAATT
* * *
25825344 AAACACAACAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
25825404 AAACACAAAAATTT-TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
25825462 TAAAAAACAA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 42 0.76
60 13 0.24
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:25829358 original size:26 final size:26
Alignment explanation
Indices: 25829333--25829410 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 26
25829323 CCCTAATTTC
*
25829333 TCTTT-TTTCT-TTTCTTTTATTCTT
1 TCTTTCTTTCTATTTCGTTTATTCTT
* *
25829357 TCTTTCTTTCTATTTCGTTTCTTCTC
1 TCTTTCTTTCTATTTCGTTTATTCTT
*
25829383 TATTTCTTT-T-TCTT-GTTT-TTCTT
1 TCTTTCTTTCTAT-TTCGTTTATTCTT
25829406 TCTTT
1 TCTTT
25829411 TATTTATTCT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
23 8 0.18
24 10 0.22
25 8 0.18
26 19 0.42
ACGTcount: A:0.04, C:0.19, G:0.03, T:0.74
Consensus pattern (26 bp):
TCTTTCTTTCTATTTCGTTTATTCTT
Found at i:25829360 original size:17 final size:17
Alignment explanation
Indices: 25829338--25829370 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25829328 ATTTCTCTTT
25829338 TTTCTTTTCTTT-TATTC
1 TTTC-TTTCTTTCTATTC
25829355 TTTCTTTCTTTCTATT
1 TTTCTTTCTTTCTATT
25829371 TCGTTTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCTTTCTTTCTATTC
Found at i:25829381 original size:14 final size:14
Alignment explanation
Indices: 25829355--25829415 Score: 61
Period size: 15 Copynumber: 4.2 Consensus size: 14
25829345 TCTTTTATTC
25829355 TTTCTTTCTTTCTA
1 TTTCTTTCTTTCTA
25829369 TTTCGTTTCTTCTCTA
1 TTTC-TTTCTT-TCTA
* * *
25829385 TTTCTTTTTCTTGTT
1 TTTCTTTCT-TTCTA
25829400 TTTCTTTCTTT-TA
1 TTTCTTTCTTTCTA
25829413 TTT
1 TTT
25829416 ATTCTCTATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
13 4 0.10
14 6 0.15
15 20 0.51
16 9 0.23
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (14 bp):
TTTCTTTCTTTCTA
Found at i:25829580 original size:3 final size:3
Alignment explanation
Indices: 25829572--25829621 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
25829562 CAATTAATTG
25829572 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
25829619 ATA
1 ATA
25829622 TCTTTTACTT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 44 0.96
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:25829829 original size:20 final size:20
Alignment explanation
Indices: 25829806--25829844 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
25829796 ATAATTACTT
25829806 CTAATTAAAAATAAATTCAC
1 CTAATTAAAAATAAATTCAC
*
25829826 CTAATTAAAAATTAATTCA
1 CTAATTAAAAATAAATTCA
25829845 ACTCACAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (20 bp):
CTAATTAAAAATAAATTCAC
Found at i:25830219 original size:26 final size:26
Alignment explanation
Indices: 25830190--25830240 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
25830180 AAATTACAAG
*
25830190 TTATTAGCAATTAATATTAATTAATA
1 TTATTAGCAATTAATATTAACTAATA
* **
25830216 TTATTTGTTATTAATATTAACTAAT
1 TTATTAGCAATTAATATTAACTAAT
25830241 TAATAATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (26 bp):
TTATTAGCAATTAATATTAACTAATA
Found at i:25830459 original size:41 final size:41
Alignment explanation
Indices: 25830409--25830491 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
25830399 CAAAAAAAAG
*
25830409 AAAAGAGAGAAAAGAATGATAGGTGAACTAAGCGGGTTCAC
1 AAAAGAGAGAAAAGAATGATAGGTGAACTAAGCAGGTTCAC
*
25830450 AAAATAGAGAAAAGAATGATAGGTGAACTAAGCAGGTTCAC
1 AAAAGAGAGAAAAGAATGATAGGTGAACTAAGCAGGTTCAC
25830491 A
1 A
25830492 CTTAGGTCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.48, C:0.10, G:0.27, T:0.16
Consensus pattern (41 bp):
AAAAGAGAGAAAAGAATGATAGGTGAACTAAGCAGGTTCAC
Found at i:25831277 original size:21 final size:20
Alignment explanation
Indices: 25831253--25831292 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
25831243 ATAATTATTT
*
25831253 TAATTTTTATGTAAAAATAAG
1 TAATTTATAT-TAAAAATAAG
*
25831274 TAATTTATATTCAAAATAA
1 TAATTTATATTAAAAATAA
25831293 TGAAGATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (20 bp):
TAATTTATATTAAAAATAAG
Found at i:25838632 original size:29 final size:29
Alignment explanation
Indices: 25838600--25838658 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
25838590 TTATAAAAAT
*
25838600 TGGATCAAATTAAT-TTATTTATTATTAAA
1 TGGATCAAATTAATCTT-TATATTATTAAA
* *
25838629 TGGATTAATTTAATCTTTATATTATTAAA
1 TGGATCAAATTAATCTTTATATTATTAAA
25838658 T
1 T
25838659 AAAATTAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 24 0.92
30 2 0.08
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (29 bp):
TGGATCAAATTAATCTTTATATTATTAAA
Found at i:25838758 original size:16 final size:16
Alignment explanation
Indices: 25838739--25838771 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
25838729 TTATAGAACC
*
25838739 ATTTTTTTAAATAATA
1 ATTTTATTAAATAATA
25838755 ATTTTATTAAATAATA
1 ATTTTATTAAATAATA
25838771 A
1 A
25838772 ATAATATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTTTATTAAATAATA
Found at i:25838776 original size:23 final size:21
Alignment explanation
Indices: 25838746--25838792 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 21
25838736 ACCATTTTTT
*
25838746 TAAATAATAATTTTATTAAATAA
1 TAAATAAT-ATTTT-TTAAACAA
25838769 TAAATAATATTTTTTAAACAA
1 TAAATAATATTTTTTAAACAA
25838790 TAA
1 TAA
25838793 CTGTTAACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.43
22 5 0.22
23 8 0.35
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAATAATATTTTTTAAACAA
Found at i:25839216 original size:22 final size:22
Alignment explanation
Indices: 25839169--25839211 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
25839159 ATTACAATTT
* *
25839169 ATTTTTAATTAAATTTTTTAAA
1 ATTTTTAATCAAATTATTTAAA
25839191 ATTTTTAATCAAATCTATTTA
1 ATTTTTAATCAAAT-TATTTA
25839212 GATTTAATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTTTTAATCAAATTATTTAAA
Found at i:25840915 original size:22 final size:21
Alignment explanation
Indices: 25840890--25840930 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
25840880 AAACTATTTT
*
25840890 TAAAAATTATTTAAAAAAAGCA
1 TAAAAATTA-TAAAAAAAAGCA
25840912 TAAAAATTATAAAAAAAAG
1 TAAAAATTATAAAAAAAAG
25840931 TTTTTGATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (21 bp):
TAAAAATTATAAAAAAAAGCA
Found at i:25841287 original size:28 final size:28
Alignment explanation
Indices: 25841230--25841295 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 28
25841220 TTTTACCTCA
**
25841230 TATTTATATTTTAAGTTAATTTAATTAT
1 TATTTATATTTTAAGTTAATTTAACCAT
* *
25841258 TATTTATTTTTTAA-TTAAATTTTACCAT
1 TATTTATATTTTAAGTT-AATTTAACCAT
25841286 TAATTT-TATT
1 T-ATTTATATT
25841296 ATATATATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
27 2 0.06
28 25 0.81
29 4 0.13
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (28 bp):
TATTTATATTTTAAGTTAATTTAACCAT
Found at i:25847531 original size:8 final size:9
Alignment explanation
Indices: 25847509--25847533 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
25847499 ATTTTAAAAT
25847509 ATTTTTATG
1 ATTTTTATG
25847518 ATTTTTATG
1 ATTTTTATG
25847527 ATTTTTA
1 ATTTTTA
25847534 AATTTGATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (9 bp):
ATTTTTATG
Found at i:25851376 original size:19 final size:19
Alignment explanation
Indices: 25851352--25851390 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
25851342 GTATGTTGAC
25851352 GTTAAAAATCAGAATTTAA
1 GTTAAAAATCAGAATTTAA
25851371 GTTAAAAATCAGAATTTAA
1 GTTAAAAATCAGAATTTAA
25851390 G
1 G
25851391 CTTTCAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.05, G:0.13, T:0.31
Consensus pattern (19 bp):
GTTAAAAATCAGAATTTAA
Found at i:25852465 original size:12 final size:12
Alignment explanation
Indices: 25852433--25852465 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
25852423 ATGTTTAGTT
25852433 ATTTATTTTTTA
1 ATTTATTTTTTA
25852445 ATTTAATTTTTTA
1 ATTT-ATTTTTTA
25852458 ATTTATTT
1 ATTTATTT
25852466 AGTTTTTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
ATTTATTTTTTA
Done.