Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 95 of 345
Found at i:25854935 original size:9 final size:9
Alignment explanation
Indices: 25854921--25854999 Score: 79
Period size: 9 Copynumber: 8.8 Consensus size: 9
25854911 TCAATGTTAG
25854921 AATTTTTAT
1 AATTTTTAT
25854930 AATTTTTAT
1 AATTTTTAT
25854939 AATTTTTTAT
1 AA-TTTTTAT
25854949 AATTTTT-T
1 AATTTTTAT
***
25854957 AAAAATTAT
1 AATTTTTAT
* **
25854966 AAATTTTGG
1 AATTTTTAT
25854975 AATTTTTAT
1 AATTTTTAT
*
25854984 AATTTTTTT
1 AATTTTTAT
25854993 AATTTTT
1 AATTTTT
25855000 GTTGAGAGAG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
8 5 0.09
9 43 0.75
10 9 0.16
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (9 bp):
AATTTTTAT
Found at i:25854945 original size:10 final size:10
Alignment explanation
Indices: 25854923--25854957 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
25854913 AATGTTAGAA
25854923 TTTTTATAA-
1 TTTTTATAAT
25854932 TTTTTATAAT
1 TTTTTATAAT
25854942 TTTTTATAAT
1 TTTTTATAAT
25854952 TTTTTA
1 TTTTTA
25854958 AAAATTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:25857811 original size:30 final size:29
Alignment explanation
Indices: 25857772--25857829 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
25857762 AGATTAAATT
*
25857772 ATTATTTTTAAAATATTTAAAGAAATTAAG
1 ATTAATTTTAAAATATTTAAA-AAATTAAG
* *
25857802 ATTAATTTTAAATTTTTTAAAAAATTAA
1 ATTAATTTTAAAATATTTAAAAAATTAA
25857830 AATACAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
ATTAATTTTAAAATATTTAAAAAATTAAG
Found at i:25858805 original size:2 final size:2
Alignment explanation
Indices: 25858798--25858827 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
25858788 TTAAACCAAG
*
25858798 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25858828 TTTATACAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:25865167 original size:9 final size:11
Alignment explanation
Indices: 25865143--25865188 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
25865133 AAAAAAAAGA
25865143 AGAGAG-AGGG
1 AGAGAGAAGGG
25865153 AAGAGAGAAGGG
1 -AGAGAGAAGGG
25865165 AGAGAGAAGGG
1 AGAGAGAAGGG
*
25865176 AGAGAAAAGGG
1 AGAGAGAAGGG
25865187 AG
1 AG
25865189 GGGGAAAGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
11 29 0.88
12 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (11 bp):
AGAGAGAAGGG
Found at i:25865167 original size:18 final size:18
Alignment explanation
Indices: 25865140--25865178 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
25865130 GAAAAAAAAA
*
25865140 AGAAGAGAGAGGGAAGAG
1 AGAAGAGAGAGAGAAGAG
* *
25865158 AGAAGGGAGAGAGAAGGG
1 AGAAGAGAGAGAGAAGAG
25865176 AGA
1 AGA
25865179 GAAAAGGGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (18 bp):
AGAAGAGAGAGAGAAGAG
Found at i:25865315 original size:15 final size:14
Alignment explanation
Indices: 25865288--25865337 Score: 57
Period size: 15 Copynumber: 3.6 Consensus size: 14
25865278 GAAAAGGTAA
*
25865288 ATTTTTTTTTATAT
1 ATTTTTTTGTATAT
25865302 ATTTGTTTTGTATAT
1 ATTT-TTTTGTATAT
* *
25865317 ATATTTTTAT-TAT
1 ATTTTTTTGTATAT
25865330 ATTTTTTT
1 ATTTTTTT
25865338 TATTATGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 10 0.32
14 9 0.29
15 12 0.39
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (14 bp):
ATTTTTTTGTATAT
Found at i:25865338 original size:15 final size:13
Alignment explanation
Indices: 25865290--25865340 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
25865280 AAAGGTAAAT
25865290 TTTTTTTTATATA
1 TTTTTTTTATATA
25865303 TTTGTTTTGTATATA
1 TTT-TTTT-TATATA
*
25865318 -TATTTTTATTATA
1 TTTTTTTTA-TATA
25865331 TTTTTTTTAT
1 TTTTTTTTAT
25865341 TATGATGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
12 2 0.06
13 12 0.38
14 12 0.38
15 6 0.19
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (13 bp):
TTTTTTTTATATA
Found at i:25865415 original size:17 final size:17
Alignment explanation
Indices: 25865395--25865433 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
25865385 AAATAAAATA
*
25865395 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
25865412 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
25865429 AAAAT
1 AAAAT
25865434 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:25866984 original size:24 final size:24
Alignment explanation
Indices: 25866957--25867008 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
25866947 GTGGAATATC
*
25866957 ATTAAGCTCCAATGCATCAAGCCA
1 ATTAAGCTCCAATCCATCAAGCCA
25866981 ATTAAGCTCCAATCCATCAAGCCA
1 ATTAAGCTCCAATCCATCAAGCCA
25867005 ATTA
1 ATTA
25867009 TAATAAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.23
Consensus pattern (24 bp):
ATTAAGCTCCAATCCATCAAGCCA
Found at i:25867421 original size:28 final size:28
Alignment explanation
Indices: 25867390--25867454 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
25867380 GTTAGCTTTT
* *
25867390 ATATATGGTCGTCTTTA-CAGCCTGAATG
1 ATATATGGTCGGCTCTACCA-CCTGAATG
*
25867418 ATATATGTTCGGCTCTACCACCTGAATG
1 ATATATGGTCGGCTCTACCACCTGAATG
25867446 ATATATGGT
1 ATATATGGT
25867455 TGGTCCTGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 30 0.94
29 2 0.06
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (28 bp):
ATATATGGTCGGCTCTACCACCTGAATG
Found at i:25868289 original size:42 final size:42
Alignment explanation
Indices: 25868239--25868331 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
25868229 ATGTCTCAGG
*
25868239 CCGTGTAACAAT-TGAACTATGGA-CACACGGTCGTGTCTTCAC
1 CCGTGTAACAATCT-AACTAT-GATCACACGGTCGTGTCCTCAC
* ** *
25868281 CTGTGTAACTCTCTAAGTATGATCACACGGTCGTGTCCTCAC
1 CCGTGTAACAATCTAACTATGATCACACGGTCGTGTCCTCAC
25868323 CCGTGTAAC
1 CCGTGTAAC
25868332 TCTCTAAGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
41 2 0.05
42 40 0.93
43 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (42 bp):
CCGTGTAACAATCTAACTATGATCACACGGTCGTGTCCTCAC
Found at i:25868332 original size:42 final size:42
Alignment explanation
Indices: 25868262--25868341 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
25868252 GAACTATGGA
* *
25868262 CACACGGTCGTGTCTTCACCTGTGTAACTCTCTAAGTATGAT
1 CACACGGTCGTGTCCTCACCCGTGTAACTCTCTAAGTATGAT
25868304 CACACGGTCGTGTCCTCACCCGTGTAACTCTCTAAGTA
1 CACACGGTCGTGTCCTCACCCGTGTAACTCTCTAAGTA
25868342 CAATCACATG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (42 bp):
CACACGGTCGTGTCCTCACCCGTGTAACTCTCTAAGTATGAT
Found at i:25869321 original size:72 final size:72
Alignment explanation
Indices: 25869223--25869356 Score: 218
Period size: 72 Copynumber: 1.9 Consensus size: 72
25869213 CAATCCTATC
* *
25869223 AAACACACCAGATGCTCATAAGAGCTAGTCCATCTGAAACACACTAGATGCTT-ATAAGAGCTAA
1 AAACACACCAGATGCTCATAAGAGCTAATCCATCCGAAACACACTA-ATG-TTCATAAGAGCTAA
25869287 TTCATCCGA
64 TTCATCCGA
25869296 AAACACACCA-ATGCTCATAAGAGCTAATCCATCCGAAACACACTAATGTTCATAAGAGCTA
1 AAACACACCAGATGCTCATAAGAGCTAATCCATCCGAAACACACTAATGTTCATAAGAGCTA
25869357 GTCCAATCGA
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
70 2 0.03
71 13 0.22
72 33 0.57
73 10 0.17
ACGTcount: A:0.40, C:0.25, G:0.13, T:0.21
Consensus pattern (72 bp):
AAACACACCAGATGCTCATAAGAGCTAATCCATCCGAAACACACTAATGTTCATAAGAGCTAATT
CATCCGA
Found at i:25869349 original size:35 final size:36
Alignment explanation
Indices: 25869223--25869375 Score: 195
Period size: 36 Copynumber: 4.3 Consensus size: 36
25869213 CAATCCTATC
* *
25869223 AAACACACCAGATGCTCATAAGAGCTAGTCCATCTG
1 AAACACACCAGATGCTCATAAGAGCTAATCCATCCG
* * *
25869259 AAACACACTAGATGCTTATAAGAGCTAATTCATCCG
1 AAACACACCAGATGCTCATAAGAGCTAATCCATCCG
25869295 AAAACACACCA-ATGCTCATAAGAGCTAATCCATCCG
1 -AAACACACCAGATGCTCATAAGAGCTAATCCATCCG
* * *
25869331 AAACACACTA-ATGTTCATAAGAGCTAGTCCAAT-CG
1 AAACACACCAGATGCTCATAAGAGCTAATCC-ATCCG
25869366 AAACACACCA
1 AAACACACCA
25869376 AAACAGAGAG
Statistics
Matches: 103, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
35 38 0.37
36 56 0.54
37 9 0.09
ACGTcount: A:0.41, C:0.27, G:0.13, T:0.20
Consensus pattern (36 bp):
AAACACACCAGATGCTCATAAGAGCTAATCCATCCG
Found at i:25890835 original size:2 final size:2
Alignment explanation
Indices: 25890828--25890868 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
25890818 AAATAAAAAT
25890828 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25890869 GAACTACAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:25891029 original size:19 final size:19
Alignment explanation
Indices: 25890991--25891029 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
25890981 TTTATTTGTC
*
25890991 ATAATTATTTTAAAATATT
1 ATAATTATTTTAAAAGATT
* *
25891010 ATAATTCTTTTGAAAGATT
1 ATAATTATTTTAAAAGATT
25891029 A
1 A
25891030 AATATTGTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (19 bp):
ATAATTATTTTAAAAGATT
Found at i:25891053 original size:24 final size:25
Alignment explanation
Indices: 25891026--25891073 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
25891016 CTTTTGAAAG
*
25891026 ATTAAATATTGTA-AATTTTAATAC
1 ATTAAATATTATATAATTTTAATAC
*
25891050 ATTAATTATTATATAATTTTAATA
1 ATTAAATATTATATAATTTTAATA
25891074 TTTTAAAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (25 bp):
ATTAAATATTATATAATTTTAATAC
Found at i:25891431 original size:30 final size:30
Alignment explanation
Indices: 25891395--25891457 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
25891385 ACTTAACAAG
*
25891395 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAAAAACAAAATTAA
*
25891425 CAAATGCCTTTAAAATAAAAACAAAATTAA
1 CAAATGCCTCTAAAATAAAAACAAAATTAA
25891455 CAA
1 CAA
25891458 TAAAGTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.16, G:0.03, T:0.22
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAAAAACAAAATTAA
Found at i:25892438 original size:13 final size:12
Alignment explanation
Indices: 25892420--25892454 Score: 61
Period size: 13 Copynumber: 2.8 Consensus size: 12
25892410 AAACAAAAAC
25892420 AAAAAAAAGAAA
1 AAAAAAAAGAAA
25892432 AAGAAAAAAGAAA
1 AA-AAAAAAGAAA
25892445 AAAAAAAAGA
1 AAAAAAAAGA
25892455 CCATGAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:25892900 original size:5 final size:5
Alignment explanation
Indices: 25892890--25892921 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
25892880 CCTACTGTGA
25892890 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
25892922 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:25892915 original size:9 final size:9
Alignment explanation
Indices: 25892891--25892921 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
25892881 CTACTGTGAA
25892891 AAATAAAAT
1 AAATAAAAT
25892900 AAAATAAAAT
1 -AAATAAAAT
25892910 AAATAAAAT
1 AAATAAAAT
25892919 AAA
1 AAA
25892922 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:25899152 original size:25 final size:25
Alignment explanation
Indices: 25899115--25899162 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
25899105 TCTCTTAAAT
* *
25899115 TTTATTTACAAATAAAAATTATATA
1 TTTATATAAAAATAAAAATTATATA
* *
25899140 TTTATATAAAAATATATATTATA
1 TTTATATAAAAATAAAAATTATA
25899163 AATACCCGGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TTTATATAAAAATAAAAATTATATA
Found at i:25918734 original size:18 final size:18
Alignment explanation
Indices: 25918708--25918758 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
25918698 TCTTCTTTAA
*
25918708 CCTTTAACCTTTCATCTT
1 CCTTAAACCTTTCATCTT
*
25918726 CCTTAAACCGTTCATCTT
1 CCTTAAACCTTTCATCTT
*
25918744 CTTGTAAACCCTTTC
1 CCT-TAAA-CCTTTC
25918759 CTATTTATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 18 0.67
19 4 0.15
20 5 0.19
ACGTcount: A:0.20, C:0.33, G:0.04, T:0.43
Consensus pattern (18 bp):
CCTTAAACCTTTCATCTT
Found at i:25921328 original size:17 final size:17
Alignment explanation
Indices: 25921302--25921343 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
25921292 ATATTAAATT
*
25921302 TTTTTTATTAA-TAATAG
1 TTTTTAATTAATTAAT-G
*
25921319 TTTTTAATTAATTAATT
1 TTTTTAATTAATTAATG
25921336 TTTTTAAT
1 TTTTTAAT
25921344 AAAGATGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTTTAATTAATTAATG
Found at i:25926377 original size:4 final size:4
Alignment explanation
Indices: 25926368--25926477 Score: 80
Period size: 4 Copynumber: 27.5 Consensus size: 4
25926358 TTTAATTCTG
* * * * **
25926368 TTAT TTAT TTAT TCAT CTAC TTGT TTAT TTA- TTCC TTAT TTCAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT-AT TTAT
* * * * * *
25926416 TTCAT TCAT TTAT TTGT TTAT TTAC TCAT TTAT TTAT ATA- TTAT TCAT
1 TT-AT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
25926464 TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TT
25926478 TTGTTTCAAT
Statistics
Matches: 79, Mismatches: 23, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
3 4 0.05
4 68 0.86
5 7 0.09
ACGTcount: A:0.23, C:0.10, G:0.02, T:0.65
Consensus pattern (4 bp):
TTAT
Found at i:25926396 original size:20 final size:19
Alignment explanation
Indices: 25926371--25926477 Score: 90
Period size: 20 Copynumber: 5.4 Consensus size: 19
25926361 AATTCTGTTA
*
25926371 TTTATTTATTCATCTACTTG
1 TTTATTTATTCAT-TATTTG
* *
25926391 TTTATTTATTCCTTATTTCA
1 TTTATTTATTCATTATTT-G
25926411 TTTATTTCATTCATTTATTTG
1 TTTATTT-ATTCA-TTATTTG
* *
25926432 TTTATTTACTCATTTATTTA
1 TTTATTTATTCA-TTATTTG
* *
25926452 TATA-TTATTCATTTATTTA
1 TTTATTTATTCA-TTATTTG
25926471 TTTATTT
1 TTTATTT
25926478 TTGTTTCAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
19 21 0.29
20 35 0.48
21 11 0.15
22 6 0.08
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTATTTATTCATTATTTG
Found at i:25926791 original size:6 final size:6
Alignment explanation
Indices: 25926780--25926813 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
25926770 GGCATCTAGC
25926780 ATTTTT ATTTTTT ATTTTTT ATTTTT ATTTTT AT
1 ATTTTT A-TTTTT A-TTTTT ATTTTT ATTTTT AT
25926814 CACTTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 14 0.52
7 13 0.48
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
ATTTTT
Found at i:25926791 original size:7 final size:7
Alignment explanation
Indices: 25926781--25926811 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
25926771 GCATCTAGCA
25926781 TTTTTAT
1 TTTTTAT
25926788 TTTTTAT
1 TTTTTAT
25926795 TTTTTA-
1 TTTTTAT
25926801 TTTTTAT
1 TTTTTAT
25926808 TTTT
1 TTTT
25926812 ATCACTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTAT
Found at i:25926798 original size:13 final size:14
Alignment explanation
Indices: 25926781--25926811 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
25926771 GCATCTAGCA
25926781 TTTTTATTTTTTAT
1 TTTTTATTTTTTAT
25926795 TTTTTA-TTTTTAT
1 TTTTTATTTTTTAT
25926808 TTTT
1 TTTT
25926812 ATCACTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTTATTTTTTAT
Found at i:25936378 original size:22 final size:22
Alignment explanation
Indices: 25936350--25936393 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
25936340 AGCAAGAGAA
25936350 TGTAAAACCTATCTAGATGAGT
1 TGTAAAACCTATCTAGATGAGT
*
25936372 TGTAAAACCTATTTAGATGAGT
1 TGTAAAACCTATCTAGATGAGT
25936394 ATTTATGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (22 bp):
TGTAAAACCTATCTAGATGAGT
Found at i:25938914 original size:46 final size:46
Alignment explanation
Indices: 25938861--25939210 Score: 448
Period size: 46 Copynumber: 7.6 Consensus size: 46
25938851 ACCATAGTGC
* * ** *
25938861 CTTTCAACTATGGTCTTACTCATTTTTTGTCATGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTAT
*
25938907 CTTTCAACCATGGTCTTGTTCATTTCATGTCACGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTAT
* *
25938953 CTTTCAACCATGATCTTATTCATTTCATGTCACGCTGCCATGGTAT
1 CTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTAT
* *** *
25938999 CTTTCAACTATGGTCTTATTCATTTCCCATCATGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTAT
* *
25939045 CTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTTCCATGGTAT
1 CTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTAT
* * * *
25939091 CTTTCAACCATTGTCTTATCCTTTTCATGTCACGTTTCCATGGTAT
1 CTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTAT
* ** * * * *
25939137 TTTTCAACCATGGTCTTACACAATTCATATCATGTTACCATGGTAT
1 CTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTAT
**
25939183 CTTTCAACCATGGTCTTACACATTTCAT
1 CTTTCAACCATGGTCTTATTCATTTCAT
25939211 TTCAAAAAGT
Statistics
Matches: 268, Mismatches: 36, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 268 1.00
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (46 bp):
CTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTAT
Found at i:25939109 original size:138 final size:138
Alignment explanation
Indices: 25938861--25939210 Score: 504
Period size: 138 Copynumber: 2.5 Consensus size: 138
25938851 ACCATAGTGC
** * *
25938861 CTTTCAACTATGGTCTTACTCATTTTTTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTGT
1 CTTTCAACTATGGTCTTACTCATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAT
*
25938926 TCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGATCTTATTCATTTCATGTCACGCTGC
66 TCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGATCTTATCCATTTCATGTCACGCTGC
25938991 CATGGTAT
131 CATGGTAT
* **
25938999 CTTTCAACTATGGTCTTATTCATTTCCCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAT
1 CTTTCAACTATGGTCTTACTCATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAT
* * * * *
25939064 TCTTTTCATGTCACGTTTCCATGGTATCTTTCAACCATTG-TCTTATCCTTTTCATGTCACGTTT
66 TCATTTCATGTCACGTTGCCATGGTATCTTTCAACCA-TGATCTTATCCATTTCATGTCACGCTG
25939128 CCATGGTAT
130 CCATGGTAT
* * * * * *
25939137 TTTTCAACCATGGTCTTACACAATTCATATCATGTTACCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACTATGGTCTTACTCATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAT
*
25939202 ACATTTCAT
66 TCATTTCAT
25939211 TTCAAAAAGT
Statistics
Matches: 188, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
138 186 0.99
139 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (138 bp):
CTTTCAACTATGGTCTTACTCATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAT
TCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGATCTTATCCATTTCATGTCACGCTGC
CATGGTAT
Found at i:25942755 original size:25 final size:25
Alignment explanation
Indices: 25942723--25942770 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
25942713 GGATATGCTA
25942723 AATGTGCTAATAATCAGAGAGCACT
1 AATGTGCTAATAATCAGAGAGCACT
*
25942748 AATGTGCTAGTAATCAGAGAGCA
1 AATGTGCTAATAATCAGAGAGCA
25942771 TGCTGAGGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (25 bp):
AATGTGCTAATAATCAGAGAGCACT
Found at i:25944099 original size:46 final size:46
Alignment explanation
Indices: 25944049--25944353 Score: 430
Period size: 46 Copynumber: 6.6 Consensus size: 46
25944039 TGCCATAATG
* *
25944049 TCTTTCAACCATGGTCTTGTTCATTTCATGTCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTA
* *
25944095 TCTTTCAACCATGGTCTTGTTCATTTCATGTCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTA
*
25944141 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTA
** *
25944187 TCTTTCAATAATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTA
* * * * * *
25944233 TCTTTCAACCATGATTTTATTCTTTTCATATTACGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTA
** * *
25944279 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTA
**
25944325 TCTTTCAACCATGGTCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTATTCATTTCAT
25944354 TTCAGAAAAC
Statistics
Matches: 237, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 237 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTA
Found at i:25946208 original size:11 final size:11
Alignment explanation
Indices: 25946192--25946239 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
25946182 CTTTATATAC
25946192 TAATAAAATAA
1 TAATAAAATAA
*
25946203 TAATAAAATATCT
1 TAATAAAATA--A
* *
25946216 TATTAAAATAT
1 TAATAAAATAA
25946227 TAATAAAATAA
1 TAATAAAATAA
25946238 TA
1 TA
25946240 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:25947214 original size:44 final size:44
Alignment explanation
Indices: 25947151--25947780 Score: 442
Period size: 44 Copynumber: 14.1 Consensus size: 44
25947141 ATCATTATGG
*
25947151 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * *
25947195 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * *
25947239 CTAATCTTATTTCCCTAAAGTTGCAGTGGAGCAAATTGGAA-ATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-GAAGCTA
* * ** * * *
25947283 GTAAATCTTGTCTCTTTGAAGTTGCAGTAGAGCAGGTTAAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * *
25947328 TAAACCTTATCTCCATGGAGTTGCAGTGGAGCAGGTTGAAG-TCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT-A
* * * * * * *
25947372 CTAATCTTATCTTCCTGAAGTTACAGTGAAGCAGATTAAAACCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * * *
25947416 CAAGTCTCATATCTCTGAAGTTGCAGTGGAGCAAATTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * *
25947460 GCAAGTCTCATTTCCCTGAAGTTGCAGTGG-GACAGGTTGAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGCTA
* ** * *
25947505 CATAGTGAATCTGATCTCCCTGAAGTAACAGTGGAGCAGATTAAAGATA
1 C--A---AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * *
25947554 GCAAATCTCATCTCTCTGAAATTGCAGTAGAGCAGATTAAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * ** * *
25947599 TAAA-CTTTATCTCCCTAAAGCTATAATGGAGCAGATTGAAGTTA
1 CAAATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * *
25947643 CAAGTCTTATCTCCCTAAATTTGCAGTGGAGCAGATTAAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
** * * **
25947687 GTGAATCTTATCTCCCCGAAGTTGTAGTGGAATAGATTGAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * * * *
25947732 CTAATCTTATCT-CATTAAGGATGTAGTGGAGTAGATTGAAGCGA
1 CAAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGCTA
25947776 CAAAT
1 CAAAT
25947781 TCTACACCTC
Statistics
Matches: 455, Mismatches: 113, Indels: 36
0.75 0.19 0.06
Matches are distributed among these distances:
43 5 0.01
44 277 0.61
45 137 0.30
46 1 0.00
48 1 0.00
49 32 0.07
50 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
Found at i:25947323 original size:89 final size:88
Alignment explanation
Indices: 25947152--25947744 Score: 379
Period size: 89 Copynumber: 6.6 Consensus size: 88
25947142 TCATTATGGC
* *
25947152 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACACAAATCTTATCTCCCTGAAGTT
*
25947217 GCAGTGGAGCAAATTAAAGCCACT
66 GCAGTAGAGCAAATTAAAGCCA-T
* * * * * **
25947241 -AATCTTATTTCCCTAAAGTTGCAGTGGAGCAAATTGGAA-ATAGTAAATCTTGTCTCTTTGAAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATT-GAAGACA-CAAATCTTATCTCCCTGAAG
** *
25947304 TTGCAGTAGAGCAGGTTAAAGCTAT
64 TTGCAGTAGAGCAAATTAAAGCCAT
* * * ** * * *
25947329 AAACCTTATCTCCATGGAGTTGCAGTGGAGCAGGTTGAAGTCACTAATCTTATCTTCCTGAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACACAAATCTTATCTCCCTGAAGTT
* * * *
25947394 ACAGT-GAAGCAGATTAAAACCAC
66 GCAGTAG-AGCAAATTAAAGCCAT
* * * * * * * *
25947417 AAGTCTCATATCTCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCAAGTCTCATTTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACA-CAAATCTTATCTCCCTGAAGT
* ** *
25947482 TGCAGT-GGGACAGGTTGAAGCTACAT
65 TGCAGTAGAG-CAAATTAAAGC--CAT
* ** * * * * *
25947508 AGTGAATCTGATCTCCCTGAAGTAACAGTGGAGCAGATTAAAGATAGCAAATCTCATCTCTCTGA
1 A---AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACA-CAAATCTTATCTCCCTGA
* * *
25947573 AATTGCAGTAGAGCAGATTAAAGCTAT
62 AGTTGCAGTAGAGCAAATTAAAGCCAT
* * ** * * ** * * *
25947600 AAA-CTTTATCTCCCTAAAGCTATAATGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTAAATT
1 AAATC-TTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACACAAATCTTATCTCCCTGAAGT
* * **
25947664 TGCAGTGGAGCAGATTAAAGATAGT
65 TGCAGTAGAGCAAATTAAAGCCA-T
* * * ** * *
25947689 GAATCTTATCTCCCCGAAGTTGTAGTGGAATAGATTGAAG-CTACTAATCTTATCTC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGAC-ACAAATCTTATCTC
25947745 ATTAAGGATG
Statistics
Matches: 390, Mismatches: 97, Indels: 34
0.75 0.19 0.07
Matches are distributed among these distances:
87 1 0.00
88 140 0.36
89 173 0.44
90 1 0.00
91 3 0.01
92 3 0.01
94 67 0.17
95 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (88 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACACAAATCTTATCTCCCTGAAGTT
GCAGTAGAGCAAATTAAAGCCAT
Found at i:25947482 original size:177 final size:177
Alignment explanation
Indices: 25947156--25947504 Score: 443
Period size: 177 Copynumber: 2.0 Consensus size: 177
25947146 TATGGCAAAT
* *
25947156 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAAGTTACAG
* * * * *
25947221 TGGAGCAAATTAAAGCCACTAATCTTATTTCCCTAAAGTTGCAGTGGAGCAAATTGGAAATAGTA
66 TGAAGCAAATTAAAACCACTAATCTCATATCCCTAAAGTTGCAGTGGAGCAAATTGGAAATAGCA
** **
25947286 AATCTTGTCTCTTTGAAGTTGCAGT-AGAGCAGGTTAAAGCTATAAAC
131 AATCTCATCTCCCTGAAGTTGCAGTGAGA-CAGGTTAAAGCTATAAAC
* * * * *
25947333 CTTATCTCCATGGAGTTGCAGTGGAGCAGGTTGAAGTCACTAATCTTATCTTCCTGAAGTTACAG
1 CTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAAGTTACAG
* * *
25947398 TGAAGCAGATTAAAACCAC-AAGTCTCATATCTCTGAAGTTGCAGTGGAGCAAATT-GAAGATAG
66 TGAAGCAAATTAAAACCACTAA-TCTCATATCCCTAAAGTTGCAGTGGAGCAAATTGGAA-ATAG
* * * *
25947461 CAAGTCTCATTTCCCTGAAGTTGCAGTGGGACAGGTTGAAGCTA
129 CAAATCTCATCTCCCTGAAGTTGCAGTGAGACAGGTTAAAGCTA
25947505 CATAGTGAAT
Statistics
Matches: 146, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
176 5 0.03
177 139 0.95
178 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (177 bp):
CTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAAGTTACAG
TGAAGCAAATTAAAACCACTAATCTCATATCCCTAAAGTTGCAGTGGAGCAAATTGGAAATAGCA
AATCTCATCTCCCTGAAGTTGCAGTGAGACAGGTTAAAGCTATAAAC
Found at i:25947483 original size:133 final size:131
Alignment explanation
Indices: 25947153--25947744 Score: 458
Period size: 133 Copynumber: 4.4 Consensus size: 131
25947143 CATTATGGCA
* * * *
25947153 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAAGTTG
1 AATCTCATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTG
** * * * * * *
25947218 CAGTGGAGCAAATTAAAGCCACTAATCTTAT-TTCCCTAAAGTTGCAGTGGAGCAAATTGGAAAT
66 CAGTGGAGCAGGTTGAAGTCACTAATCTTATCTT-CCTGAAGTTACAGTGGAGCAGATT--AAAG
25947282 AGTA-
128 A-TAC
** * * * * * * *
25947286 AATCTTGTCTCTTTGAAGTTGCAGTAGAGCAGGTTAAAGCTATAAACCTTATCTCCATGGAGTTG
1 AATCTCATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTG
* *
25947351 CAGTGGAGCAGGTTGAAGTCACTAATCTTATCTTCCTGAAGTTACAGTGAAGCAGATTAAA-ACC
66 CAGTGGAGCAGGTTGAAGTCACTAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTAAAGA-T
25947415 AC
130 AC
* * * * * * *
25947417 AAGTCTCATATCTCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCAAGTCTCATTTCCCTGAAGT
1 AA-TCTCATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTA-CAAATCTTATCTCCCTGAAGT
* * * *
25947482 TGCAGTGG-GACAGGTTGAAGCTACATAGTGAATCTGATCTCCCTGAAGTAACAGTGGAGCAGAT
64 TGCAGTGGAG-CAGGTTGAAG-T-C--ACT-AATCTTATCTTCCTGAAGTTACAGTGGAGCAGAT
25947546 TAAAGATAGC
123 TAAAGATA-C
* * * * *
25947556 AAATCTCATCTCTCTGAAATTGCAGTAGAGCAGATTAAAGCTATAAA-CTTTATCTCCCTAAAGC
1 -AATCTCATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC-TTATCTCCCTGAAGT
** * * * * * * *
25947620 TATAATGGAGCAGATTGAAGTTAC-AAGTCTTATCTCCCTAAATTTGCAGTGGAGCAGATTAAAG
64 TGCAGTGGAGCAGGTTGAAGTCACTAA-TCTTATCTTCCTGAAGTTACAGTGGAGCAGATTAAAG
*
25947684 ATAGTG
128 ATA--C
* * * * * ** *
25947690 AATCTTATCTCCCCGAAGTTGTAGTGGAATAGATTGAAGCTACTAATCTTATCTC
1 AATCTCATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTC
25947745 ATTAAGGATG
Statistics
Matches: 362, Mismatches: 79, Indels: 36
0.76 0.17 0.08
Matches are distributed among these distances:
130 2 0.01
131 5 0.01
132 34 0.09
133 210 0.58
134 5 0.01
135 1 0.00
137 4 0.01
138 62 0.17
139 37 0.10
140 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (131 bp):
AATCTCATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAGGTTGAAGTCACTAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTAAAGATA
C
Found at i:25947762 original size:133 final size:133
Alignment explanation
Indices: 25947533--25947772 Score: 293
Period size: 133 Copynumber: 1.8 Consensus size: 133
25947523 CCTGAAGTAA
* * *
25947533 CAGTGGAGCAGATTAAAGATAGCAAATCTCATCTCTCTGAAATTGCAGTAGAGCAGATTAAAGCT
1 CAGTGGAGCAGATTAAAGATAGCAAATCTCATCTCCCCGAAATTGCAGTAGAACAGATTAAAGCT
* *
25947598 ATAAACTTTATCTCCCTAAAGCTATAATGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTAAAT
66 ATAAACTTTATCTCACTAAAGATATAATGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTAAAT
25947663 TTG
131 TTG
** * * * * * *
25947666 CAGTGGAGCAGATTAAAGATAGTGAATCTTATCTCCCCGAAGTTGTAGTGGAATAGATTGAAGCT
1 CAGTGGAGCAGATTAAAGATAGCAAATCTCATCTCCCCGAAATTGCAGTAGAACAGATTAAAGCT
* * * * * *
25947731 ACTAATC-TTATCTCATTAAGGATGTAGTGGAGTAGATTGAAG
66 A-TAAACTTTATCTCACTAAAGATATAATGGAGCAGATTGAAG
25947773 CGACAAATTC
Statistics
Matches: 87, Mismatches: 19, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
133 83 0.95
134 4 0.05
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (133 bp):
CAGTGGAGCAGATTAAAGATAGCAAATCTCATCTCCCCGAAATTGCAGTAGAACAGATTAAAGCT
ATAAACTTTATCTCACTAAAGATATAATGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTAAAT
TTG
Found at i:25947801 original size:44 final size:43
Alignment explanation
Indices: 25947704--25947804 Score: 105
Period size: 44 Copynumber: 2.3 Consensus size: 43
25947694 TTATCTCCCC
* * * *
25947704 GAAGTTGTAGTGGAATAGATTGAAGCTACTAATCTTATCTCAT
1 GAAGTTGTAGTGGAATAGATTGAAGCGACAAATCTCACCTCAT
* * *
25947747 TAAGGATGTAGTGGAGTAGATTGAAGCGACAAATTCTACACCTC-T
1 GAA-GTTGTAGTGGAATAGATTGAAGCGACAAA-TCT-CACCTCAT
25947792 GAAGTTGTAGTGG
1 GAAGTTGTAGTGG
25947805 GTTAGAAAGA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
43 2 0.04
44 34 0.74
45 6 0.13
46 4 0.09
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.31
Consensus pattern (43 bp):
GAAGTTGTAGTGGAATAGATTGAAGCGACAAATCTCACCTCAT
Found at i:25949902 original size:24 final size:23
Alignment explanation
Indices: 25949865--25949910 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
25949855 GGCATCTAGA
*
25949865 ATTTTTATTATTTATTTATTTTT
1 ATTTTTATCATTTATTTATTTTT
25949888 ATTTTTATCACTTTATTTATTTT
1 ATTTTTATCA-TTTATTTATTTT
25949911 ATACCATGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (23 bp):
ATTTTTATCATTTATTTATTTTT
Found at i:25951865 original size:2 final size:2
Alignment explanation
Indices: 25951858--25951937 Score: 151
Period size: 2 Copynumber: 40.0 Consensus size: 2
25951848 TGAATAAGAA
*
25951858 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25951900 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25951938 CATTAGTGCA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 76 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25952388 original size:2 final size:2
Alignment explanation
Indices: 25952377--25952408 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
25952367 CAAATTTGTT
25952377 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25952409 GATTCCTACT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25955673 original size:2 final size:2
Alignment explanation
Indices: 25955666--25955693 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
25955656 CTCCTGTTGG
25955666 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25955694 TAAAATTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25956300 original size:7 final size:7
Alignment explanation
Indices: 25956288--25956317 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
25956278 ATCATTCCAA
25956288 TCGAATC
1 TCGAATC
25956295 TCGAATC
1 TCGAATC
25956302 TCGAATC
1 TCGAATC
25956309 TCGAATC
1 TCGAATC
25956316 TC
1 TC
25956318 TAACCTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (7 bp):
TCGAATC
Found at i:25956380 original size:6 final size:6
Alignment explanation
Indices: 25956363--25956404 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
25956353 CCTAAAATAA
* *
25956363 AGTTTAG AGTTTG AGTTTG AGTTTG AGTTCG AGTTCG AGTTT
1 AGTTT-G AGTTTG AGTTTG AGTTTG AGTTTG AGTTTG AGTTT
25956405 AAGATTCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
6 28 0.85
7 5 0.15
ACGTcount: A:0.19, C:0.05, G:0.31, T:0.45
Consensus pattern (6 bp):
AGTTTG
Found at i:25957236 original size:17 final size:16
Alignment explanation
Indices: 25957181--25957243 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 16
25957171 ATTTTAATAT
25957181 AATTTCTATGAAGTTCTAA
1 AATTTCTAT-AA-TT-TAA
* *
25957200 AATTTATATCTATTTAA
1 AATTTCTAT-AATTTAA
25957217 AATTTCTATAATTTATA
1 AATTTCTATAATTTA-A
*
25957234 AATTTTTATA
1 AATTTCTATA
25957244 GTATTCATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
16 5 0.14
17 21 0.57
18 2 0.05
19 9 0.24
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (16 bp):
AATTTCTATAATTTAA
Found at i:25957254 original size:21 final size:22
Alignment explanation
Indices: 25957230--25957275 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
25957220 TTCTATAATT
*
25957230 TATAAAT-TTTTATAGTATTCA
1 TATAAATATTTTATAATATTCA
*
25957251 TAT-AATATTTTATAATTTTCA
1 TATAAATATTTTATAATATTCA
25957272 TATA
1 TATA
25957276 TATTAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.54
Consensus pattern (22 bp):
TATAAATATTTTATAATATTCA
Found at i:25959815 original size:39 final size:39
Alignment explanation
Indices: 25959753--25959892 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
25959743 ATCGTGATTT
* * * *
25959753 GAAGCTCGAAGTCTAGCTGAAGCACATAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
* * *
25959792 GAAGCCCGAAGGCTAACTAAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
*
25959831 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
*
25959870 GAAGCCCAAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
25959893 TTATCAGAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.40, C:0.23, G:0.24, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
Found at i:25960124 original size:29 final size:30
Alignment explanation
Indices: 25960077--25960144 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
25960067 TGGCCCAAGA
* *
25960077 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
25960107 GTAAATATCAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
25960137 GAAAATAT
1 GTAAATAT
25960145 TTTAAGGGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 17 0.50
30 17 0.50
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:25962542 original size:46 final size:46
Alignment explanation
Indices: 25962490--25962767 Score: 432
Period size: 46 Copynumber: 6.0 Consensus size: 46
25962480 AGTGTGCTCT
*
25962490 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
25962536 CTGATATGAAATGTGTAAGACCATGGTTGAAAGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTT----GAAAGATACCATGGCAAC
25962586 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
25962632 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
25962678 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
25962724 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
25962768 TCATGTCAAA
Statistics
Matches: 220, Mismatches: 7, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
45 1 0.00
46 173 0.79
50 46 0.21
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:25962561 original size:30 final size:30
Alignment explanation
Indices: 25962525--25962611 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 30
25962515 GTTGAAAGAT
25962525 ACCATGGCAGCCTGATATGAAATGTGTAAG
1 ACCATGGCAGCCTGATATGAAATGTGTAAG
* * *
25962555 ACCAT-G--G-TTGA-AAGAAA---G--AT
1 ACCATGGCAGCCTGATATGAAATGTGTAAG
25962575 ACCATGGCAGCCTGATATGAAATGTGTAAG
1 ACCATGGCAGCCTGATATGAAATGTGTAAG
25962605 ACCATGG
1 ACCATGG
25962612 TTGAAAGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 20
0.61 0.09 0.30
Matches are distributed among these distances:
20 6 0.15
21 1 0.02
22 1 0.02
23 1 0.02
24 3 0.07
25 10 0.24
26 3 0.07
27 1 0.02
28 1 0.02
29 1 0.02
30 13 0.32
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (30 bp):
ACCATGGCAGCCTGATATGAAATGTGTAAG
Found at i:25966517 original size:46 final size:46
Alignment explanation
Indices: 25966465--25966590 Score: 173
Period size: 46 Copynumber: 2.7 Consensus size: 46
25966455 AGTGTGCTCT
*
25966465 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
* *
25966511 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
* * * *
25966557 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
25966591 CACTATGGCA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 70 0.99
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
Found at i:25966599 original size:46 final size:46
Alignment explanation
Indices: 25966470--25966605 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
25966460 GCTCTCTGAT
* * * *
25966470 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAGCCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
25966516 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
25966562 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
25966606 TCAAAGATAA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.01
46 77 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:25967793 original size:229 final size:229
Alignment explanation
Indices: 25967392--25967845 Score: 872
Period size: 229 Copynumber: 2.0 Consensus size: 229
25967382 TGAAACTCAT
25967392 ATGAGTTAACGAAAGCTCGTAAGAGCTAAACGAAAAGCAAACACGAGAATTCGCAACAAATGCTG
1 ATGAGTTAACGAAAGCTCGTAAGAGCTAAACGAAAAGCAAACACGAGAATTCGCAACAAATGCTG
25967457 AATCTCGATTTACTTGGGTAATTTACCGTCAATTCATCTTTTTCACTGAACGATTGTACTCATTT
66 AATCTCGATTTACTTGGGTAATTTACCGTCAATTCATCTTTTTCACTGAACGATTGTACTCATTT
* *
25967522 CCTGTGTTCCGTTCCTCCGAAATACTCAGTTCGATTTCATAACTTTTGTACATAATTTACTTATT
131 CCTGCGTTCCGTTCCTCCAAAATACTCAGTTCGATTTCATAACTTTTGTACATAATTTACTTATT
25967587 TTCAACAATTAACATACATAAATATTAATCCCTG
196 TTCAACAATTAACATACATAAATATTAATCCCTG
* *
25967621 ATGAGTTAACGGAAGCTCGTAAGAGCTAAACGAAAAGCAAACACGAGAATTCGTAACAAATGCTG
1 ATGAGTTAACGAAAGCTCGTAAGAGCTAAACGAAAAGCAAACACGAGAATTCGCAACAAATGCTG
25967686 AATCTCGATTTACTTGGGTAATTTACCGTCAATTCATCTTTTTCACTGAACGATTGTACTCATTT
66 AATCTCGATTTACTTGGGTAATTTACCGTCAATTCATCTTTTTCACTGAACGATTGTACTCATTT
25967751 CCTGCGTTCCGTTCCTCCAAAATACTCAGTTCGATTTCATAACTTTTGTACATAATTTACTTATT
131 CCTGCGTTCCGTTCCTCCAAAATACTCAGTTCGATTTCATAACTTTTGTACATAATTTACTTATT
25967816 TTCAACAATTAACATACATAAATATTAATC
196 TTCAACAATTAACATACATAAATATTAATC
25967846 ACCATTCATA
Statistics
Matches: 221, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
229 221 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (229 bp):
ATGAGTTAACGAAAGCTCGTAAGAGCTAAACGAAAAGCAAACACGAGAATTCGCAACAAATGCTG
AATCTCGATTTACTTGGGTAATTTACCGTCAATTCATCTTTTTCACTGAACGATTGTACTCATTT
CCTGCGTTCCGTTCCTCCAAAATACTCAGTTCGATTTCATAACTTTTGTACATAATTTACTTATT
TTCAACAATTAACATACATAAATATTAATCCCTG
Found at i:25972082 original size:24 final size:23
Alignment explanation
Indices: 25972047--25972091 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
25972037 TTTTCATTAT
25972047 ATTATTAAATTTATATTAAAAATA
1 ATTATTAAATTTA-ATTAAAAATA
*
25972071 ATTA-TAATATTTAATTTAAAA
1 ATTATTAA-ATTTAATTAAAAA
25972092 CTATTACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
ATTATTAAATTTAATTAAAAATA
Found at i:25972097 original size:23 final size:23
Alignment explanation
Indices: 25972045--25972102 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
25972035 ACTTTTCATT
25972045 ATATTATTAAATTTATATTAAAA
1 ATATTATTAAATTTATATTAAAA
25972068 ATAATTA-TAATATTTA-ATTTAAAA
1 AT-ATTATTAA-ATTTATA-TTAAAA
* *
25972092 CTATTACTAAA
1 ATATTATTAAA
25972103 AAAATTAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
23 11 0.37
24 19 0.63
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (23 bp):
ATATTATTAAATTTATATTAAAA
Found at i:25972161 original size:15 final size:14
Alignment explanation
Indices: 25972144--25972181 Score: 53
Period size: 12 Copynumber: 2.8 Consensus size: 14
25972134 TATACATTTA
25972144 AAAAAATTATAATT
1 AAAAAATTATAATT
25972158 --AAAATTATTAATT
1 AAAAAATTA-TAATT
25972171 AAAAAATTATA
1 AAAAAATTATA
25972182 CTAATTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
12 7 0.33
13 5 0.24
14 2 0.10
15 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAAAATTATAATT
Found at i:25972163 original size:12 final size:13
Alignment explanation
Indices: 25972146--25972174 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25972136 TACATTTAAA
25972146 AAAATTA-TAATT
1 AAAATTATTAATT
25972158 AAAATTATTAATT
1 AAAATTATTAATT
25972171 AAAA
1 AAAA
25972175 AATTATACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAATTATTAATT
Found at i:25972488 original size:16 final size:16
Alignment explanation
Indices: 25972462--25972509 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
25972452 TTAAAGTAAA
25972462 ATATTATAAAATATTACT
1 ATATTA-AAAATATTA-T
25972480 AT-TTAAAAATATT-T
1 ATATTAAAAATATTAT
25972494 ATATTAAAATATATTA
1 ATATTAAAA-ATATTA
25972510 AAATAAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 3 0.11
15 6 0.22
16 13 0.48
17 3 0.11
18 2 0.07
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
ATATTAAAAATATTAT
Found at i:25972718 original size:29 final size:29
Alignment explanation
Indices: 25972646--25972705 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
25972636 TGTTAATATA
* * *
25972646 TTAATA-TAA-ATATTAAAATGTATGAAT
1 TTAATATTAATATAATAAAATATATAAAT
25972673 TTAATATTAATATAATAAAATATATAAAT
1 TTAATATTAATATAATAAAATATATAAAT
25972702 TTAA
1 TTAA
25972706 ATTTAAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 6 0.21
28 3 0.11
29 19 0.68
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (29 bp):
TTAATATTAATATAATAAAATATATAAAT
Found at i:25974033 original size:29 final size:30
Alignment explanation
Indices: 25973983--25974042 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 30
25973973 TGGACTTGAA
*
25973983 TTTTTAAATAAAAAAGTTGAAGGAA-TAAAT
1 TTTTTAAATAAAAAAGTAGAA-GAATTAAAT
25974013 TTTTTAAA-ATAAAAA-TAGAAGAATTAAAT
1 TTTTTAAATA-AAAAAGTAGAAGAATTAAAT
25974042 T
1 T
25974043 CTAAATGCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
28 3 0.11
29 11 0.41
30 13 0.48
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (30 bp):
TTTTTAAATAAAAAAGTAGAAGAATTAAAT
Found at i:25978217 original size:61 final size:62
Alignment explanation
Indices: 25978075--25978217 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 62
25978065 TCAAGCTTTA
*
25978075 CTGGGCCTAAGCCCTATT-CAGAAATCAGAGTTAGCTGGGCCTTAGCCCATACCAATATTAAT
1 CTGGGCCT-AGCCCTATTACAGAAATCAGAGTTAGCTGGGCCTTAGCCCATACCAATATCAAT
* * ** *
25978137 CTGGGCCATAGCCC-CTTACAG-TATCAGAGTATA-CTGGGCC-TAGCCCATGTCAGTATCAAT
1 CTGGGCC-TAGCCCTATTACAGAAATCAGAGT-TAGCTGGGCCTTAGCCCATACCAATATCAAT
25978197 CTGGGCCGTAGCCCTATTACA
1 CTGGGCC-TAGCCCTATTACA
25978218 AGTCGAGATA
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
60 29 0.42
61 22 0.32
62 17 0.25
63 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (62 bp):
CTGGGCCTAGCCCTATTACAGAAATCAGAGTTAGCTGGGCCTTAGCCCATACCAATATCAAT
Found at i:25978264 original size:20 final size:20
Alignment explanation
Indices: 25978239--25978284 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
25978229 ATTAGGCCTT
25978239 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
25978259 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
25978278 GCCCATA
1 GCCCATA
25978285 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:25978293 original size:19 final size:20
Alignment explanation
Indices: 25978251--25978294 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
25978241 CCATATTAAC
** *
25978251 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
25978271 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
25978290 ACAGT
1 ACAGT
25978295 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:25979938 original size:32 final size:32
Alignment explanation
Indices: 25979902--25979966 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
25979892 TAAATCCCAT
*
25979902 CCAAATTCCTTGCACTATCAGCAGCAGTCCAC
1 CCAAATTCCTTGCACCATCAGCAGCAGTCCAC
*
25979934 CCAAATTCCTTGCACCATCAGCAGTAGTCCAC
1 CCAAATTCCTTGCACCATCAGCAGCAGTCCAC
25979966 C
1 C
25979967 GCTTGACCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.38, G:0.12, T:0.22
Consensus pattern (32 bp):
CCAAATTCCTTGCACCATCAGCAGCAGTCCAC
Found at i:25980260 original size:32 final size:32
Alignment explanation
Indices: 25980221--25980285 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
25980211 TAAATCCCAT
*
25980221 CCAAATTCCTTGCACCATCAGTAGCAGTCCAC
1 CCAAATTCCTTGCACCATCAGCAGCAGTCCAC
*
25980253 CCAAATTCCTTGCACCATCAGCAGTAGTCCAC
1 CCAAATTCCTTGCACCATCAGCAGCAGTCCAC
25980285 C
1 C
25980286 GCTTGACCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.38, G:0.12, T:0.22
Consensus pattern (32 bp):
CCAAATTCCTTGCACCATCAGCAGCAGTCCAC
Found at i:25980266 original size:319 final size:319
Alignment explanation
Indices: 25979687--25980324 Score: 1240
Period size: 319 Copynumber: 2.0 Consensus size: 319
25979677 GATGTGAATG
25979687 GCCCCAACCTAAATCGACTAACACTTAAAAATACCCAAAACTAAACAAAGAAGAAAAACAACCCA
1 GCCCCAACCTAAATCGACTAACACTTAAAAATACCCAAAACTAAACAAAGAAGAAAAACAACCCA
*
25979752 TACAAGCTAAAATTTTAAGAGCTTTTTCGGTATTTAATTGCCTATAGCCGATTGGTACTACCATG
66 TACAAGCCAAAATTTTAAGAGCTTTTTCGGTATTTAATTGCCTATAGCCGATTGGTACTACCATG
25979817 AGTCCTATTTCGGCATAAAATCCTTCCCAAGTTCAAATTCCATGTTTTGCTCCTAAATTTCAGCC
131 AGTCCTATTTCGGCATAAAATCCTTCCCAAGTTCAAATTCCATGTTTTGCTCCTAAATTTCAGCC
*
25979882 ACCACCAATTTAAATCCCATCCAAATTCCTTGCACTATCAGCAGCAGTCCACCCAAATTCCTTGC
196 ACCACCAATTTAAATCCCATCCAAATTCCTTGCACCATCAGCAGCAGTCCACCCAAATTCCTTGC
*
25979947 ACCATCAGCAGTAGTCCACCGCTTGACCGACTCAAGCCGTTGCTAGGAGAGTTTTGGTC
261 ACCATCAGCAGTAGTCCACCGCTTGACCGACTCAAGCCGCTGCTAGGAGAGTTTTGGTC
25980006 GCCCCAACCTAAATCGACTAACACTTAAAAATACCCAAAACTAAACAAAGAAGAAAAACAACCCA
1 GCCCCAACCTAAATCGACTAACACTTAAAAATACCCAAAACTAAACAAAGAAGAAAAACAACCCA
25980071 TACAAGCCAAAATTTTAAGAGCTTTTTCGGTATTTAATTGCCTATAGCCGATTGGTACTACCATG
66 TACAAGCCAAAATTTTAAGAGCTTTTTCGGTATTTAATTGCCTATAGCCGATTGGTACTACCATG
25980136 AGTCCTATTTCGGCATAAAATCCTTCCCAAGTTCAAATTCCATGTTTTGCTCCTAAATTTCAGCC
131 AGTCCTATTTCGGCATAAAATCCTTCCCAAGTTCAAATTCCATGTTTTGCTCCTAAATTTCAGCC
*
25980201 ACCACCAATTTAAATCCCATCCAAATTCCTTGCACCATCAGTAGCAGTCCACCCAAATTCCTTGC
196 ACCACCAATTTAAATCCCATCCAAATTCCTTGCACCATCAGCAGCAGTCCACCCAAATTCCTTGC
25980266 ACCATCAGCAGTAGTCCACCGCTTGACCGACTCAAGCCGCTGCTAGGAGAGTTTTGGTC
261 ACCATCAGCAGTAGTCCACCGCTTGACCGACTCAAGCCGCTGCTAGGAGAGTTTTGGTC
25980325 AAACTCTAAC
Statistics
Matches: 315, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
319 315 1.00
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (319 bp):
GCCCCAACCTAAATCGACTAACACTTAAAAATACCCAAAACTAAACAAAGAAGAAAAACAACCCA
TACAAGCCAAAATTTTAAGAGCTTTTTCGGTATTTAATTGCCTATAGCCGATTGGTACTACCATG
AGTCCTATTTCGGCATAAAATCCTTCCCAAGTTCAAATTCCATGTTTTGCTCCTAAATTTCAGCC
ACCACCAATTTAAATCCCATCCAAATTCCTTGCACCATCAGCAGCAGTCCACCCAAATTCCTTGC
ACCATCAGCAGTAGTCCACCGCTTGACCGACTCAAGCCGCTGCTAGGAGAGTTTTGGTC
Found at i:25981082 original size:3 final size:3
Alignment explanation
Indices: 25981074--25981159 Score: 172
Period size: 3 Copynumber: 28.7 Consensus size: 3
25981064 AAACATACGA
25981074 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
25981122 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
25981160 CAACATCCAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 83 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:25981403 original size:72 final size:71
Alignment explanation
Indices: 25981283--25981586 Score: 296
Period size: 72 Copynumber: 4.3 Consensus size: 71
25981273 TATTGGGTGT
* * * *
25981283 TGCTCGCACAAGCTTCAGAGATTC-CATAACATGTGTTGGATCTCAAGCCACCGATAAAGAATGA
1 TGCTCACACAAGCTTCAGAGAATCGC--AACATATGTCGGATCTCAAGCCACCGATAAAGAATGA
25981347 TTCGATAC
64 TTCGATAC
* * *
25981355 TGCTCACACAAACTTCAGAGAATCCGCAACATATGTCGGATCTTAAGCCACTGATAAAGAATGAT
1 TGCTCACACAAGCTTCAGAGAAT-CGCAACATATGTCGGATCTCAAGCCACCGATAAAGAATGAT
*
25981420 TCCATGA-
65 TCGAT-AC
* * * * * * *
25981427 TGCTCACACAAACCTCAGAGAAT-GCATCATATGTCAGATCTCAAACCATCGATAAAGAATGGTT
1 TGCTCACACAAGCTTCAGAGAATCGCAACATATGTCGGATCTCAAGCCACCGATAAAGAATGATT
25981491 CGATAC
66 CGATAC
* * * * * * *
25981497 TCCTCACACAAGCTTTAAAGAATC-C-ACA-ATGCCTGATCTCAAGCCATCAATAAAGAATGATT
1 TGCTCACACAAGCTTCAGAGAATCGCAACATATGTCGGATCTCAAGCCACCGATAAAGAATGATT
* *
25981559 CAATTC
66 CGATAC
* *
25981565 TGTTCACACAAGCTTGAGAGAA
1 TGCTCACACAAGCTTCAGAGAA
25981587 GGATCTCATG
Statistics
Matches: 193, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
68 51 0.26
69 3 0.02
70 56 0.29
72 80 0.41
73 2 0.01
74 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (71 bp):
TGCTCACACAAGCTTCAGAGAATCGCAACATATGTCGGATCTCAAGCCACCGATAAAGAATGATT
CGATAC
Found at i:25981503 original size:70 final size:69
Alignment explanation
Indices: 25981321--25981586 Score: 277
Period size: 70 Copynumber: 3.8 Consensus size: 69
25981311 ACATGTGTTG
*
25981321 GATCTCAAGCCACCGATAAAGAATGATTCGATACTGCTCACACAAACTTCAGAGAATCCGCAACA
1 GATCTCAAGCCATCGATAAAGAATGATTCGATACTGCTCACACAAACTTCAGAGAAT--GC-ACA
*
25981386 TATGTCG
63 TATGTCA
* * *
25981393 GATCTTAAGCCA-CTGATAAAGAATGATTCCATGA-TGCTCACACAAACCTCAGAGAATGCATCA
1 GATCTCAAGCCATC-GATAAAGAATGATTCGAT-ACTGCTCACACAAACTTCAGAGAATGCA-CA
25981456 TATGTCA
63 TATGTCA
* * * * * * *
25981463 GATCTCAAACCATCGATAAAGAATGGTTCGATACTCCTCACACAAGCTTTAAAGAATCCACA-AT
1 GATCTCAAGCCATCGATAAAGAATGATTCGATACTGCTCACACAAACTTCAGAGAATGCACATAT
* *
25981527 GCCT
66 GTCA
* * * * * *
25981531 GATCTCAAGCCATCAATAAAGAATGATTCAATTCTGTTCACACAAGCTTGAGAGAA
1 GATCTCAAGCCATCGATAAAGAATGATTCGATACTGCTCACACAAACTTCAGAGAA
25981587 GGATCTCATG
Statistics
Matches: 164, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
68 51 0.31
69 4 0.02
70 56 0.34
71 2 0.01
72 50 0.30
73 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.23
Consensus pattern (69 bp):
GATCTCAAGCCATCGATAAAGAATGATTCGATACTGCTCACACAAACTTCAGAGAATGCACATAT
GTCA
Found at i:25984553 original size:13 final size:13
Alignment explanation
Indices: 25984535--25984565 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
25984525 CGCTTCTCTA
25984535 TATTCAACATAAT
1 TATTCAACATAAT
25984548 TATTCAACATAAT
1 TATTCAACATAAT
25984561 TATTC
1 TATTC
25984566 TTATCACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (13 bp):
TATTCAACATAAT
Found at i:25986457 original size:54 final size:53
Alignment explanation
Indices: 25986344--25986505 Score: 290
Period size: 54 Copynumber: 3.0 Consensus size: 53
25986334 AATGTGAACT
*
25986344 ATGGATTAAATTGAATATTAAGAT-TACTTAATTGATTGAAATTATCTATTTAA
1 ATGGATTAAATTGAATATTAAG-TGTGCTTAATTGATTGAAATTATCTATTTAA
25986397 ATGGATTAAATTGAATATTAAGTGTGCTTAATTTGATTGAAATTATCTATTTAA
1 ATGGATTAAATTGAATATTAAGTGTGCTTAA-TTGATTGAAATTATCTATTTAA
25986451 ATGGATTAAATTGAATATTAAGTGTGCTTAATTGATTGAAATTATCTATTTAA
1 ATGGATTAAATTGAATATTAAGTGTGCTTAATTGATTGAAATTATCTATTTAA
25986504 AT
1 AT
25986506 CAAGATAAAC
Statistics
Matches: 106, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
52 1 0.01
53 52 0.49
54 53 0.50
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.44
Consensus pattern (53 bp):
ATGGATTAAATTGAATATTAAGTGTGCTTAATTGATTGAAATTATCTATTTAA
Found at i:25987548 original size:52 final size:52
Alignment explanation
Indices: 25987470--25987577 Score: 207
Period size: 52 Copynumber: 2.1 Consensus size: 52
25987460 TTAAAAATTA
25987470 TGTTTGGTTGGTGCACTTTAATGTTTACCAAATGTTGTCATTTTAGGTCACT
1 TGTTTGGTTGGTGCACTTTAATGTTTACCAAATGTTGTCATTTTAGGTCACT
*
25987522 TGTTTGGTTGGTGCACTTTAATGTTTACCAAATGTTGTCATTTTTGGTCACT
1 TGTTTGGTTGGTGCACTTTAATGTTTACCAAATGTTGTCATTTTAGGTCACT
25987574 TGTT
1 TGTT
25987578 AAGGATTGTA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.18, C:0.13, G:0.21, T:0.48
Consensus pattern (52 bp):
TGTTTGGTTGGTGCACTTTAATGTTTACCAAATGTTGTCATTTTAGGTCACT
Found at i:25988691 original size:25 final size:27
Alignment explanation
Indices: 25988660--25988718 Score: 74
Period size: 25 Copynumber: 2.3 Consensus size: 27
25988650 TTTATTACTT
25988660 ATATTAATAGT-ATT-TTATT-AATTTA
1 ATATTAATAGTGATTATT-TTAAATTTA
25988685 ATATTAA-AGTGATTATTTTAAATTTA
1 ATATTAATAGTGATTATTTTAAATTTA
25988711 AT-TTAATA
1 ATATTAATA
25988719 TTATCTACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
24 3 0.10
25 16 0.53
26 11 0.37
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (27 bp):
ATATTAATAGTGATTATTTTAAATTTA
Found at i:25989431 original size:12 final size:12
Alignment explanation
Indices: 25989408--25989442 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
25989398 GACATACTTT
25989408 CATAATCAGATG
1 CATAATCAGATG
25989420 CA-AATGCAGATG
1 CATAAT-CAGATG
25989432 CATAATCAGAT
1 CATAATCAGAT
25989443 ACATTTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 3 0.14
12 15 0.71
13 3 0.14
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (12 bp):
CATAATCAGATG
Found at i:25991728 original size:72 final size:72
Alignment explanation
Indices: 25991643--25991819 Score: 223
Period size: 72 Copynumber: 2.5 Consensus size: 72
25991633 ACGTTGACAT
* * * *
25991643 ATTTGG-GCTGCTCACACAAGCTTCAGAGAATTCGCAACATGTTTCGAATCTCAAGCCA-CTGAT
1 ATTTGGTGCTGCTCACACAAGCTTCAGAGAATCCACAACATATGTCGAATCTCAAGCCATC-GAT
25991706 AAAAAATG
65 AAAAAATG
* *
25991714 ATTTGGTGCTGCTCACACAAGCTTCAAAGAATCCACAACATATGTCGAATCTCAAGTCATCGATA
1 ATTTGGTGCTGCTCACACAAGCTTCAGAGAATCCACAACATATGTCGAATCTCAAGCCATCGATA
*
25991779 AAGAATG
66 AAAAATG
** * * *
25991786 ATCCGATACTGCTCACACAAGCTTTAGAGAATCC
1 ATTTGGTGCTGCTCACACAAGCTTCAGAGAATCC
25991820 GCGATTTATA
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
71 6 0.07
72 84 0.92
73 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (72 bp):
ATTTGGTGCTGCTCACACAAGCTTCAGAGAATCCACAACATATGTCGAATCTCAAGCCATCGATA
AAAAATG
Found at i:25993583 original size:23 final size:22
Alignment explanation
Indices: 25993524--25993583 Score: 57
Period size: 26 Copynumber: 2.5 Consensus size: 22
25993514 TCATGTATTT
25993524 TTTTTATTTTACTATTATTTAC
1 TTTTTATTTTACTATTATTTAC
* *
25993546 TTATTTATTAATTTATTATTGTCTTAC
1 TT-TTTA-T--TTTACTATTAT-TTAC
25993573 TTTTTATTTTA
1 TTTTTATTTTA
25993584 AAATTTATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
22 2 0.06
23 8 0.26
24 1 0.03
25 1 0.03
26 13 0.42
27 6 0.19
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (22 bp):
TTTTTATTTTACTATTATTTAC
Found at i:25995012 original size:3 final size:3
Alignment explanation
Indices: 25995004--25995029 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
25994994 TTTATTTAGA
25995004 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
25995030 CATACTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:25996793 original size:12 final size:12
Alignment explanation
Indices: 25996773--25996808 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
25996763 AGTCATTTGA
25996773 CATTCATGCATT
1 CATTCATGCATT
*
25996785 CATTTATGCATT
1 CATTCATGCATT
*
25996797 CATTCATTCATT
1 CATTCATGCATT
25996809 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:26003779 original size:72 final size:72
Alignment explanation
Indices: 26003519--26003806 Score: 346
Period size: 72 Copynumber: 3.9 Consensus size: 72
26003509 TCAAGGGAAA
* * * * *
26003519 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACATGTTGAGGTATTTTTAATTTTTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
26003584 TCAAAA-
66 TCAAAAT
*** * * * * *
26003590 TCAACTCATATTGCGAGTGGTGATTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTG
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATTTCAATTTCTG
26003654 TCTTTCAAAAAAAAAAT
63 T-TTTC------AAAAT
26003671 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
26003736 TCAAAAT
66 TCAAAAT
*
26003743 TCAACTCATATTGCGAGAAATGACTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
26003807 CAAAATGAGT
Statistics
Matches: 189, Mismatches: 16, Indels: 23
0.83 0.07 0.10
Matches are distributed among these distances:
70 1 0.01
71 30 0.16
72 68 0.36
73 24 0.13
74 4 0.02
78 4 0.02
79 24 0.13
80 4 0.02
81 29 0.15
82 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (72 bp):
TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
TCAAAAT
Found at i:26003820 original size:49 final size:49
Alignment explanation
Indices: 26003760--26003855 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
26003750 ATATTGCGAG
*
26003760 AAATGACTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGACTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
*
26003809 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGACTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
26003856 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (49 bp):
AAATGACTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:26003902 original size:121 final size:121
Alignment explanation
Indices: 26003688--26003927 Score: 435
Period size: 121 Copynumber: 2.0 Consensus size: 121
26003678 ATATTGCGAG
*
26003688 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* *
26003753 TTGCGAGAAATGACTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAATTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
26003809 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* *
26003874 TTGCGAGAAATGAATTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAATTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
26003928 TTTCAAAAAA
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 114 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAATTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:26004044 original size:74 final size:74
Alignment explanation
Indices: 26003812--26004083 Score: 386
Period size: 75 Copynumber: 3.7 Consensus size: 74
26003802 CTGTTCAAAA
*
26003812 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATAT
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATAT
**
26003875 TGCGAGAAA
66 TGCGAGAGG
* * *
26003884 TGAATTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTCAAAAAAATCAACTCATA
26003949 TTGCGAGAGG
65 TTGCGAGAGG
* * *
26003959 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTAT
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATAT
*
26004024 TGTGAGAGG
66 TGCGAGAGG
* * *
26004033 TGAGTTGAGCCTCAAGTCACACGCCGAGGTATTTTCAATTTCCGTTTTCAA
1 TGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAATTTCTGTTTTCAA
26004084 TTTCTGCCTT
Statistics
Matches: 177, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
72 39 0.22
73 5 0.03
74 44 0.25
75 60 0.34
76 29 0.16
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (74 bp):
TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATAT
TGCGAGAGG
Found at i:26004238 original size:173 final size:171
Alignment explanation
Indices: 26003934--26004247 Score: 463
Period size: 173 Copynumber: 1.8 Consensus size: 171
26003924 TGTTTTTCAA
*
26003934 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTTC
* * * *
26003999 TGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGTGAGTTGAGCCTCAAGTCACACGCCGAGGTA
66 TGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACACCAAGGTA
26004064 -TTTTCAATTTCCGTTTTCAATTTCTGCCTTTCAAAAAAAT
131 TTTTTCAATTTCCGTTTTCAATTTCTGCCTTTCAAAAAAAT
* * *
26004104 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTTCAAT
* * *
26004168 TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-AGATCACACACTA
63 TTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-TCACACACCA
26004232 AGGTATTTTTCAATTT
126 AGGTATTTTTCAATTT
26004248 ATATTTTTCA
Statistics
Matches: 127, Mismatches: 11, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
169 2 0.02
170 37 0.29
172 26 0.20
173 52 0.41
174 10 0.08
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (171 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTTC
TGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACACCAAGGTA
TTTTTCAATTTCCGTTTTCAATTTCTGCCTTTCAAAAAAAT
Found at i:26004302 original size:76 final size:77
Alignment explanation
Indices: 26004104--26004454 Score: 273
Period size: 77 Copynumber: 4.5 Consensus size: 77
26004094 TCAAAAAAAT
* * * * *
26004104 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTAAGCTATTTTCAATT
* *
26004169 TCTGTCTTTCAA
66 TATATCTTTCAA
* * *
26004181 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTAAGGTATTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTAAGCTA-TTTTCAAT
*
26004246 TTATATTTTTC-A
65 TTATATCTTTCAA
* * ** * *
26004258 AAAAATCAACTCA-ATTGCGAGATGTGAGTTGAGCCTCGGGTCACA-TGTGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTAAGCTATTTTC--AA
* ***
26004321 TCTGTTTTTCAGATTCTGTTTTC
64 ------TTT-ATA-TCT-TTCAA
* * * ** *
26004344 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGA-TGAGCTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCAC-ACACTAAGCTATTTTCAAT
*
26004408 TT-T-TTTTTCAA
65 TTATATCTTTCAA
*
26004419 AAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
26004455 TTTTTAATTT
Statistics
Matches: 222, Mismatches: 35, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
74 5 0.02
75 13 0.06
76 60 0.27
77 62 0.28
78 16 0.07
80 3 0.01
82 3 0.01
83 2 0.01
84 2 0.01
85 2 0.01
86 15 0.07
87 28 0.13
88 11 0.05
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (77 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTAAGCTATTTTCAATT
TATATCTTTCAA
Found at i:26004472 original size:30 final size:30
Alignment explanation
Indices: 26004436--26004497 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
26004426 CAATTCATAT
26004436 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
26004466 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
26004496 TG
1 TG
26004498 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:26004611 original size:248 final size:240
Alignment explanation
Indices: 26004104--26004659 Score: 723
Period size: 248 Copynumber: 2.3 Consensus size: 240
26004094 TCAAAAAAAT
*
26004104 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
26004169 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTAAG
66 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTAAG
* * *
26004234 GTATTTTTCAATTTATATTTTTCAAAAAATCAACTCAATTGCGAGATGTGAGTTGAGCCTCGGGT
131 GTATTTTTCAATTTATATTTTTCAAAAAATCAACTCAATTGCGAGAGGTGAGTTGAACCTCGAGT
* * **
26004299 CACATGTGAGGTATTTTCAAAATCTGTTTTTCAGATTCTGTTTTC
196 CACATATGAGGTATTTTCAAAATCTGCTTTTCAGATTAAGTTTTC
* *
26004344 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGATGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
* * * *
26004409 T-T-TTTTTCAAAAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGA
66 TCTGTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-A
* * * * * * *
26004471 GAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGTGAGAGGTGAGT
124 CA-CTAAGGT-A-T-TTTTCAATTTATATTTTTCAAAAAATCAACTCA-ATTGCGAGAGGTGAGT
26004534 TGAACCTTC-AGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCA-AGTTAAG-TTTC
184 TGAACC-TCGAGTCACATAT-GAGGTATTTTCAAAATCTGCTTTTCAGA-TTAAGTTTTC
26004591 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
26004656 TTCT
65 TTCT
26004660 ATTTTTAATG
Statistics
Matches: 276, Mismatches: 23, Indels: 25
0.85 0.07 0.08
Matches are distributed among these distances:
238 12 0.04
239 30 0.11
240 64 0.23
241 3 0.01
242 2 0.01
243 1 0.00
244 2 0.01
245 4 0.01
246 14 0.05
247 45 0.16
248 98 0.36
249 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (240 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTAAG
GTATTTTTCAATTTATATTTTTCAAAAAATCAACTCAATTGCGAGAGGTGAGTTGAACCTCGAGT
CACATATGAGGTATTTTCAAAATCTGCTTTTCAGATTAAGTTTTC
Found at i:26007197 original size:26 final size:26
Alignment explanation
Indices: 26007168--26007220 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26007158 TAAGACATCA
26007168 AGTAATCAACTAGGTACCAACTCTTG
1 AGTAATCAACTAGGTACCAACTCTTG
26007194 AGTAATCAACTAGGTACCAACTCTTG
1 AGTAATCAACTAGGTACCAACTCTTG
26007220 A
1 A
26007221 ACCCATTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (26 bp):
AGTAATCAACTAGGTACCAACTCTTG
Found at i:26010307 original size:46 final size:46
Alignment explanation
Indices: 26010255--26010575 Score: 437
Period size: 46 Copynumber: 7.0 Consensus size: 46
26010245 GCTCTCTGAA
* * *
26010255 ATGAAATGTGTAAGACCATGGTTGAAAGATGCCATGGCAACTTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
26010301 ATGAAATGTGTAAGACCATGGTTGAAAGATGCCATGGCAACTTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26010347 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26010393 ATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
26010439 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** ** *
26010485 GGGAAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGAC
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
26010532 A-GAAAATGAGTAAAACCATAGTTGAAAGATACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
26010576 TCGAAAATAA
Statistics
Matches: 255, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 215 0.84
47 40 0.16
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:26015376 original size:46 final size:44
Alignment explanation
Indices: 26015325--26015501 Score: 194
Period size: 46 Copynumber: 3.9 Consensus size: 44
26015315 ATGGTTGAGC
26015325 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
26015369 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
26015418 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * *
26015463 CACCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26015502 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:26015482 original size:93 final size:93
Alignment explanation
Indices: 26015323--26015493 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
26015313 GGATGGTTGA
*** *
26015323 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
26015388 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
26015416 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
26015481 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26015494 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:26018308 original size:44 final size:43
Alignment explanation
Indices: 26018159--26018320 Score: 199
Period size: 43 Copynumber: 3.8 Consensus size: 43
26018149 TGGAAAGTTC
* *
26018159 ATACAATGCCAACGTCCCAGACATGGTCTTACATGT-AATCAA
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCAA
* *
26018201 ATACCGATGCC-TCTGTCCCAGGCAG-GGTCTTACATG-AAATCAA
1 ATA-CGATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAAATCAA
26018244 ATACGATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCATA
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCA-A
*
26018288 AGT-CGATGCCAACGTTCCAGACGTGGTCTTACA
1 A-TACGATGCCAACGTCCCAGACGTGGTCTTACA
26018321 CGATAACACA
Statistics
Matches: 104, Mismatches: 7, Indels: 16
0.82 0.06 0.13
Matches are distributed among these distances:
41 1 0.01
42 30 0.29
43 41 0.39
44 31 0.30
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
ATACGATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCAA
Found at i:26022755 original size:51 final size:51
Alignment explanation
Indices: 26022679--26023098 Score: 349
Period size: 51 Copynumber: 8.6 Consensus size: 51
26022669 ATTAAAGCTG
* * *
26022679 TAAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTAAAGTTACAAGTTA
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* *
26022730 TAAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAGATTGAAGATAGC--G---
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTAAAGCTA-CAAGTTA
* * * *
26022777 --AATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAGAGCTACAAGTTA
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * ** * * *
26022826 TAAATCTTATCTCCTTGAAGTTGCAGTAGAGTAGATT-GAG-GA-TAG---
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * *
26022871 CAAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTTA
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * * * * *
26022922 CAAACCTTATCTACCTGAAGTTGCAGTGGAGCAGATTGAAG--A-TAG---
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * *
26022967 TGAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
** * * * ***
26023018 TAAATCTTATCTCTTTGAGGTTGTAGTGGAACAAATTAAAGCTATGGGTTA
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
*
26023069 TGAATCTTATCTCCCTGAAGTTGCAGTGGA
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGA
26023099 GAAGATTGAA
Statistics
Matches: 288, Mismatches: 59, Indels: 44
0.74 0.15 0.11
Matches are distributed among these distances:
44 1 0.00
45 97 0.34
46 6 0.02
47 2 0.01
48 8 0.03
49 2 0.01
50 7 0.02
51 164 0.57
52 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (51 bp):
TAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
Found at i:26023047 original size:96 final size:96
Alignment explanation
Indices: 26022637--26023030 Score: 610
Period size: 96 Copynumber: 4.1 Consensus size: 96
26022627 CATCATGACC
* * *
26022637 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-GTAAATCTTATTTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTT
*
26022701 GCAGTGGAACAGATTAAAGTTACAAGTTATA
66 GCAGTGGAACAGATTAAAGCTACAAGTTATA
* *
26022732 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTT
* *
26022797 ACAGTGGAACAGATTAGAGCTACAAGTTATA
66 GCAGTGGAACAGATTAAAGCTACAAGTTATA
* * * * *
26022828 AATCTTATCTCCTTGAAGTTGCAGTAGAGTAGATTGAGGATAGCAAATCTTATTTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTT
* *
26022893 GCAGTGGAATAGATTAAAGCTACAAGTTACA
66 GCAGTGGAACAGATTAAAGCTACAAGTTATA
* * **
26022924 AACCTTATCTACCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTGAATCTTATTTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTT
26022989 GCAGTGGAACAGATTAAAGCTACAAGTTATA
66 GCAGTGGAACAGATTAAAGCTACAAGTTATA
26023020 AATCTTATCTC
1 AATCTTATCTC
26023031 TTTGAGGTTG
Statistics
Matches: 266, Mismatches: 32, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
95 38 0.14
96 228 0.86
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (96 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTT
GCAGTGGAACAGATTAAAGCTACAAGTTATA
Found at i:26023125 original size:192 final size:190
Alignment explanation
Indices: 26022637--26023098 Score: 557
Period size: 192 Copynumber: 2.4 Consensus size: 190
26022627 CATCATGACC
* * * * * * * * *
26022637 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-GTAAATCTTATTTCCCTAAAGTT
1 AATCTTATCTCCTTGAAGTTGCAGTAGAACAAATTAAGGATAGCAAATCTTATCTCCCTGAAGTT
* * * * *
26022701 GCAGTGGAACAGATTAAAGTTACAAGTTATAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGAT
66 GCAGTGGAATAGATTAAAG-CACAAG-TACAAATCTTATCTACCTGAAGTTGCAGTGGAGCAGAT
*
26022766 TGAAGATAGCGAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAGAGCTACAAGTTATA
129 TGAAGATAGCGAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATA
** * * *
26022828 AATCTTATCTCCTTGAAGTTGCAGTAGAGTAGATTGAGGATAGCAAATCTTATTTCCCTGAAGTT
1 AATCTTATCTCCTTGAAGTTGCAGTAGAACAAATTAAGGATAGCAAATCTTATCTCCCTGAAGTT
*
26022893 GCAGTGGAATAGATTAAAGCTACAAGTTACAAACCTTATCTACCTGAAGTTGCAGTGGAGCAGAT
66 GCAGTGGAATAGATTAAAGC-ACAAG-TACAAATCTTATCTACCTGAAGTTGCAGTGGAGCAGAT
* *
26022958 TGAAGATAGTGAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTATA
129 TGAAGATAGCGAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATA
* * * * * * *
26023020 AATCTTATCTCTTTGAGGTTGTAGTGGAACAAATTAAAGCTATGGGTTATGAATCTTATCTCCCT
1 AATCTTATCTCCTTGAAGTTGCAGTAGAACAAATT-AAG-GAT-AG-CA--AATCTTATCTCCCT
26023085 GAAGTTGCAGTGGA
60 GAAGTTGCAGTGGA
26023099 GAAGATTGAA
Statistics
Matches: 234, Mismatches: 29, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
191 35 0.15
192 166 0.71
193 2 0.01
194 2 0.01
195 1 0.00
196 1 0.00
198 27 0.12
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (190 bp):
AATCTTATCTCCTTGAAGTTGCAGTAGAACAAATTAAGGATAGCAAATCTTATCTCCCTGAAGTT
GCAGTGGAATAGATTAAAGCACAAGTACAAATCTTATCTACCTGAAGTTGCAGTGGAGCAGATTG
AAGATAGCGAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATA
Found at i:26023139 original size:45 final size:45
Alignment explanation
Indices: 26023071--26023375 Score: 211
Period size: 44 Copynumber: 6.8 Consensus size: 45
26023061 ATGGGTTATG
** * * *
26023071 AATCTTATCTCCCTGAAGTTGCAGTGGAGAAGATTGAAGATAGAA
1 AATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCA
* * * **
26023116 AATCTTATCTTTTTGAAGCTGCAGTAGAGCAGATTAAAG-CCGCA
1 AATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCA
* * *
26023160 AATCTTATCTCCTTGAAGTTGCAGTTGAGCAGATTGAAAATAGCA
1 AATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCA
* * * * * * **
26023205 ACTCTTATCTCTCTGAAGTTGCAGTAAAGTAAATTAAAGCCA-CA
1 AATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCA
* * * * * *
26023249 AACCTTATCTCTCTGAAGTTGCAATGGAGCAGATTGAAAATAGTA
1 AATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCA
* * * * * * * *
26023294 GATCTTATCTCTCTAAAATTACAGTAGAGTAGATTAAAGTTA-CA
1 AATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCA
* * ** * * *
26023338 AACCTTATTTCCCTGAAGTTACAGTGGAGTAGATTGAA
1 AATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTGAA
26023376 TATACGAATC
Statistics
Matches: 197, Mismatches: 61, Indels: 5
0.75 0.23 0.02
Matches are distributed among these distances:
44 99 0.50
45 98 0.50
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (45 bp):
AATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCA
Found at i:26023222 original size:89 final size:88
Alignment explanation
Indices: 26023074--26023375 Score: 361
Period size: 89 Copynumber: 3.4 Consensus size: 88
26023064 GGTTATGAAT
* * * * *
26023074 CTTATCTCCCTGAAGTTGCAGTGGAGAAGATTGAAGATAGAAAATCTTATCTTTTTGAAGCTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAG-AAATCTTATCTCTCTGAAGTTGCA
* * *
26023139 GTAGAGCAGATTAAAGCCGCAAAT
65 GTAGAGTAGATTAAAGCCACAAAC
* * *
26023163 CTTATCTCCTTGAAGTTGCAGTTGAGCAGATTGAAAATAGCAACTCTTATCTCTCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAG-AAATCTTATCTCTCTGAAGTTGCA
* *
26023228 GTAAAGTAAATTAAAGCCACAAAC
65 GTAGAGTAGATTAAAGCCACAAAC
* * * * * *
26023252 CTTATCTCTCTGAAGTTGCAATGGAGCAGATTGAAAATAGTAGATCTTATCTCTCTAAAATTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAG-AAATCTTATCTCTCTGAAGTTGCA
**
26023317 GTAGAGTAGATTAAAGTTACAAAC
65 GTAGAGTAGATTAAAGCCACAAAC
* * *
26023341 CTTATTTCCCTGAAGTTACAGTGGAGTAGATTGAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
26023376 TATACGAATC
Statistics
Matches: 180, Mismatches: 33, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
89 180 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (88 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAGAAATCTTATCTCTCTGAAGTTGCAG
TAGAGTAGATTAAAGCCACAAAC
Found at i:26026246 original size:8 final size:7
Alignment explanation
Indices: 26026216--26026260 Score: 58
Period size: 8 Copynumber: 6.4 Consensus size: 7
26026206 CTTTCATGAA
26026216 ATTTATT
1 ATTTATT
26026223 A-TTATT
1 ATTTATT
26026229 A-TTATT
1 ATTTATT
26026235 ATTTACTT
1 ATTTA-TT
26026243 ATTTATTT
1 ATTTA-TT
26026251 ATTTATT
1 ATTTATT
26026258 ATT
1 ATT
26026261 ACAATTTCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
6 12 0.34
7 9 0.26
8 14 0.40
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (7 bp):
ATTTATT
Found at i:26026317 original size:18 final size:18
Alignment explanation
Indices: 26026290--26026332 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
26026280 CATTTTTTTA
*
26026290 TTTTACTATTAT-TTACT
1 TTTTATTATTATCTTACT
*
26026307 TATTTATTATTGTCTTACT
1 T-TTTATTATTATCTTACT
26026326 TTTTATT
1 TTTTATT
26026333 TTAAATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 15 0.68
19 6 0.27
ACGTcount: A:0.21, C:0.09, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTATTATTATCTTACT
Found at i:26029642 original size:79 final size:79
Alignment explanation
Indices: 26029552--26029699 Score: 208
Period size: 79 Copynumber: 1.9 Consensus size: 79
26029542 AATCTAATCA
* *
26029552 AATCAATTATCCTTAATATAAGAATACAAAAGA-CTGTAAAATCAACTCATATCTTCATGGATTG
1 AATCAATTATCCTTAATATAAGAATACAAAAGAGC-ATAAAATCAACTCATATATTCATGGATTG
26029616 CATATATCAATATAT
65 CATATATCAATATAT
* ** * * *
26029631 AATCAATTATCCTTAATGTAAGGTTACAAAAGAGCATAAAGTCAGCTTATATATTCATGGATTGC
1 AATCAATTATCCTTAATATAAGAATACAAAAGAGCATAAAATCAACTCATATATTCATGGATTGC
26029696 ATAT
66 ATAT
26029700 CTTAATACAT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
79 59 0.98
80 1 0.02
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (79 bp):
AATCAATTATCCTTAATATAAGAATACAAAAGAGCATAAAATCAACTCATATATTCATGGATTGC
ATATATCAATATAT
Found at i:26035425 original size:2 final size:2
Alignment explanation
Indices: 26035418--26035443 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26035408 AATGGTATGC
26035418 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
26035444 GTTAAATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26039463 original size:3 final size:3
Alignment explanation
Indices: 26039455--26039493 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
26039445 ATATGTTTAA
26039455 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26039494 GAAAATGAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26047324 original size:47 final size:45
Alignment explanation
Indices: 26047179--26047340 Score: 148
Period size: 47 Copynumber: 3.5 Consensus size: 45
26047169 TGTATGGGCT
* * * * *
26047179 AGTGTAAG-GCATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCAT-TGACTTGAGATGT-AGCC
* * * * *
26047225 AGTGTAAGA-CATGTCTAGCACATGCATTGGCTATGAAATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATTGACT-TGAGATG-TAGCC
*
26047271 AATGTAAGACCATGTCTGGGACATGGCATTGACTTGAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGACTTGAGATGT-AGCC
*
26047318 AGTGTAAGACCGTGTCTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
26047341 AGGCATCGGC
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
45 3 0.03
46 40 0.43
47 43 0.46
48 8 0.09
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGCATTGACTTGAGATGTAGCC
Found at i:26050557 original size:89 final size:89
Alignment explanation
Indices: 26050406--26050579 Score: 312
Period size: 89 Copynumber: 2.0 Consensus size: 89
26050396 TCAACTAAAG
26050406 TTTGTGTTGATATTGAAATCATTATATTAATGATACATCGTTGCCTATAAGACTAGTTAATCCTA
1 TTTGTGTTGATATTGAAATCATTATATTAATGATACATCGTTGCCTATAAGACTAGTTAATCCTA
*
26050471 GATTCATTTACTTTCTATTAATAA
66 GATTCATTTACTTTCCATTAATAA
* * *
26050495 TTTGTGTTGATATTGAAATCATTATATTAATGATACATCGTTGCTTATAAGACTGGTTAATCCTC
1 TTTGTGTTGATATTGAAATCATTATATTAATGATACATCGTTGCCTATAAGACTAGTTAATCCTA
26050560 GATTCATTTACTTTCCATTA
66 GATTCATTTACTTTCCATTA
26050580 GTAAACTTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 81 1.00
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.44
Consensus pattern (89 bp):
TTTGTGTTGATATTGAAATCATTATATTAATGATACATCGTTGCCTATAAGACTAGTTAATCCTA
GATTCATTTACTTTCCATTAATAA
Found at i:26054096 original size:35 final size:35
Alignment explanation
Indices: 26054050--26054119 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
26054040 TCCAAGTCTT
*
26054050 ATGGGGGCACGTGGTTGGCTAACACAGTGTCAAAG
1 ATGGGGGCACGTGGTCGGCTAACACAGTGTCAAAG
26054085 ATGGGGGCACGTGGTCGGCTAACACAGTGTCAAAG
1 ATGGGGGCACGTGGTCGGCTAACACAGTGTCAAAG
26054120 TTCTCTCCAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.26, C:0.19, G:0.37, T:0.19
Consensus pattern (35 bp):
ATGGGGGCACGTGGTCGGCTAACACAGTGTCAAAG
Found at i:26063219 original size:2 final size:2
Alignment explanation
Indices: 26063212--26063255 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
26063202 GTTATTGAGT
26063212 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26063254 TA
1 TA
26063256 CATTCGGTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26064016 original size:16 final size:15
Alignment explanation
Indices: 26063989--26064018 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26063979 ATTAATAGGA
26063989 TATTTTTTTATTTTT
1 TATTTTTTTATTTTT
26064004 TATTTTATTTATTTT
1 TATTTT-TTTATTTT
26064019 ATTTTTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TATTTTTTTATTTTT
Found at i:26074835 original size:15 final size:16
Alignment explanation
Indices: 26074799--26074835 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
26074789 AAAATATATA
*
26074799 TATAATTATTAAATAG
1 TATAATTATCAAATAG
26074815 TA-AATTA-CAAATAG
1 TATAATTATCAAATAG
26074829 TATAATT
1 TATAATT
26074836 TATTTTTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 8 0.42
15 9 0.47
16 2 0.11
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (16 bp):
TATAATTATCAAATAG
Found at i:26083488 original size:2 final size:2
Alignment explanation
Indices: 26083481--26083513 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26083471 GCATACAAAG
26083481 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26083514 GCATGTATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26083933 original size:18 final size:19
Alignment explanation
Indices: 26083863--26083926 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 19
26083853 AAAAGAATTT
* *
26083863 ATAAAATAACACATAATAT
1 ATAAAATAATACATAATAA
**
26083882 A-AAAAT-AT-CATTTTAAA
1 ATAAAATAATACATAAT-AA
26083899 ATAAAATAATACATAATAA
1 ATAAAATAATACATAATAA
26083918 AT-AAATAAT
1 ATAAAATAAT
26083927 TGATAATTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
16 4 0.11
17 3 0.09
18 17 0.49
19 7 0.20
20 4 0.11
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (19 bp):
ATAAAATAATACATAATAA
Found at i:26084014 original size:19 final size:19
Alignment explanation
Indices: 26083992--26084092 Score: 85
Period size: 19 Copynumber: 5.7 Consensus size: 19
26083982 TTTAAAATTT
26083992 TAAATAATATAATGAATAA
1 TAAATAATATAATGAATAA
*
26084011 TAAATAATATAATGGATAA
1 TAAATAATATAATGAATAA
* *
26084030 TATATAATATACAT-AA-CA
1 TAAATAATATA-ATGAATAA
*
26084048 TATATAA-A-AAT-AATAA
1 TAAATAATATAATGAATAA
*
26084064 TAAGTAATAT-A-GAATAA
1 TAAATAATATAATGAATAA
26084081 -AAATAATA-AATG
1 TAAATAATATAATG
26084093 TTATATAATA
Statistics
Matches: 67, Mismatches: 8, Indels: 16
0.74 0.09 0.18
Matches are distributed among these distances:
15 4 0.06
16 15 0.22
17 9 0.13
18 8 0.12
19 29 0.43
20 2 0.03
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (19 bp):
TAAATAATATAATGAATAA
Found at i:26084097 original size:23 final size:25
Alignment explanation
Indices: 26084051--26084111 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
26084041 CATAACATAT
26084051 ATAAAAATAATAATAAGTAATATAGA
1 ATAAAAATAATAATAAGT-ATATAGA
* *
26084077 ATAAAAATAATAA-ATGT-TATATA
1 ATAAAAATAATAATAAGTATATAGA
26084100 ATAAAATATAAT
1 ATAAAA-ATAAT
26084112 TTGAATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 11 0.34
24 5 0.16
25 3 0.09
26 13 0.41
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (25 bp):
ATAAAAATAATAATAAGTATATAGA
Found at i:26084381 original size:2 final size:2
Alignment explanation
Indices: 26084376--26084400 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26084366 TATAAAAAAA
26084376 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
26084401 GAATAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26087528 original size:18 final size:17
Alignment explanation
Indices: 26087501--26087540 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
26087491 TGTCTTTCTT
26087501 TTTATTT-TTTTA-TTA
1 TTTATTTATTTTACTTA
26087516 TTTCATTTATTTTACTTA
1 TTT-ATTTATTTTACTTA
26087534 TTTATTT
1 TTTATTT
26087541 TATCATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 3 0.14
16 4 0.18
17 9 0.41
18 6 0.27
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTATTTATTTTACTTA
Found at i:26087537 original size:25 final size:25
Alignment explanation
Indices: 26087500--26087549 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
26087490 TTGTCTTTCT
* *
26087500 TTTTATTTTTTTATTATT-TCATTTA
1 TTTTACTTATTTATT-TTATCATTTA
26087525 TTTTACTTATTTATTTTATCATTTA
1 TTTTACTTATTTATTTTATCATTTA
26087550 ACTAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (25 bp):
TTTTACTTATTTATTTTATCATTTA
Found at i:26089314 original size:210 final size:210
Alignment explanation
Indices: 26089026--26089640 Score: 944
Period size: 210 Copynumber: 2.9 Consensus size: 210
26089016 AGTCTAATCG
* ** * **
26089026 TCTGAAGGTCAGATCTGCTGTGTATCTG-CTCTCCATTGAAGTGGAAATGCCAGACTTCGATTTG
1 TCTGAAGGTGAGATCTGCTACGTGTCTGCCT-TCCATCAAAGTGGAAATGCCAGACTTCGATTTG
* *
26089090 TTCTCTGACAATACAGAGACGAAAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCA
65 TTCTCTGACAATACAGAGACGACAAATAATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCA
*
26089155 AATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCTTAGATC
130 AATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATC
*
26089220 TTCTTCAGCGCAAACA
195 TACTTCAGCGCAAACA
* *
26089236 TCTGAAGGTGAGATCTGTTACGTGTCTTCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGT
1 TCTGAAGGTGAGATCTGCTACGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGT
* * * * *
26089301 TCTCTGACAATACAAAGACGACAAATTATCTTAGATTTACTTCATCGTAAACACGTGAAGGTCAA
66 TCTCTGACAATACAGAGACGACAAATAATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAA
* * * * *
26089366 ATCAGCCATCTCTTTGATCTGCTTCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATCT
131 ATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCT
* *
26089431 ACTTCAGTGTAAACA
196 ACTTCAGCGCAAACA
* *
26089446 TCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAAACTTCGATTTGT
1 TCTGAAGGTGAGATCTGCTACGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGT
* *
26089511 TCTCTGACAATACAGAGGCGACAAATAATCTTAGATTTGCTTCATTGTAAACACGTGAAAGCCAA
66 TCTCTGACAATACAGAGACGACAAATAATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAA
* *
26089576 ATCAGCTATATCTTCGATCTACTCCCCACCGAATACAGAGAGATAAGATCTGTCATCTTGGATCT
131 ATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCT
26089641 GCCTCAATGA
Statistics
Matches: 363, Mismatches: 41, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
210 361 0.99
211 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (210 bp):
TCTGAAGGTGAGATCTGCTACGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGT
TCTCTGACAATACAGAGACGACAAATAATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAA
ATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCT
ACTTCAGCGCAAACA
Found at i:26093300 original size:124 final size:124
Alignment explanation
Indices: 26093080--26093330 Score: 466
Period size: 124 Copynumber: 2.0 Consensus size: 124
26093070 TCAAAACCTC
26093080 AATATGTTCTTTTTCTGTACGTGACTTGGCAATCATATCATCAACATATACCTCAATATCCTTAT
1 AATATGTTCTTTTTCTGTACGTGACTTGGCAATCATATCATCAACATATACCTCAATATCCTTAT
*
26093145 GCATCATATCGTGGAACAAGTTCACCATGGCCCTTTGGTACGTTGCCCCTGCATTCTTT
66 GCATCATATCATGGAACAAGTTCACCATGGCCCTTTGGTACGTTGCCCCTGCATTCTTT
* *
26093204 AATATGTTCTTTTTCTGTATGTGACTTGGCAATCATATTATCAACATATACCTCAATATCCTTAT
1 AATATGTTCTTTTTCTGTACGTGACTTGGCAATCATATCATCAACATATACCTCAATATCCTTAT
*
26093269 GCATCATATCATGGAACAAGTTCACCATGGCCCTTTGGTACGTTGCCCCTGCGTTCTTT
66 GCATCATATCATGGAACAAGTTCACCATGGCCCTTTGGTACGTTGCCCCTGCATTCTTT
26093328 AAT
1 AAT
26093331 CCAAACGGCA
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 123 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (124 bp):
AATATGTTCTTTTTCTGTACGTGACTTGGCAATCATATCATCAACATATACCTCAATATCCTTAT
GCATCATATCATGGAACAAGTTCACCATGGCCCTTTGGTACGTTGCCCCTGCATTCTTT
Done.