Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 98 of 345
Found at i:26553743 original size:44 final size:45
Alignment explanation
Indices: 26553690--26553792 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
26553680 TGTCTTTGAC
* * *
26553690 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** * *
26553734 ATGGACTTACATGGCTCAATCTTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
26553780 ATGGACTTACATG
1 ATGGACTTACATG
26553793 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:26553791 original size:46 final size:44
Alignment explanation
Indices: 26553712--26553797 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
26553702 GAATTATTCC
*
26553712 TGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATCT
1 TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCT
*
26553756 TGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
26553798 TTTCTGTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 15 0.39
46 23 0.61
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (44 bp):
TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCT
Found at i:26555475 original size:21 final size:21
Alignment explanation
Indices: 26555446--26555514 Score: 102
Period size: 21 Copynumber: 3.3 Consensus size: 21
26555436 GGGCCTACGC
* *
26555446 GCCCATGTGAAGGCCACACAT
1 GCCCGTGTGGAGGCCACACAT
26555467 GCCCGTGTGGAGGCCACACAT
1 GCCCGTGTGGAGGCCACACAT
* *
26555488 GCCCCTGTGGAGGCCACACAC
1 GCCCGTGTGGAGGCCACACAT
26555509 GCCCGT
1 GCCCGT
26555515 ATAGATAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.20, C:0.38, G:0.29, T:0.13
Consensus pattern (21 bp):
GCCCGTGTGGAGGCCACACAT
Found at i:26559079 original size:51 final size:51
Alignment explanation
Indices: 26559024--26559127 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
26559014 TATTTTATAG
*
26559024 GAACTCGGTGAAAGGAAAAATCCACATTAAGAATTTATTTTTTATTTCAAT
1 GAACTCGGTGAAAGGAAAAATCCACACTAAGAATTTATTTTTTATTTCAAT
26559075 GAACTCGGTGAAAGGAAAAATCCACACTAAGAATTTATTTTTTATTTCAAT
1 GAACTCGGTGAAAGGAAAAATCCACACTAAGAATTTATTTTTTATTTCAAT
26559126 GA
1 GA
26559128 GCTAACAGAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (51 bp):
GAACTCGGTGAAAGGAAAAATCCACACTAAGAATTTATTTTTTATTTCAAT
Found at i:26561149 original size:71 final size:72
Alignment explanation
Indices: 26561032--26561177 Score: 258
Period size: 71 Copynumber: 2.0 Consensus size: 72
26561022 TTATAAGAGA
**
26561032 TAGTTTGATAAAAAAAACTTGACCCGTTATCTATGCAAGATAGGAACCAGAGGTAAGGTTAAACA
1 TAGTTTGATAAAAAAAACTTGACCCACTATCTATGCAAGATAGGAACCAGAGGTAAGGTTAAACA
*
26561097 CCACATT
66 CCACACT
26561104 TAGTTTGAT-AAAAAAACTTGACCCACTATCTATGCAAGATAGGAACCAGAGGTAAGGTTAAACA
1 TAGTTTGATAAAAAAAACTTGACCCACTATCTATGCAAGATAGGAACCAGAGGTAAGGTTAAACA
26561168 CCACACT
66 CCACACT
26561175 TAG
1 TAG
26561178 AAAAGTGATA
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 62 0.87
72 9 0.13
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (72 bp):
TAGTTTGATAAAAAAAACTTGACCCACTATCTATGCAAGATAGGAACCAGAGGTAAGGTTAAACA
CCACACT
Found at i:26562931 original size:39 final size:39
Alignment explanation
Indices: 26562877--26562954 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
26562867 CAGCAATGAC
26562877 GTTAGTTTCAAAAATCACTAAAAATAGTAGAAATAGAAT
1 GTTAGTTTCAAAAATCACTAAAAATAGTAGAAATAGAAT
26562916 GTTAGTTTCAAAAATCACTAAAAATAGTAGAAATAGAAT
1 GTTAGTTTCAAAAATCACTAAAAATAGTAGAAATAGAAT
26562955 TAGAAGGTGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (39 bp):
GTTAGTTTCAAAAATCACTAAAAATAGTAGAAATAGAAT
Found at i:26565235 original size:26 final size:24
Alignment explanation
Indices: 26565205--26565252 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
26565195 ATAAAAAAAA
*
26565205 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAA-CAAATATAT
26565231 TTAAAAACATAAAAACAAATAT
1 TTAAAAACATAAAAACAAATAT
26565253 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TTAAAAACATAAAAACAAATATAT
Found at i:26570933 original size:17 final size:17
Alignment explanation
Indices: 26570913--26570951 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
26570903 AATAATACCT
26570913 AAAATATAAATTAATGC
1 AAAATATAAATTAATGC
*
26570930 AAAATATAAATTAATGT
1 AAAATATAAATTAATGC
26570947 AAAAT
1 AAAAT
26570952 TTTAAATATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (17 bp):
AAAATATAAATTAATGC
Found at i:26584458 original size:13 final size:13
Alignment explanation
Indices: 26584440--26584469 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26584430 TATAAATTTA
26584440 CATGTATTTATCG
1 CATGTATTTATCG
*
26584453 CATGTATTTATTG
1 CATGTATTTATCG
26584466 CATG
1 CATG
26584470 AATAATTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.47
Consensus pattern (13 bp):
CATGTATTTATCG
Found at i:26585194 original size:21 final size:21
Alignment explanation
Indices: 26585144--26585192 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
26585134 TATTAATTAC
26585144 AAATATTTAATAATTATATTT
1 AAATATTTAATAATTATATTT
26585165 AAATATTTAA-AA-TATAGTTT
1 AAATATTTAATAATTATA-TTT
*
26585185 ATATATTT
1 AAATATTT
26585193 TAATTAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 4 0.15
20 12 0.46
21 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
AAATATTTAATAATTATATTT
Found at i:26586130 original size:21 final size:21
Alignment explanation
Indices: 26586104--26586144 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
26586094 AACATATGGC
26586104 TGGAGGGGAGCAGAAAAAGGG
1 TGGAGGGGAGCAGAAAAAGGG
26586125 TGGAGGGGAGCAGAAAAAGG
1 TGGAGGGGAGCAGAAAAAGG
26586145 CTGGCGGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.51, T:0.05
Consensus pattern (21 bp):
TGGAGGGGAGCAGAAAAAGGG
Found at i:26590704 original size:42 final size:42
Alignment explanation
Indices: 26590656--26590742 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
26590646 AAATATAGCC
26590656 CTTGATGTTACTCTTGATTATAAAAGTGAGTAATATAGTTTT
1 CTTGATGTTACTCTTGATTATAAAAGTGAGTAATATAGTTTT
26590698 CTTGATGTTACTCTTGATTATAAAAGTGAGTAATATAGTTTT
1 CTTGATGTTACTCTTGATTATAAAAGTGAGTAATATAGTTTT
26590740 CTT
1 CTT
26590743 TCTTACATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (42 bp):
CTTGATGTTACTCTTGATTATAAAAGTGAGTAATATAGTTTT
Found at i:26591267 original size:24 final size:23
Alignment explanation
Indices: 26591230--26591274 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
26591220 AAATAAATTA
* *
26591230 ATTTTTCTGTTAAAATTTTATTT
1 ATTTTTCTGGTAAAAATTTATTT
26591253 ATTTTTACTGGTAAAAATTTAT
1 ATTTTT-CTGGTAAAAATTTAT
26591275 CCTTATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (23 bp):
ATTTTTCTGGTAAAAATTTATTT
Found at i:26592496 original size:23 final size:22
Alignment explanation
Indices: 26592453--26592500 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
26592443 TCCATTTGGT
* *
26592453 TCTTCTTTTGTTTTGATTTTTTA
1 TCTTCTTTTGATTGGA-TTTTTA
26592476 TCTTCTTTTCGATTGGA-TTTTA
1 TCTTCTTTT-GATTGGATTTTTA
26592498 TCT
1 TCT
26592501 AGTCTCTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 8 0.36
23 9 0.41
24 5 0.23
ACGTcount: A:0.10, C:0.12, G:0.10, T:0.67
Consensus pattern (22 bp):
TCTTCTTTTGATTGGATTTTTA
Found at i:26599881 original size:63 final size:63
Alignment explanation
Indices: 26599756--26599900 Score: 159
Period size: 63 Copynumber: 2.3 Consensus size: 63
26599746 CCCCATACAC
* * * * ***
26599756 TCATTCCCCGCATCAACACATTTAGCTCCGGTTTATTTTACATAAGCACCACAACGTGCACAA
1 TCATTCCCTGCATCAACACATTGAACTCCGGTTTATTTTACACAAGCACCACAACACACACAA
* * *
26599819 -CTATTTCCTGCATCAACACATTGAACAT-CGGTTTATTTTATACAAGCATCACAACACACACAA
1 TC-ATTCCCTGCATCAACACATTGAAC-TCCGGTTTATTTTACACAAGCACCACAACACACACAA
*
26599882 TCATTCCCTACATCAACAC
1 TCATTCCCTGCATCAACAC
26599901 CTTCTATAGG
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
62 1 0.01
63 64 0.96
64 2 0.03
ACGTcount: A:0.33, C:0.31, G:0.08, T:0.28
Consensus pattern (63 bp):
TCATTCCCTGCATCAACACATTGAACTCCGGTTTATTTTACACAAGCACCACAACACACACAA
Found at i:26601517 original size:44 final size:43
Alignment explanation
Indices: 26601454--26601568 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
26601444 ATGTTTTTTC
** *
26601454 TGTAAGACCACATTTGGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGA-TATATGA-TTACA
* * *
26601498 TGTAAGACCCTGTCTGGGACAG-TGACATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATATATGATTACA
*
26601541 TGTAAGACCATGTCTGGGACGTTAGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
26601569 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 1 0.02
43 29 0.49
44 28 0.47
45 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATATATGATTACA
Found at i:26602110 original size:23 final size:24
Alignment explanation
Indices: 26602084--26602129 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
26602074 AGCCATGTGA
*
26602084 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
*
26602107 TATGGTTTGATTTTGGTATATGA
1 TATGGCTTGATTTTGGTATATGA
26602130 AATGTGATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.52
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:26612060 original size:19 final size:21
Alignment explanation
Indices: 26612010--26612060 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
26612000 AGAAATTTAT
*
26612010 AAAAATACATAAATAATTTCAA
1 AAAAATA-ATAAATAAATTCAA
26612032 AAAAGTATAAT-AATAAATT-AA
1 AAAA--ATAATAAATAAATTCAA
26612053 AAAAATAA
1 AAAAATAA
26612061 ATTAATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 4 0.15
21 6 0.23
22 11 0.42
23 2 0.08
24 3 0.12
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (21 bp):
AAAAATAATAAATAAATTCAA
Found at i:26612083 original size:25 final size:26
Alignment explanation
Indices: 26612039--26612107 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
26612029 CAAAAAAGTA
* *
26612039 TAATAATAA-ATTAAAAAAATA-AAT
1 TAATATTAATATTAAATAAATATAAT
26612063 TAATATTAATATTAAATAAATATAAT
1 TAATATTAATATTAAATAAATATAAT
*
26612089 T-ATATTAATATAAAATAAA
1 TAATATTAATATTAAATAAA
26612108 AATCCTCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 8 0.20
25 28 0.70
26 4 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (26 bp):
TAATATTAATATTAAATAAATATAAT
Found at i:26615227 original size:28 final size:29
Alignment explanation
Indices: 26615186--26615240 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
26615176 CTTTATTCCG
*
26615186 ATTGCACTACGGTG-TCCTCTGTTCTGAC
1 ATTGCACTACGGTGCACCTCTGTTCTGAC
* *
26615214 ATTGTACTTCGGTGCACCTCTGTTCTG
1 ATTGCACTACGGTGCACCTCTGTTCTG
26615241 TTAATGCACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.13, C:0.27, G:0.22, T:0.38
Consensus pattern (29 bp):
ATTGCACTACGGTGCACCTCTGTTCTGAC
Found at i:26615251 original size:29 final size:29
Alignment explanation
Indices: 26615188--26615264 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 29
26615178 TTATTCCGAT
* * *
26615188 TGCACTACGGTG-TCCTCTGTTCTGACAT
1 TGCACTTCGGTGCACCTCTGTTCTGACAA
* **
26615216 TGTACTTCGGTGCACCTCTGTTCTGTTAA
1 TGCACTTCGGTGCACCTCTGTTCTGACAA
* *
26615245 TGCACTTTGGTGCAACTCTG
1 TGCACTTCGGTGCACCTCTG
26615265 CATTTGTTTC
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 10 0.26
29 29 0.74
ACGTcount: A:0.14, C:0.26, G:0.22, T:0.38
Consensus pattern (29 bp):
TGCACTTCGGTGCACCTCTGTTCTGACAA
Found at i:26619115 original size:31 final size:31
Alignment explanation
Indices: 26619080--26619142 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
26619070 TTTACACTAC
26619080 CGCATTTCATAGATTATCATGCAATCAATAT
1 CGCATTTCATAGATTATCATGCAATCAATAT
*
26619111 CGCATTTCATGGATTATCATGCAATCAATAT
1 CGCATTTCATAGATTATCATGCAATCAATAT
26619142 C
1 C
26619143 TAGATTAACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (31 bp):
CGCATTTCATAGATTATCATGCAATCAATAT
Found at i:26622482 original size:13 final size:14
Alignment explanation
Indices: 26622466--26622501 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
26622456 CAATCTCATA
26622466 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
26622479 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
26622492 TCTC-ATTTCA
1 TCTCAATTTCA
26622502 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:26622491 original size:18 final size:19
Alignment explanation
Indices: 26622453--26622493 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
26622443 TGGTTCATGT
26622453 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
26622472 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
26622490 TTTC
1 TTTC
26622494 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:26622707 original size:23 final size:21
Alignment explanation
Indices: 26622655--26622743 Score: 97
Period size: 21 Copynumber: 4.1 Consensus size: 21
26622645 CCTGATCAGT
* * *
26622655 ATACGACACATAAAGTGCCTA
1 ATACGACACACAAGGTGCCTG
*
26622676 AAACGACACACAAGGTGCCTG
1 ATACGACACACAAGGTGCCTG
*
26622697 ATACGACACACGAGGTGCCTG
1 ATACGACACACAAGGTGCCTG
* *
26622718 AAATACGACACATAAAGTGCCTG
1 --ATACGACACACAAGGTGCCTG
26622741 ATA
1 ATA
26622744 GATAAAGCCG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
21 39 0.68
23 18 0.32
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (21 bp):
ATACGACACACAAGGTGCCTG
Found at i:26622741 original size:44 final size:42
Alignment explanation
Indices: 26622655--26622743 Score: 115
Period size: 44 Copynumber: 2.1 Consensus size: 42
26622645 CCTGATCAGT
* *
26622655 ATACGACACATAAAGTGCCTAAAACGACACACAAGGTGCCTG
1 ATACGACACACAAAGTGCCTAAAACGACACACAAAGTGCCTG
* * *
26622697 ATACGACACACGAGGTGCCTGAAATACGACACATAAAGTGCCTG
1 ATACGACACACAAAGTGCCT-AAA-ACGACACACAAAGTGCCTG
26622741 ATA
1 ATA
26622744 GATAAAGCCG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 17 0.43
43 3 0.08
44 20 0.50
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (42 bp):
ATACGACACACAAAGTGCCTAAAACGACACACAAAGTGCCTG
Found at i:26623137 original size:15 final size:15
Alignment explanation
Indices: 26623112--26623169 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
26623102 TCATGTATAT
26623112 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
26623128 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
26623143 AATAATTTCAATCAA
1 TATAAATTCAATCAA
26623158 TATAAATTCAAT
1 TATAAATTCAAT
26623170 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:26627475 original size:51 final size:51
Alignment explanation
Indices: 26627398--26627679 Score: 232
Period size: 51 Copynumber: 5.8 Consensus size: 51
26627388 AGGACTCGTT
* * * * *
26627398 GCTTTAATCTGCTCCGCTGCAACTTCAGGGAGATAAAATTTGTAACTTATA
1 GCTTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGTAACTTATA
* * *
26627449 GCTTTAATTTGTTCCATTGTAACTTCAAGGAAATAAGATTTG-------TA
1 GCTTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGTAACTTATA
* ** * *
26627493 GCTTTAATCTGCTCCACTGCT-TTTTCAGGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGTTCCACTG-TAACTTCAGGGAAATAAGATTTGTAACTTATA
* * *
26627544 GCTTTAATCTGTTCAACTGCAACTTCAGGGAAATAAGATTCG---C-TAT-
1 GCTTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGTAACTTATA
* * * * * *
26627590 -CTTCAATTTGCTCCACTGTAATTTCAGGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGTAACTTATA
* * *
26627640 GCTTTAATCTGTTCCATTGCAACTTTAGGGAAATAAGATT
1 GCTTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATT
26627680 CACTCTCTTC
Statistics
Matches: 176, Mismatches: 40, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
44 35 0.20
45 34 0.19
47 2 0.01
48 2 0.01
49 2 0.01
51 101 0.57
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (51 bp):
GCTTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGTAACTTATA
Found at i:26627520 original size:95 final size:95
Alignment explanation
Indices: 26627398--26627921 Score: 483
Period size: 96 Copynumber: 5.5 Consensus size: 95
26627388 AGGACTCGTT
* * * * *
26627398 GCTTTAATCTGCTCCGCTGCAACTTCAGGGAGATAAAATTTGTAACTTATAGCTTTAATTTGTTC
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTC
* * *
26627463 CATTGTAACTTCAAGGAAATAAGATTTGTA
66 CATTGCAACTTCAGGGAAATAAGATTAGTA
* ***
26627493 GCTTTAATCTGCTCCACTGCTTTTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTC
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTC
* * *
26627558 AACTGCAACTTCAGGGAAATAAGATTCGCTA
66 CATTGCAACTTCAGGGAAATAAGATTAG-TA
* * * *
26627589 TCTTCAATTTGCTCCACTGTAATTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTC
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTC
* * *
26627654 CATTGCAACTTTAGGGAAATAAGATTCACTC
66 CATTGCAACTTCAGGGAAATAAGATT-AGTA
* * * **
26627685 TCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-T--C---TATCTTTAACCTACTC
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTC
** *
26627744 CGCTGCAACTTCA-GGAAATAAGATTTGTCA
66 CATTGCAACTTCAGGGAAATAAGATTAGT-A
* * * * *
26627774 TGGTGACTCCAATCCG-TCCTATTGCAACTTCAGGG-GTTTAGGATTTGTAACTTGTAGCTTTAA
1 ----G-CTTCAATCTGCTCC-ACTGCAACTTCAGGGAG-ATAAGATTTGTAACTTGTAGCTTTAA
* * * * * *
26627837 TCTATTCCACTGCAACTTTAAGGAAATAGGATTCA-CA
59 TCTGTTCCATTGCAACTTCAGGGAAATAAGATT-AGTA
* * *
26627874 TCCTCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTGTAACTT
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTT
26627922 CAATCTACTT
Statistics
Matches: 350, Mismatches: 59, Indels: 40
0.78 0.13 0.09
Matches are distributed among these distances:
88 1 0.00
89 12 0.03
90 22 0.06
93 5 0.01
94 29 0.08
95 117 0.33
96 127 0.36
97 1 0.00
100 25 0.07
101 11 0.03
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (95 bp):
GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTC
CATTGCAACTTCAGGGAAATAAGATTAGTA
Found at i:26627635 original size:96 final size:95
Alignment explanation
Indices: 26627403--26628452 Score: 566
Period size: 89 Copynumber: 11.4 Consensus size: 95
26627393 TCGTTGCTTT
* * * * *
26627403 AATCTGCTCCGCTGCAACTTCAGGGAGATAAAATTTGTAACTTATAGCTTTAATTTGTTCCATTG
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTT-TAGCTTTAATCTGTTCCACTG
* * *
26627468 TAACTTCAAGGAAATAAGATTTG-TAGCTTT
65 CAACTTCAAGGAAATAAGATTTGCTATCTTC
** *
26627498 AATCTGCTCCACTGCT-TTTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCAACT
1 AATCTGCTCCACTG-TAACTTCAGGGAGATAAGATTTGTAACTT-TAGCTTTAATCTGTTCCACT
* *
26627562 GCAACTTCAGGGAAATAAGATTCGCTATCTTC
64 GCAACTTCAAGGAAATAAGATTTGCTATCTTC
* * *
26627594 AATTTGCTCCACTGTAATTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCATTG
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTT-TAGCTTTAATCTGTTCCACTG
* * ** *
26627659 CAACTTTAGGGAAATAAGATTCACTCTCTTC
65 CAACTTCAAGGAAATAAGATTTGCTATCTTC
* * * ** *
26627690 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-T--C--TATCTTTAACCTACTCCGCTGC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTTAGCTTTAATCTGTTCCACTGC
* *
26627750 AACTTC-AGGAAATAAGATTTGTCATGGTGACTCC
66 AACTTCAAGGAAATAAGATTTG-C-T-AT--CTTC
* * * * * *
26627784 AATCCG-TCCTATTGCAACTTCAGGG-GTTTAGGATTTGTAACTTGTAGCTTTAATCTATTCCAC
1 AATCTGCTCC-ACTGTAACTTCAGGGAG-ATAAGATTTGTAACTT-TAGCTTTAATCTGTTCCAC
* * ** *
26627847 TGCAACTTTAAGGAAATAGGATTCAC-ATCCTC
63 TGCAACTTCAAGGAAATAAGATTTGCTATCTTC
* * *
26627879 AATCTGCTCCACT-TCAACTTCAGGGAGATAAGATTTGTAACTTCA-ATCT-A-CT-TT--ACTG
1 AATCTGCTCCACTGT-AACTTCAGGGAGATAAGATTTGTAACTTTAGCTTTAATCTGTTCCACTG
** * *
26627937 CAACTTCAATAAAATAAGATTTG-TAACTTT
65 CAACTTCAAGGAAATAAGATTTGCTATCTTC
* * * * * * * *
26627967 AATATACTCTACTATAACTTCAGTGAGATAAGA-TT-T-A---TAGCTTTAATCTGCTCTACTAC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTTAGCTTTAATCTGTTCCACTGC
*
26628026 AACTTC-AGAGAGATAAGATTTGCTATCTTC
66 AACTTCAAG-GAAATAAGATTTGCTATCTTC
* * * * * **
26628056 AATTTGCTCCACTGTAACTTCATGGAGATAAGATCTATAA-TTT--C---AATCTGCTCCACTAT
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTTAGCTTTAATCTGTTCCACTGC
* * * * *
26628115 AACTTCAGGGAGATAAG-TTTAC-AACTTT
66 AACTTCAAGGAAATAAGATTTGCTATCTTC
* * * * ** **
26628143 AATCTACTCTAATGTAACTTC-GGAGAGATAAGATTTG---C--TATCTTCGATCTACTCCACTG
1 AATCTGCTCCACTGTAACTTCAGG-GAGATAAGATTTGTAACTTTAGCTTTAATCTGTTCCACTG
* * * * * *
26628202 CAACTTCAGGGAGATAAGGTTT-ATAGCTTT
65 CAACTTCAAGGAAATAAGATTTGCTATCTTC
* ** ** * * * * *
26628232 AATCTGCTCTACTACAACTTCAAAGATATAAGATTTG---C--TATCTTCAATCTGCTCCACTAC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTTAGCTTTAATCTGTTCCACTGC
* * *
26628292 AACTTCATA-GAGATAATATTTG-TGA-CTTT
66 AACTTCA-AGGAAATAAGATTTGCT-ATCTTC
* * * * * * * *
26628321 AATATGCTCCACTGTAACTTCAAGGAGATAAGATTT-T-CCATAATAACTTCAATCCGTCCCACT
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAAC-T-TTAGCTTTAATCTGTTCCACT
* ** ** *
26628384 GCAACTTCATGGGTATGGGATTTG-TAACTTC
64 GCAACTTCAAGGAAATAAGATTTGCTATCTTC
* *
26628415 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGT
26628453 TATTTTTAAC
Statistics
Matches: 754, Mismatches: 143, Indels: 116
0.74 0.14 0.11
Matches are distributed among these distances:
82 1 0.00
83 3 0.00
84 1 0.00
85 4 0.01
86 3 0.00
87 35 0.05
88 104 0.14
89 181 0.24
90 28 0.04
91 4 0.01
92 4 0.01
93 8 0.01
94 99 0.13
95 112 0.15
96 129 0.17
97 2 0.00
100 24 0.03
101 12 0.02
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (95 bp):
AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTTAGCTTTAATCTGTTCCACTGC
AACTTCAAGGAAATAAGATTTGCTATCTTC
Found at i:26627709 original size:45 final size:45
Alignment explanation
Indices: 26627549--26628491 Score: 297
Period size: 44 Copynumber: 20.7 Consensus size: 45
26627539 TTGTAGCTTT
* * *
26627549 AATCTGTTCAACTGCAACTTCAGGGAAATAAGATTCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* * * * * * *
26627594 AATTTGCTCCACTGTAATTTCAGGGAGATAAGATTTGTAACTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGA--T-TCAC---TATCTTC
* * * *
26627645 AATCTGTTCCATTGCAACTTTAGGGAAATAAGATTCACTCTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* ** *
26627690 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* * * * *
26627735 AACCTACTCCGCTGCAACTTCA-GGAAATAAGATTTGTCA-TGGTGACTCC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGA--T-TCACT-AT--CTTC
* * *** * * * *
26627784 AATCCG-TCCTATTGCAACTTCAGGGGTTTAGGATTTGTAACTTGTAGCTTT
1 AATCTGCTCC-ACTGCAACTTCAGGGAAATAAGA--T-TCAC---TATCTTC
** * * * *
26627835 AATCTATTCCACTGCAACTTTAAGGAAATAGGATTCAC-ATCCTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* * ** *
26627879 AATCTGCTCCACTTCAACTTCAGGGAGATAAGATT-TGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* ** *** ** * *
26627923 AATCTACTTTACTGCAACTTCAATAAAATAAGATT-TGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* * * ** * * * * *
26627967 AATATACTCTACTATAACTTCAGTGAGATAAGATTTA-TAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* * * * **
26628011 AATCTGCTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* * * *
26628056 AATTTGCTCCACTGTAACTTCATGGAGATAAGA-TCTA-TAAT-TTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTC-ACT-ATCTTC
** * * * *
26628100 AATCTGCTCCACTATAACTTCAGGGAGATAAG-TTTAC-AACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* * * * * **
26628143 AATCTACTCTAATGTAACTTC-GGAGAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGG-GAAATAAGATTCACTATCTTC
* * * * * * *
26628188 GATCTACTCCACTGCAACTTCAGGGAGATAAGGTTTA-TAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* * ** * **
26628232 AATCTGCTCTACTACAACTTCAAAGATATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* ** * * ** *
26628277 AATCTGCTCCACTACAACTTCATAGAGATAATATT-TGTGA-CTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACT-ATCTTC
* * * *
26628321 AATATGCTCCACTGTAACTTCAAGGAGATAAGATTTTC-CATAATAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGA--TTCAC-T-AT--CTTC
* * ** ** *
26628371 AATCCG-TCCCACTGCAACTTCATGGG-TATGGGATT-TGTAACTTC
1 AATCTGCT-CCACTGCAACTTCA-GGGAAATAAGATTCACTATCTTC
* * *** * *
26628415 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTTATTTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
* * * *
26628460 AACCTGCTTCACTGCAACTTCGGGGAGATAAG
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAG
26628492 GTTTGCCATA
Statistics
Matches: 673, Mismatches: 179, Indels: 92
0.71 0.19 0.10
Matches are distributed among these distances:
42 3 0.00
43 31 0.05
44 276 0.41
45 223 0.33
46 7 0.01
47 6 0.01
48 13 0.02
49 18 0.03
50 36 0.05
51 56 0.08
52 3 0.00
54 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.34
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTC
Found at i:26627925 original size:44 final size:44
Alignment explanation
Indices: 26627877--26628496 Score: 394
Period size: 44 Copynumber: 13.9 Consensus size: 44
26627867 ATTCACATCC
26627877 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTGTAACT
1 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTGTAACT
* ** * *** *
26627921 TCAATCTACTTTACTGCAACTTCAATAAAATAAGATTTGTAACT
1 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTGTAACT
* * * * * * *
26627965 TTAATATACTCTACTAT-AACTTCAGTGAGATAAGATTTATAGCT
1 TCAATCTGCTCCACT-TCAACTTCAGGGAGATAAGATTTGTAACT
* * * * *
26628009 TTAATCTGCTCTACTACAACTTCAGAGAGATAAGATTTGCTATCT
1 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTG-TAACT
* * * * *
26628054 TCAATTTGCTCCACTGT-AACTTCATGGAGATAAGATCTATAATT
1 TCAATCTGCTCCACT-TCAACTTCAGGGAGATAAGATTTGTAACT
**
26628098 TCAATCTGCTCCACTAT-AACTTCAGGGAGATAAG-TTTACAACT
1 TCAATCTGCTCCACT-TCAACTTCAGGGAGATAAGATTTGTAACT
* * * * *
26628141 TTAATCTACTCTAATGT-AACTTC-GGAGAGATAAGATTTGCTATCT
1 TCAATCTGCTCCACT-TCAACTTCAGG-GAGATAAGATTTG-TAACT
* * * * * *
26628186 TCGATCTACTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCT
1 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTGTAACT
* * * ** * *
26628230 TTAATCTGCTCTACTACAACTTCAAAGATATAAGATTTGCTATCT
1 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTG-TAACT
* ** * *
26628275 TCAATCTGCTCCACTACAACTTCATAGAGATAATATTTGTGACT
1 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTGTAACT
* * * *
26628319 TTAATATGCTCCACTGT-AACTTCAAGGAGATAAGATTTTCCATAATAACT
1 TCAATCTGCTCCACT-TCAACTTCAGGGAGATAAGA--TT---T-GTAACT
* * * **
26628369 TCAATCCG-TCCCACTGCAACTTCATGGG-TATGGGATTTGTAACT
1 TCAATCTGCT-CCACTTCAACTTCA-GGGAGATAAGATTTGTAACT
* * **
26628413 TCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTTATTT
1 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTG-TAACT
* * * * * *
26628458 TTAACCTGCTTCACTGCAACTTCGGGGAGATAAGGTTTG
1 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTG
26628497 CCATAATGAT
Statistics
Matches: 450, Mismatches: 103, Indels: 45
0.75 0.17 0.08
Matches are distributed among these distances:
42 2 0.00
43 35 0.08
44 237 0.53
45 141 0.31
46 4 0.01
48 2 0.00
49 2 0.00
50 25 0.06
51 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (44 bp):
TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTGTAACT
Found at i:26628029 original size:132 final size:133
Alignment explanation
Indices: 26627879--26628356 Score: 480
Period size: 132 Copynumber: 3.6 Consensus size: 133
26627869 TCACATCCTC
* * **
26627879 AATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTG-TAACTTCAATCTACTTTACTGCAACTT
1 AATCTGCTCCACTACAACTTCAGAGAGATAAGATTTGCTAACTTCAATCTACTCCACTGCAACTT
* * * * * * *
26627943 CAATAAAATAAGATTTGTAACTTTAATATACTCTACTATAACTTCAGTGAGATAAGATTTATAGC
66 CAATGAGATAAGATTTATAACTTTAATCTGCTCTACTATAACTTCAGAGAGATAAGATTTATAAC
26628008 TTT
131 TTT
* * * * *
26628011 AATCTGCTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATTTGCTCCACTGTAACTT
1 AATCTGCTCCACTACAACTTCAGAGAGATAAGATTTGCTAACTTCAATCTACTCCACTGCAACTT
* * * *
26628076 C-ATGGAGATAAGATCTATAA-TTTCAATCTGCTCCACTATAACTTCAGGGAGATAAG-TTTACA
66 CAAT-GAGATAAGATTTATAACTTT-AATCTGCTCTACTATAACTTCAGAGAGATAAGATTTATA
26628138 ACTTT
129 ACTTT
* * * ** * * *
26628143 AATCTACTCTAATGTAACTTCGGAGAGATAAGATTTGCTATCTTCGATCTACTCCACTGCAACTT
1 AATCTGCTCCACTACAACTTCAGAGAGATAAGATTTGCTAACTTCAATCTACTCCACTGCAACTT
** * * * * * * *
26628208 CAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTACAACTTCAAAGATATAAGATTTGCTAT
66 CAATGAGATAAGATTTATAACTTTAATCTGCTCTACTATAACTTCAGAGAGATAAGATTT-ATAA
*
26628273 CTTC
130 CTTT
* * * * * * *
26628277 AATCTGCTCCACTACAACTTCATAGAGATAATATTTG-TGACTTTAATATGCTCCACTGTAACTT
1 AATCTGCTCCACTACAACTTCAGAGAGATAAGATTTGCTAACTTCAATCTACTCCACTGCAACTT
*
26628341 CAAGGAGATAAGATTT
66 CAATGAGATAAGATTT
26628357 TCCATAATAA
Statistics
Matches: 280, Mismatches: 59, Indels: 13
0.80 0.17 0.04
Matches are distributed among these distances:
132 145 0.52
133 102 0.36
134 33 0.12
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (133 bp):
AATCTGCTCCACTACAACTTCAGAGAGATAAGATTTGCTAACTTCAATCTACTCCACTGCAACTT
CAATGAGATAAGATTTATAACTTTAATCTGCTCTACTATAACTTCAGAGAGATAAGATTTATAAC
TTT
Found at i:26628227 original size:221 final size:221
Alignment explanation
Indices: 26627877--26628356 Score: 617
Period size: 221 Copynumber: 2.2 Consensus size: 221
26627867 ATTCACATCC
** * *
26627877 TCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTGTAACTTCAATCTACTTTACTGCAACT
1 TCAATCTGCTCCACTT-AACTTCAGGGAGATAAGATTTACAACTTCAATCTACTCTAATGCAACT
* * * *
26627942 TCAATAAAATAAGATTTGTAACTTTAATATACTCTACTATAACTTCAGTGAGATAAGATTTATAG
65 TCAATAAAATAAGATTTGTAACTTCAATATACTCCACTACAACTTCAGGGAGATAAGATTTATAG
* * **
26628007 CTTTAATCTGCTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATTTGCTCCACTGTA
130 CTTTAATCTGCTCTACTACAACTTCAAAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTACA
*
26628072 ACTTCATGGAGATAAGATCTAT-AATT
195 ACTTCATAGAGATAAGATCTATGAATT
* *
26628098 TCAATCTGCTCCACTATAACTTCAGGGAGATAAG-TTTACAACTTTAATCTACTCTAATGTAACT
1 TCAATCTGCTCCACT-TAACTTCAGGGAGATAAGATTTACAACTTCAATCTACTCTAATGCAACT
* * * * * * * *
26628162 TCGGA-GAGATAAGATTTGCTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGGTTTAT
65 TC-AATAAAATAAGATTTG-TAACTTCAATATACTCCACTACAACTTCAGGGAGATAAGATTTAT
*
26628226 AGCTTTAATCTGCTCTACTACAACTTCAAAGATATAAGATTTGCTATCTTCAATCTGCTCCACTA
128 AGCTTTAATCTGCTCTACTACAACTTCAAAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTA
* * * *
26628291 CAACTTCATAGAGATAATATTTGTGACTT
193 CAACTTCATAGAGATAAGATCTATGAATT
* *
26628320 T-AATATGCTCCACTGTAACTTCAAGGAGATAAGATTT
1 TCAATCTGCTCCACT-TAACTTCAGGGAGATAAGATTT
26628357 TCCATAATAA
Statistics
Matches: 223, Mismatches: 31, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
220 37 0.17
221 178 0.80
222 8 0.04
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (221 bp):
TCAATCTGCTCCACTTAACTTCAGGGAGATAAGATTTACAACTTCAATCTACTCTAATGCAACTT
CAATAAAATAAGATTTGTAACTTCAATATACTCCACTACAACTTCAGGGAGATAAGATTTATAGC
TTTAATCTGCTCTACTACAACTTCAAAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTACAA
CTTCATAGAGATAAGATCTATGAATT
Found at i:26628501 original size:139 final size:138
Alignment explanation
Indices: 26628258--26628547 Score: 355
Period size: 139 Copynumber: 2.1 Consensus size: 138
26628248 ACTTCAAAGA
* * * * *
26628258 TATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCATAGAGATAATATTTGTGACTTTAA
1 TATAGGATTTG-TAACTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTGTGACTTTAA
* * * *
26628323 TATGCTCCACTGTAACTTCAAGGAGATAAGATTTTCCATAATAACTTCAATCCGTCCCACTGCAA
65 CATGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATAATAACTTCAATCCATCCCACTGCAA
*
26628388 CTTCATGGG
130 CTTCAGGGG
* * * * *
26628397 TATGGGATTTGTAACTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTTATTTTTAA
1 TATAGGATTTGTAACTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTGTGA-CTTTAA
* * ** * * * *
26628462 CCTGCTTCACTGCAACTTCGGGGAGATAAGGTTTGCCATAATGATTTCAATCTATCCCACTGCAA
65 CATGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATAATAACTTCAATCCATCCCACTGCAA
26628527 CTTCAGGGG
130 CTTCAGGGG
26628536 TATAGGATTTGT
1 TATAGGATTTGT
26628548 GATTTTTTTG
Statistics
Matches: 126, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
138 40 0.32
139 86 0.68
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (138 bp):
TATAGGATTTGTAACTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTGTGACTTTAAC
ATGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATAATAACTTCAATCCATCCCACTGCAAC
TTCAGGGG
Found at i:26633951 original size:2 final size:2
Alignment explanation
Indices: 26633944--26633978 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26633934 ATGATTTGTG
26633944 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26633979 AAAGTTAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26637611 original size:4 final size:4
Alignment explanation
Indices: 26637602--26637643 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
26637592 ACAAAAATAA
* * *
26637602 AAAT AAAT AAGT -AAT AAAT AAAG GAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
26637644 ATTTTGTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
3 2 0.06
4 29 0.94
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:26639770 original size:4 final size:4
Alignment explanation
Indices: 26639757--26639793 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
26639747 TGGTTTTTTG
*
26639757 AATT -ATT AATT AATT CATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT AA
26639794 ATTTTGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (4 bp):
AATT
Found at i:26641508 original size:42 final size:42
Alignment explanation
Indices: 26641454--26641551 Score: 101
Period size: 42 Copynumber: 2.3 Consensus size: 42
26641444 TTCCATTTAG
*
26641454 CTCTCACGAGCTTCAGTTTAA-CTCATAT-GAGTTTCCGTTCAA
1 CTCTTACGAGCTTCAGTTTAACCT-ATATAG-GTTTCCGTTCAA
** ** * *
26641496 CTCTTTTGAGCTTTTGTTTAACCTTTATAGGTTTCCGTTCAG
1 CTCTTACGAGCTTCAGTTTAACCTATATAGGTTTCCGTTCAA
26641538 CTCTTACGAGCTTC
1 CTCTTACGAGCTTC
26641552 CATTCAACCA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
42 41 0.93
43 3 0.07
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.42
Consensus pattern (42 bp):
CTCTTACGAGCTTCAGTTTAACCTATATAGGTTTCCGTTCAA
Found at i:26644771 original size:20 final size:21
Alignment explanation
Indices: 26644740--26644783 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
26644730 AAATCAGTAA
26644740 AAAATATTATTCCTAA-AAAAT
1 AAAATATTATT-CTAAGAAAAT
26644761 AAAAT-TTATTCTAAGAAAAT
1 AAAATATTATTCTAAGAAAAT
26644781 AAA
1 AAA
26644784 TTTCCACTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.18
20 13 0.59
21 5 0.23
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (21 bp):
AAAATATTATTCTAAGAAAAT
Found at i:26646436 original size:31 final size:31
Alignment explanation
Indices: 26646401--26646460 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
26646391 TTTAATTTGA
** * *
26646401 TCAATTTTAGTTTTTATAGTTTTTGAATTGG
1 TCAATTTTAGCCTGTATAATTTTTGAATTGG
26646432 TCAATTTTAGCCTGTATAATTTTTGAATT
1 TCAATTTTAGCCTGTATAATTTTTGAATT
26646461 TTGAAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.25, C:0.07, G:0.13, T:0.55
Consensus pattern (31 bp):
TCAATTTTAGCCTGTATAATTTTTGAATTGG
Found at i:26655914 original size:328 final size:321
Alignment explanation
Indices: 26655324--26655976 Score: 1117
Period size: 328 Copynumber: 2.0 Consensus size: 321
26655314 ATGTAAAAGG
*
26655324 TTTTTTCTGATGCAATCAATCATTATAAGCACTAAACTAAATAACTAACTATAACTAAAAGAACC
1 TTTTTTCCGATGCAATCAATCATTATAAGCACTAAACTAAATAACTAACTATAACTAAAAGAACC
*
26655389 CATGCATTTACATAAGGTGAGACTCAAATCGCAAAGTCTCTAGGGCCTCAATCTTGCCATTGAGC
66 CATGCATTTACATAAGATGAGACTCAAATCGCAAAGTCTCTAGGGCCTCAATCTTGCCATTGAGC
*
26655454 CAAGGCCTCATTGGTGTAAATGATAAATGCTAGTGATTTTGTTTTTGTTTGAAAAGCTAGAAAAA
131 CAAGGCCTCATTGGTGTAAACGATAAATGCTAGTGATTTTGTTTTTGTTTGAAAAGCTAGAAAAA
* *
26655519 GAGTGCAAACCTCAAAACCACATAGAGAACAATGAGAGATATTATCATCCTCTTTAACATCAGGT
196 GAGTGCAAACCTCAAAACCACATAGAGAACAATAAGAGATATTATCATCCTCCTTAACATCAGGT
26655584 GAAACTACATCATCTTTCATGACAAGGGGAAATGGTAACAATGGTTCCATTTGGAAATTGA
261 GAAACTACATCATCTTTCATGACAAGGGGAAATGGTAACAATGGTTCCATTTGGAAATTGA
*
26655645 TTTTTTCCGATGCAATCAATCATTATAAGCACTAAACTAAATAATTAACTATAACTAAAAGAACC
1 TTTTTTCCGATGCAATCAATCATTATAAGCACTAAACTAAATAACTAACTATAACTAAAAGAACC
* *
26655710 CATGCATTTACATACATAAGATGAGACTCAAATCTCAAAGTCTGTAGGGCCTCAATCTTGCCATT
66 CATGCA-TT---TACATAAGATGAGACTCAAATCGCAAAGTCTCTAGGGCCTCAATCTTGCCATT
* *
26655775 GAGCCAAGGCCTCATTGGTGTAAACGATAAATGCAAGTAGTGATTTTGTTTTTGTTTGGACAGCT
127 GAGCCAAGGCCTCATTGGTGTAAACGATAAATGC---TAGTGATTTTGTTTTTGTTTGAAAAGCT
*
26655840 AGAAAAAGAGTGCAAACCTCAAAATCACATAGAGAACAATAAGAGATATTATCATCCTCCTTAAC
189 AGAAAAAGAGTGCAAACCTCAAAACCACATAGAGAACAATAAGAGATATTATCATCCTCCTTAAC
* *
26655905 ATCAGGTGAAACTGCATCATCTTTCATGACAAGGGGAAATGGTAACAATGTTTCCATTTGGAAAT
254 ATCAGGTGAAACTACATCATCTTTCATGACAAGGGGAAATGGTAACAATGGTTCCATTTGGAAAT
*
26655970 TGG
319 TGA
26655973 TTTT
1 TTTT
26655977 CCATGGATCT
Statistics
Matches: 311, Mismatches: 14, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
321 69 0.22
322 2 0.01
325 83 0.27
328 157 0.50
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (321 bp):
TTTTTTCCGATGCAATCAATCATTATAAGCACTAAACTAAATAACTAACTATAACTAAAAGAACC
CATGCATTTACATAAGATGAGACTCAAATCGCAAAGTCTCTAGGGCCTCAATCTTGCCATTGAGC
CAAGGCCTCATTGGTGTAAACGATAAATGCTAGTGATTTTGTTTTTGTTTGAAAAGCTAGAAAAA
GAGTGCAAACCTCAAAACCACATAGAGAACAATAAGAGATATTATCATCCTCCTTAACATCAGGT
GAAACTACATCATCTTTCATGACAAGGGGAAATGGTAACAATGGTTCCATTTGGAAATTGA
Found at i:26664170 original size:25 final size:25
Alignment explanation
Indices: 26664123--26664170 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
26664113 TTATAATATG
* * * *
26664123 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCATAGGTA
26664148 AAAATGACCATTATACCCATAGG
1 AAAATGACCATTATACCCATAGG
26664171 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCATAGGTA
Found at i:26664273 original size:20 final size:20
Alignment explanation
Indices: 26664207--26664273 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
26664197 ATTTTGATAA
* *
26664207 ACATGGTATGTATGGTATGC
1 ACATGATATGTATGATATGC
* *
26664227 ATATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
26664247 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
26664267 ACATGAT
1 ACATGAT
26664274 GTATTCGTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:26664381 original size:24 final size:24
Alignment explanation
Indices: 26664322--26664428 Score: 171
Period size: 24 Copynumber: 4.4 Consensus size: 24
26664312 GGAGGAAGTG
26664322 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
26664346 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
26664371 TAAAAGGGCTTATGCCCCAATTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
26664395 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
26664418 TAAAAGAGGCT
1 TAAAAG-GGCT
26664429 AGGCCTCTAG
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
23 17 0.22
24 37 0.48
25 23 0.30
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:26664671 original size:31 final size:31
Alignment explanation
Indices: 26664636--26664699 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
26664626 CGTTTACAGT
26664636 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
26664667 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26664698 AA
1 AA
26664700 TATGAAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:26666489 original size:5 final size:6
Alignment explanation
Indices: 26666475--26666558 Score: 80
Period size: 6 Copynumber: 13.5 Consensus size: 6
26666465 GAAGTCTAAG
* * *
26666475 AAAATA AAAATA AAACATTT AAAATA AAAATA GAAACA-A AAAATG AAAATG
1 AAAATA AAAATA AAA-A-TA AAAATA AAAATA -AAA-ATA AAAATA AAAATA
* *
26666526 AAAATA AAAATA AAACTA AAAATG AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
26666559 GAGATAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
5 1 0.02
6 53 0.82
7 6 0.09
8 5 0.08
ACGTcount: A:0.75, C:0.04, G:0.05, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:26668129 original size:17 final size:16
Alignment explanation
Indices: 26668090--26668142 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 16
26668080 AATCAAAATC
*
26668090 AAATCAAATTAAATAAA
1 AAAT-AAATAAAATAAA
26668107 CTAAATAAATAAAAATAAA
1 --AAATAAAT-AAAATAAA
*
26668126 AAATAAGTAAAATAAA
1 AAATAAATAAAATAAA
26668142 A
1 A
26668143 GCAATAAGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 9 0.29
17 7 0.23
18 4 0.13
19 11 0.35
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.21
Consensus pattern (16 bp):
AAATAAATAAAATAAA
Found at i:26672893 original size:22 final size:22
Alignment explanation
Indices: 26672868--26672912 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
26672858 TCTTTTTCCC
26672868 CCCTCCCTTATCTCTTCTTTCT
1 CCCTCCCTTATCTCTTCTTTCT
* * * *
26672890 CCCTTCCTTTTTTTTTCTTTCT
1 CCCTCCCTTATCTCTTCTTTCT
26672912 C
1 C
26672913 TCTTCAAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.02, C:0.40, G:0.00, T:0.58
Consensus pattern (22 bp):
CCCTCCCTTATCTCTTCTTTCT
Found at i:26673247 original size:11 final size:11
Alignment explanation
Indices: 26673223--26673267 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
26673213 TTCTAATACG
*
26673223 TATATATATAT
1 TATATATATTT
*
26673234 TATATGTATTT
1 TATATATATTT
*
26673245 TATATATATTA
1 TATATATATTT
*
26673256 TGTATATATTT
1 TATATATATTT
26673267 T
1 T
26673268 TTTAATGCAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (11 bp):
TATATATATTT
Found at i:26683768 original size:86 final size:87
Alignment explanation
Indices: 26683612--26683861 Score: 225
Period size: 86 Copynumber: 2.9 Consensus size: 87
26683602 CGATTTCCAT
* * ** **
26683612 TTTTCAATTTATGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACG
1 TTTTCAATTTATG-TTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACG
26683677 CTGAGGTATTGTCAATTTTTGTG
65 CTGAGGTATTGTCAATTTTTGTG
* *
26683700 TTTT-AATTTATG-TTTCAAAAAATCAACTCATATTACGATAGGTGAGTTGAGCCTTAAGACACG
1 TTTTCAATTTATGTTTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACG
* * *
26683763 TTGAGGTATTTTCAATTTCTGT-
65 CTGAGGTATTGTCAATTTTTGTG
* *** * *
26683785 CTTTCAA---A----AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC
1 TTTTCAATTTATGTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAG--ACAC
26683843 GCTGAGGTAATT-TCAATTT
64 GCTGAGGT-ATTGTCAATTT
26683862 ATGTTTGTCA
Statistics
Matches: 137, Mismatches: 20, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
79 37 0.27
81 18 0.13
82 3 0.02
83 1 0.01
85 7 0.05
86 59 0.43
87 8 0.06
88 4 0.03
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (87 bp):
TTTTCAATTTATGTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGC
TGAGGTATTGTCAATTTTTGTG
Found at i:26683992 original size:71 final size:73
Alignment explanation
Indices: 26683700--26684004 Score: 388
Period size: 71 Copynumber: 4.1 Consensus size: 73
26683690 AATTTTTGTG
* * *
26683700 TTTT-AATTTATG-TTTCAAAAAATCAACTCATATTACGATAGGTGAGTTGAGCCTTAAGACACG
1 TTTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
26683763 TTGAGGTA
66 CTGAGGTA
* *
26683771 TTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TTTTCAATTTATGT-TTTC-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
26683836 GTCACACGCTGAGGTA
60 G--ACACGCTGAGGTA
* * *
26683852 ATTTCAATTTATGTTTGTC-AAAAATCAAC-CATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
1 TTTTCAATTTATGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
26683915 GCTGAGGTA
65 GCTGAGGTA
*
26683924 TTTTCAATTTAT-TTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACG
1 TTTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
26683987 TTGAGGTA
66 CTGAGGTA
26683995 TTTTCAATTT
1 TTTTCAATTT
26684005 CTGCTCACAT
Statistics
Matches: 208, Mismatches: 14, Indels: 24
0.85 0.06 0.10
Matches are distributed among these distances:
70 12 0.06
71 56 0.27
72 30 0.14
74 34 0.16
75 10 0.05
79 38 0.18
80 2 0.01
81 26 0.12
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (73 bp):
TTTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
CTGAGGTA
Found at i:26684025 original size:58 final size:59
Alignment explanation
Indices: 26683950--26684066 Score: 182
Period size: 58 Copynumber: 2.0 Consensus size: 59
26683940 CAAAAATCAA
* **
26683950 CTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGT-ATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACACTGAGGTAATTTTCAATTTCTG
* *
26684008 CTCACATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACACTGAGGTAATTTTCAATTTCTG
26684067 TTGTTAAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 39 0.74
59 14 0.26
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (59 bp):
CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACACTGAGGTAATTTTCAATTTCTG
Found at i:26689515 original size:86 final size:87
Alignment explanation
Indices: 26689359--26689609 Score: 225
Period size: 86 Copynumber: 2.9 Consensus size: 87
26689349 CGATTTCCAT
* * ** **
26689359 TTTTCAATTTATGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACG
1 TTTTCAATTTATG-TTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACG
26689424 CTGAGGTATTGTCAATTTTTGTG
65 CTGAGGTATTGTCAATTTTTGTG
* *
26689447 TTTT-AATTTATG-TTTCAAAAAATCAACTCATATTACGATAGGTGAGTTGAGCCTTAAGACACG
1 TTTTCAATTTATGTTTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACG
* * *
26689510 TTGAGGTATTTTCAATTTCTGT-
65 CTGAGGTATTGTCAATTTTTGTG
* **** * *
26689532 CTTTCAA---A---AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC
1 TTTTCAATTTATGTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAG--ACAC
26689591 GCTGAGGTAATT-TCAATTT
64 GCTGAGGT-ATTGTCAATTT
26689610 ATGTTTGTCA
Statistics
Matches: 137, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
80 37 0.27
82 18 0.13
83 4 0.03
85 7 0.05
86 59 0.43
87 8 0.06
88 4 0.03
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (87 bp):
TTTTCAATTTATGTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGC
TGAGGTATTGTCAATTTTTGTG
Found at i:26689741 original size:71 final size:73
Alignment explanation
Indices: 26689544--26689753 Score: 343
Period size: 71 Copynumber: 2.9 Consensus size: 73
26689534 TTCAAAAAAA
*
26689544 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
26689609 TATGTTTGTC
64 TATGTTTGTC
*
26689619 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
26689684 T-TTT-TC
66 TGTTTGTC
* * *
26689690 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
26689754 CTGCTCACAT
Statistics
Matches: 129, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
71 62 0.48
72 3 0.02
73 23 0.18
75 41 0.32
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
TGTTTGTC
Found at i:26689774 original size:58 final size:60
Alignment explanation
Indices: 26689699--26689816 Score: 177
Period size: 58 Copynumber: 2.0 Consensus size: 60
26689689 CAAAAATCAA
* **
26689699 CTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACAC-GTTGAGGT-ATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACAACTGAGGTAATTTTCAATTTCTG
* *
26689757 CTCACATTGCGAGAGGTGAGTTGAGCCTCAGGACACAACTGAGGTAATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACAACTGAGGTAATTTTCAATTTCTG
26689817 TTGTTAAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
58 33 0.62
59 6 0.11
60 14 0.26
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (60 bp):
CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACAACTGAGGTAATTTTCAATTTCTG
Found at i:26689930 original size:17 final size:17
Alignment explanation
Indices: 26689908--26689944 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
26689898 TTTCAAAATT
26689908 CAACTCATATTGCGAGC
1 CAACTCATATTGCGAGC
26689925 CAACTCATATTGCGAGC
1 CAACTCATATTGCGAGC
26689942 CAA
1 CAA
26689945 AACTGTCGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (17 bp):
CAACTCATATTGCGAGC
Found at i:26695278 original size:86 final size:84
Alignment explanation
Indices: 26695051--26695445 Score: 288
Period size: 86 Copynumber: 4.8 Consensus size: 84
26695041 TGTTCATCAA
* * * * *
26695051 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTAGGTCTCATGACGAGGTATTTACGAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG--ACACGATGAGGTATTT-CAAT
**
26695116 TTCCATTTTTCAATTTATGTTTTTC
63 TTCTGTTTTT-AATTTATG--TTTC
* ** ** *
26695141 -AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACGCTGAGGTATTGTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGATGAGGTATT-TCAATTT
*
26695205 TTGTGTTTTAATTTATGTTTC
65 CTGT-TTTTAATTTATGTTTC
* * *
26695226 AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGATGAGGTA-TTTCAATTT
* ***
26695291 CTGTCTTTCAA---A---AAA
65 CTGT-TTTTAATTTATGTTTC
* *
26695306 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTAATTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG--ACACGATGAGGT-ATTTCAAT
*
26695371 TTATG--------TT-TG--TC
63 TTCTGTTTTTAATTTATGTTTC
* * *
26695382 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGATGAGGTA-TTTCAATTT
26695446 ATTTTTCAAA
Statistics
Matches: 258, Mismatches: 35, Indels: 41
0.77 0.10 0.12
Matches are distributed among these distances:
72 1 0.00
73 20 0.08
75 41 0.16
80 39 0.15
82 22 0.09
83 2 0.01
85 4 0.02
86 61 0.24
87 26 0.10
88 5 0.02
89 37 0.14
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (84 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGATGAGGTATTTCAATTTC
TGTTTTTAATTTATGTTTC
Found at i:26695405 original size:75 final size:71
Alignment explanation
Indices: 26695307--26696780 Score: 761
Period size: 72 Copynumber: 19.5 Consensus size: 71
26695297 TTCAAAAAAA
*
26695307 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
26695372 TATGTTTGTC
64 TAT-TTT-TC
*
26695382 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
26695447 TTTTTC
66 TTTTTC
* * *
26695453 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
* **
26695517 CTGCTC
66 TTTTTC
* ** * * * * * * * * * **
26695523 --ACAT-TGC-GAGA--G-GTGAGTTGAGCCTCAG---GA-CACACTG-AG-GTAATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAG-TTGAGCCTCAGGACAC-GCTGAGGTATTTTCAA-T
* *
26695575 TCTGTTGTTAAAAAAATA
63 T-TATT-TT-------TC
** * *
26695593 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
26695658 TGTTTTC
66 T-TTTTC
* ** * *
26695665 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA--TT
*
26695730 TGTTTTTC
64 TATTTTTC
* *
26695738 AAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
1 -------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
26695803 CAATTTCTGTTTTC
59 CAATTTAT-TTTTC
* * * *
26695817 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGATATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
26695881 TGTGTTTC
66 T-T-TTTC
** * * * ** ** * * ** *
26695889 AATCTATTTTTCAAAAAATCA-ACT-C-ATATTATAAGAAATGAG-TTGAGCCTCAGGAC--ACG
1 AA---A--AATC---AACTCATATTGCGAGA-GGT--GAGTTGAGCCTCAG-GACACG-CTGA-G
* * * *
26695948 CTGAGGTAATTTCAATTTCTGTTTGTC
52 GT-A--T-TTTC-AATTTAT-TTT-TC
* *
26695975 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGTTGAGGTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTATTTTCAATTT
*
26696039 CTGCTTTTC
65 AT--TTTTC
* ** * * * * * *
26696048 AATTTATATTTTTCAA-AAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 AA---A-A---ATCAACTCATATT--GC-GAGA--G-GTGAGTTGAG-----CCTCAGGACACGC
* *
26696112 TGAGGTAATTTTCAATTTCTGTTGTTAAA
48 TGAGGT-ATTTTCAATTTAT-TT-TT--C
** * *
26696141 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
26696206 TGTTTTC
66 T-TTTTC
* ** * *
26696213 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA--TT
*
26696278 TGTTTTTC
64 TATTTTTC
*
26696286 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GAGACACGCTGAGGTAATTT
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACACGCTGAGGTATTTT
*
26696350 CAATTTCTGTTTTC
59 CAATTTAT-TTTTC
* * * *
26696364 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
26696429 TGTTTTC
66 T-TTTTC
* * * * * *
26696436 AAAATTCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGCGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
26696501 TGTTTTC
66 T-TTTTC
** *
26696508 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
*
26696572 TTCTGTCTTTC
63 TTAT-T-TTTC
* *
26696583 AAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTT
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTT
*
26696647 CAATTTCTGTCTTTC
59 CAATTTAT-T-TTTC
* *
26696662 AAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTT
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTT
*
26696726 CAATTTCTGTCTTTC
59 CAATTTAT-T-TTTC
26696741 AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
26696781 TGCAGATCAC
Statistics
Matches: 1135, Mismatches: 153, Indels: 217
0.75 0.10 0.14
Matches are distributed among these distances:
59 9 0.01
60 7 0.01
61 3 0.00
62 1 0.00
63 8 0.01
64 4 0.00
66 2 0.00
67 1 0.00
68 3 0.00
70 4 0.00
71 88 0.08
72 338 0.30
73 46 0.04
74 41 0.04
75 61 0.05
76 24 0.02
77 17 0.01
78 27 0.02
79 227 0.20
80 121 0.11
81 25 0.02
82 4 0.00
83 1 0.00
84 4 0.00
85 12 0.01
86 16 0.01
87 4 0.00
89 4 0.00
90 17 0.01
91 14 0.01
93 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
TTTTTC
Found at i:26695504 original size:71 final size:73
Alignment explanation
Indices: 26695307--26695516 Score: 343
Period size: 71 Copynumber: 2.9 Consensus size: 73
26695297 TTCAAAAAAA
*
26695307 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
26695372 TATGTTTGTC
64 TATGTTTGTC
*
26695382 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
26695447 T-TTT-TC
66 TGTTTGTC
* * *
26695453 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
26695517 CTGCTCACAT
Statistics
Matches: 129, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
71 62 0.48
72 3 0.02
73 23 0.18
75 41 0.32
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
TGTTTGTC
Found at i:26695537 original size:58 final size:59
Alignment explanation
Indices: 26695462--26695578 Score: 182
Period size: 58 Copynumber: 2.0 Consensus size: 59
26695452 CAAAAATCAA
* **
26695462 CTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGT-ATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACACTGAGGTAATTTTCAATTTCTG
* *
26695520 CTCACATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACACTGAGGTAATTTTCAATTTCTG
26695579 TTGTTAAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 39 0.74
59 14 0.26
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (59 bp):
CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACACTGAGGTAATTTTCAATTTCTG
Found at i:26696337 original size:151 final size:148
Alignment explanation
Indices: 26696064--26696780 Score: 948
Period size: 151 Copynumber: 4.8 Consensus size: 148
26696054 TATTTTTCAA
*
26696064 AAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTCAATT
1 AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACATGCTGAGGT-ATTTTCAATT
* **
26696129 TCTGTTGTT--AAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGGACACGCTGA
63 TCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGA-GACACGCTGA
26696191 GGTAATTTCAATTTCTGTTTTC
127 GGTAATTTCAATTTCTGTTTTC
* ** * *
26696213 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACATGCTGAGGTATTTTCAATTTC
26696278 TGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAG
65 TGTTTTTC--AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAG
26696343 GTAATTTCAATTTCTGTTTTC
128 GTAATTTCAATTTCTGTTTTC
* * *
26696364 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACATGCTGAGGTATTTTCAATTTC
* * * *
26696429 TG-TTTTC----AAAATTCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGCGGT
65 TGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGT
26696489 AATTTCAATTTCTGTTTTC
130 AATTTCAATTTCTGTTTTC
**
26696508 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACATGCTGAGGTATTTTCAATT
* * *
26696573 TCTGTCTTTCAAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCG-GTTCACATGCT
63 TCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG---ACACGCT
*
26696637 GAGGTATTTTCAATTTCTGTCTTTC
125 GAGGTAATTTCAATTTCTGT-TTTC
*
26696662 AAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTC
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACATGCTGAGGTATTTTC
*
26696727 AATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
59 AATTTCTGTTTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
26696781 TGCAGATCAC
Statistics
Matches: 508, Mismatches: 38, Indels: 34
0.88 0.07 0.06
Matches are distributed among these distances:
143 2 0.00
144 103 0.20
146 24 0.05
147 21 0.04
148 44 0.09
149 4 0.01
150 6 0.01
151 165 0.32
152 1 0.00
153 24 0.05
154 4 0.01
158 72 0.14
159 38 0.07
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (148 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACATGCTGAGGTATTTTCAATTTCT
GTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTA
ATTTCAATTTCTGTTTTC
Found at i:26696351 original size:79 final size:76
Alignment explanation
Indices: 26696043--26696780 Score: 865
Period size: 72 Copynumber: 9.8 Consensus size: 76
26696033 CAATTTCTGC
* * *
26696043 TTTTCAATTTATATTTTTC-AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
*
26696107 CACGCTGAGGTAA
65 CATGCTGAGGT-A
* **
26696120 TTTTCAATTTCTGTTGTT--AAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
*
26696183 CACGCTGAGGTA
65 CATGCTGAGGTA
* * ** *
26696195 ATTTCAATTTCTG-TTTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
1 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
26696255 CATGCTGAGGTA
65 CATGCTGAGGTA
*
26696267 TTTTCAATTTTTGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGA
1 TTTTCAATTTCTGTTTTTC--AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-
*
26696332 GACACGCTGAGGTA
63 GACATGCTGAGGTA
* *
26696346 ATTTCAATTTCTG-TTTTC----AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGA
1 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
*
26696406 CACGCTGAGGTA
65 CATGCTGAGGTA
* * *
26696418 ATTTCAATTTCTG-TTTTC----AAAATTCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGA
1 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
* *
26696478 CACGCTGCGGTA
65 CATGCTGAGGTA
* **
26696490 ATTTCAATTTCTG-TTTTC----AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGTT
1 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--
26696550 CACATGCTGAGGTA
64 -ACATGCTGAGGTA
* *
26696564 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGTT
1 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--
26696629 CACATGCTGAGGTA
64 -ACATGCTGAGGTA
* *
26696643 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGTT
1 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--
26696708 CACATGCTGAGGTA
64 -ACATGCTGAGGTA
*
26696722 TTTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTGTTTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
26696781 TGCAGATCAC
Statistics
Matches: 607, Mismatches: 35, Indels: 35
0.90 0.05 0.05
Matches are distributed among these distances:
71 2 0.00
72 235 0.39
73 6 0.01
74 26 0.04
75 17 0.03
76 53 0.09
77 15 0.02
78 5 0.01
79 210 0.35
80 38 0.06
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAC
ATGCTGAGGTA
Found at i:26697541 original size:22 final size:22
Alignment explanation
Indices: 26697513--26697565 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
26697503 AAACCCAAAT
26697513 ATTAAACCCAATTCAAAAGCCC
1 ATTAAACCCAATTCAAAAGCCC
*
26697535 ATTAAACCTAATTCAAAAGCCC
1 ATTAAACCCAATTCAAAAGCCC
26697557 ATTAAACCC
1 ATTAAACCC
26697566 CCCCAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.45, C:0.30, G:0.04, T:0.21
Consensus pattern (22 bp):
ATTAAACCCAATTCAAAAGCCC
Found at i:26697592 original size:17 final size:17
Alignment explanation
Indices: 26697570--26697629 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
26697560 AAACCCCCCC
26697570 AAAAAAACCTAACCAAA
1 AAAAAAACCTAACCAAA
** **
26697587 AAAAAAA-AAAGAAGAAA
1 AAAAAAACCTA-ACCAAA
*
26697604 AAGAAAAACCTAACCCAA
1 AA-AAAAACCTAACCAAA
26697622 AAAAAAAC
1 AAAAAAAC
26697630 TAAGAAACCC
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
16 1 0.03
17 19 0.61
18 10 0.32
19 1 0.03
ACGTcount: A:0.75, C:0.17, G:0.05, T:0.03
Consensus pattern (17 bp):
AAAAAAACCTAACCAAA
Found at i:26698472 original size:11 final size:11
Alignment explanation
Indices: 26698448--26698492 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
26698438 TTCTAATACG
*
26698448 TATATATATAT
1 TATATATATTT
*
26698459 TATATGTATTT
1 TATATATATTT
*
26698470 TATATATATTA
1 TATATATATTT
*
26698481 TGTATATATTT
1 TATATATATTT
26698492 T
1 T
26698493 TTAATGCAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (11 bp):
TATATATATTT
Found at i:26698494 original size:24 final size:24
Alignment explanation
Indices: 26698448--26698606 Score: 67
Period size: 24 Copynumber: 7.0 Consensus size: 24
26698438 TTCTAATACG
* *
26698448 TATATATA-TAT-TATATGTATTT
1 TATATATATTATGTATATATTTTT
26698470 TATATATATTATGTATATATTTTT
1 TATATATATTATGTATATATTTTT
*
26698494 TA-ATGCA-ATTA-GTTATATATTTCT
1 TATAT--ATATTATG-TATATATTTTT
* *
26698518 TATACTAT-TCCATGTATGTA--TTT
1 TATA-TATAT-TATGTATATATTTTT
* *
26698541 TATATCATCTTATGTATATA-TTCT
1 TATAT-ATATTATGTATATATTTTT
***
26698565 TA-A-ATATTAT-TATATA-TAAA
1 TATATATATTATGTATATATTTTT
*
26698585 TATATATA-TATATATATATTTT
1 TATATATATTATGTATATATTTT
26698607 AAAATACCAT
Statistics
Matches: 105, Mismatches: 15, Indels: 33
0.69 0.10 0.22
Matches are distributed among these distances:
20 9 0.09
21 10 0.10
22 18 0.17
23 24 0.23
24 34 0.32
25 8 0.08
26 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (24 bp):
TATATATATTATGTATATATTTTT
Found at i:26698850 original size:3 final size:3
Alignment explanation
Indices: 26698811--26698836 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26698801 TTATTGTAGA
26698811 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
26698837 CATACTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:26702683 original size:29 final size:30
Alignment explanation
Indices: 26702621--26702683 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 30
26702611 AAAAAGGTTG
* *
26702621 ATTTTCGATTTTCTTCTCTTTTTTTTTTCT
1 ATTTTCGATTTTCTTCTCTTTTTTATTTAT
*
26702651 -TTTTTGATTCTT-TTC-CTTTTTTATTTAT
1 ATTTTCGATT-TTCTTCTCTTTTTTATTTAT
26702679 ATTTT
1 ATTTT
26702684 AAATCAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
28 11 0.39
29 15 0.54
30 2 0.07
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.75
Consensus pattern (30 bp):
ATTTTCGATTTTCTTCTCTTTTTTATTTAT
Found at i:26703652 original size:26 final size:25
Alignment explanation
Indices: 26703618--26703681 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 25
26703608 AGGCTATTCC
* * *
26703618 TTTTTAAATTTCATATACATTATTTG
1 TTTTAAAATTT-ATATACATTACTTA
*
26703644 TTTTAAAATATTATATATATTACTTA
1 TTTTAAAAT-TTATATACATTACTTA
26703670 TTTTGAAAATTT
1 TTTT-AAAATTT
26703682 TTAGATACCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 25 0.78
27 7 0.22
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (25 bp):
TTTTAAAATTTATATACATTACTTA
Found at i:26704024 original size:23 final size:23
Alignment explanation
Indices: 26703941--26704034 Score: 107
Period size: 25 Copynumber: 3.9 Consensus size: 23
26703931 TTAAAATTTC
26703941 TTTTATATTTATTTATTTTAAGCT
1 TTTTATA-TTATTTATTTTAAGCT
* *
26703965 ACTTTAGTATTATTTATTTTAAGTT
1 -TTTTA-TATTATTTATTTTAAGCT
* *
26703990 TTTATATATTATTTATTTGAAACT
1 TTT-TATATTATTTATTTTAAGCT
*
26704014 TTTTATATTATTTACTTTAAG
1 TTTTATATTATTTATTTTAAG
26704035 TCGCTTTATT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
23 15 0.26
24 20 0.34
25 21 0.36
26 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (23 bp):
TTTTATATTATTTATTTTAAGCT
Found at i:26704043 original size:49 final size:47
Alignment explanation
Indices: 26703942--26704081 Score: 144
Period size: 49 Copynumber: 2.9 Consensus size: 47
26703932 TAAAATTTCT
* * * *
26703942 TTTATAT-TTATTTATTTTAAGCTACTTTAGTATTATTTATTTTAAGTT
1 TTTATATATTATTTATTTTAAACT-TTTTA-TATTATTTACTTTAAGTC
*
26703990 TTTATATATTATTTATTTGAAACTTTTTATATTATTTACTTTAAGTCGC
1 TTTATATATTATTTATTTTAAACTTTTTATATTATTTACTTTAAGT--C
*
26704039 TTTAT-TCATCATTTATTTTAAACTTTGTT-T-TTATTTACTTTAA
1 TTTATAT-ATTATTTATTTTAAACTTT-TTATATTATTTACTTTAA
26704082 TTTCATTTTA
Statistics
Matches: 80, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
47 16 0.20
48 25 0.31
49 37 0.46
50 2 0.03
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (47 bp):
TTTATATATTATTTATTTTAAACTTTTTATATTATTTACTTTAAGTC
Found at i:26704124 original size:25 final size:25
Alignment explanation
Indices: 26704082--26704131 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
26704072 TTTACTTTAA
26704082 TTTCATTTTATGAATATT-ATGTTG
1 TTTCATTTTATGAATATTAATGTTG
*
26704106 TTTCATTGTTATGATTATTAATGTTG
1 TTTCATT-TTATGAATATTAATGTTG
26704132 AAATTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 10 0.43
26 6 0.26
ACGTcount: A:0.24, C:0.04, G:0.14, T:0.58
Consensus pattern (25 bp):
TTTCATTTTATGAATATTAATGTTG
Found at i:26713387 original size:2 final size:2
Alignment explanation
Indices: 26713380--26713424 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
26713370 ATGTACAAAG
26713380 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26713422 AT A
1 AT A
26713425 GAAAGGAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26713826 original size:21 final size:21
Alignment explanation
Indices: 26713788--26713827 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26713778 AAAAACTTAG
** *
26713788 AATAAAATAGTATTAAAAAGA
1 AATAAAATAAAATAAAAAAGA
26713809 AATAAAATAAAATAAAAAA
1 AATAAAATAAAATAAAAAA
26713828 ATAATTTCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (21 bp):
AATAAAATAAAATAAAAAAGA
Found at i:26740621 original size:31 final size:31
Alignment explanation
Indices: 26740583--26740785 Score: 280
Period size: 31 Copynumber: 6.5 Consensus size: 31
26740573 TTTAACGGTT
26740583 ACTAGGCCGAAGCCTTTTCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
*
26740614 ACTAGGCCGAAGCCTTATCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
* * *
26740645 ACTGGGCCGAAGACTTATCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
* * **
26740676 TCTGGGTAGAAGCCTTTTCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
* * *
26740707 ACTAGGCTGAAGCCTTATCATAAATCTTATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
* *
26740738 TCTAGGCTGAAGCCTTTTCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
*
26740769 ACTGGGCCGAAGCCTTT
1 ACTAGGCCGAAGCCTTT
26740786 ACTGTAAACG
Statistics
Matches: 152, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 152 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (31 bp):
ACTAGGCCGAAGCCTTTTCATAAATCATATC
Found at i:26741018 original size:24 final size:24
Alignment explanation
Indices: 26740991--26741098 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 24
26740981 CTGGAGGCCT
26740991 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
26741015 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTAATAAACTGGGGCAA
** *
26741039 AGCCCTTTTCGGTAAACTAGGGCAA
1 AGCCCTTTT-AATAAACTGGGGCAA
** *
26741064 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
26741089 AGCCCTTTTA
1 AGCCCTTTTA
26741099 GCACTTCCTC
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
23 7 0.09
24 24 0.32
25 45 0.59
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:26741061 original size:25 final size:25
Alignment explanation
Indices: 26741004--26741097 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
26740994 CTCTTTTAAT
*
26741004 AACTGGGGCAAAGCCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
26741028 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
26741053 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
26741078 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
26741098 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
24 20 0.31
25 45 0.69
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:26741149 original size:16 final size:16
Alignment explanation
Indices: 26741128--26741158 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26741118 AACCCAACCC
*
26741128 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
26741144 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
26741159 CCCATGTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:26741979 original size:27 final size:26
Alignment explanation
Indices: 26741889--26741971 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
26741879 GGGCATATTC
* *
26741889 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGGT-TTACG
*
26741916 GTCACTTTACCCTATAGGGGTTTACG
1 GTCACTTTACCCTACAGGGGTTTACG
26741942 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGG-TTTACG
26741969 GTC
1 GTC
26741972 TTTTTACCTG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 24 0.47
27 27 0.53
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (26 bp):
GTCACTTTACCCTACAGGGGTTTACG
Found at i:26742063 original size:27 final size:27
Alignment explanation
Indices: 26742010--26742342 Score: 208
Period size: 27 Copynumber: 12.3 Consensus size: 27
26742000 TTTCACCCTA
* * * *
26742010 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
26742037 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
26742064 CAATGGTATTTCT-ATAATTTTTAAAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * *
26742093 TAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * *
26742120 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * * *
26742147 TGAGGATATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
26742174 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
26742201 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
26742228 TAGGGGTATTTTAGCAATTTTATAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
26742255 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* * *
26742281 CGAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
26742308 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
26742335 CGAGGGTA
1 CAAGGGTA
26742343 AAATAGTAAT
Statistics
Matches: 248, Mismatches: 49, Indels: 18
0.79 0.16 0.06
Matches are distributed among these distances:
26 24 0.10
27 195 0.79
28 15 0.06
29 14 0.06
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:26742213 original size:81 final size:79
Alignment explanation
Indices: 26742095--26742301 Score: 229
Period size: 81 Copynumber: 2.6 Consensus size: 79
26742085 TAAAAAGTTA
** *
26742095 AGGGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGATATTT
1 AGGGTATTT-TGGTAATTTTACAAAT-AGGGGTATTTTGGTAATTTTACAAACTAG-GGATATTT
* *
26742158 CGGTAATTTCACAAACC
63 CAGCAATTTCACAAACC
* *
26742175 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 AG-GGTATTTTGGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTACAAACTAGGGATATTTC
* * *
26742240 AGCAATTTTATAGACC
64 AGCAATTTCACAAACC
** *
26742256 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTTACAAATAG-GGGTATTTTGGTAATTTT
26742302 GTAAATCAAG
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
79 2 0.02
80 41 0.38
81 63 0.58
82 3 0.03
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (79 bp):
AGGGTATTTTGGTAATTTTACAAATAGGGGTATTTTGGTAATTTTACAAACTAGGGATATTTCAG
CAATTTCACAAACC
Found at i:26742315 original size:80 final size:81
Alignment explanation
Indices: 26742121--26742328 Score: 233
Period size: 80 Copynumber: 2.6 Consensus size: 81
26742111 TTTGTAAATC
* * * ** * * * *
26742121 AGGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGCAATTTTATAGACCAGTGGTATTTT
*
26742186 GGTAATTTTACAAACT
66 GGTAATTTTACAAACG
*
26742202 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGCAATTTTATAGACCAG-GGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGCAATTTTATAGACCAGTGGTATTTT
* *
26742266 GGTAATTTTACTGATCG
66 GGTAATTTTAC-AAACG
** *
26742283 A-GGGTATTTTGGTAATTTTGTAAA-TCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTTAGCAATTTT
26742329 GTAAATCGAG
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 58 0.54
81 49 0.45
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGCAATTTTATAGACCAGTGGTATTTT
GGTAATTTTACAAACG
Found at i:26742337 original size:54 final size:54
Alignment explanation
Indices: 26742012--26742488 Score: 205
Period size: 54 Copynumber: 8.8 Consensus size: 54
26742002 TCACCCTACA
* * * * * * * * *
26742012 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * *
26742066 ATGGTATTTCT-ATAATTTTTAAAAAGTTAAGGGTATTTCT-GTAATTTTGTAAATC-
1 AGGGTATTT-TGGTAA-TTTTATAAA-TCAAGGGTATTT-TAGTAATTTTATAAATCG
* ** * ** * * *
26742121 AGGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAA-CC
1 A-GGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * *
26742175 AGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATC-AAGGGTATTTTAGTAATTTTATAAATCG
* * * * * *
26742229 AGGGGTATTTTAGCAATTTTATAGA-CCAGGGTATTTTGGTAATTTTACT-GATCG
1 A-GGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTA-TAAATCG
* *
26742283 AGGGTATTTTGGTAATTTTGTAAATCAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
*** * * * ** *** *
26742337 AGGGTAAAATAGTAATTCTGTAAATCAATAGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
**** * * ** * **** * *
26742391 AGGGTAAAACGATAATTCTATAAATTGAGGATAAAACAGTAATTATGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * *
26742445 AGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATT
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATT
26742489 GGTAAAGTAA
Statistics
Matches: 326, Mismatches: 82, Indels: 30
0.74 0.19 0.07
Matches are distributed among these distances:
53 42 0.13
54 232 0.71
55 18 0.06
56 34 0.10
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
Found at i:26742349 original size:27 final size:27
Alignment explanation
Indices: 26742294--26742450 Score: 154
Period size: 27 Copynumber: 5.8 Consensus size: 27
26742284 GGGTATTTTG
* * ***
26742294 GTAATTTTGTAAATCAAGGGTATTTTA
1 GTAATTCTGTAAATCGAGGGTAAAATA
*
26742321 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* **
26742348 GTAATTCTGTAAATCAATAGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
26742375 GTAATTCTATAAATCGAGGGTAAAA-C
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * * *
26742401 GATAATTCTATAAATTGAGGATAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAATA
*
26742429 GTAATTATGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
26742451 CTTTGGTAAT
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 106 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATA
Found at i:26742487 original size:81 final size:81
Alignment explanation
Indices: 26742279--26742488 Score: 195
Period size: 81 Copynumber: 2.6 Consensus size: 81
26742269 AATTTTACTG
* * * * * * *
26742279 ATCGAGGGTATTTTGGTAATTTTGTAAATCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTTAATAATTCTATAAATCGAGGATAA
* *
26742344 AATAGTAATTCTGTAA
66 AACAGTAATTATGTAA
* ** ** * * ***** *
26742360 ATCAATAGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATTGAGGATAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTTAATAATTCTATAAATCGAGGATAA
26742425 AACAGTAATTATGTAA
66 AACAGTAATTATGTAA
* * *
26742441 ATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATT
1 ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTTAATAATT
26742489 GGTAAAGTAA
Statistics
Matches: 92, Mismatches: 37, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.36
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTTAATAATTCTATAAATCGAGGATAA
AACAGTAATTATGTAA
Found at i:26746165 original size:46 final size:46
Alignment explanation
Indices: 26746110--26746290 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
26746100 TAGGATGGTT
*
26746110 GAGCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
26746156 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
26746202 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
26746249 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26746291 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:26746271 original size:93 final size:93
Alignment explanation
Indices: 26746112--26746282 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
26746102 GGATGGTTGA
* *
26746112 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26746177 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
26746205 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26746270 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26746283 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26758190 original size:21 final size:19
Alignment explanation
Indices: 26758166--26758209 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
26758156 TAGGAGCTAA
26758166 TTATAGCATTTAGATTAGTTT
1 TTATAGCATTT-GA-TAGTTT
* *
26758187 TTATTGCATTTTATAGTTT
1 TTATAGCATTTGATAGTTT
26758206 TTAT
1 TTAT
26758210 TGGATTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
20 1 0.05
21 10 0.48
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (19 bp):
TTATAGCATTTGATAGTTT
Found at i:26762908 original size:2 final size:2
Alignment explanation
Indices: 26762901--26762933 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
26762891 GAGACCAAAT
*
26762901 TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26762934 TGAGAACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:26765051 original size:23 final size:24
Alignment explanation
Indices: 26765014--26765058 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
26765004 AATGGCTACG
26765014 ATAATGCAGTATTTTC-GAAAAAC
1 ATAATGCAGTATTTTCAGAAAAAC
26765037 ATAATGCAG-ATTTTTCAGAAAA
1 ATAATGCAGTA-TTTTCAGAAAA
26765059 CTCCCTACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 1 0.05
23 14 0.70
24 5 0.25
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.31
Consensus pattern (24 bp):
ATAATGCAGTATTTTCAGAAAAAC
Found at i:26768037 original size:21 final size:21
Alignment explanation
Indices: 26768012--26768053 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26768002 TTTTTGAAAG
* *
26768012 ATATGTATTGGATTGAATTGA
1 ATATGAATTGGATTAAATTGA
*
26768033 ATATGAATTGTATTAAATTGA
1 ATATGAATTGGATTAAATTGA
26768054 GTTAAATTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
ATATGAATTGGATTAAATTGA
Found at i:26768441 original size:25 final size:25
Alignment explanation
Indices: 26768413--26768481 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 25
26768403 AGCATCCGAT
*
26768413 TTTGGCTCTCACGAGCTTCTCAATA
1 TTTGGCTCTCAAGAGCTTCTCAATA
**
26768438 TTTGGCTCTCTTGAGCTTCTCAATA
1 TTTGGCTCTCAAGAGCTTCTCAATA
** *
26768463 AATGGCTCGCAAGAGCTTC
1 TTTGGCTCTCAAGAGCTTC
26768482 CAGTTATACA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (25 bp):
TTTGGCTCTCAAGAGCTTCTCAATA
Found at i:26768503 original size:50 final size:50
Alignment explanation
Indices: 26768449--26768558 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 50
26768439 TTGGCTCTCT
* * *
26768449 TGAGCTTCTCAATAAATGGCTCGCAAGAGC-TTCCAGTTATACA-GCTCACA
1 TGAGCTTCCCAATAAATGGATCGAAAGAGCTTTCC-GTT-TACATGCTCACA
* * *
26768499 TGAGCTTCCCATTATATGGATCGAAAGAGCTTTCCGTTTACATGCTCATA
1 TGAGCTTCCCAATAAATGGATCGAAAGAGCTTTCCGTTTACATGCTCACA
26768549 TGAGCATTCC
1 TGAGC-TTCC
26768559 TGAATATGAA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
49 4 0.08
50 39 0.76
51 8 0.16
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (50 bp):
TGAGCTTCCCAATAAATGGATCGAAAGAGCTTTCCGTTTACATGCTCACA
Found at i:26780370 original size:23 final size:22
Alignment explanation
Indices: 26780344--26780388 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
26780334 GTGGAGATAA
*
26780344 AATAC-ATGTGTAATGATATGTAT
1 AATACAAT-TGTAAT-ACATGTAT
26780367 AATACAATTGTAATACATGTAT
1 AATACAATTGTAATACATGTAT
26780389 TGTTTATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 11 0.55
24 2 0.10
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.38
Consensus pattern (22 bp):
AATACAATTGTAATACATGTAT
Found at i:26780548 original size:3 final size:3
Alignment explanation
Indices: 26780540--26780611 Score: 144
Period size: 3 Copynumber: 24.0 Consensus size: 3
26780530 AAGATATTTG
26780540 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26780588 TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
26780612 GTGTGTATAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26781978 original size:4 final size:4
Alignment explanation
Indices: 26781969--26781995 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
26781959 GGTTTAGTAA
26781969 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
26781996 GTTATATGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:26789465 original size:35 final size:35
Alignment explanation
Indices: 26789415--26789486 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
26789405 ATCCGTCAAA
26789415 GTCTGAATCTATTAATAGGAGTAATTAAAGGAAAG
1 GTCTGAATCTATTAATAGGAGTAATTAAAGGAAAG
*
26789450 GTCTGAATCTTTTAATAGGAGTAATTAAAGGAAAG
1 GTCTGAATCTATTAATAGGAGTAATTAAAGGAAAG
26789485 GT
1 GT
26789487 TAAACTGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.31
Consensus pattern (35 bp):
GTCTGAATCTATTAATAGGAGTAATTAAAGGAAAG
Found at i:26795156 original size:25 final size:25
Alignment explanation
Indices: 26795078--26795164 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 25
26795068 AGCTCTCACG
*
26795078 AGCTTCCC-ATTATTTAGCTCT-TATA
1 AGCTTCCCGA-TATTTGGCTCTCT-TA
* * *
26795103 AGCATCCTGATATTTGGCTCTCATA
1 AGCTTCCCGATATTTGGCTCTCTTA
*
26795128 AGCTTCCCGATATTTGGCTCTCTTG
1 AGCTTCCCGATATTTGGCTCTCTTA
*
26795153 AGCTTCTCGATA
1 AGCTTCCCGATA
26795165 AATGGCTCAC
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
25 50 0.98
26 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (25 bp):
AGCTTCCCGATATTTGGCTCTCTTA
Found at i:26795170 original size:25 final size:25
Alignment explanation
Indices: 26795094--26795186 Score: 71
Period size: 25 Copynumber: 3.7 Consensus size: 25
26795084 CCATTATTTA
* * * **
26795094 GCTCTTATAAGCATCCTGATATTTG
1 GCTCTCATAAGCTTCCCGATAAATG
**
26795119 GCTCTCATAAGCTTCCCGATATTTG
1 GCTCTCATAAGCTTCCCGATAAATG
* * *
26795144 GCTCTCTTGAGCTTCTCGATAAATG
1 GCTCTCATAAGCTTCCCGATAAATG
*
26795169 GCTCACA-AGAGCTTCCCG
1 GCTCTCATA-AGCTTCCCG
26795187 TTATACAACT
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (25 bp):
GCTCTCATAAGCTTCCCGATAAATG
Found at i:26795198 original size:25 final size:25
Alignment explanation
Indices: 26795170--26795242 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 25
26795160 CGATAAATGG
26795170 CTCACAAGAGCTTCCCGTTATACAA
1 CTCACAAGAGCTTCCCGTTATACAA
* * **
26795195 CTCACATGAGCTTCCCCTTATACGG
1 CTCACAAGAGCTTCCCGTTATACAA
26795220 CTCGA-AAGAGCTTCCCGTT-TACA
1 CTC-ACAAGAGCTTCCCGTTATACA
26795243 TGCTCGTATG
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
24 3 0.08
25 36 0.90
26 1 0.03
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (25 bp):
CTCACAAGAGCTTCCCGTTATACAA
Found at i:26795255 original size:25 final size:25
Alignment explanation
Indices: 26795177--26795255 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
26795167 TGGCTCACAA
*
26795177 GAGCTTCCCGTTATACAACTC-ACAT
1 GAGCTTCCCGTTATACAGCTCGA-AT
* * *
26795202 GAGCTTCCCCTTATACGGCTCGAAA
1 GAGCTTCCCGTTATACAGCTCGAAT
*
26795227 GAGCTTCCCGTT-TACATGCTCGTAT
1 GAGCTTCCCGTTATACA-GCTCGAAT
26795252 GAGC
1 GAGC
26795256 ATTATATACT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
24 3 0.07
25 40 0.91
26 1 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (25 bp):
GAGCTTCCCGTTATACAGCTCGAAT
Found at i:26798316 original size:40 final size:40
Alignment explanation
Indices: 26798272--26798410 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
26798262 GGATATAACG
*
26798272 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* * *
26798312 ACTCGCACGAATGCCTTCGAGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* * * * *
26798352 ACTCACACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* *
26798391 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
26798411 ATCTTAGTCC
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 32 0.38
40 46 0.55
41 6 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:26798380 original size:79 final size:81
Alignment explanation
Indices: 26798279--26798463 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
26798269 ACGACTCGCT
** *
26798279 CAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGAGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTCG-GATCTTAACCC
* *
26798342 GGGTTTAGTAACTCA-CA
64 GGATATAGTAACTCAGCA
* **
26798359 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAACGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTAACCCGG
* *
26798423 ATATAGTCACTTAGCA
66 ATATAGTAACTCAGCA
26798439 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26798464 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 56 0.62
80 33 0.36
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTAACCCGG
ATATAGTAACTCAGCA
Found at i:26803594 original size:30 final size:30
Alignment explanation
Indices: 26803560--26803619 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26803550 CTTTAATACG
* *
26803560 AACTTTGGAAAAATTACATTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
* *
26803590 AACTTTAGCATAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
26803620 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTGCCCCTA
Found at i:26807834 original size:14 final size:14
Alignment explanation
Indices: 26807815--26807843 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26807805 GTGGATTTAA
26807815 AATTAAAAATAAAT
1 AATTAAAAATAAAT
26807829 AATTAAAAATAAAT
1 AATTAAAAATAAAT
26807843 A
1 A
26807844 GAACAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AATTAAAAATAAAT
Found at i:26811633 original size:20 final size:21
Alignment explanation
Indices: 26811594--26811640 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
26811584 ACTTATGGTA
26811594 TAAA-AATAAATATTTTATATT
1 TAAATAATAAATA-TTTATATT
26811615 TAAATAATAAATA-TTATATT
1 TAAATAATAAATATTTATATT
*
26811635 AAAATA
1 TAAATA
26811641 TTATATAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 12 0.50
21 4 0.17
22 8 0.33
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAATAATAAATATTTATATT
Found at i:26811752 original size:25 final size:23
Alignment explanation
Indices: 26811716--26811762 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
26811706 AATAAAGTTC
* *
26811716 AAAAATTCGAAATTCAAAATTAAT
1 AAAAATACGAAAATC-AAATTAAT
26811740 AAAAATACTGAAAATCAAATTAA
1 AAAAATAC-GAAAATCAAATTAA
26811763 ATTGAAGACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.62, C:0.09, G:0.04, T:0.26
Consensus pattern (23 bp):
AAAAATACGAAAATCAAATTAAT
Found at i:26813516 original size:88 final size:88
Alignment explanation
Indices: 26813367--26813531 Score: 285
Period size: 88 Copynumber: 1.9 Consensus size: 88
26813357 CATCATGGAT
* * * *
26813367 ATGAATATATAAATACGAAGAAAGATATATTCAGGGTTGATTGAGTCTTAGCTTGGCTAATAACG
1 ATGAATATATAAATACGAAGAAAGATATATTCAGGGTCGACTAAGTCTTAGCTTGACTAATAACG
*
26813432 GTATTATTGATAGTACAAGAGGC
66 GTATCATTGATAGTACAAGAGGC
26813455 ATGAATATATAAATACGAAGAAAGATATATTCAGGGTCGACTAAGTCTTAGCTTGACTAATAACG
1 ATGAATATATAAATACGAAGAAAGATATATTCAGGGTCGACTAAGTCTTAGCTTGACTAATAACG
26813520 GTATCATTGATA
66 GTATCATTGATA
26813532 ATGTAAGAGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 72 1.00
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (88 bp):
ATGAATATATAAATACGAAGAAAGATATATTCAGGGTCGACTAAGTCTTAGCTTGACTAATAACG
GTATCATTGATAGTACAAGAGGC
Found at i:26815261 original size:49 final size:49
Alignment explanation
Indices: 26815166--26815262 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 49
26815156 ATCTATTTAT
* * * * *
26815166 AGGTTGAAAAACCTTATTCTAATCAATGTCAAATAGATGAAGTATAGTA
1 AGGTTGAAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGTA
*
26815215 AGGTTGAAAAACATTATTCTAATAAATGTAAAATAAAAGAATTATAGT
1 AGGTTGAAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGT
26815263 TCTATATGGA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.31
Consensus pattern (49 bp):
AGGTTGAAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGTA
Found at i:26817922 original size:14 final size:14
Alignment explanation
Indices: 26817899--26817934 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
26817889 TACAATATCC
26817899 AAATAATAGCAACA
1 AAATAATAGCAACA
*
26817913 AAATAGTAGCAACA
1 AAATAATAGCAACA
*
26817927 TAATAATA
1 AAATAATA
26817935 AAATGGTAGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.61, C:0.11, G:0.08, T:0.19
Consensus pattern (14 bp):
AAATAATAGCAACA
Found at i:26818892 original size:2 final size:2
Alignment explanation
Indices: 26818847--26818875 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
26818837 TGTTTTCAGC
26818847 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26818876 ACCAACAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26823756 original size:29 final size:29
Alignment explanation
Indices: 26823710--26823768 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
26823700 ACTTTTGTTA
* * **
26823710 AATACATGTATCAGATTAGACCAAAAAAT
1 AATACAAGTACCAGATTAGAAAAAAAAAT
*
26823739 AATACAAGTACCATATTAGAAAAAAAAAT
1 AATACAAGTACCAGATTAGAAAAAAAAAT
26823768 A
1 A
26823769 TTAAACTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.22
Consensus pattern (29 bp):
AATACAAGTACCAGATTAGAAAAAAAAAT
Found at i:26824889 original size:21 final size:21
Alignment explanation
Indices: 26824863--26824902 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26824853 TGAAACAAAG
26824863 AAAAAAACACAAAAAAAAATA
1 AAAAAAACACAAAAAAAAATA
* *
26824884 AAAAAAACAGAACAAAAAA
1 AAAAAAACACAAAAAAAAA
26824903 GAAATTAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.85, C:0.10, G:0.03, T:0.03
Consensus pattern (21 bp):
AAAAAAACACAAAAAAAAATA
Found at i:26832863 original size:53 final size:54
Alignment explanation
Indices: 26832796--26832907 Score: 163
Period size: 53 Copynumber: 2.1 Consensus size: 54
26832786 TATTTTACCT
* * *
26832796 AAAAAGGGAGAGGCCAAGGTGAAAACCCGCAAAGGGCACATTGAGACCCAAA-A
1 AAAAAGGGAAAGGCCAAGGTGAAAACCCGCAAAGGGCACATTGAAACCAAAAGA
* * *
26832849 AAAAATGGAAAGGCCAAGGTGAAAATCCGCAAAGGGCACTTTGAAACCAAAAGA
1 AAAAAGGGAAAGGCCAAGGTGAAAACCCGCAAAGGGCACATTGAAACCAAAAGA
26832903 AAAAA
1 AAAAA
26832908 AAAGAAAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 46 0.88
54 6 0.12
ACGTcount: A:0.49, C:0.18, G:0.25, T:0.08
Consensus pattern (54 bp):
AAAAAGGGAAAGGCCAAGGTGAAAACCCGCAAAGGGCACATTGAAACCAAAAGA
Found at i:26833888 original size:88 final size:88
Alignment explanation
Indices: 26833739--26833904 Score: 251
Period size: 88 Copynumber: 1.9 Consensus size: 88
26833729 GTGAATTCAC
* * * * * *
26833739 AGATCTTATCTTCCTAAGCATTAGTGGAGCGAATCGAAGACAATGAGCCTTAACCTCCTAAGTAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACAATGAGCCTTAACCCCCTAAGCAG
26833804 TAGGGTAACAGGCCGAAGATTGT
66 TAGGGTAACAGGCCGAAGATTGT
* **
26833827 AGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACAATGAGCCTTAACCCCCTAAGCAG
26833892 TAGGGTAACAGGC
66 TAGGGTAACAGGC
26833905 TGAAAATTAC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 69 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (88 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACAATGAGCCTTAACCCCCTAAGCAG
TAGGGTAACAGGCCGAAGATTGT
Found at i:26833927 original size:88 final size:88
Alignment explanation
Indices: 26833732--26833929 Score: 245
Period size: 88 Copynumber: 2.2 Consensus size: 88
26833722 AACATCGGTG
* * * * *
26833732 AATTCACAGATCTTATCTTCCTAAGCATTAGTGGAGCGAATCGAAGACAATGAGCCTTAACCTCC
1 AATTCA-AGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACAATGAGCCTTAACCCCC
*
26833797 TAAGTAGTAGGGTAACAGGCCGAA
65 TAAGCAGTAGGGTAACAGGCCGAA
* ** * **
26833821 GATTGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCT
1 AATTCAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACAATGAGCCTTAACCCCCT
*
26833886 AAGCAGTAGGGTAACAGGCTGAA
66 AAGCAGTAGGGTAACAGGCCGAA
*
26833909 AATTACAAG-TTTTATCTCCCT
1 AATT-CAAGATCTTATCTCCCT
26833930 GAAGTTGCAG
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
88 85 0.94
89 5 0.06
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (88 bp):
AATTCAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACAATGAGCCTTAACCCCCT
AAGCAGTAGGGTAACAGGCCGAA
Found at i:26834071 original size:46 final size:45
Alignment explanation
Indices: 26833978--26834096 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 45
26833968 GATAGCAGAT
*** *
26833978 CTTATCTCTCTGAAGTTGCAGTAGAGCA-GATCGGAGCCGCAATC
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAGCCGCAAAC
26834022 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATG-CGCAAAC
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGAT-AAAA-GCCGCAAAC
* * *
26834068 CTTATCTCCCTAAAGTTGCAGTGGAGCAG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAG
26834097 TTGCAGTAGA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
44 28 0.43
45 3 0.05
46 33 0.51
47 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (45 bp):
CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAGCCGCAAAC
Found at i:26834100 original size:14 final size:14
Alignment explanation
Indices: 26834081--26834110 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26834071 ATCTCCCTAA
*
26834081 AGTTGCAGTGGAGC
1 AGTTGCAGTAGAGC
26834095 AGTTGCAGTAGAGC
1 AGTTGCAGTAGAGC
26834109 AG
1 AG
26834111 ATTAAAAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.40, T:0.20
Consensus pattern (14 bp):
AGTTGCAGTAGAGC
Found at i:26834895 original size:20 final size:19
Alignment explanation
Indices: 26834856--26834895 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
26834846 ATCTGCTTAC
*
26834856 TTCATTTTTTATGTGTATT
1 TTCATTTTTTATGTGCATT
*
26834875 TTCATTTTTTTATTTGCATT
1 TTCA-TTTTTTATGTGCATT
26834895 T
1 T
26834896 AAAAACAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70
Consensus pattern (19 bp):
TTCATTTTTTATGTGCATT
Done.