Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 99 of 345
Found at i:26835147 original size:11 final size:12
Alignment explanation
Indices: 26835120--26835146 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26835110 GGGTAACGGC
26835120 TTTTAGATTTTT
1 TTTTAGATTTTT
26835132 TTTTAGATTTTT
1 TTTTAGATTTTT
26835144 TTT
1 TTT
26835147 ACTCTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (12 bp):
TTTTAGATTTTT
Found at i:26837430 original size:18 final size:20
Alignment explanation
Indices: 26837407--26837450 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
26837397 GTAATACATG
26837407 TATTTAATTA-T-TAAAAGA
1 TATTTAATTATTATAAAAGA
26837425 TATTT-ATTATTTATAAAAGA
1 TATTTAATTA-TTATAAAAGA
26837445 TATTTA
1 TATTTA
26837451 TATGATAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.18
18 5 0.23
19 1 0.05
20 12 0.55
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
TATTTAATTATTATAAAAGA
Found at i:26838148 original size:16 final size:18
Alignment explanation
Indices: 26838121--26838155 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
26838111 TAGAGAGCTG
26838121 AAATTAGTTTAAA-GTGA
1 AAATTAGTTTAAATGTGA
26838138 AAATTAG-TTAAATGTGA
1 AAATTAGTTTAAATGTGA
26838155 A
1 A
26838156 GAATAAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (18 bp):
AAATTAGTTTAAATGTGA
Found at i:26838763 original size:6 final size:6
Alignment explanation
Indices: 26838754--26838790 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
26838744 TCTGTACCTG
*
26838754 ACTGTG ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT A
1 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT A
26838791 ACGTTATGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:26838988 original size:24 final size:22
Alignment explanation
Indices: 26838942--26838988 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
26838932 ATTTGATTGT
*
26838942 TACTGAATAAATGAATAACTGA
1 TACTGAATAAATGAATAAATGA
*
26838964 TACTGAATAATAATGATTAAATGA
1 TACTGAAT-A-AATGAATAAATGA
26838988 T
1 T
26838989 TGTTATTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 1 0.05
24 12 0.57
ACGTcount: A:0.49, C:0.06, G:0.13, T:0.32
Consensus pattern (22 bp):
TACTGAATAAATGAATAAATGA
Found at i:26860067 original size:12 final size:12
Alignment explanation
Indices: 26860050--26860075 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26860040 TAGATTGAAG
26860050 TCACAAATCTTA
1 TCACAAATCTTA
26860062 TCACAAATCTTA
1 TCACAAATCTTA
26860074 TC
1 TC
26860076 TCTTTGAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.27, G:0.00, T:0.35
Consensus pattern (12 bp):
TCACAAATCTTA
Found at i:26860176 original size:45 final size:44
Alignment explanation
Indices: 26860064--26860177 Score: 147
Period size: 45 Copynumber: 2.5 Consensus size: 44
26860054 AAATCTTATC
* * *
26860064 ACAAATCTTATCTCTTTGAAGTTACAGTAGAGCAAATTGAAGAT
1 ACAAATCTTATCTCTTTGAAGTTGCAATAGAGCAAATTAAAGAT
* * *
26860108 AGCAAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTAAAGCT
1 A-CAAATCTTATCTCTTTGAAGTTGCAATAGAGCAAATTAAAGAT
*
26860153 ACAAATCTTATTTCTTTGAAAGTTG
1 ACAAATCTTATCTCTTTG-AAGTTG
26860178 TAGTGGAACA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 16 0.27
45 44 0.73
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (44 bp):
ACAAATCTTATCTCTTTGAAGTTGCAATAGAGCAAATTAAAGAT
Found at i:26860190 original size:45 final size:44
Alignment explanation
Indices: 26860064--26860647 Score: 241
Period size: 44 Copynumber: 12.9 Consensus size: 44
26860054 AAATCTTATC
* * * *
26860064 ACAAATCTTATCTCTTTGAAGTTACAGTAGAGCAAATTGAAGAT
1 ACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCT
* *
26860108 AGCAAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTAAAGCT
1 A-CAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCT
* * * * *
26860153 ACAAATCTTATTTCTTTGAAAGTTGTAGTGGAACAGATTAAAACTATAAATT
1 ACAAATCTTATCTCTTTG-AAGTTGCAGTAGAGCAGATTAAAGC-------T
* ** * * *
26860205 AAAAATCTTATCTCCCTGAAGTTGAAGTGGAGCAGATTGAAA-CA
1 ACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATT-AAAGCT
* * * * * * *
26860249 ATAAGTCATA-CACCTCTGAAGTTGCAGTAG-GTCGGATTAAATCT
1 ACAAATCTTATC-TCTTTGAAGTTGCAGTAGAG-CAGATTAAAGCT
* ** * * * * *
26860293 ACCATAACAAGTCCTATCTCCCTAAAATTGCAGTGGA-CTATACTAAAGCTACAATCT
1 A-C---A-AA-TCTTATCTCTTTGAAGTTGCAGTAGAGC-AGA-T-----TA-AAGCT
* * * ** *
26860350 ACAAATCTTATCTCCTTGAAGTTACAATAGAGCAGATTGCAGAT
1 ACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCT
* *
26860394 AGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAACGCT
1 A-CAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCT
* * *
26860439 ACAAATCTTATCTC-TT----TTGCAGTGGAGTAGATTAAAGTT
1 ACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCT
* * * * *
26860478 ACAAATCTTATCTCTTTAAAATTGCAGTGGAGTAGATTAAAGTT
1 ACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCT
* ** * * * *
26860522 ACAAATCTCATCTCCCTGAAGTTGTAGTAGAGTAGATTGAAGAT
1 ACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCT
* * * ** * *
26860566 ACGAGTCTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCT
1 ACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCT
* * ** * * *
26860610 ACAAGTCTAATCTCCCTGATGTTGCAGTGGAGTAGATT
1 ACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATT
26860648 GAAGTAACAA
Statistics
Matches: 418, Mismatches: 86, Indels: 72
0.73 0.15 0.12
Matches are distributed among these distances:
39 33 0.08
40 2 0.00
43 6 0.01
44 187 0.45
45 95 0.23
48 1 0.00
49 2 0.00
50 19 0.05
51 42 0.10
52 21 0.05
53 1 0.00
56 3 0.01
57 6 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (44 bp):
ACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCT
Found at i:26860504 original size:44 final size:44
Alignment explanation
Indices: 26860349--26860659 Score: 272
Period size: 44 Copynumber: 7.2 Consensus size: 44
26860339 AGCTACAATC
* * * * * ** *
26860349 TACAAATCTTATCTCCTTGAAGTTACAATAGAGCAGATTGCAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGT
* * * * *
26860393 TAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAACGC
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGT
*
26860438 TACAAATCTTATCT--CT---TTTGCAGTGGAGTAGATTAAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGT
** * *
26860477 TACAAATCTTATCTCTTTAAAATTGCAGTGGAGTAGATTAAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGT
* * * * *
26860521 TACAAATCTCATCTCCCTGAAGTTGTAGTAGAGTAGATTGAAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGT
* * * * * *
26860565 TACGAGTCTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGT
* * * *
26860609 TACAAGTCTAATCTCCCTGATGTTGCAGTGGAGTAGATTGAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGT
*
26860653 AACAAAT
1 TACAAAT
26860660 TCTATGCCTC
Statistics
Matches: 220, Mismatches: 41, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
39 32 0.15
41 1 0.00
42 2 0.01
44 149 0.68
45 36 0.16
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGT
Found at i:26860961 original size:10 final size:10
Alignment explanation
Indices: 26860946--26860972 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
26860936 ACCCTAATGG
26860946 CCAAAATAGC
1 CCAAAATAGC
26860956 CCAAAATAGC
1 CCAAAATAGC
26860966 CCAAAAT
1 CCAAAAT
26860973 CTAAACTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.30, G:0.07, T:0.11
Consensus pattern (10 bp):
CCAAAATAGC
Found at i:26861269 original size:17 final size:17
Alignment explanation
Indices: 26861235--26861273 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
26861225 ATTTTTTTTG
26861235 AAACAAAAATAAAAAAA
1 AAACAAAAATAAAAAAA
*
26861252 AAACACAAAA-AAATAAA
1 AAACA-AAAATAAAAAAA
26861269 AAACA
1 AAACA
26861274 GAACACAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.85, C:0.10, G:0.00, T:0.05
Consensus pattern (17 bp):
AAACAAAAATAAAAAAA
Found at i:26861269 original size:20 final size:23
Alignment explanation
Indices: 26861239--26861288 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
26861229 TTTTTGAAAC
26861239 AAAAATAAAAAAA-A-AACACAA
1 AAAAATAAAAAAACAGAACACAA
26861260 AAAAAT-AAAAAACAGAACACAA
1 AAAAATAAAAAAACAGAACACAA
26861282 AAGAAAT
1 AA-AAAT
26861289 TAAAGGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.23
21 7 0.27
22 9 0.35
23 4 0.15
ACGTcount: A:0.80, C:0.10, G:0.04, T:0.06
Consensus pattern (23 bp):
AAAAATAAAAAAACAGAACACAA
Found at i:26861270 original size:22 final size:21
Alignment explanation
Indices: 26861239--26861288 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
26861229 TTTTTGAAAC
26861239 AAAAATAAAAAAAAAACACAA
1 AAAAATAAAAAAAAAACACAA
*
26861260 AAAAATAAAAAACAGAACACAA
1 AAAAATAAAAAA-AAAACACAA
26861282 AAGAAAT
1 AA-AAAT
26861289 TAAAGGTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 12 0.46
22 10 0.38
23 4 0.15
ACGTcount: A:0.80, C:0.10, G:0.04, T:0.06
Consensus pattern (21 bp):
AAAAATAAAAAAAAAACACAA
Found at i:26862764 original size:565 final size:560
Alignment explanation
Indices: 26861608--26862716 Score: 1625
Period size: 565 Copynumber: 2.0 Consensus size: 560
26861598 GAGGGCAGAG
* * *
26861608 AAAATGAAAAAAAGGAGCTGG-TTTTTTTTTTTTTTGAAATCGGTAAAAATGAACTTTTTTTCCT
1 AAAATGAAAAAAGGGAACTGGATTTTTTTTTTTTTTGAAATCGGTAAAAATAAACTTTTTTTCCT
* * *
26861672 AAGTTTTTGACCTATATAGCCTCTCAAAACGACGTCCTTTTGGGCTTAAGTCACAGGCGCCAAAA
66 AAGTTTTTGACCTATATAGCCCCTCAAAACGACGTCCTTTGGGGCTTAAGTCACAGGAGCCAAAA
* * * * * * *
26861737 CAGCGTTGTTTTGGAGACCTACCTGAAAACTAACCCGTCTGCCTTAATATCCACCTTTTTTTAAA
131 CAACGTTGTTTTGAAGACCTACCTGAAAACTAACCCATCCGCCTCAAGATCCACCTTTTTTAAAA
* * **
26861802 AAATGGTCTATTTGCACCCTTGGTCTTTTTGCTTTTTAAACATTTTTCAATATAGTCCTATTTAT
196 AAATAGTCTATTTGCACCCTTGGTCCTTCCGCTTTTTAAACATTTTTCAATATAGTCCTATTTAT
* * *
26861867 GTTATTTTCTTCTTTTTAAATTTACCCTATTTAATTTTAATTTTTTTATTTTGGTCCTTTTAAAC
261 GTTATTTTCTTCTTTTTAAATTTACCCCATTTAATTTTAATTTTTTTATTTTAGTCCTTTTAAAA
* * *
26861932 GATGCACATAAGAAAGTTTGGAATATTTTCCCGTTCAGTCCCTATTCCTTTTAGTGCGTTACATT
326 AATGCACATAAGAAAGTTTGGAATATTTT-CCG-TCAGTCCCTAGTCC-TCTAGT--GTTACATT
* *
26861997 TTAGTCCTTATTAGTCTATTTTTTTAAAATTTATGCCCATAATTTCATTTAAATTTCGATTTAAT
386 TTAGACCTTATTAGTCTATTTTTTTAAAATTTATGCCCATAATTTCATTTAAATCTCGATTTAAT
26862062 CCTTTATTTTTAATCTTTATTAAACTGTTTTCTTTTACATTTATCTACTTATTTATTTATTATTT
451 CCTTTATTTTTAATCTTTATTAAACTGTTTTCTTTTACATTTATCTACTTATTTATTTATTATTT
26862127 CTTTACTCTTTCTCATATATTTAAAAATTATTGTCTAAATGGGTA
516 CTTTACTCTTTCTCATATATTTAAAAATTATTGTCTAAATGGGTA
*
26862172 AAAATGAAAAAAGGGAACTGGATTTTTTTTTTTTTTGAAATGGGTAAAAATAAACTTTTTTTCCT
1 AAAATGAAAAAAGGGAACTGGATTTTTTTTTTTTTTGAAATCGGTAAAAATAAACTTTTTTTCCT
* * *
26862237 AAGTTTTTTACTTATATAGCCCCTCAAAACGATGTCCTTTGGGGCTTAAGTCACAGGAGCCAAAA
66 AAGTTTTTGACCTATATAGCCCCTCAAAACGACGTCCTTTGGGGCTTAAGTCACAGGAGCCAAAA
* * * * * *
26862302 CAACGTTGTTTTGAAGACCTACCTGAAAATTGACCCATCCGTCTCAGGATCCGCGTTTTTTAAAA
131 CAACGTTGTTTTGAAGACCTACCTGAAAACTAACCCATCCGCCTCAAGATCCACCTTTTTT-AAA
26862367 AAAATAGTCTATTTG-AGCCCTTGGTCCTTCCGC-TTTTAAACATTTTTCAATATAGTCCTATTT
195 AAAATAGTCTATTTGCA-CCCTTGGTCCTTCCGCTTTTTAAACATTTTTCAATATAGTCCTATTT
26862430 ATGTTATTTTCTTCTTTTTAAATTTACCCCATTTAATTTTAATTTTTTTATTTTAGTCCTTTTAA
259 ATGTTATTTTCTTCTTTTTAAATTTACCCCATTTAATTTTAATTTTTTTATTTTAGTCCTTTT-A
* * * *
26862495 AAAAATGCGCATAGGAAAGTTTGGGATATTTT-C-T-AG-CTC-AGTCC-CT-GT-TT-C-TTTT
323 AAAAATGCACATAAGAAAGTTTGGAATATTTTCCGTCAGTCCCTAGTCCTCTAGTGTTACATTTT
*
26862550 AGACCTTATTAGTCTA-TTTTTTAAAATTTATGCCCTTAATTTTCATTTAAATCTCGATTTAATC
388 AGACCTTATTAGTCTATTTTTTTAAAATTTATGCCCATAA-TTTCATTTAAATCTCGATTTAATC
*
26862614 CTTTATTTTTAATCTTTATTAAACTGTTTTCTTTTATATTTATCTACTTATTTATTTATTTAGTA
452 CTTTATTTTTAATCTTTATTAAACTGTTTTCTTTTACATTTATCTACTTATTTATTTA--T--TA
26862679 TTTCTTTACTCTTTCTCATATATTTAAAAAATTATTGT
513 TTTCTTTACTCTTTCTCATATATTT-AAAAATTATTGT
26862717 TTATATTCCT
Statistics
Matches: 494, Mismatches: 41, Indels: 28
0.88 0.07 0.05
Matches are distributed among these distances:
550 22 0.04
551 99 0.20
552 1 0.00
553 3 0.01
555 27 0.05
556 14 0.03
557 1 0.00
559 4 0.01
560 2 0.00
561 2 0.00
562 1 0.00
564 20 0.04
565 241 0.49
566 57 0.12
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (560 bp):
AAAATGAAAAAAGGGAACTGGATTTTTTTTTTTTTTGAAATCGGTAAAAATAAACTTTTTTTCCT
AAGTTTTTGACCTATATAGCCCCTCAAAACGACGTCCTTTGGGGCTTAAGTCACAGGAGCCAAAA
CAACGTTGTTTTGAAGACCTACCTGAAAACTAACCCATCCGCCTCAAGATCCACCTTTTTTAAAA
AAATAGTCTATTTGCACCCTTGGTCCTTCCGCTTTTTAAACATTTTTCAATATAGTCCTATTTAT
GTTATTTTCTTCTTTTTAAATTTACCCCATTTAATTTTAATTTTTTTATTTTAGTCCTTTTAAAA
AATGCACATAAGAAAGTTTGGAATATTTTCCGTCAGTCCCTAGTCCTCTAGTGTTACATTTTAGA
CCTTATTAGTCTATTTTTTTAAAATTTATGCCCATAATTTCATTTAAATCTCGATTTAATCCTTT
ATTTTTAATCTTTATTAAACTGTTTTCTTTTACATTTATCTACTTATTTATTTATTATTTCTTTA
CTCTTTCTCATATATTTAAAAATTATTGTCTAAATGGGTA
Found at i:26862842 original size:52 final size:54
Alignment explanation
Indices: 26862780--26862911 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 54
26862770 TATTTCTCAT
26862780 ATACTTAAATTTAATATTACTTATTT-TATTTA-T-TTATTCTTTTACGTTTTAA
1 ATACTTAAATTTAATATTACTTATTTCTATTTATTATTATTCTTTTA-GTTTTAA
* * *
26862832 ATACTTAAATTTAATATTATTTTTTTCCTATTTATTTATTATTCTTTTATTTTTAA
1 ATACTTAAATTTAATATTACTTATTT-CTATTTA-TTATTATTCTTTTAGTTTTAA
* *
26862888 ATATTTAAATTTGATATTACTTAT
1 ATACTTAAATTTAATATTACTTAT
26862912 ACTTCCTTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
52 24 0.35
54 6 0.09
56 27 0.40
57 11 0.16
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.61
Consensus pattern (54 bp):
ATACTTAAATTTAATATTACTTATTTCTATTTATTATTATTCTTTTAGTTTTAA
Found at i:26862941 original size:56 final size:55
Alignment explanation
Indices: 26862780--26862940 Score: 165
Period size: 56 Copynumber: 3.0 Consensus size: 55
26862770 TATTTCTCAT
* * *
26862780 ATACTTAAATTTAATATTACTTA-TT-TTATTTA--TTTATTCTTTTACGTTTTAA
1 ATACTTAAATTTAATATTATTTACTTCCTATTTATTTTTATTCTTTTA-TTTTTAA
**
26862832 ATACTTAAATTTAATATTATTTTTTTCCTATTTATTTATTATTCTTTTATTTTTAA
1 ATACTTAAATTTAATATTATTTACTTCCTATTTATTT-TTATTCTTTTATTTTTAA
* *
26862888 ATATTTAAATTTGATATTACTTATACTTCCT-TTTCA-TTTTATT-TTTTATTTTT
1 ATACTTAAATTTAATATTA-TT-TACTTCCTATTT-ATTTTTATTCTTTTATTTTT
26862941 TTCAAAGTTA
Statistics
Matches: 93, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
52 21 0.23
53 2 0.02
54 6 0.06
55 10 0.11
56 29 0.31
57 18 0.19
58 7 0.08
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.63
Consensus pattern (55 bp):
ATACTTAAATTTAATATTATTTACTTCCTATTTATTTTTATTCTTTTATTTTTAA
Found at i:26868697 original size:42 final size:42
Alignment explanation
Indices: 26868633--26868789 Score: 127
Period size: 42 Copynumber: 3.7 Consensus size: 42
26868623 TCGTGTTTAC
* * * *
26868633 TTTCCGTTTAGCTCTCACGAGCTTCTGTTCAACTCC-TATGAG
1 TTTCCATTCAGCTCTTATGAGCTTCTGTTCAAC-CCTTATGAG
* * * *
26868675 TTTCCATTCAGCTCTTTTGAGCTTCTTTTTAACCCTTATGGG
1 TTTCCATTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGAG
*** * * *
26868717 TTTTTGTTCAGCTCTTATGAGCTTCCGCTCAACCCTTATGGG
1 TTTCCATTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGAG
* * ** *
26868759 TTTCTATTTAGGACTTATGTGCTTCTGTTCA
1 TTTCCATTCAGCTCTTATGAGCTTCTGTTCA
26868790 GCTTTCTAGC
Statistics
Matches: 90, Mismatches: 24, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
41 2 0.02
42 88 0.98
ACGTcount: A:0.15, C:0.24, G:0.17, T:0.44
Consensus pattern (42 bp):
TTTCCATTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGAG
Found at i:26871269 original size:57 final size:57
Alignment explanation
Indices: 26871146--26871269 Score: 140
Period size: 57 Copynumber: 2.2 Consensus size: 57
26871136 AAATCGGATG
* * * * * **
26871146 ATAAAAAAAGATAAAATCAAATAATTAAGTGATAATTTTATAACTTCTCATAATTGG
1 ATAAAAAAAAAAAAAAGCAAATAATTAAATAATAATTTTATAACTTCTCATAATTAC
* * * * *
26871203 ATGACAAAAAAAAAAAGCTAATAATTAAATAATTATTTTATAACTTTTCATAATTAC
1 ATAAAAAAAAAAAAAAGCAAATAATTAAATAATAATTTTATAACTTCTCATAATTAC
26871260 ATAAAAAAAA
1 ATAAAAAAAA
26871270 GTAACATATA
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.55, C:0.07, G:0.06, T:0.32
Consensus pattern (57 bp):
ATAAAAAAAAAAAAAAGCAAATAATTAAATAATAATTTTATAACTTCTCATAATTAC
Found at i:26874830 original size:62 final size:58
Alignment explanation
Indices: 26874698--26874857 Score: 162
Period size: 63 Copynumber: 2.7 Consensus size: 58
26874688 AATTCTTTTT
* * *
26874698 AACCTTTAAAATTTTAAAAATTTTAATTATACCCCAAAAATTTTAGAATATCTTATTA
1 AACCTTTAAATTTTTAAAAATTTTAATTAGACCCCAAAAATTTTAGAATATCTCATTA
*
26874756 AACCTTTCAAATTTTTAAAAATTTTTAATTAGATCCTTCC-AAAATTTTTGTCAAT-TCTCATTA
1 AACCTTT-AAATTTTTAAAAA-TTTTAATTAGA-CC--CCAAAAATTTTAG--AATATCTCATTA
** * *
26874819 GCCCTTTAAATTTTTTGAAAATTTTAATTAAACCCCAAA
1 AACCTTTAAA-TTTTTAAAAATTTTAATTAGACCCCAAA
26874858 TCTTAACACC
Statistics
Matches: 85, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
58 7 0.08
59 14 0.16
60 12 0.14
61 4 0.05
62 22 0.26
63 23 0.27
64 3 0.04
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.42
Consensus pattern (58 bp):
AACCTTTAAATTTTTAAAAATTTTAATTAGACCCCAAAAATTTTAGAATATCTCATTA
Found at i:26876251 original size:29 final size:28
Alignment explanation
Indices: 26876193--26876251 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 28
26876183 CGACTTATTT
* * **
26876193 TATTTTAAAATTATTTAAAATATATTTA
1 TATTTTAAAATTATATAAAATAAACATA
*
26876221 TATTTTATAATATATATAAAATAAACATA
1 TATTTTAAAAT-TATATAAAATAAACATA
26876250 TA
1 TA
26876252 ACTATAGAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (28 bp):
TATTTTAAAATTATATAAAATAAACATA
Found at i:26877108 original size:30 final size:30
Alignment explanation
Indices: 26877074--26877133 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26877064 ACTTAACAAG
*
26877074 CAAATACCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
26877104 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
26877134 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:26884190 original size:10 final size:11
Alignment explanation
Indices: 26884161--26884194 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
26884151 GTCCTATTTA
26884161 ATTAAATAAATT
1 ATTAAA-AAATT
26884173 ATTAAAAAATT
1 ATTAAAAAATT
26884184 A-TAAAAAATT
1 ATTAAAAAATT
26884194 A
1 A
26884195 AGAAAAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.45
11 6 0.27
12 6 0.27
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
ATTAAAAAATT
Found at i:26884414 original size:29 final size:30
Alignment explanation
Indices: 26884372--26884452 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
26884362 GGGGAGAAGG
* **
26884372 TTAATGAAAATTTTCAAAATTTTAGGAG-T
1 TTAATTAAAATTTTCAAAATTTTAAAAGAT
*
26884401 TTAATTAAAATTTTCAAATCTTTTAAAAGAT
1 TTAATTAAAATTTTCAAA-ATTTTAAAAGAT
* *
26884432 CTAATTAAAATTTTTAAAATT
1 TTAATTAAAATTTTCAAAATT
26884453 GTACAAGTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 17 0.40
30 9 0.21
31 17 0.40
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.44
Consensus pattern (30 bp):
TTAATTAAAATTTTCAAAATTTTAAAAGAT
Found at i:26885020 original size:247 final size:248
Alignment explanation
Indices: 26884561--26885029 Score: 832
Period size: 247 Copynumber: 1.9 Consensus size: 248
26884551 AATAAAAATT
*
26884561 TATCACGTGTTAAGTTTTTATTGATAAATTTTTCTTTTTAAGTAAATTGAGACGAAAATTAATAG
1 TATCACGTGTTAAGTTTTTATTGATAAATTTTTCTTTTTAAGTAAACTGAGACGAAAATTAATAG
* *******
26884626 CTTAAATATTAAAGTGAAACATACCAATTTTTTTTTTAAATATAACAAAAAAAAAATTGGGTATA
66 CTTAAATATTAAAGTGAAACATACAAAAAAAAAATTTAAATATAACAAAAAAAAAATTGGGTATA
26884691 GCTCGGGAGTTAAATCGTAAACTAACCTCTCTCTTTTTTTATGTCTAAAATATTTTAATATTCGA
131 GCTCGGGAGTTAAATCGTAAACTAACCTCTCTCTTTTTTTATGTCTAAAATATTTTAATATTCGA
26884756 TAGCTATATTGAACATTGACTAAATTTTATTGATAAATTTTTTTATTGATAAA
196 TAGCTATATTGAACATTGACTAAATTTTATTGATAAATTTTTTTATTGATAAA
*
26884809 TATCACGTGTTAAGTTTTTATTGATAAATTTTTCTTTTTGAGTAAACTGAGACGAAAATTAATAG
1 TATCACGTGTTAAGTTTTTATTGATAAATTTTTCTTTTTAAGTAAACTGAGACGAAAATTAATAG
*
26884874 CTTAAATATTAAAGTGAAACATACAAAAAAAAAATTTAAATATCAC-AAAAAAAAATTGGGTATA
66 CTTAAATATTAAAGTGAAACATACAAAAAAAAAATTTAAATATAACAAAAAAAAAATTGGGTATA
26884938 GCTCGGGAGTTAAATCGTAAACTAACCTCTCTCTTTTTTTATGTCTAAAATATTTTAATATTCGA
131 GCTCGGGAGTTAAATCGTAAACTAACCTCTCTCTTTTTTTATGTCTAAAATATTTTAATATTCGA
26885003 TAGCTATATTGAACATTGACTAAATTT
196 TAGCTATATTGAACATTGACTAAATTT
26885030 AAAATCATAT
Statistics
Matches: 210, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
247 110 0.52
248 100 0.48
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (248 bp):
TATCACGTGTTAAGTTTTTATTGATAAATTTTTCTTTTTAAGTAAACTGAGACGAAAATTAATAG
CTTAAATATTAAAGTGAAACATACAAAAAAAAAATTTAAATATAACAAAAAAAAAATTGGGTATA
GCTCGGGAGTTAAATCGTAAACTAACCTCTCTCTTTTTTTATGTCTAAAATATTTTAATATTCGA
TAGCTATATTGAACATTGACTAAATTTTATTGATAAATTTTTTTATTGATAAA
Found at i:26888006 original size:34 final size:34
Alignment explanation
Indices: 26887962--26888026 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
26887952 ACCCTAGCCG
26887962 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
* *
26887996 CAGCATGTGCTCCCCTCTGCTCCACTACCGA
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGA
26888027 TTTCTGCCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.15, C:0.48, G:0.18, T:0.18
Consensus pattern (34 bp):
CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
Found at i:26889001 original size:3 final size:3
Alignment explanation
Indices: 26888995--26889049 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
26888985 TACTACTTTG
* * * *
26888995 TTA TTA TTA TTA TT- TT- TTT TTA TTA TTA TCA TTA TTA CTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26889041 TTA -TA TTA T
1 TTA TTA TTA T
26889050 ACCCATATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 6 0.14
3 37 0.86
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:26889353 original size:26 final size:24
Alignment explanation
Indices: 26889295--26889362 Score: 59
Period size: 28 Copynumber: 2.7 Consensus size: 24
26889285 TTCCTTTTTA
26889295 TATTTA-TTTACTTGTTACTTCAT
1 TATTTATTTTACTTGTTACTTCAT
*
26889318 TACTAATTATTTTAACTTGTTATTATCAT
1 TA-T--TTATTTT-ACTTGTTACT-TCAT
26889347 TATTTATTGTTA-TTGT
1 TATTTATT-TTACTTGT
26889363 AAATATATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
23 2 0.05
24 1 0.03
25 4 0.11
26 9 0.24
27 5 0.14
28 10 0.27
29 6 0.16
ACGTcount: A:0.25, C:0.09, G:0.06, T:0.60
Consensus pattern (24 bp):
TATTTATTTTACTTGTTACTTCAT
Found at i:26889425 original size:3 final size:3
Alignment explanation
Indices: 26889417--26889528 Score: 79
Period size: 3 Copynumber: 37.3 Consensus size: 3
26889407 TTTTCTTACC
* *
26889417 TTA TTA TTA TTA CTA TTA TCA TTA TTCA TTA CTCTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA -T-TA TTA TTA TTA TTA
* * * * *
26889465 CTA CTA TTA -AA TTA GTA TTA TTA -TA TT- TTA CTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
26889509 TGTA TTA CTA TTA TTT TTA T
1 T-TA TTA TTA TTA TTA TTA T
26889529 CGCTTTCGTC
Statistics
Matches: 85, Mismatches: 16, Indels: 16
0.73 0.14 0.14
Matches are distributed among these distances:
2 6 0.07
3 71 0.84
4 6 0.07
5 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:26890770 original size:88 final size:87
Alignment explanation
Indices: 26890653--26890829 Score: 291
Period size: 88 Copynumber: 2.0 Consensus size: 87
26890643 ATTGGTATTT
* * *
26890653 AAATTAAGTTTTTTATCACTTATCGTAAATGATTTATTTGAATCAATTTAAACTTTTAAATTAAA
1 AAATTAAGTTTTTTATCACTTACCGTAAATGATTTATTTGAATCAATTTAAACTATTAAATCAAA
26890718 TTTAGGTACTTAATTGTATAAA
66 TTTAGGTACTTAATTGTATAAA
* *
26890740 AAATTAAGTTTTTTGGTCACTTACCGTAAATGATTTATTTGAATCAATTTAAACTATTAAATCAG
1 AAATTAAGTTTTTT-ATCACTTACCGTAAATGATTTATTTGAATCAATTTAAACTATTAAATCAA
*
26890805 ATTTAGGTACTTTATTGTATAAA
65 ATTTAGGTACTTAATTGTATAAA
26890828 AA
1 AA
26890830 GAAAAAAACT
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 14 0.17
88 69 0.83
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (87 bp):
AAATTAAGTTTTTTATCACTTACCGTAAATGATTTATTTGAATCAATTTAAACTATTAAATCAAA
TTTAGGTACTTAATTGTATAAA
Found at i:26891341 original size:25 final size:25
Alignment explanation
Indices: 26891311--26891359 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
26891301 TAGGTTTTCG
26891311 TTTTACAAATCGAACACAAATAACA
1 TTTTACAAATCGAACACAAATAACA
* * *
26891336 TTTTACGATTCGAACACGAATAAC
1 TTTTACAAATCGAACACAAATAAC
26891360 TCGCAAGCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.27
Consensus pattern (25 bp):
TTTTACAAATCGAACACAAATAACA
Found at i:26894043 original size:18 final size:18
Alignment explanation
Indices: 26894022--26894091 Score: 52
Period size: 18 Copynumber: 3.9 Consensus size: 18
26894012 TTAATAAATT
26894022 TATTAAAATTATTTTTAA
1 TATTAAAATTATTTTTAA
* *
26894040 TATTAATATT-TTATATAA
1 TATTAAAATTATT-TTTAA
* * **
26894058 TTTTATAATTAAATTTAA
1 TATTAAAATTATTTTTAA
* *
26894076 TTTTAAAAATATTTTT
1 TATTAAAATTATTTTT
26894092 TATCATTTAA
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
17 2 0.05
18 36 0.95
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTAAAATTATTTTTAA
Found at i:26894443 original size:2 final size:2
Alignment explanation
Indices: 26894436--26894461 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26894426 ATATTTACAA
26894436 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26894462 TCAATCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26899238 original size:100 final size:100
Alignment explanation
Indices: 26899065--26899252 Score: 243
Period size: 100 Copynumber: 1.9 Consensus size: 100
26899055 AAACTAGCGT
* * * * * **
26899065 GCATTCATTTTAGGTAAGATTGTTATGTACGATAAAAGATAAATTTAGAGCAATATCTTCGTTGA
1 GCATTCATTTTAGGTAACATTGGTATGTACGATAAAAGACAAATTAAGAACAATATCTTCGGGGA
* *
26899130 ACATACTAAAAGAGAATCGATCCGCATCCATTTCA
66 ACATACTAAAAGACAATCAATCCGCATCCATTTCA
* *
26899165 GCATTCATTTTAGGTAACATTGGTATGTACGATACAAA-ACAAATTAAGAACAATATTTTTGGGG
1 GCATTCATTTTAGGTAACATTGGTATGTACGATA-AAAGACAAATTAAGAACAATATCTTCGGGG
**
26899229 GGCATACTAAAAGACAATCAATCC
65 AACATACTAAAAGACAATCAATCC
26899253 AAATTCATTT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
100 71 0.96
101 3 0.04
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (100 bp):
GCATTCATTTTAGGTAACATTGGTATGTACGATAAAAGACAAATTAAGAACAATATCTTCGGGGA
ACATACTAAAAGACAATCAATCCGCATCCATTTCA
Found at i:26903764 original size:44 final size:44
Alignment explanation
Indices: 26903704--26903815 Score: 127
Period size: 44 Copynumber: 2.5 Consensus size: 44
26903694 CAATATAGAC
* * *
26903704 AAAAATATATACATAATGTAATATTGAAAATATTTACATAATAT
1 AAAAATATATACATAATATAATATTAAAAATATATACATAATAT
*
26903748 AAAAATATATGA-ATAATATGATATTAAAAATATATACATAAAAATAT
1 AAAAATATAT-ACATAATATAATATTAAAAATATATACAT---AATAT
*
26903795 AATAAATATATATATAATATA
1 AA-AAATATATACATAATATA
26903816 TAAAATGTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
44 33 0.58
45 1 0.02
47 8 0.14
48 15 0.26
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (44 bp):
AAAAATATATACATAATATAATATTAAAAATATATACATAATAT
Found at i:26903788 original size:25 final size:24
Alignment explanation
Indices: 26903704--26903815 Score: 87
Period size: 25 Copynumber: 4.8 Consensus size: 24
26903694 CAATATAGAC
*
26903704 AAAAATATATACATAATGTAATATT
1 AAAAATATATACATAATATAATA-T
* *
26903729 GAAAATAT-T---T-ACATAATAT
1 AAAAATATATACATAATATAATAT
*
26903748 AAAAATATATGA-ATAATATGATATT
1 AAAAATATAT-ACATAATATAATA-T
26903773 AAAAATATATACATAA-A-AATAT
1 AAAAATATATACATAATATAATAT
*
26903795 AATAAATATATATATAATATA
1 AA-AAATATATACATAATATA
26903816 TAAAATGTAT
Statistics
Matches: 69, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
19 8 0.12
20 7 0.10
21 1 0.01
22 3 0.04
23 17 0.25
24 10 0.14
25 23 0.33
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (24 bp):
AAAAATATATACATAATATAATAT
Found at i:26903839 original size:9 final size:9
Alignment explanation
Indices: 26903791--26903839 Score: 52
Period size: 9 Copynumber: 5.9 Consensus size: 9
26903781 ATACATAAAA
26903791 ATATAATA-
1 ATATAATAT
26903799 A-AT-ATAT
1 ATATAATAT
26903806 ATATAATAT
1 ATATAATAT
* *
26903815 ATAAAATGT
1 ATATAATAT
26903824 ATA-AATAT
1 ATATAATAT
26903832 ATATAATA
1 ATATAATA
26903840 CATACACATT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
6 3 0.09
7 3 0.09
8 10 0.29
9 18 0.53
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (9 bp):
ATATAATAT
Found at i:26903855 original size:26 final size:26
Alignment explanation
Indices: 26903802--26903864 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
26903792 TATAATAAAT
* *
26903802 ATATATATAATATATAAAATGTATAA
1 ATATATATAATACATAAAATGTAGAA
*
26903828 ATATATATAATACATACACAT-TAGAA
1 ATATATATAATACATA-AAATGTAGAA
26903854 ATA-ATAATAAT
1 ATATAT-ATAAT
26903865 GTTACAAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 2 0.06
26 27 0.84
27 3 0.09
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (26 bp):
ATATATATAATACATAAAATGTAGAA
Found at i:26903940 original size:23 final size:23
Alignment explanation
Indices: 26903895--26903940 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26903885 AATACCTCAT
* *
26903895 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
26903918 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
26903941 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:26905623 original size:45 final size:45
Alignment explanation
Indices: 26905567--26905652 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
26905557 CGATATCTAC
*
26905567 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
26905612 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
26905653 TTGCTTCTTC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:26906101 original size:205 final size:204
Alignment explanation
Indices: 26905746--26906249 Score: 695
Period size: 205 Copynumber: 2.5 Consensus size: 204
26905736 AAATCTGCTT
* * *
26905746 CTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGATTTGCTTTAACTTAAGAAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGT-AGAAC
* * * * *
26905811 GTGAAAGCCAAATCAGCTACGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCTAAACCATCTT
65 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAGCACAAGGATACCAAACCATCTT
* * *
26905876 GGATCTGCTTCAGTATAAACATCTGAAGGTTG-GATCTGCTATGTGTCTACCCTCCATCGAAGTG
130 GGATCTGCTTCAGCATAAACATCTGAAGG-TGAGATCTGCTATGTATCTACCCTCCATCGAAGTA
26905940 GAGATACCAGA
194 GAGATACCAGA
* * *
26905951 TTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAAATTTGCTTCAACGTAGACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAGA-AC
*
26906016 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATACCAAACCATCTT
65 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAGCACAAGGATACCAAACCATCTT
* * * *
26906081 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
130 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACCCTCCATCGAAGTAG
*
26906146 AGATGCCAGA
195 AGATACCAGA
* * * * * * * *
26906156 CTTCGATTTATTCTCTGACACTACAGAGACGACAAATCATATTGGATTTGCTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAGA-AC
* *
26906221 GTGAAAACCAAATCAGCTATATCTTCGAT
65 GTGAAAGCCAAATCAGCTATGTCTTCGAT
26906250 CTGCCCCGAT
Statistics
Matches: 263, Mismatches: 34, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
204 5 0.02
205 258 0.98
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (204 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAGAACG
TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAGCACAAGGATACCAAACCATCTTG
GATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACCCTCCATCGAAGTAGA
GATACCAGA
Found at i:26918406 original size:26 final size:26
Alignment explanation
Indices: 26918356--26918407 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26918346 TATATGTATT
*
26918356 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* * *
26918382 AAAATGTATACGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
26918408 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:26918719 original size:11 final size:11
Alignment explanation
Indices: 26918705--26918803 Score: 65
Period size: 11 Copynumber: 8.5 Consensus size: 11
26918695 TATTTACATA
26918705 ATATAAAAAAT
1 ATATAAAAAAT
*
26918716 ATATGAATAATAT
1 ATAT-AA-AAAAT
*
26918729 GATATTAAAAAT
1 -ATATAAAAAAT
26918741 ATATACATAAAA-
1 ATATA-A-AAAAT
*
26918753 ATATAATAATAT
1 ATATAA-AAAAT
* *
26918765 ATATATATAAT
1 ATATAAAAAAT
*
26918776 ATATATAAAAT
1 ATATAAAAAAT
* *
26918787 GTATAAAATAT
1 ATATAAAAAAT
26918798 ATATAA
1 ATATAA
26918804 TACATACACA
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
11 39 0.57
12 17 0.25
13 9 0.13
14 4 0.06
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (11 bp):
ATATAAAAAAT
Found at i:26918726 original size:45 final size:45
Alignment explanation
Indices: 26918665--26918785 Score: 115
Period size: 45 Copynumber: 2.6 Consensus size: 45
26918655 CAATATAGAC
* * *
26918665 AAAAATATATACATAATGT-AGTATTGAAAATATTTACATAATATA
1 AAAAATATATACATAATATGA-TATTAAAAATATATACATAATATA
26918710 AAAAATATATGA-ATAATATGATATTAAAAATATATACATAAAAATATA
1 AAAAATATAT-ACATAATATGATATTAAAAATATATACAT---AATATA
* *
26918758 ATAATATATATATATAATAT-ATA-TAAAA
1 A-AAAATATATACATAATATGATATTAAAA
26918786 TGTATAAAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
45 32 0.49
46 2 0.03
47 5 0.08
48 11 0.17
49 15 0.23
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (45 bp):
AAAAATATATACATAATATGATATTAAAAATATATACATAATATA
Found at i:26918733 original size:25 final size:24
Alignment explanation
Indices: 26918665--26918785 Score: 92
Period size: 25 Copynumber: 5.1 Consensus size: 24
26918655 CAATATAGAC
* *
26918665 AAAAATATATACATAATGTAGTATT
1 AAAAATATATACATAATATA-TATA
* *
26918690 GAAAATATTTAC---ATA-ATATA
1 AAAAATATATACATAATATATATA
*
26918710 AAAAATATATGA-ATAATATGATATT
1 AAAAATATAT-ACATAATAT-ATATA
*
26918735 AAAAATATATACATAA-AAATATA
1 AAAAATATATACATAATATATATA
* *
26918758 ATAATATATATATATAATATATATA
1 A-AAAATATATACATAATATATATA
26918783 AAA
1 AAA
26918786 TGTATAAAAT
Statistics
Matches: 75, Mismatches: 12, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
20 11 0.15
21 2 0.03
22 2 0.03
23 8 0.11
24 17 0.23
25 35 0.47
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (24 bp):
AAAAATATATACATAATATATATA
Found at i:26918779 original size:9 final size:9
Alignment explanation
Indices: 26918753--26918805 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
26918743 ATACATAAAA
26918753 ATATAATA-
1 ATATAATAT
26918761 ATAT-ATAT
1 ATATAATAT
26918769 ATATAATAT
1 ATATAATAT
*
26918778 ATATAAAATGT
1 ATAT--AATAT
*
26918789 ATAAAATAT
1 ATATAATAT
26918798 ATATAATA
1 ATATAATA
26918806 CATACACATT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
7 3 0.08
8 8 0.22
9 19 0.51
11 7 0.19
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (9 bp):
ATATAATAT
Found at i:26918783 original size:22 final size:21
Alignment explanation
Indices: 26918738--26918805 Score: 75
Period size: 22 Copynumber: 3.2 Consensus size: 21
26918728 TGATATTAAA
* *
26918738 AATATATACATAAAAATATAAT
1 AATATATATATAAATATAT-AT
26918760 AATATATATATATAATATATAT
1 AATATATATATA-AATATATAT
* *
26918782 AAAATGTATA-AAATATATAT
1 AATATATATATAAATATATAT
26918802 AATA
1 AATA
26918806 CATACACATT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 12 0.30
21 1 0.03
22 21 0.52
23 6 0.15
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (21 bp):
AATATATATATAAATATATAT
Found at i:26918909 original size:23 final size:23
Alignment explanation
Indices: 26918864--26918909 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26918854 AATACCTCAT
* *
26918864 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
26918887 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
26918910 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:26924877 original size:42 final size:42
Alignment explanation
Indices: 26924818--26924921 Score: 102
Period size: 42 Copynumber: 2.5 Consensus size: 42
26924808 ATGATTTTTC
* * **
26924818 GTTTAACTC-TATCGGGTTTCGGTTCAGCTCTTTTGAGCTTTA
1 GTTTAACCCTTAT-GGGTTTCGGTTCAGCTCCTACGAGCTTTA
* * *
26924860 GTTTAACCCTTATGGGTTTCTGTTTAGCTCCTACGAGCTTTC
1 GTTTAACCCTTATGGGTTTCGGTTCAGCTCCTACGAGCTTTA
* * *
26924902 GATCAACCCTCATGGGTTTC
1 GTTTAACCCTTATGGGTTTC
26924922 CGTTTAGCAC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 48 0.94
43 3 0.06
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.41
Consensus pattern (42 bp):
GTTTAACCCTTATGGGTTTCGGTTCAGCTCCTACGAGCTTTA
Found at i:26927006 original size:43 final size:43
Alignment explanation
Indices: 26926942--26927023 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
26926932 TACTATGTGG
* *
26926942 AAATAACAAGATAACACGACATTATACATATGATAATATATGA
1 AAATAACAAGATAACACGACATTACACATATGACAATATATGA
* * * *
26926985 AAATAATAAGATGACATGACATTACATATATGACAATAT
1 AAATAACAAGATAACACGACATTACACATATGACAATAT
26927024 GTTTGTCACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.52, C:0.11, G:0.10, T:0.27
Consensus pattern (43 bp):
AAATAACAAGATAACACGACATTACACATATGACAATATATGA
Found at i:26927845 original size:32 final size:32
Alignment explanation
Indices: 26927773--26927849 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 32
26927763 TTGTCCAACT
* * *
26927773 CTAAACCCAAAAATGACTCGAACCAGTAATGAC
1 CTAAA-CCTAAAATGACTCGAACCAGGAAAGAC
* * * *
26927806 TTGAACCTAAAATGATTCGAACCTGGAAAGAC
1 CTAAACCTAAAATGACTCGAACCAGGAAAGAC
26927838 CTAAACCTAAAA
1 CTAAACCTAAAA
26927850 AGACCCAACT
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
32 32 0.91
33 3 0.09
ACGTcount: A:0.45, C:0.23, G:0.13, T:0.18
Consensus pattern (32 bp):
CTAAACCTAAAATGACTCGAACCAGGAAAGAC
Found at i:26931651 original size:18 final size:16
Alignment explanation
Indices: 26931628--26931662 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
26931618 TCACATCAAT
26931628 AATTAATTAATTTAAAAA
1 AATTAATT-A-TTAAAAA
26931646 AATTAATTATTAAAAA
1 AATTAATTATTAAAAA
26931662 A
1 A
26931663 TATTTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 1 0.06
18 8 0.47
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AATTAATTATTAAAAA
Found at i:26934192 original size:16 final size:16
Alignment explanation
Indices: 26934154--26934201 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
26934144 GATAAGAAAG
26934154 TTAGAAAGATGAAAAA
1 TTAGAAAGATGAAAAA
*
26934170 TTA-AAAGGTAGAAAAA
1 TTAGAAAGAT-GAAAAA
*
26934186 -TAGAAAGATGGAAAA
1 TTAGAAAGATGAAAAA
26934201 T
1 T
26934202 ATAGTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
15 12 0.46
16 14 0.54
ACGTcount: A:0.60, C:0.00, G:0.21, T:0.19
Consensus pattern (16 bp):
TTAGAAAGATGAAAAA
Found at i:26936515 original size:29 final size:30
Alignment explanation
Indices: 26936449--26936516 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
26936439 CATTTGAGAA
26936449 GCCCTTATTTGAGCACGTTCAAAAAGGTTTG
1 GCCCTTATTTGAGCACGTTC-AAAAGGTTTG
* *
26936480 GCTCTTATTTGAGCAC-TCTC-AAAGTTTTG
1 GCCCTTATTTGAGCACGT-TCAAAAGGTTTG
26936509 GCCCTTAT
1 GCCCTTAT
26936517 CGAAGCACTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 15 0.45
30 1 0.03
31 17 0.52
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (30 bp):
GCCCTTATTTGAGCACGTTCAAAAGGTTTG
Found at i:26938702 original size:24 final size:23
Alignment explanation
Indices: 26938675--26938721 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
26938665 TATAATTCTT
26938675 TATT-TTTTTTAAAGATTTATTTAG
1 TATTATTTTTTAAA-A-TTATTTAG
26938699 TATTAATTTTTTAAAATTATTTA
1 TATT-ATTTTTTAAAATTATTTA
26938722 AATATCTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 1 0.05
26 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (23 bp):
TATTATTTTTTAAAATTATTTAG
Found at i:26939001 original size:30 final size:29
Alignment explanation
Indices: 26938962--26939029 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
26938952 TCATATTGTT
**
26938962 TTATGTATATAT-TTT-CTTTTAAATCTA
1 TTATGTATATATATTTCCTTGCAAATCTA
26938989 TTTATGTATATATATTTCCTTGCAAATCTA
1 -TTATGTATATATATTTCCTTGCAAATCTA
26939019 TTATGTATATA
1 TTATGTATATA
26939030 GTTTATTCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 12 0.33
29 14 0.39
30 10 0.28
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.54
Consensus pattern (29 bp):
TTATGTATATATATTTCCTTGCAAATCTA
Found at i:26944400 original size:17 final size:18
Alignment explanation
Indices: 26944378--26944415 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
26944368 ATTTAGAAAT
*
26944378 AATATATAAA-TCTAAAA
1 AATATATAAATTATAAAA
26944395 AATATATAAATTATAAAA
1 AATATATAAATTATAAAA
26944413 AAT
1 AAT
26944416 TAAAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
AATATATAAATTATAAAA
Found at i:26944510 original size:22 final size:23
Alignment explanation
Indices: 26944485--26944531 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
26944475 ATATTACAAT
26944485 AATATTTTTTTA-AAAAGTT-TAA
1 AATATTTTTTTATAAAA-TTATAA
26944507 AATATTTTTTTATAAAATTATAA
1 AATATTTTTTTATAAAATTATAA
26944530 AA
1 AA
26944532 AGTATTTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
AATATTTTTTTATAAAATTATAA
Found at i:26956448 original size:109 final size:109
Alignment explanation
Indices: 26956335--26956538 Score: 291
Period size: 109 Copynumber: 1.9 Consensus size: 109
26956325 TCATTTTGTA
* * * *
26956335 TATTGAATCCTAAATTTGAGTCCCATCATATGTATTTATTATGTGTGGGTCTTCAATCCTAAAAT
1 TATTGAATCCTAAATTTGAGTCCCATCATATGTATCTATGATGTGAGAGTCTTCAATCCTAAAAT
* *
26956400 GTGTACATTTGCCATAGTTGAATTTTATCCTACGTTGTGTTTTG
66 GTGCACATTTGCCATAGTTGAACTTTATCCTACGTTGTGTTTTG
** * *
26956444 TATTGGTTCCTAAATTTGAGTCTCATCATATGTATCTATGATGTGAGAGTCTTCAATCCTAACAT
1 TATTGAATCCTAAATTTGAGTCCCATCATATGTATCTATGATGTGAGAGTCTTCAATCCTAAAAT
* * *
26956509 GTGCGCATTTGCCATGGTTGGACTTTATCC
66 GTGCACATTTGCCATAGTTGAACTTTATCC
26956539 AATTATTCAT
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
109 82 1.00
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.42
Consensus pattern (109 bp):
TATTGAATCCTAAATTTGAGTCCCATCATATGTATCTATGATGTGAGAGTCTTCAATCCTAAAAT
GTGCACATTTGCCATAGTTGAACTTTATCCTACGTTGTGTTTTG
Found at i:26960050 original size:6 final size:6
Alignment explanation
Indices: 26960009--26960033 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26959999 GGGAATCGGT
26960009 ATATAC ATATAC ATATAC ATATAC A
1 ATATAC ATATAC ATATAC ATATAC A
26960034 CACATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (6 bp):
ATATAC
Found at i:26960478 original size:3 final size:3
Alignment explanation
Indices: 26960470--26960517 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
26960460 AACACAAACT
26960470 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
26960518 ACCAAATGGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:26962651 original size:20 final size:20
Alignment explanation
Indices: 26962626--26962669 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
26962616 TTTTTTATAT
*
26962626 TTAAAGGTTTAATT-TAAAAA
1 TTAAA-GTTCAATTATAAAAA
26962646 TTAAAGTTCAATTGATAAAAA
1 TTAAAGTTCAATT-ATAAAAA
26962667 TTA
1 TTA
26962670 TTTAATTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
21 9 0.43
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (20 bp):
TTAAAGTTCAATTATAAAAA
Found at i:26962821 original size:61 final size:61
Alignment explanation
Indices: 26962746--26962868 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
26962736 GTAGAAACAT
26962746 TACATTCCTTAAATTAAAGTAGAGGGGACCAGTTGCAAAAGTTTGAAGAGTAGTGGGATTG
1 TACATTCCTTAAATTAAAGTAGAGGGGACCAGTTGCAAAAGTTTGAAGAGTAGTGGGATTG
*
26962807 TACATTCCTTAAATTAAAGTAGGGGGGACCAGTTGCAAAAGTTTGAAGAGTAGTGGGATTG
1 TACATTCCTTAAATTAAAGTAGAGGGGACCAGTTGCAAAAGTTTGAAGAGTAGTGGGATTG
26962868 T
1 T
26962869 GGGCAAAATT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28
Consensus pattern (61 bp):
TACATTCCTTAAATTAAAGTAGAGGGGACCAGTTGCAAAAGTTTGAAGAGTAGTGGGATTG
Found at i:26968521 original size:132 final size:132
Alignment explanation
Indices: 26968242--26968587 Score: 351
Period size: 132 Copynumber: 2.6 Consensus size: 132
26968232 AAGACGAGAT
** * * *
26968242 TCGATATTTGGTAATTCGCGGAATAGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCGA
1 TCGATATTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAA
* * * *
26968307 AATAATCGAATATCCCTTCAAACTTTCACTCATGCCTCTTAAAAAGTCTTTAAAAAGAAGGCAAA
66 AATAATCGAATATCCCTTCAAACTTCCACTAAGGCCTCTTAAAAAGTCTCTAAAAAGAAGGCAAA
*
26968372 GT
131 GC
* * * * *
26968374 TTGATATTTGGCAATTCGCGGAATCGTGCCCTAACTTGTTGCGTTGCAATTTCTCATTTGCTCAA
1 TCGATATTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAA
* * * *
26968439 AATAATCAAATATCCCTTCAAGA-TTCCATTAAGGTCT-TCTAAAAA-TCCTCTAAAACGAAGGC
66 AATAATCGAATATCCCTTCAA-ACTTCCACTAAGGCCTCT-TAAAAAGT-CTCTAAAAAGAAGGC
26968501 AATA-C
128 AA-AGC
* * * * * * ** *
26968506 TCGGTGTTTGACAATTCG-AGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAA
1 TCGATATTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAA
* *
26968570 AACAATCGAATATTCCTT
66 AATAATCGAATATCCCTT
26968588 TAGGTTTTCA
Statistics
Matches: 176, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
131 53 0.30
132 121 0.69
133 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (132 bp):
TCGATATTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAA
AATAATCGAATATCCCTTCAAACTTCCACTAAGGCCTCTTAAAAAGTCTCTAAAAAGAAGGCAAA
GC
Found at i:26969617 original size:163 final size:163
Alignment explanation
Indices: 26969347--26969665 Score: 611
Period size: 163 Copynumber: 2.0 Consensus size: 163
26969337 GAAACTACGC
26969347 TTTCGTGAGGTTTTTCACCTCTGCATGAGCTAGTGGATTGCTTCTAGGGTACATCCGTACCTATG
1 TTTCGTGAGGTTTTTCACCTCTGCATGAGCTAGTGGATTGCTTCTAGGGTACATCCGTACCTATG
26969412 ATTTCGTGAGATTTTCATCTCCGCATGGTCATAGGGAAATGTATCCCCCCGAACCGAACTCGATC
66 ATTTCGTGAGATTTTCATCTCCGCATGGTCATAGGGAAATGTATCCCCCCGAACCGAACTCGATC
26969477 TATATGAGCCTATAATGGGTGAAGATTGAGCGT
131 TATATGAGCCTATAATGGGTGAAGATTGAGCGT
*
26969510 TTTCGTGAGGTTTTTCACCTCTGCATGAGCTAGTGGATTGCTTCTGGGGTACATCCGTACCTATG
1 TTTCGTGAGGTTTTTCACCTCTGCATGAGCTAGTGGATTGCTTCTAGGGTACATCCGTACCTATG
* *
26969575 ATTTCGTGAGGTTTTCATCTCCGCATGGTCATAGGGAAATGTATCCTCCCGAACCGAACTCGATC
66 ATTTCGTGAGATTTTCATCTCCGCATGGTCATAGGGAAATGTATCCCCCCGAACCGAACTCGATC
26969640 TATATGAGCCTATAATGGGTGAAGAT
131 TATATGAGCCTATAATGGGTGAAGAT
26969666 GGAGGAATCT
Statistics
Matches: 153, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 153 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (163 bp):
TTTCGTGAGGTTTTTCACCTCTGCATGAGCTAGTGGATTGCTTCTAGGGTACATCCGTACCTATG
ATTTCGTGAGATTTTCATCTCCGCATGGTCATAGGGAAATGTATCCCCCCGAACCGAACTCGATC
TATATGAGCCTATAATGGGTGAAGATTGAGCGT
Found at i:26978508 original size:8 final size:8
Alignment explanation
Indices: 26978489--26978526 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
26978479 CTATATACTT
26978489 TAAAACATA
1 TAAAA-ATA
26978498 TAAAAATA
1 TAAAAATA
*
26978506 TAATAATA
1 TAAAAATA
26978514 -AAAAATA
1 TAAAAATA
26978521 TAAAAA
1 TAAAAA
26978527 AAATTACCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
7 6 0.23
8 15 0.58
9 5 0.19
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (8 bp):
TAAAAATA
Found at i:26979101 original size:3 final size:3
Alignment explanation
Indices: 26979093--26979172 Score: 151
Period size: 3 Copynumber: 26.3 Consensus size: 3
26979083 CTACTTTAAT
26979093 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26979141 TTA TTA TTA TTA TTA TTA TTA TTA TTA CTTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA T
26979173 AATGTGCCCA
Statistics
Matches: 76, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 73 0.96
4 3 0.04
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:26979626 original size:22 final size:22
Alignment explanation
Indices: 26979601--26979643 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26979591 TTAATCTTAA
*
26979601 TATATGTTTTATA-TATATTATG
1 TATAT-TTTAATATTATATTATG
26979623 TATATTTTAATATTATATTAT
1 TATATTTTAATATTATATTAT
26979644 ATGTACGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
TATATTTTAATATTATATTATG
Found at i:26979726 original size:21 final size:20
Alignment explanation
Indices: 26979692--26979730 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
26979682 TTTTGTACTA
*
26979692 TATTATTTTATTAGTTTTGC
1 TATTATTGTATTAGTTTTGC
26979712 TATTATTAGTATTAGTTTT
1 TATTATT-GTATTAGTTTT
26979731 AGTTTCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (20 bp):
TATTATTGTATTAGTTTTGC
Found at i:26992260 original size:230 final size:230
Alignment explanation
Indices: 26991853--26992818 Score: 1217
Period size: 230 Copynumber: 4.2 Consensus size: 230
26991843 TCGTTTCTGT
* *
26991853 TTTCAAAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACGTGTTGAGTCACTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAATCACTT
*
26991917 TCAATTTCTGTTTTTATGTCTATTTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC
66 TCAATTTCTGTTTTTATGTC--TGTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC
* * *
26991982 GGAGCACGCTGAGGTATTTTCAATTGTTGTTTGTCAAAAATTAACTCATGTTGCGGGAGGTGAGT
129 GGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTGAGT
26992047 TGAGCCTCGGAGCACGCCGAGGTATTTTCAAATTCTAC
194 TGAGCCTCGG-GCACGCCGAGGTATTTTCAAATTCTAC
26992085 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAATCACTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAATCACTT
*
26992149 TCAATTTCTGTTTTTATGTCTGTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTAAGCCTCGG
66 TCAATTTCTGTTTTTATGTCTGTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGG
26992214 GGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTGAGTTG
131 GGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTGAGTTG
26992279 AGCCTCGGGGCACG-CGAGGTATTTTCAAATTCTAC
196 AGCCTC-GGGCACGCCGAGGTATTTTCAAATTCTAC
*
26992314 TTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTTGGCTCACGTGTTGAATCACTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAATCACTT
* *
26992379 TCAATTTCTATTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAAGTGAGTTGAGCCTCG
66 TCAATTTCTGTTTTTATGTCTG-TTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCG
* *
26992444 GGGCACGTTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATATTGCGGGAGGTGAGTT
130 GGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTGAGTT
** * *
26992509 -AGGCCTCAGGGCACGCTAAGGTATTTTCAATTTCTGC
195 GA-GCCTC-GGGCACGCCGAGGTATTTTCAAATTCTAC
* * ** * * * * * * *
26992546 TTTTCAAAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGG--GACATGCTCAGGT-AA
1 -TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGA-ATCAC
* * **** ** *
26992608 TTGCAATTTC----TAT-TGTC---AAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTC
64 TTTCAATTTCTGTTTTTATGTCTGTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC
** * *
26992665 GGCTCACGTGCTGAGGTATTTTCAATTTCTGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAG
129 GGGGCAC--GCTGAGGTATTTTCAA--T-TG---CTGTTTGTCAAAAATCAACTCATGTTGCGGG
* * * * *
26992729 AGGTGAGTTAAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTAT
186 AGGTGAGTTGAGCCTC-GGGCACGCCGAGGTATTTTCAAATTCTAC
* * *
26992775 TTGTCAAAAAAACCAGCTCATATTGTGAGAGGTGAGTTGAGCCT
1 TT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
26992819 CAGGGCACGC
Statistics
Matches: 663, Mismatches: 53, Indels: 39
0.88 0.07 0.05
Matches are distributed among these distances:
222 39 0.06
224 15 0.02
226 5 0.01
227 4 0.01
228 2 0.00
229 119 0.18
230 207 0.31
231 173 0.26
232 59 0.09
233 40 0.06
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (230 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAATCACTT
TCAATTTCTGTTTTTATGTCTGTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGG
GGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTGAGTTG
AGCCTCGGGCACGCCGAGGTATTTTCAAATTCTAC
Found at i:26992606 original size:75 final size:75
Alignment explanation
Indices: 26991946--26992934 Score: 730
Period size: 73 Copynumber: 13.0 Consensus size: 75
26991936 CTATTTTTTT
* *
26991946 AAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC-GGAGCACGCTGAGGTATTTTCAATTGT-
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-GCACGCTGAGGTATTTTCAATT-TC
26992009 TGTTTGTC--AA
64 TGTTTGTCAAAA
* * * * * *
26992019 AAATTAACTCATGTTGCGGGAGGTGAGTTGAGCCTC-GGAGCACGCCGAGGTATTTTCAAATTCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-GCACGCTGAGGTATTTTCAATTTCT
**
26992083 ACTT-TC-AAA
65 GTTTGTCAAAA
* * * * * *
26992092 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACG-TGTTGAATCACTTTCAATT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-GCACGCTG-AG-GT-ATTTTCAATT
****
26992155 TCTGTTTTTATGTCTGTTTTT
62 TCTG---TT-TGTC---AAAA
* * * * *
26992176 AAATCAACTCATATTGCGGGAGGTGAGTTAAGCCTCGGGGCACGCTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
26992241 TTTGTC--AA
66 TTTGTCAAAA
* * * * * *
26992249 AAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGGGGCACGC-GAGGTATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
*
26992313 CTT-TCAAAA
66 TTTGTCAAAA
* * * * * * *
26992322 AAATCAACTCATATTGCGATAGGTGAGTTGAGCCT-TGGCTCACG-TGTTGAATCACTTTCAATT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-GCACGCTG-AG-GT-ATTTTCAATT
* ****
26992385 TCTATTTTTATGTCTGTTTTTT
62 TC---TGTT-TGTC----AAAA
* * * *
26992407 AAATCAACTCATATTGCGGGAAGTGAGTTGAGCCTCGGGGCACGTTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
26992472 TTTGTC--AA
66 TTTGTCAAAA
* * *
26992480 AAATCAACTCATATTGCGGGAGGTGAGTT-AGGCCTCAGGGCACGCTAAGGTATTTTCAATTTCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGA-GCCTCAGGGCACGCTGAGGTATTTTCAATTTCT
26992544 GCTTT-TCAAAA
65 G-TTTGTCAAAA
* * * * * * *
26992555 GAATCAACTCATATTACGAGAAATGAGTTGAGCCTC-GGGACATGCTCAGGTAATTGCAATTTCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGG-CACGCTGAGGTATTTTCAATTTCT
*
26992619 -ATTGTCAAAA
65 GTTTGTCAAAA
* *
26992629 AAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTATTTTCAATTT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-GCAC--GCTGAGGTATTTTCAATTT
****
26992693 CTGTTTCTGTTTGTCA
63 CTG-TT-TG-TCAAAA
* * * *
26992709 AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTA
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
26992774 TTTGTCAAAA
66 TTTGTCAAAA
* * * *
26992784 AAACCAGCTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
26992849 TTTGTCAAAAA
66 TTTGTC-AAAA
* * * * * **
26992860 AAACCAACTCATATTGTGAGAGGTTAG-TGAGCCTCAGGTCACATG-TCGAGGTATTTTCAAAAT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCAC--GCT-GAGGTATTTTCAATTT
*
26992923 CTGTTTTTCAAA
63 CTGTTTGTCAAA
26992935 TTATTTTTCA
Statistics
Matches: 747, Mismatches: 115, Indels: 105
0.77 0.12 0.11
Matches are distributed among these distances:
71 2 0.00
72 25 0.03
73 245 0.33
74 50 0.07
75 144 0.19
76 64 0.09
77 25 0.03
78 27 0.04
79 11 0.01
80 44 0.06
81 3 0.00
82 12 0.02
83 11 0.01
84 39 0.05
85 41 0.05
86 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
TTTGTCAAAA
Found at i:26992753 original size:229 final size:228
Alignment explanation
Indices: 26991946--26992928 Score: 660
Period size: 230 Copynumber: 4.3 Consensus size: 228
26991936 CTATTTTTTT
* * * *
26991946 AAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGAGCACG-CTGAGGTATTTTCAAT-TG-
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG-TCACGTGTGAGGTATTTTCAATCTGT
* * * * * **
26992008 -T-TGTTTGTCAAAAATTAACTCATGTTGCGGGAGGTGAGTTGAGCCTC-GGAGCACGCCGAGGT
65 TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAG-GCACGCTAAGGT
* * * * ** * *
26992070 ATTTTCAAATTCTACTT-TC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCT
129 ATTTTCAATTTCTATTTGTCAAAAAAACCAACTCATATTACGAGAAATGAGTTGAGCCTCAGG-G
** * * * * *****
26992132 CACG-TGTTGAATCACTTTCAATTTCTGTTTTTATGTCTGTTTTT
193 CACGCT-CAG-GT-AATTGCAATTTCTG---AT-TGTC--AAAAA
* * * * *
26992176 AAATCAACTCATATTGCGGGAGGTGAGTTAAGCCTCGGGGCACG-CTGAGGTATTTTCAAT-TG-
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGTCACGTGTGAGGTATTTTCAATCTGT
* * * ** *
26992238 --CTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGGGGCACGC-GAGGTA
65 TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCTAAGGTA
* * * * * ** * *
26992300 TTTTCAAATTCTACTT-TCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCT-TGGCTC
130 TTTTCAATTTCTATTTGTCAAAAAAACCAACTCATATTACGAGAAATGAGTTGAGCCTCAGG-GC
** * * * *****
26992363 ACG-TGTTGAATCACTTTCAATTTCT-ATTTTTATGTCTGTTTTTT
194 ACGCT-CAG-GT-AATTGCAATTTCTGA----T-TGTC---AAAAA
* *
26992407 AAATCAACTCATATTGCGGGAAGTGAGTTGAGCCTCGGGGCACGT-TGAGGTATTTTCAAT-TG-
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGTCACGTGTGAGGTATTTTCAATCTGT
* * *
26992469 --CTGTTTGTCAAAAATCAACTCATATTGCGGGAGGTGAGTTAGGCCTCAGGGCACGCTAAGGTA
65 TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCTAAGGTA
* * *
26992532 TTTTCAATTTCTGCTTT-TCAAAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTC-GGGA
130 TTTTCAATTTCT-ATTTGTCAAAAAAACCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGG-
*
26992595 CATGCTCAGGTAATTGCAATTTCT-ATTGTC-AAAA
193 CACGCTCAGGTAATTGCAATTTCTGATTGTCAAAAA
*
26992629 AAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG-TCACGTG-TGAGGTATTTTCAA--TC
*
26992694 TGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCTGAG
62 TGTTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCTAAG
* ** **
26992758 GTATTTTCAATTTCTATTTGTCAAAAAAACCAGCTCATATTGTGAGAGGTGAGTTGAGCCTCAGG
127 GTATTTTCAATTTCTATTTGTCAAAAAAACCAACTCATATTACGAGAAATGAGTTGAGCCTCAGG
* * * *
26992823 GCACGCTGAGGTATTTTCAATTTCTGTTTGTCAAAAA
192 GCACGCTCAGGTAATTGCAATTTCTGATTGTCAAAAA
* * * * *
26992860 AAACCAACTCATATTGTGAGAGGTTAG-TGAGCCTCAGGTCACATGTCGAGGTATTTTCAAAATC
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGTCACGTGT-GAGGTATTTTC--AATC
26992924 TGTTT
62 TGTTT
26992929 TTCAAATTAT
Statistics
Matches: 663, Mismatches: 58, Indels: 64
0.84 0.07 0.08
Matches are distributed among these distances:
221 2 0.00
222 39 0.06
224 14 0.02
226 5 0.01
227 3 0.00
228 3 0.00
229 141 0.21
230 232 0.35
231 160 0.24
232 19 0.03
233 44 0.07
234 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (228 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGTCACGTGTGAGGTATTTTCAATCTGTT
TCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCTAAGGTAT
TTTCAATTTCTATTTGTCAAAAAAACCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGGCAC
GCTCAGGTAATTGCAATTTCTGATTGTCAAAAA
Found at i:26992761 original size:461 final size:455
Alignment explanation
Indices: 26991853--26992818 Score: 1248
Period size: 461 Copynumber: 2.1 Consensus size: 455
26991843 TCGTTTCTGT
* *
26991853 TTTCAAAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACGTGTTGAGTCACTTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACGTGTTGAATCACTTT
* * *
26991918 CAATTTCTGTTTTTATGTCTATTTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCG
66 CAATTTCTATTTTTATGTCTAGTTTTTTAAATCAACTCATATTGCGGGAAGTGAGTTGAGCCTCG
* * *
26991983 GAGCACGCTGAGGTATTTTCAATTGTTGTTTGTCAAAAATTAACTCATGTTGCGGGAGGTGAGTT
131 GAGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATATTGCGGGAGGTGAGTT
* *
26992048 GAGCCTCGGAGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAATCAACTCATATTGCGAGA
196 GAGCCTCGGAGCACGCCAAGGTATTTTCAAATTCTACTTTCAAAAAATCAACTCATATTACGAGA
** * * * * * * * ****
26992113 GGTGAGTTGAGCCTTGGCTCACGTGTTGAATCACTTTCAATTTCTGTTTTTATGTCTGTTTTTAA
261 AATGAGTTGAGCCTCGGC-CACATGCTCAATCAATTGCAATTTC---TTATATGTC--TAAAAAA
** * *
26992178 ATCAACTCATATTGCGGGAGGTGAGTTAAGCCTCGGGGCACGCTGAGGTATTTTCAATTGCTGTT
320 ATCAACTCATATTGCAAGAAGTGAGTTAAGCCTCGGCGCACGCTGAGGTATTTTCAATTGCTGTT
* * * **
26992243 TGTCAAAAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGGGGCACGCGAGGTATTTTCAAA
385 TGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCGAGGTATTTTCAAA
26992308 TTCTAC
450 TTCTAC
*
26992314 TTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTTGGCTCACGTGTTGAATCACTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACGTGTTGAATCACTT
26992379 TCAATTTCTATTTTTATGTCT-GTTTTTTAAATCAACTCATATTGCGGGAAGTGAGTTGAGCCTC
65 TCAATTTCTATTTTTATGTCTAGTTTTTTAAATCAACTCATATTGCGGGAAGTGAGTTGAGCCTC
* *
26992443 GGGGCACGTTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATATTGCGGGAGGTGAGT
130 GGAGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATATTGCGGGAGGTGAGT
* * *
26992508 T-AGGCCTCAGG-GCACGCTAAGGTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTA
195 TGA-GCCTC-GGAGCACGCCAAGGTATTTTCAAATTCTAC-TTTCAAAA-AATCAACTCATATTA
* *
26992571 CGAGAAATGAGTTGAGCCTCGG-GACATGCTCAGGT-AATTGCAATTTC-TAT-TGTC-AAAAAA
256 CGAGAAATGAGTTGAGCCTCGGCCACATGCTCA-ATCAATTGCAATTTCTTATATGTCTAAAAAA
* *
26992631 ATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTCTG
320 ATCAACTCATATTGCAAGAAGTGAGTTAAGCCTCGGCGCAC--GCTGAGGTATTTTCAA--T-TG
26992696 TTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCTGAGGT
380 ---CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGC-GAGGT
* *
26992760 ATTTTCAATTTCTAT
441 ATTTTCAAATTCTAC
* * *
26992775 TTGTCAAAAAAACCAGCTCATATTGTGAGAGGTGAGTTGAGCCT
1 TT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
26992819 CAGGGCACGC
Statistics
Matches: 441, Mismatches: 48, Indels: 31
0.85 0.09 0.06
Matches are distributed among these distances:
453 37 0.08
455 16 0.04
456 4 0.01
457 3 0.01
458 2 0.00
460 42 0.10
461 219 0.50
462 85 0.19
463 33 0.07
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (455 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACGTGTTGAATCACTTT
CAATTTCTATTTTTATGTCTAGTTTTTTAAATCAACTCATATTGCGGGAAGTGAGTTGAGCCTCG
GAGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATATTGCGGGAGGTGAGTT
GAGCCTCGGAGCACGCCAAGGTATTTTCAAATTCTACTTTCAAAAAATCAACTCATATTACGAGA
AATGAGTTGAGCCTCGGCCACATGCTCAATCAATTGCAATTTCTTATATGTCTAAAAAAATCAAC
TCATATTGCAAGAAGTGAGTTAAGCCTCGGCGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAA
AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCGAGGTATTTTCAAATTCTAC
Found at i:26992934 original size:77 final size:75
Alignment explanation
Indices: 26992411--26992934 Score: 451
Period size: 75 Copynumber: 6.9 Consensus size: 75
26992401 TTTTTTAAAT
* * * * * *
26992411 CAACTCATATTGCGGGAAGTGAGTTGAGCCTCGGGGCACGTTGAGGTATTTTCAATTGCTGTTTG
1 CAACTCATATTGTGAGAGGTGAGTTGAGCCTC-AGGCACGCTGAGGTATTTTCAATTTCTGTTTG
*
26992476 TC---AAAAAT
65 TCAAAAAAAAC
* * *
26992484 CAACTCATATTGCGGGAGGTGAGTT-AGGCCTCAGGGCACGCTAAGGTATTTTCAATTTCTGCTT
1 CAACTCATATTGTGAGAGGTGAGTTGA-GCCTCA-GGCACGCTGAGGTATTTTCAATTTCTG-TT
* *
26992548 T-TC-AAAAGAAT
63 TGTCAAAAAAAAC
** ** * * * * * *
26992559 CAACTCATATTACGAGAAATGAGTTGAGCCTCGGGACATGCTCAGGTAATTGCAATTTCT-ATTG
1 CAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-CACGCTGAGGTATTTTCAATTTCTGTTTG
*
26992623 TC-AAAAAAAT
65 TCAAAAAAAAC
** *
26992633 CAACTCATATTGCAAGAAGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTATTTTCAATTTCTGT
1 CAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG--CAC--GCTGAGGTATTTTCAATTTCTG-
***** *
26992697 TTCTGTTTGTCAAAAT
61 TT-TGTCAAAAAAAAC
* * *
26992713 CAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTATTTG
1 CAACTCATATTGTGAGAGGTGAGTTGAGCCTC-AGGCACGCTGAGGTATTTTCAATTTCTGTTTG
26992778 TC-AAAAAAAC
65 TCAAAAAAAAC
*
26992788 CAGCTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTG
1 CAACTCATATTGTGAGAGGTGAGTTGAGCCTCA-GGCACGCTGAGGTATTTTCAATTTCTGTTTG
26992853 TCAAAAAAAAC
65 TCAAAAAAAAC
* **
26992864 CAACTCATATTGTGAGAGGTTAG-TGAGCCTCAGGTCACATG-TCGAGGTATTTTCAAAATCTGT
1 CAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-CAC--GCT-GAGGTATTTTCAATTTCTGT
*
26992927 TTTTCAAA
62 TTGTCAAA
26992935 TTATTTTTCA
Statistics
Matches: 380, Mismatches: 48, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
72 1 0.00
73 59 0.16
74 48 0.13
75 128 0.34
76 52 0.14
77 28 0.07
78 22 0.06
79 3 0.01
80 37 0.10
82 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (75 bp):
CAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTCAATTTCTGTTTGT
CAAAAAAAAC
Found at i:26993071 original size:178 final size:181
Alignment explanation
Indices: 26992836--26993160 Score: 421
Period size: 178 Copynumber: 1.8 Consensus size: 181
26992826 CGCTGAGGTA
* * * *
26992836 TTTTCAATTTCTGTTTGTCAAAAAAAACCAACTCATATTGTGAGAGGTTAGTGAGCCTCAGG-TC
1 TTTTCAATTTCCGTTTGTAAAAAAAAACCAACTCATATTGCGAGAGGTGAGTGAGCCT-AGGCTC
* *
26992900 ACATG-TCGAGGTATTTTCAAAATCTGTTTT-TCAA-AT-TATTTTTCAAA-ACCAACTGATATT
65 ACATGCT-GAGGTATTTTCAAAATATGTTTTCTCAATATATATTTTTCAAAGACCAACTCATATT
26992960 GCGAGAAGTGAGTTGAGCCTTGGCTCATGTGATGAGCTACTTTCAATTTCTGT
129 GCGAGAAGTGAGTTGAGCCTTGGCTCATGTGATGAGCTACTTTCAATTTCTGT
* * *
26993013 TTTTCAATTTCCGCTTTTTAAAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCCG-TTTGTAAAAAAAAACCAACTCATATTGCGAGAGGTGAG-TGAGCCTAGGCT
* ** * *
26993077 CACATGCTGAGGTATTTTTAATTTATGTTTTCTCAATTTATATTTTTCAAAGATCAACTCATATT
64 CACATGCTGAGGTATTTTCAAAATATGTTTTCTCAATATATATTTTTCAAAGACCAACTCATATT
* *
26993142 GTGAGAGGTGAGTTGAGCC
129 GCGAGAAGTGAGTTGAGCC
26993161 GTGGGTTCAC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
177 18 0.15
178 61 0.49
179 5 0.04
180 1 0.01
181 11 0.09
182 28 0.23
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (181 bp):
TTTTCAATTTCCGTTTGTAAAAAAAAACCAACTCATATTGCGAGAGGTGAGTGAGCCTAGGCTCA
CATGCTGAGGTATTTTCAAAATATGTTTTCTCAATATATATTTTTCAAAGACCAACTCATATTGC
GAGAAGTGAGTTGAGCCTTGGCTCATGTGATGAGCTACTTTCAATTTCTGT
Found at i:26993075 original size:92 final size:94
Alignment explanation
Indices: 26992944--26993115 Score: 249
Period size: 92 Copynumber: 1.9 Consensus size: 94
26992934 ATTATTTTTC
* **
26992944 AAAACCAACTGATATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTGATGAGCTACTTTCAATTT
1 AAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGATGAGCTACTTTCAATTT
*
26993009 CTGTTTT-TCAATTTCCGCTTTTTAAAAA
66 ATGTTTTCTCAATTTCCGCTTTTTAAAAA
* * * * *
26993037 AAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTTAATTT
1 AAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGATGAGCTACTTTCAATTT
26993101 ATGTTTTCTCAATTT
66 ATGTTTTCTCAATTT
26993116 ATATTTTTCA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 43 0.62
93 26 0.38
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (94 bp):
AAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGATGAGCTACTTTCAATTT
ATGTTTTCTCAATTTCCGCTTTTTAAAAA
Found at i:26993116 original size:15 final size:14
Alignment explanation
Indices: 26993089--26993126 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
26993079 CATGCTGAGG
26993089 TATTTTT-AATTTA
1 TATTTTTCAATTTA
*
26993102 TGTTTTCTCAATTTA
1 TATTTT-TCAATTTA
26993117 TATTTTTCAA
1 TATTTTTCAA
26993127 AGATCAACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 5 0.24
14 5 0.24
15 11 0.52
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (14 bp):
TATTTTTCAATTTA
Found at i:26993123 original size:92 final size:89
Alignment explanation
Indices: 26992944--26993160 Score: 238
Period size: 92 Copynumber: 2.4 Consensus size: 89
26992934 ATTATTTTTC
* * **
26992944 AAAACCAACTGATATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTGATGAGCTACTTTCAATTT
1 AAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTTGGCTCACATGATGAGCTACTTTCAATTT
* * *
26993009 CTGTTTTTCAATTTCCGCTTTTTAAAAA
65 ATGTTTTTCAATTTCAGATTTTT---AA
* * * *
26993037 AAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTTAATTTA
1 AAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTTGGCTCACATGATGAGCTACTTTCAATTTA
* *
26993102 TGTTTTCTCAATTT-ATATTTTTCA
66 TGTTTT-TCAATTTCAGATTTTTAA
* *
26993126 AAGATCAACTCATATTGTGAGAGGTGAGTTGAGCC
1 AAAATCAACTCATATTGCGAGA-GTGAGTTGAGCC
26993161 GTGGGTTCAC
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
89 21 0.20
90 12 0.11
92 48 0.45
93 26 0.24
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (89 bp):
AAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTTGGCTCACATGATGAGCTACTTTCAATTTA
TGTTTTTCAATTTCAGATTTTTAA
Found at i:26994341 original size:22 final size:22
Alignment explanation
Indices: 26994316--26994375 Score: 111
Period size: 22 Copynumber: 2.7 Consensus size: 22
26994306 AAAAATTACC
*
26994316 TATTTATGTTTAATATTATCAT
1 TATTTACGTTTAATATTATCAT
26994338 TATTTACGTTTAATATTATCAT
1 TATTTACGTTTAATATTATCAT
26994360 TATTTACGTTTAATAT
1 TATTTACGTTTAATAT
26994376 CGCATGCGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.57
Consensus pattern (22 bp):
TATTTACGTTTAATATTATCAT
Found at i:26996736 original size:44 final size:44
Alignment explanation
Indices: 26996673--26997243 Score: 707
Period size: 44 Copynumber: 13.0 Consensus size: 44
26996663 GGCAAATCCT
* *
26996673 GCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
26996717 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
26996761 ACAAATTTGGCGTCTCTGTATTGGCAGGGAGCAGATC-AAGGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAA-GATA
*
26996805 GCAGATTTGGTGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
26996849 ACAGATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
26996893 GTAGATTTGGCGTCTCTGTATTGGCAGAAAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
26996937 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC-AAGGATG
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAA-GATA
* * * * * * *
26996981 GTAGATTTGGCATCTCTGTGTTGACAAAAAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * *
26997025 GCAAATTTGGCGTCTCTGTATTGGTAGGGAGCAGATAGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
26997069 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATC-AAGGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAA-GATA
* * * *
26997113 GCAGATTTGGCATCTCTGTGTTGACAGATAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * **
26997157 ACGGATTTGGCGTCTCTGTATTGGCAGGGAATAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
** * * * *
26997201 GCAGATTTGGTATCTTTGTATTGTCAGTGAAGCAGATCAAAGA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAG-AGCAGATCGAAGA
26997244 CGGCGAATCT
Statistics
Matches: 448, Mismatches: 72, Indels: 13
0.84 0.14 0.02
Matches are distributed among these distances:
43 6 0.01
44 426 0.95
45 16 0.04
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (44 bp):
GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
Found at i:27000245 original size:132 final size:129
Alignment explanation
Indices: 26999937--27000308 Score: 372
Period size: 132 Copynumber: 2.8 Consensus size: 129
26999927 AAGTATTCAT
* *
26999937 TTAAAAATTCTTTAAAGCGAAGACGAGATTCGATATTTGGCAATTCGCGGAA-CAGTGCCCTAAC
1 TTAAAAA-TCTTTAAAACGAAGAC-AAATTCGATATTTGGCAATTCG-GGAATC-GTGCCCTAAC
* * * * * *
27000001 GTGTTGGGTTGCAATTTCGCGTTTGCTCGAAATAATCGAATATCCCTTCAAACTTTCACTCATGC
62 GTGTTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTCAAACTTCCACTCAGGC
27000066 CTC
127 CTC
* *
27000069 TTAAAAAGTCTTTAAAACGAAGGCAAAGTTTGATATTTGGCAATTCGTGGAATCGTGCCCTAACG
1 TTAAAAA-TCTTTAAAACGAAGACAAA-TTCGATATTTGGCAATTCG-GGAATCGTGCCCTAACG
* * * * *
27000134 TGTTAGGTTGCAATTTCTCGTTTGCTCAAAACAATCAAATATTCCTTCGAGA-TTCCATTCAGGT
63 TGTTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTC-AAACTTCCACTCAGGC
27000198 CT-
127 CTC
* * * * * * *
27000200 TCTAAAAATCCTTTAAAACGAAGACAATACTCGGTGTTTGACAATTTGGGAATCATGCCCTATCG
1 T-TAAAAAT-CTTTAAAACGAAGACAA-ATTCGATATTTGGCAATTCGGGAATCGTGCCCTAACG
* ** ** *
27000265 TGCTGGGTTGTGATTTCTTATTTGTTCAAAACAATCGAATATTC
63 TGTTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATTC
27000309 TTTTAGGTTT
Statistics
Matches: 200, Mismatches: 34, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
131 55 0.28
132 141 0.70
133 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (129 bp):
TTAAAAATCTTTAAAACGAAGACAAATTCGATATTTGGCAATTCGGGAATCGTGCCCTAACGTGT
TGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTCAAACTTCCACTCAGGCCTC
Found at i:27001424 original size:85 final size:85
Alignment explanation
Indices: 27001273--27001439 Score: 192
Period size: 85 Copynumber: 2.0 Consensus size: 85
27001263 TAGGACACGC
* * * * * *
27001273 TTTCACCATAGGTAAGATAATATCAGAGTTCATGTCAGAATCCAATTTCAGATAATCCTATCACA
1 TTTCACCATAAGTAAAATAATATCAGAGATAAGGTCAAAATCCAATTTCAGATAATCCTATCACA
*
27001338 TACCTACAACAATACAAATA
66 TACCTACAACAACACAAATA
* * * * * *
27001358 TTTCACCATAAGTAAAATAATGTCAGAGATAAGGTCAAAATCTAATTTC-GAATGATGCTGTGAC
1 TTTCACCATAAGTAAAATAATATCAGAGATAAGGTCAAAATCCAATTTCAG-ATAATCCTATCAC
*
27001422 ATACCTGCAACAACACAA
65 ATACCTACAACAACACAA
27001440 GTATGTAGAG
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
84 1 0.01
85 66 0.99
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (85 bp):
TTTCACCATAAGTAAAATAATATCAGAGATAAGGTCAAAATCCAATTTCAGATAATCCTATCACA
TACCTACAACAACACAAATA
Found at i:27012333 original size:50 final size:51
Alignment explanation
Indices: 27012256--27012384 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
27012246 GACCATGGCA
27012256 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
27012307 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
27012357 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
27012385 CTGATCGGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:27012399 original size:31 final size:31
Alignment explanation
Indices: 27012360--27012539 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
27012350 ACAAATGACA
*
27012360 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
27012391 GGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
27012422 AGTGAAAAGTGGTAGTTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
27012453 AGTGAAAAGTGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* *
27012484 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
27012515 AGTGAATAGTGGTCGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
27012540 AAGTGACAAG
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 2 0.01
31 132 0.98
32 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:27012632 original size:46 final size:46
Alignment explanation
Indices: 27012564--27012686 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 46
27012554 AAGTGATTTC
* * *
27012564 CGTATAAGACCATATCTAGGATATGGCATCGGTGTGATATATG-CT
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATT
* *
27012609 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATT
* * * *
27012656 CGTGTAAGACCATAGCTGAGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
27012687 ATATATGAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
45 1 0.02
46 63 0.95
47 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATT
Found at i:27012715 original size:42 final size:43
Alignment explanation
Indices: 27012657--27012771 Score: 162
Period size: 42 Copynumber: 2.7 Consensus size: 43
27012647 TATGTGATTC
*
27012657 GTGTAAGACCATAGCTGAGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGAGCTATGGCATCGATTATATGAAGAT
* *
27012699 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGAGCTATGGCATCGATTATATGAAGAT
* * *
27012741 GTGTAAGACAATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGAGCTATGGCATCGA
27012772 GAAAACGAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 62 0.97
43 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGAGCTATGGCATCGATTATATGAAGAT
Found at i:27013759 original size:15 final size:14
Alignment explanation
Indices: 27013722--27013806 Score: 61
Period size: 13 Copynumber: 6.2 Consensus size: 14
27013712 CCATTTCGAA
*
27013722 TGTCCACAC-GGCC
1 TGTCCACACGGGCG
*
27013735 TGT-GACACGGGCG
1 TGTCCACACGGGCG
*
27013748 TGTCTCACACGGCCG
1 TGTC-CACACGGGCG
* *
27013763 -GGCCACACGGGTG
1 TGTCCACACGGGCG
*
27013776 TGTCTCACACGGCCG
1 TGTC-CACACGGGCG
*
27013791 -GGCCACACGGGCG
1 TGTCCACACGGGCG
27013804 TGT
1 TGT
27013807 ATCCCTTGTT
Statistics
Matches: 53, Mismatches: 13, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
12 4 0.08
13 26 0.49
14 7 0.13
15 16 0.30
ACGTcount: A:0.14, C:0.35, G:0.35, T:0.15
Consensus pattern (14 bp):
TGTCCACACGGGCG
Found at i:27013778 original size:28 final size:28
Alignment explanation
Indices: 27013739--27013806 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
27013729 ACGGCCTGTG
27013739 ACACGGGCGTGTCTCACACGGCCGGGCC
1 ACACGGGCGTGTCTCACACGGCCGGGCC
*
27013767 ACACGGGTGTGTCTCACACGGCCGGGCC
1 ACACGGGCGTGTCTCACACGGCCGGGCC
27013795 ACACGGGCGTGT
1 ACACGGGCGTGT
27013807 ATCCCTTGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.15, C:0.35, G:0.37, T:0.13
Consensus pattern (28 bp):
ACACGGGCGTGTCTCACACGGCCGGGCC
Found at i:27015572 original size:40 final size:40
Alignment explanation
Indices: 27015528--27015674 Score: 170
Period size: 40 Copynumber: 3.7 Consensus size: 40
27015518 AGAGTATTCT
*
27015528 TTTTAGTAGATTCAGTAGGTATGGCTCGAAAACACATACG
1 TTTTAGTAGATTCAGTAGGTATGGCTCGAAAACGCATACG
* ** *
27015568 TTTTAGTAGATTCAATAGGCGTGGCTC-AAAAGCGCATATG
1 TTTTAGTAGATTCAGTAGGTATGGCTCGAAAA-CGCATACG
* * ** *
27015608 TTTCAGTAGATTCAGTAAGTACAGCTCGAAAGCGCATACG
1 TTTTAGTAGATTCAGTAGGTATGGCTCGAAAACGCATACG
* *
27015648 TTTTAATATATTCAGTAGGTATGGCTC
1 TTTTAGTAGATTCAGTAGGTATGGCTC
27015675 TTCTGAGCAC
Statistics
Matches: 85, Mismatches: 20, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 4 0.05
40 78 0.92
41 3 0.04
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (40 bp):
TTTTAGTAGATTCAGTAGGTATGGCTCGAAAACGCATACG
Found at i:27017957 original size:6 final size:6
Alignment explanation
Indices: 27017946--27017974 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
27017936 GGTTTCCAAA
27017946 AAATGG AAATGG AAATGG AAATGG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATG
27017975 ATCCATTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.31, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:27022460 original size:2 final size:2
Alignment explanation
Indices: 27022453--27022478 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
27022443 TTAACTTCAT
27022453 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
27022479 ACTATTGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:27025027 original size:14 final size:14
Alignment explanation
Indices: 27025008--27025048 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
27024998 TACAATATCC
27025008 AAATAATAACAATA
1 AAATAATAACAATA
*
27025022 AAATAATAGCAATA
1 AAATAATAACAATA
*
27025036 TAATAATAA-AATA
1 AAATAATAACAATA
27025049 GCAGCAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.24
Consensus pattern (14 bp):
AAATAATAACAATA
Found at i:27025054 original size:22 final size:22
Alignment explanation
Indices: 27025012--27025073 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
27025002 ATATCCAAAT
* **
27025012 AATAACAATAAAATAATAGCAA
1 AATAATAATAAAATAGCAGCAA
*
27025034 TATAATAATAAAATAGCAGCAA
1 AATAATAATAAAATAGCAGCAA
*
27025056 AACAAT-ATCAAAATAGCA
1 AATAATAAT-AAAATAGCA
27025074 ATGAAGTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 2 0.06
22 31 0.94
ACGTcount: A:0.63, C:0.11, G:0.06, T:0.19
Consensus pattern (22 bp):
AATAATAATAAAATAGCAGCAA
Found at i:27026240 original size:6 final size:6
Alignment explanation
Indices: 27026229--27026265 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
27026219 AAAAATCGTA
*
27026229 ATAATT ATAATT ATAATT ATAATT ATTAATT AAAATT
1 ATAATT ATAATT ATAATT ATAATT A-TAATT ATAATT
27026266 TTGACGTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
ATAATT
Found at i:27044473 original size:17 final size:17
Alignment explanation
Indices: 27044453--27044511 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
27044443 TTTCTTTTGA
27044453 AAAAGTTTT-TAATTTTT
1 AAAA-TTTTATAATTTTT
*
27044470 AAAATTTTATAGTTTTT
1 AAAATTTTATAATTTTT
*
27044487 -AATTTTTATGAATTTTT
1 AAAATTTTAT-AATTTTT
27044504 AATAATTT
1 AA-AATTT
27044512 ATTTAAGGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 12 0.35
17 17 0.50
18 1 0.03
19 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (17 bp):
AAAATTTTATAATTTTT
Found at i:27050422 original size:25 final size:24
Alignment explanation
Indices: 27050394--27050467 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
27050384 CTTATCGATG
*
27050394 TTCAACTCGTATGAACTTACCATTA
1 TTCAGCTCGTA-GAACTTACCATTA
* *
27050419 TTCAGCTCGGAAGAGCTTA-CAGTTA
1 TTCAGCTC-GTAGAACTTACCA-TTA
*
27050444 TTCAGCTTGTAGAAGCTTACCATT
1 TTCAGCTCGTAGAA-CTTACCATT
27050468 TACAGTTCGT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
24 6 0.15
25 29 0.74
26 4 0.10
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (24 bp):
TTCAGCTCGTAGAACTTACCATTA
Found at i:27052425 original size:13 final size:13
Alignment explanation
Indices: 27052400--27052434 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
27052390 GGTCTAAGGA
27052400 TAGGCCTGTGTGGT
1 TAGGCC-GTGTGGT
27052414 TAGGCCGTGTGGT
1 TAGGCCGTGTGGT
*
27052427 TAGCCCGT
1 TAGGCCGT
27052435 ACAAAGCATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.09, C:0.20, G:0.40, T:0.31
Consensus pattern (13 bp):
TAGGCCGTGTGGT
Found at i:27052962 original size:26 final size:26
Alignment explanation
Indices: 27052925--27053060 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
27052915 TGATACAAAT
*
27052925 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27052951 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27052977 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27053003 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27053029 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27053055 TGATAA
1 TGATAA
27053061 GAATATCATG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27058736 original size:51 final size:51
Alignment explanation
Indices: 27058676--27058783 Score: 207
Period size: 51 Copynumber: 2.1 Consensus size: 51
27058666 TGATACAAAT
27058676 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTCCA
*
27058727 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTCCA
27058778 TGATAA
1 TGATAA
27058784 AATCATGTCT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:27058738 original size:26 final size:25
Alignment explanation
Indices: 27058676--27058783 Score: 180
Period size: 25 Copynumber: 4.2 Consensus size: 25
27058666 TGATACAAAT
27058676 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
27058701 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
27058727 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
27058752 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
27058778 TGATAA
1 TGATAA
27058784 AATCATGTCT
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
25 44 0.56
26 34 0.44
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:27060293 original size:25 final size:26
Alignment explanation
Indices: 27060252--27060303 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
27060242 AATTACTGTT
27060252 TACCCCTAGGTGAAAATT-ACCGAAA
1 TACCCCTAGGTGAAAATTGACCGAAA
* *
27060277 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTG-AAAATTGACCGAAA
27060303 T
1 T
27060304 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGTGAAAATTGACCGAAA
Found at i:27063566 original size:35 final size:35
Alignment explanation
Indices: 27063522--27063688 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
27063512 TCCTCATTGA
** *
27063522 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
27063557 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
27063597 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
27063632 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
27063667 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
27063689 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:27063605 original size:75 final size:73
Alignment explanation
Indices: 27063517--27063688 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
27063507 GGTTTTCCTC
** * * **
27063517 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
27063581 TCAGTATGG
65 TCAGTATGG
*
27063590 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
27063655 CTCAGTATGG
64 CTCAGTATGG
27063665 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
27063689 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:27071063 original size:35 final size:35
Alignment explanation
Indices: 27071019--27071185 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
27071009 TCCTCATTGA
** *
27071019 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
27071054 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
27071094 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
27071129 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
27071164 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
27071186 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:27071102 original size:75 final size:73
Alignment explanation
Indices: 27071014--27071185 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
27071004 GGTTTTCCTC
** * * **
27071014 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
27071078 TCAGTATGG
65 TCAGTATGG
*
27071087 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
27071152 CTCAGTATGG
64 CTCAGTATGG
27071162 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
27071186 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:27073894 original size:10 final size:10
Alignment explanation
Indices: 27073875--27073934 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
27073865 TGAAATTCTA
27073875 AAAGATAAAT
1 AAAGATAAAT
27073885 ACAA-ATAAAT
1 A-AAGATAAAT
*
27073895 AAAGATAATT
1 AAAGATAAAT
27073905 AAAGATAAAT
1 AAAGATAAAT
27073915 AAAGATAAAT
1 AAAGATAAAT
27073925 GAAA-ATAAAT
1 -AAAGATAAAT
27073935 CCTAGAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:27074518 original size:21 final size:20
Alignment explanation
Indices: 27074485--27074524 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
27074475 CTTTGACGCA
*
27074485 GGGCACATGCCCGTGTGGAT
1 GGGCACACGCCCGTGTGGAT
27074505 GGGCAACACGCCCGTGTGGA
1 GGGC-ACACGCCCGTGTGGA
27074525 ACTTGAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.17, C:0.28, G:0.40, T:0.15
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAT
Found at i:27077752 original size:5 final size:5
Alignment explanation
Indices: 27077744--27077783 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
27077734 ATTATTAAGT
27077744 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
27077784 AAACATAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:27082372 original size:16 final size:18
Alignment explanation
Indices: 27082333--27082366 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27082323 TAAGTTTATA
27082333 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
27082350 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
27082367 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:27082791 original size:418 final size:426
Alignment explanation
Indices: 27082197--27082989 Score: 1110
Period size: 421 Copynumber: 1.9 Consensus size: 426
27082187 GAAATTCAAA
* *
27082197 AGGGTTAGGATAAAAATATTAAGATCGAAAAATAGGTTTAGGTAAAAAAATTTATACCAGTTTAA
1 AGGGTTAGGATAAAAATATTAAGACCGAAAAATAGGTCTAGGTAAAAAAATTTATACCAGTTTAA
* *
27082262 GATATGGCTTGGGCTCAGCTTGAACAATTAAGGCCCAAGACCAACCCGACCAACCCATATTTAAG
66 AATATGGCTTCGG--C-GCTTGAACAATTAAGGCCCAAGACCAACCCGACCAACCCATATTTAAG
* * * *
27082327 TTTATAATATTTTATATTATGTTATTTTTATATATTATGTAATTTAGAACATATT-AAAAA-AAT
128 TTTATAATACTTTATATTATGTTAATTTTATATATTATGTAATTTAGAACACATTAAAAAATAAA
* * *
27082390 C-TATACTAAATATATAATACTACTCTAATGTAAACATTAAAATAATGTTAAGATGACTATATGA
193 CATATACTAAATATATAATACTACTCTAATATAAACATTAAAATAATATTAACATGACTATATGA
* * * *
27082454 AAATTTTCAATAAAT-AAAAGATGTATAAAATTATTAA-AATAATATAATGTAAATA-TTTAAAA
258 AAATTTTCAATAAATAAAAAAATGTACAAAATTATTAAGAATAAAATAATATAAATACTTTAAAA
* * *
27082516 AA-TAAAAAA-AATAATATGGATAGACCTAAATGGGTTTCGGTTAGTTTTTTTTGCAAATATTAT
323 AATTAAAAAATAATAA-A-AG-TAGACCTAAATGAGTTTCGGTTAATTTTTTTTGCAAATATTAT
27082579 GGGTGGACCAACCCAGATTCAAAGGTACATTTGAAATTTGGG
385 GGGTGGACCAACCCAGATTCAAAGGTACATTTGAAATTTGGG
* * * *
27082621 AGGGTTTAGG-TAAAAATATTAAGCCCGAAAAATGGGTCTAGGT-AAAAAA-TTATGCCCGTTTA
1 AGGG-TTAGGATAAAAATATTAAGACCGAAAAATAGGTCTAGGTAAAAAAATTTATACCAGTTTA
* * * * * * *
27082683 AAATATGGC-TCGG-GCTTGATCAATTAAGGCCCAAG-CCTGACCTGGCCCGACCTATTTTTAAG
65 AAATATGGCTTCGGCGCTTGAACAATTAAGGCCCAAGACC-AACC-CGACCAACCCATATTTAAG
27082745 TTTATAATACTTTATATTATGTTAATTTTATATATTATGTAATTTAGAACACATTAAAAAATAAA
128 TTTATAATACTTTATATTATGTTAATTTTATATATTATGTAATTTAGAACACATTAAAAAATAAA
27082810 CATATACTAAATATATAATACTACTCTAATATAAACATTAAAATAATATTAACATGACTATATGA
193 CATATACTAAATATATAATACTACTCTAATATAAACATTAAAATAATATTAACATGACTATATGA
*
27082875 AAATTTTCAATAAATAAAAAAATGTACAAAATTATTAAGAATAAAATAATATTAATACTTTTAAA
258 AAATTTTCAATAAATAAAAAAATGTACAAAATTATTAAGAATAAAATAATATAAATAC-TTTAAA
* *
27082940 AAATTAAAAAATAATAAAAGTGGACCTAAATGAGTTTGGGTTAATTTTTT
322 AAATTAAAAAATAATAAAAGTAGACCTAAATGAGTTTCGGTTAATTTTTT
27082990 ACAAATATAG
Statistics
Matches: 325, Mismatches: 32, Indels: 24
0.85 0.08 0.06
Matches are distributed among these distances:
416 2 0.01
417 24 0.07
418 66 0.20
419 5 0.02
420 3 0.01
421 78 0.24
422 39 0.12
423 21 0.06
424 59 0.18
425 15 0.05
426 8 0.02
427 5 0.02
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (426 bp):
AGGGTTAGGATAAAAATATTAAGACCGAAAAATAGGTCTAGGTAAAAAAATTTATACCAGTTTAA
AATATGGCTTCGGCGCTTGAACAATTAAGGCCCAAGACCAACCCGACCAACCCATATTTAAGTTT
ATAATACTTTATATTATGTTAATTTTATATATTATGTAATTTAGAACACATTAAAAAATAAACAT
ATACTAAATATATAATACTACTCTAATATAAACATTAAAATAATATTAACATGACTATATGAAAA
TTTTCAATAAATAAAAAAATGTACAAAATTATTAAGAATAAAATAATATAAATACTTTAAAAAAT
TAAAAAATAATAAAAGTAGACCTAAATGAGTTTCGGTTAATTTTTTTTGCAAATATTATGGGTGG
ACCAACCCAGATTCAAAGGTACATTTGAAATTTGGG
Found at i:27083920 original size:14 final size:16
Alignment explanation
Indices: 27083888--27083921 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
27083878 TTCTCAACTA
27083888 TTAATAAATTTACATT
1 TTAATAAATTTACATT
27083904 TTAAT-AATTTA-ATT
1 TTAATAAATTTACATT
27083918 TTAA
1 TTAA
27083922 AAAGTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 6 0.33
16 5 0.28
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATAAATTTACATT
Found at i:27088099 original size:15 final size:16
Alignment explanation
Indices: 27088074--27088106 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
27088064 TAACAATATC
27088074 AATTAAACTAAAATTT
1 AATTAAACTAAAATTT
*
27088090 AATT-AACTAAATTTT
1 AATTAAACTAAAATTT
27088105 AA
1 AA
27088107 AATTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTAAACTAAAATTT
Found at i:27088758 original size:26 final size:27
Alignment explanation
Indices: 27088706--27088758 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
27088696 GGAATCAAGG
* *
27088706 ATTCAAAATGTTTGAAACTAATCTACT
1 ATTCAAAATGATTAAAACTAATCTACT
*
27088733 ATTCAAATTGATTAAAACTAAT-TACT
1 ATTCAAAATGATTAAAACTAATCTACT
27088759 TGCATTAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (27 bp):
ATTCAAAATGATTAAAACTAATCTACT
Found at i:27092195 original size:2 final size:2
Alignment explanation
Indices: 27092188--27092214 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
27092178 CATTGGTTCC
27092188 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
27092215 TTACAGGGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:27097248 original size:11 final size:11
Alignment explanation
Indices: 27097189--27097248 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
27097179 ACTTTTTTTG
*
27097189 TTATTTTTTTA
1 TTATTTTATTA
*
27097200 TTATTTTAGTA
1 TTATTTTATTA
*
27097211 TCATTTTACTT-
1 TTATTTTA-TTA
*
27097222 TTATGTTATTA
1 TTATTTTATTA
* *
27097233 CTATTTTATTG
1 TTATTTTATTA
27097244 TTATT
1 TTATT
27097249 ATTTGGATAT
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
10 2 0.05
11 34 0.92
12 1 0.03
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:27098838 original size:2 final size:2
Alignment explanation
Indices: 27098831--27098864 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
27098821 TGAAATTTAA
* *
27098831 AT AT AT AT AC AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27098865 TGTAGGTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:27100710 original size:2 final size:2
Alignment explanation
Indices: 27100705--27100742 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
27100695 ATCAAAAAAG
27100705 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27100743 GAAACAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27110985 original size:134 final size:134
Alignment explanation
Indices: 27110743--27110988 Score: 316
Period size: 135 Copynumber: 1.8 Consensus size: 134
27110733 TGTTGTATGC
* * *
27110743 TTGTTTAGTAGTGAATTTGAAATTATTAAAGCTTTTATGAATTTGACAAATTCAGGATTTTTATA
1 TTGTTTAGGACTGAATTTGAAATTATTAAAGCTTTTATGAATTTGACAAACTCAGGATTTTTATA
** *** *
27110808 CTTTTAGAAGACATTTTATATTGGAACCTAACTAATTTTTTCATATTTATTTCTTAAATCCACGG
66 AATTTAGAAGACATTTTATATCAAAACCTAACTAATTTATTCATATTTATTTCTTAAATCCACGG
27110873 ATTT
131 ATTT
*
27110877 TTGTTTAGGACTGAATTTGAAATTCTTAAAAG-TATTTATGAATTTGACAAACTCAGGATTTTTA
1 TTGTTTAGGACTGAATTTGAAATTATT-AAAGCT-TTTATGAATTTGACAAACTCAGGATTTTTA
** * * * *
27110941 TAAATTTCTAATATATTTTGTATCAAAACC-AATTAATTTATTCATATT
64 TAAATTTAGAAGACATTTTATATCAAAACCTAACTAATTTATTCATATT
27110989 GTATGCATTT
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
134 41 0.44
135 53 0.56
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (134 bp):
TTGTTTAGGACTGAATTTGAAATTATTAAAGCTTTTATGAATTTGACAAACTCAGGATTTTTATA
AATTTAGAAGACATTTTATATCAAAACCTAACTAATTTATTCATATTTATTTCTTAAATCCACGG
ATTT
Found at i:27122186 original size:30 final size:30
Alignment explanation
Indices: 27122150--27122209 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
27122140 TTAGAAAGGA
27122150 ATAAAGAAATCATGGATGAATCCAAGCGAT
1 ATAAAGAAATCATGGATGAATCCAAGCGAT
27122180 ATAAAGAAATCATGGATGAATCCAAGCGAT
1 ATAAAGAAATCATGGATGAATCCAAGCGAT
27122210 CTTTTTGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (30 bp):
ATAAAGAAATCATGGATGAATCCAAGCGAT
Found at i:27125663 original size:25 final size:25
Alignment explanation
Indices: 27125635--27125685 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
27125625 TAAGTAAAAA
27125635 AAGAAAATTACCACATTGAAAGTTG
1 AAGAAAATTACCACATTGAAAGTTG
27125660 AAGAAAATTACCACATTGAAAGTTG
1 AAGAAAATTACCACATTGAAAGTTG
27125685 A
1 A
27125686 CATTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.24
Consensus pattern (25 bp):
AAGAAAATTACCACATTGAAAGTTG
Found at i:27126949 original size:31 final size:30
Alignment explanation
Indices: 27126914--27126978 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
27126904 GACTGAATTT
*
27126914 TAAAATCTGAAAAGTAGAGAGACTAAATTCC
1 TAAAATAT-AAAAGTAGAGAGACTAAATTCC
*
27126945 TAAAA-ATAAAAGTATAGAGACTAAATTCC
1 TAAAATATAAAAGTAGAGAGACTAAATTCC
27126974 -AAAAT
1 TAAAAT
27126979 TTTAAAGAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 4 0.13
29 21 0.68
30 1 0.03
31 5 0.16
ACGTcount: A:0.54, C:0.11, G:0.12, T:0.23
Consensus pattern (30 bp):
TAAAATATAAAAGTAGAGAGACTAAATTCC
Done.