Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 108 of 410
Found at i:31889222 original size:73 final size:74
Alignment explanation
Indices: 31889103--31889241 Score: 253
Period size: 73 Copynumber: 1.9 Consensus size: 74
31889093 GGAAATATAT
*
31889103 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGA-CCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
31889167 GAGATTATG
66 GAGATTATG
*
31889176 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
31889241 G
66 G
31889242 GGACTATTCG
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
73 47 0.75
74 16 0.25
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (74 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
GAGATTATG
Found at i:31890950 original size:40 final size:40
Alignment explanation
Indices: 31890516--31890952 Score: 734
Period size: 40 Copynumber: 11.0 Consensus size: 40
31890506 TTGAGAGATA
* *
31890516 TATAGCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31890555 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31890595 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31890635 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31890675 TATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
31890715 TATATCCAGGCTAAGTCCCGTAGAGCATTCGTGCTGATAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
31890755 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31890795 TATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
31890835 TATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
31890874 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
31890914 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
31890953 ATGTGCATTC
Statistics
Matches: 379, Mismatches: 17, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
39 54 0.14
40 325 0.86
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:31892756 original size:80 final size:80
Alignment explanation
Indices: 31892611--31892812 Score: 230
Period size: 80 Copynumber: 2.5 Consensus size: 80
31892601 GAATACAACC
* * *
31892611 GATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAATGCC
1 GATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCC
*
31892675 TTCGGGTATTAGCCCG
66 TT-GGGTATTAACCCG
* * *
31892691 GATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAATTGC
1 GATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAATGC
*
31892754 CTTGGGTCTTAACCCG
65 CTTGGGTATTAACCCG
** * ** * *
31892770 GATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
31892813 ATCATTCAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 46 0.44
80 54 0.52
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (80 bp):
GATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCC
TTGGGTATTAACCCG
Found at i:31892814 original size:40 final size:40
Alignment explanation
Indices: 31892611--31892814 Score: 207
Period size: 40 Copynumber: 5.1 Consensus size: 40
31892601 GAATACAACC
* *
31892611 GATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCCG
* * * *
31892651 GATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCCCG
1 GATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
* * *
31892691 GATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
* * * *
31892731 GATGTAGTC-ACTAGCACAATTGCCTT-GGGTCTTAACCCG
1 GATATA-ACAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
** * * *
31892770 GATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCG
1 GATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
31892810 GATAT
1 GATAT
31892815 CATTCAATTG
Statistics
Matches: 136, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 31 0.23
40 104 0.76
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
GATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
Found at i:31897847 original size:47 final size:48
Alignment explanation
Indices: 31897721--31897956 Score: 376
Period size: 47 Copynumber: 5.0 Consensus size: 48
31897711 CAAGATAAAT
* * * *
31897721 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTG-AATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
31897768 ATATGTATA--T-GTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
31897813 ATATGTATATGT-GTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
31897860 ATATGTAT-TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
31897907 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
31897955 AT
1 AT
31897957 GTGTGTATAT
Statistics
Matches: 177, Mismatches: 7, Indels: 9
0.92 0.04 0.05
Matches are distributed among these distances:
44 21 0.12
45 21 0.12
46 3 0.02
47 92 0.52
48 40 0.23
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:31897987 original size:142 final size:138
Alignment explanation
Indices: 31897721--31897991 Score: 377
Period size: 142 Copynumber: 1.9 Consensus size: 138
31897711 CAAGATAAAT
31897721 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAATATATATGAGATATGTATATGTAAAGCC
1 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAATATATATGAGATATGTATATGTAAAGCC
* * *
31897786 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGTAAAGCCGAATGGCTAATGTGAAAT
66 GAATGGCTAGTGTGAAATATGTAGGAGATATGTATATGTGT-AAGCCGAATGCCAAATGTGAAAT
31897851 ATGTATGAG
130 ATGTATGAG
* * *
31897860 ATATGTAT-TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTG-AATATATATGAGATATGTATA--T-GTAA
* *
31897924 AGCCGAATGGCTAGTGTGAAATATGTAGGAGATGTGTGTATAT-TGT-GGCCGAATGACCAAATG
62 AGCCGAATGGCTAGTGTGAAATATGTAGGAGA--TATGTATATGTGTAAGCCGAATG-CCAAATG
31897987 TGAAA
124 TGAAA
31897992 GGTGTGTATT
Statistics
Matches: 117, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
138 25 0.21
139 27 0.23
141 9 0.08
142 45 0.38
143 3 0.03
144 8 0.07
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (138 bp):
ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAATATATATGAGATATGTATATGTAAAGCC
GAATGGCTAGTGTGAAATATGTAGGAGATATGTATATGTGTAAGCCGAATGCCAAATGTGAAATA
TGTATGAG
Found at i:31898151 original size:37 final size:37
Alignment explanation
Indices: 31898101--31898199 Score: 180
Period size: 37 Copynumber: 2.7 Consensus size: 37
31898091 ATATATTCCA
31898101 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
31898138 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
31898175 GGTAAGACCCGATAACTACGTGTGG
1 GGTAAGACCCGATGACTACGTGTGG
31898200 GGACTATTCG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:31899527 original size:40 final size:40
Alignment explanation
Indices: 31899474--31900027 Score: 896
Period size: 40 Copynumber: 13.7 Consensus size: 40
31899464 TTGAGAGTTA
* * *
31899474 TATAGCCGGGCTAAGTCCCGAACAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31899514 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
31899554 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31899594 TATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31899634 TATATCCGGGCTAAGTCCAGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31899674 TATATACGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
31899714 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31899754 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31899794 TATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31899834 TATATCCGGCTAAGTGCGGATAAGTCCCGAAGAGCATTCGTGCTGTTG-
1 TATATCC-G----G-GC---TAAGTCCCGAAGAGCATTCGTGCTGGTGT
31899882 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
31899922 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
31899962 TATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
31900001 TATATCCGGGCTAGGTCCCGAAGAGCA
1 TATATCCGGGCTAAGTCCCGAAGAGCA
31900028 ATCATACTGG
Statistics
Matches: 485, Mismatches: 18, Indels: 22
0.92 0.03 0.04
Matches are distributed among these distances:
39 65 0.13
40 378 0.78
41 1 0.00
42 2 0.00
43 1 0.00
45 1 0.00
46 2 0.00
47 1 0.00
48 7 0.01
49 27 0.06
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:31900039 original size:79 final size:79
Alignment explanation
Indices: 31899854--31900027 Score: 314
Period size: 79 Copynumber: 2.2 Consensus size: 79
31899844 TAAGTGCGGA
*
31899854 TAAGTCCCGAAGAGCATTCGTGCTGTTGTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TAAGTCCCGAAGAGCATTCGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
31899919 TGTTATATCCGGGC
66 TGTTATATCCGGGC
31899933 TAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTG
1 TAAGTCCCGAAGAGCATTCGTGCTGGTG-TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
31899997 GTGTTATATCCGGGC
65 GTGTTATATCCGGGC
*
31900012 TAGGTCCCGAAGAGCA
1 TAAGTCCCGAAGAGCA
31900028 ATCATACTGG
Statistics
Matches: 92, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
79 76 0.83
80 16 0.17
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGAGCATTCGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
TGTTATATCCGGGC
Found at i:31900253 original size:25 final size:25
Alignment explanation
Indices: 31900203--31900253 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
31900193 TGTGTAACAA
* *
31900203 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
31900228 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
31900253 C
1 C
31900254 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:31903530 original size:48 final size:48
Alignment explanation
Indices: 31903459--31903796 Score: 545
Period size: 48 Copynumber: 7.0 Consensus size: 48
31903449 CAAGATAAAT
* * *
31903459 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
31903507 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAG
* *
31903555 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTTTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
31903603 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAG
*
31903651 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
* * *
31903699 ATATGTATGTGTGGTAAAGTCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
* *
31903747 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
31903795 AT
1 AT
31903797 GTGTGTATAT
Statistics
Matches: 269, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
48 268 1.00
49 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
Found at i:31903987 original size:37 final size:37
Alignment explanation
Indices: 31903937--31904039 Score: 197
Period size: 37 Copynumber: 2.8 Consensus size: 37
31903927 GGAAATATAT
31903937 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
31903974 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
31904011 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
31904040 GGACTATTCA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:31914677 original size:22 final size:22
Alignment explanation
Indices: 31914635--31914677 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
31914625 AATTATCAAA
*
31914635 AATCGAGCTGAACACGTACCTT
1 AATCGAGCTGAACAAGTACCTT
*
31914657 AATCTAGCTTGAACAAG-ACCT
1 AATCGAGC-TGAACAAGTACCT
31914678 AACCCTAGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (22 bp):
AATCGAGCTGAACAAGTACCTT
Found at i:31919256 original size:40 final size:39
Alignment explanation
Indices: 31919128--31919287 Score: 162
Period size: 39 Copynumber: 4.1 Consensus size: 39
31919118 TTCAATCACT
* * * * *
31919128 AGCACAAAGCCTTCGGGACTTTAAACCCAGATATATTTCC
1 AGCACATAGCCTGC-GGACCTTAAACCCGGATATAATTCC
* * *
31919168 AGCATATAGCCTGCGAACCTT-AACTCCGGATATAATTCT
1 AGCACATAGCCTGCGGACCTTAAAC-CCGGATATAATTCC
* *
31919207 AGCATATAGCCTGCGGGTA-TTTAAACCCGGATATAATTCC
1 AGCACATAGCCTGC-GG-ACCTTAAACCCGGATATAATTCC
**
31919247 AGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCTTAAACCCGGATATAATTCC
31919286 AG
1 AG
31919288 ATATCATGCA
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
38 4 0.04
39 52 0.52
40 40 0.40
41 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCTTAAACCCGGATATAATTCC
Found at i:31921987 original size:40 final size:40
Alignment explanation
Indices: 31921938--31922185 Score: 142
Period size: 40 Copynumber: 6.2 Consensus size: 40
31921928 TCGAATTTAA
* * *
31921938 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACA-TAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGA-ATTAGC
* * *
31921978 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
* ** * * *
31922018 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
* * * ** * * *
31922058 CCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
* * * ** * * *
31922098 CCGGTTTTGGTAACTCGTACAAATGCCTTCGAGAATT-GAC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAG-C
* * ** *
31922138 CCGGATTTAGTC-ACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAG-CGAC-TCGCACAATTGCCTTCGGGAATTAGC
31922179 CCGGATA
1 CCGGATA
31922186 CCATTCGAAT
Statistics
Matches: 175, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 148 0.85
41 25 0.14
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
Found at i:31922063 original size:80 final size:79
Alignment explanation
Indices: 31921964--31922184 Score: 253
Period size: 80 Copynumber: 2.7 Consensus size: 79
31921954 GCTCGATTGT
* * * * *
31921964 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
31922029 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * * * *
31922044 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
1 CTTCGGGACTTAACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
*
31922109 AACTCGTACAAATGC
65 AACTCGCACAAATGC
* * * * * *
31922124 CTTCGAGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
31922185 ACCATTCGAA
Statistics
Matches: 117, Mismatches: 22, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
80 86 0.74
81 31 0.26
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (79 bp):
CTTCGGGACTTAACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
ACTCGCACAAATGC
Found at i:31932818 original size:24 final size:24
Alignment explanation
Indices: 31932479--31932816 Score: 606
Period size: 24 Copynumber: 14.1 Consensus size: 24
31932469 GCAAAGACCA
31932479 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
31932503 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
31932527 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
31932551 TATGGCACTAT-TGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
31932574 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
31932598 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
31932622 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
31932646 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
31932670 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
31932694 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
31932718 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
31932742 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
31932766 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
31932790 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
31932814 TAT
1 TAT
31932817 AGTCACATTC
Statistics
Matches: 303, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
23 22 0.07
24 281 0.93
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:31940977 original size:68 final size:70
Alignment explanation
Indices: 31940905--31941102 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
31940895 ACACCCTGTA
* * * *
31940905 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
31940967 ATAAAT
65 ATAAAT
*
31940973 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
31941038 ATAAAT
65 ATAAAT
*
31941044 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
31941103 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:31941016 original size:41 final size:41
Alignment explanation
Indices: 31940971--31941088 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
31940961 TGAAAGATAA
31940971 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
31941012 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
31941042 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
31941083 ATGTAG
1 ATGTAG
31941089 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:31941028 original size:71 final size:71
Alignment explanation
Indices: 31940939--31941102 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
31940929 GAGATGTATC
31940939 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
31941004 AGGACA
66 AGGACA
31941010 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
31941075 AGGACA
66 AGGACA
31941081 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
31941103 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:31948507 original size:68 final size:70
Alignment explanation
Indices: 31948435--31948632 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
31948425 ACACCCTGTA
* * * *
31948435 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
31948497 ATAAAT
65 ATAAAT
*
31948503 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
31948568 ATAAAT
65 ATAAAT
*
31948574 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
31948633 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:31948546 original size:41 final size:41
Alignment explanation
Indices: 31948501--31948618 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
31948491 TGAAAGATAA
31948501 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
31948542 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
31948572 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
31948613 ATGTAG
1 ATGTAG
31948619 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:31948558 original size:71 final size:71
Alignment explanation
Indices: 31948469--31948632 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
31948459 GAGATGTATC
31948469 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
31948534 AGGACA
66 AGGACA
31948540 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
31948605 AGGACA
66 AGGACA
31948611 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
31948633 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:31955582 original size:40 final size:39
Alignment explanation
Indices: 31955477--31955625 Score: 169
Period size: 39 Copynumber: 3.8 Consensus size: 39
31955467 AAAGCCTTCG
* *
31955477 GGACTTTAAACCCGGATATATTTCCAGCATATAGCCTAC
1 GGACTTTAAACCCGGATATAATTCCAGCATATAGCCTGC
*
31955516 GGACCTT-AACTCCGGATATAATTCCAGCATATAGCCTGC
1 GGACTTTAAAC-CCGGATATAATTCCAGCATATAGCCTGC
* *
31955555 GGGTA-TTTAAACCCGGATATAATTCCAGGACATAGCCTGC
1 -GG-ACTTTAAACCCGGATATAATTCCAGCATATAGCCTGC
* * **
31955595 AGACCTTAAGTCCGGATATAATTCCAG-ATAT
1 GGACTTTAAACCCGGATATAATTCCAGCATAT
31955626 CATGCATATT
Statistics
Matches: 94, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
38 7 0.07
39 53 0.56
40 30 0.32
41 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (39 bp):
GGACTTTAAACCCGGATATAATTCCAGCATATAGCCTGC
Found at i:31955600 original size:79 final size:78
Alignment explanation
Indices: 31955481--31955625 Score: 227
Period size: 79 Copynumber: 1.8 Consensus size: 78
31955471 CCTTCGGGAC
* * *
31955481 TTTAAACCCGGATATATTTCCAGCATATAGCCTACGGACCTTAACTCCGGATATAATTCCAGCAT
1 TTTAAACCCGGATATAATTCCAGCACATAGCCTACAGACCTTAACTCCGGATATAATTCCAG-AT
31955546 ATAGCCTGCGGGTA
65 ATAGCCTGCGGGTA
* * *
31955560 TTTAAACCCGGATATAATTCCAGGACATAGCCTGCAGACCTTAAGTCCGGATATAATTCCAGATA
1 TTTAAACCCGGATATAATTCCAGCACATAGCCTACAGACCTTAACTCCGGATATAATTCCAGATA
31955625 T
66 T
31955626 CATGCATATT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 4 0.07
79 56 0.93
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (78 bp):
TTTAAACCCGGATATAATTCCAGCACATAGCCTACAGACCTTAACTCCGGATATAATTCCAGATA
TAGCCTGCGGGTA
Found at i:31959086 original size:27 final size:27
Alignment explanation
Indices: 31959032--31959145 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
31959022 AGGAACACCA
** * **
31959032 TTGTGGCATAATATAAAAAGAAAACCT
1 TTGTGGCGCAATATAAAAGGAATGCCT
**
31959059 TTGTGGCTTAATATAAAAGGAATGCCT
1 TTGTGGCGCAATATAAAAGGAATGCCT
** * *
31959086 TTGCAGCGCAATATGAAAGGAACGCCT
1 TTGTGGCGCAATATAAAAGGAATGCCT
* *
31959113 TTGTGACGCATTATAAAAGGAATGCCT
1 TTGTGGCGCAATATAAAAGGAATGCCT
31959140 TTGTGG
1 TTGTGG
31959146 TGAAATATGA
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (27 bp):
TTGTGGCGCAATATAAAAGGAATGCCT
Found at i:31959158 original size:27 final size:27
Alignment explanation
Indices: 31959068--31959184 Score: 85
Period size: 27 Copynumber: 4.3 Consensus size: 27
31959058 TTTGTGGCTT
* * *
31959068 AATATAAAAGGAATGCCTTTGCAGCGC
1 AATATGAAAGGAATGCCTTTGTAGCGA
* *
31959095 AATATGAAAGGAACGCCTTTGT-GACGC
1 AATATGAAAGGAATGCCTTTGTAG-CGA
* * * *
31959122 ATTATAAAAGGAATGCCTTTGTGGTGA
1 AATATGAAAGGAATGCCTTTGTAGCGA
* * *
31959149 AATATGAAA-GAGTAGCCTTTATAGTGA
1 AATATGAAAGGAAT-GCCTTTGTAGCGA
*
31959176 ATTATGAAA
1 AATATGAAA
31959185 TAGTAGTGTA
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
26 4 0.05
27 68 0.93
28 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (27 bp):
AATATGAAAGGAATGCCTTTGTAGCGA
Found at i:31959189 original size:27 final size:27
Alignment explanation
Indices: 31959136--31959190 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
31959126 TAAAAGGAAT
* *
31959136 GCCTTTGTGGTGAAATATGAAAGAGTA
1 GCCTTTATAGTGAAATATGAAAGAGTA
* *
31959163 GCCTTTATAGTGAATTATGAAATAGTA
1 GCCTTTATAGTGAAATATGAAAGAGTA
31959190 G
1 G
31959191 TGTAGCATCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.33
Consensus pattern (27 bp):
GCCTTTATAGTGAAATATGAAAGAGTA
Found at i:31961353 original size:27 final size:27
Alignment explanation
Indices: 31961323--31961504 Score: 242
Period size: 27 Copynumber: 6.8 Consensus size: 27
31961313 TAAATGATAG
* *
31961323 AATGACTTTTTTACCCTTATGTGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
31961350 AATGACTGTTTTGCCCTTATGTGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
*
31961377 AATGACTGTTTTG-CCTTATATGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
* *
31961403 AATGACTTTTTTGCCCTTATATGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
* * * *
31961430 AATGACTGTTTTACCTTTATGTTGCAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
*
31961457 AATGACTATTTTGCCCTTATGTGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
* *
31961484 GATGATTGTTTTGCCC-TATGT
1 AATGACTGTTTTGCCCTTATGT
31961505 ACAATATATA
Statistics
Matches: 136, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 29 0.21
27 107 0.79
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.43
Consensus pattern (27 bp):
AATGACTGTTTTGCCCTTATGTGGTAA
Found at i:31961412 original size:80 final size:81
Alignment explanation
Indices: 31961323--31961504 Score: 253
Period size: 80 Copynumber: 2.3 Consensus size: 81
31961313 TAAATGATAG
* * * *
31961323 AATGACTTTTTTACCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTGTTT
1 AATGACTTTTTTGCCCTTATGTGGTAAAATGACTGTTTTACCCTTATGTGGCAAAATGACTATTT
31961388 TG-CCTTATATGGTAA
66 TGCCCTTATATGGTAA
* * *
31961403 AATGACTTTTTTGCCCTTATATGGTAAAATGACTGTTTTACCTTTATGTTGCAAAATGACTATTT
1 AATGACTTTTTTGCCCTTATGTGGTAAAATGACTGTTTTACCCTTATGTGGCAAAATGACTATTT
*
31961468 TGCCCTTATGTGGTAA
66 TGCCCTTATATGGTAA
*
31961484 GATGA-TTGTTTTGCCC-TATGT
1 AATGACTT-TTTTGCCCTTATGT
31961505 ACAATATATA
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
80 66 0.73
81 24 0.27
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.43
Consensus pattern (81 bp):
AATGACTTTTTTGCCCTTATGTGGTAAAATGACTGTTTTACCCTTATGTGGCAAAATGACTATTT
TGCCCTTATATGGTAA
Found at i:31965967 original size:22 final size:22
Alignment explanation
Indices: 31965942--31966017 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
31965932 AAGTGTATAT
31965942 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
31965964 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
*
31965988 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
31966011 ATGTGAT
1 ATGTGAT
31966018 GGATGTGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 19 0.47
23 4 0.10
24 5 0.12
25 12 0.30
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:31965974 original size:47 final size:47
Alignment explanation
Indices: 31965920--31966092 Score: 283
Period size: 47 Copynumber: 3.7 Consensus size: 47
31965910 ATGATGAAAT
31965920 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
31965967 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* * *
31966014 TGATGGATGTGAAGGTGTATATATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
31966061 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
31966093 TCCCGAAGGG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:31966005 original size:25 final size:25
Alignment explanation
Indices: 31965934--31966006 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
31965924 GAATGTGAAA
31965934 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
31965959 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
31965981 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
31966006 G
1 G
31966007 GCCGATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 5 0.14
25 13 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:31968125 original size:43 final size:43
Alignment explanation
Indices: 31968073--31968372 Score: 519
Period size: 43 Copynumber: 7.0 Consensus size: 43
31968063 AAGAGCATTC
*
31968073 GTGCCGGTGATATGTATTCGGGCCTTCATGCCTAGCAGGCTTT
1 GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
*
31968116 GAGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
1 GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
31968159 GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
1 GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
31968202 GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
1 GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
*
31968245 GTGCCGATGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
1 GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
* *
31968288 GTGCCGATGATATGTATTCAGGCCTTCGTGCCTAGCAGGCTTT
1 GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
* * **
31968331 GTGCCGATAATATGTATTCGGGTTTTCGTGCCTAGCAGGCTT
1 GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTT
31968373 AATGCCGTGA
Statistics
Matches: 248, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 248 1.00
ACGTcount: A:0.14, C:0.23, G:0.31, T:0.33
Consensus pattern (43 bp):
GTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTT
Found at i:31972094 original size:22 final size:22
Alignment explanation
Indices: 31972069--31972144 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
31972059 AAGTGTATAT
31972069 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
31972091 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
*
31972115 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
31972138 ATGTGAT
1 ATGTGAT
31972145 GGATGTGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 19 0.47
23 4 0.10
24 5 0.12
25 12 0.30
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:31972101 original size:47 final size:47
Alignment explanation
Indices: 31972047--31972219 Score: 283
Period size: 47 Copynumber: 3.7 Consensus size: 47
31972037 ATGATGAAAT
31972047 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
31972094 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* * *
31972141 TGATGGATGTGAAGGTGTATATATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
31972188 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
31972220 TCCCGAAGGG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:31972132 original size:25 final size:25
Alignment explanation
Indices: 31972061--31972133 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
31972051 GAATGTGAAA
31972061 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
31972086 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
31972108 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
31972133 G
1 G
31972134 GCCGATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 5 0.14
25 13 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:31975247 original size:27 final size:26
Alignment explanation
Indices: 31975217--31975309 Score: 123
Period size: 27 Copynumber: 3.5 Consensus size: 26
31975207 TAAACAATAG
*
31975217 AATGACTGTTTTTCCCTTATGTGGTGA
1 AATGACTATTTTTCCCTTATGTGGT-A
* *
31975244 AATGACAATTTTGCCCTTATGTGGTAA
1 AATGACTATTTTTCCCTTATGTGGT-A
*
31975271 AATGACTATTTTTCCCATATGTGGTA
1 AATGACTATTTTTCCCTTATGTGGTA
31975297 AGATGACTATTTT
1 A-ATGACTATTTT
31975310 GCCCCTAAGT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.03
27 56 0.97
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (26 bp):
AATGACTATTTTTCCCTTATGTGGTA
Found at i:31979068 original size:26 final size:27
Alignment explanation
Indices: 31979005--31979134 Score: 154
Period size: 27 Copynumber: 4.9 Consensus size: 27
31978995 TAAACAATAG
* * *
31979005 AATGACTATTTTACCTTTATGTGGTGA
1 AATGACTATTTTGCCCTTATGTGGTAA
31979032 AATGACTATTTTGCCCTTATG-GGTAA
1 AATGACTATTTTGCCCTTATGTGGTAA
* *
31979058 AATGACAATTTTGCCCTTATGGGGTAA
1 AATGACTATTTTGCCCTTATGTGGTAA
* **
31979085 AATGATTATTTTGCCCACATGTGGTAA
1 AATGACTATTTTGCCCTTATGTGGTAA
* * *
31979112 GATGACTATTTTCCCCCTATGTG
1 AATGACTATTTTGCCCTTATGTG
31979135 CAGTATATAT
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 24 0.27
27 64 0.73
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (27 bp):
AATGACTATTTTGCCCTTATGTGGTAA
Found at i:31979088 original size:53 final size:54
Alignment explanation
Indices: 31979005--31979132 Score: 150
Period size: 53 Copynumber: 2.4 Consensus size: 54
31978995 TAAACAATAG
* * * **
31979005 AATGACTATTTTACCTTTATGTGGTGAAATGACTATTTTGCCCTTATG-GGTAA
1 AATGACTATTTTACCCTTATGGGGTAAAATGACTATTTTGCCCACATGTGGTAA
* * *
31979058 AATGACAATTTTGCCCTTATGGGGTAAAATGATTATTTTGCCCACATGTGGTAA
1 AATGACTATTTTACCCTTATGGGGTAAAATGACTATTTTGCCCACATGTGGTAA
* * *
31979112 GATGACTATTTTCCCCCTATG
1 AATGACTATTTTACCCTTATG
31979133 TGCAGTATAT
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
53 40 0.65
54 22 0.35
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (54 bp):
AATGACTATTTTACCCTTATGGGGTAAAATGACTATTTTGCCCACATGTGGTAA
Found at i:31980968 original size:20 final size:22
Alignment explanation
Indices: 31980926--31980972 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
31980916 TGTAAAAGGA
31980926 ATGTTTGATAGACCTTGTATAT
1 ATGTTTGATAGACCTTGTATAT
*
31980948 ATGTTTGATAGACCTTATATAT
1 ATGTTTGATAGACCTTGTATAT
31980970 ATG
1 ATG
31980973 GATAGTATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.45
Consensus pattern (22 bp):
ATGTTTGATAGACCTTGTATAT
Found at i:31981461 original size:30 final size:30
Alignment explanation
Indices: 31981425--31981523 Score: 112
Period size: 30 Copynumber: 3.4 Consensus size: 30
31981415 TTTGTAAAGC
** *
31981425 AAAGCCTTTGTGGCAAATCTTTGCAAAGGA
1 AAAGCCTTTGTGGCAAGCCTATGCAAAGGA
* *
31981455 AAAGCCTTTGTGGCAAGCCTATGCAACGAA
1 AAAGCCTTTGTGGCAAGCCTATGCAAAGGA
* * *
31981485 AAAGCCTTGGTGGCGAGCCTCTG-AAAGG-
1 AAAGCCTTTGTGGCAAGCCTATGCAAAGGA
31981513 AAAGCCTTTGT
1 AAAGCCTTTGT
31981524 AGAGAACCTT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 10 0.17
29 3 0.05
30 45 0.78
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (30 bp):
AAAGCCTTTGTGGCAAGCCTATGCAAAGGA
Found at i:31983071 original size:26 final size:27
Alignment explanation
Indices: 31983042--31983259 Score: 164
Period size: 26 Copynumber: 8.2 Consensus size: 27
31983032 AATTAGCTTC
*
31983042 TGTGGAGAAATATGAAA-AGTAGCCTT
1 TGTGGCGAAATATGAAAGAGTAGCCTT
* *
31983068 TGTGGCGAAAAATGAAA-AGTAGCCAT
1 TGTGGCGAAATATGAAAGAGTAGCCTT
* * *
31983094 TGTTGTGAAATATGAAAGCA-TAACCTT
1 TGTGGCGAAATATGAAAG-AGTAGCCTT
* **
31983121 TATGGAAAAATATGAAAGAGTAGCCTTT
1 TGTGGCGAAATATGAAAGAGTAGCC-TT
31983149 TGTGGCG-AATATGAAAGAGTA-CACTT
1 TGTGGCGAAATATGAAAGAGTAGC-CTT
*
31983175 TTTGGCG-AATATGAAAGAGTAGCCTT
1 TGTGGCGAAATATGAAAGAGTAGCCTT
** * * *
31983201 TAAGGCTAAACATGAAACA-TAAGCCTT
1 TGTGGCGAAATATGAAAGAGT-AGCCTT
* * * * *
31983228 TGTGGC-AACTTTGAAGGAATAGCTTT
1 TGTGGCGAAATATGAAAGAGTAGCCTT
31983254 TGTGGC
1 TGTGGC
31983260 CCATTTTGAA
Statistics
Matches: 153, Mismatches: 30, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
26 87 0.57
27 59 0.39
28 7 0.05
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.28
Consensus pattern (27 bp):
TGTGGCGAAATATGAAAGAGTAGCCTT
Found at i:31996681 original size:46 final size:45
Alignment explanation
Indices: 31996629--31996803 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
31996619 TGGTTGAGCA
31996629 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * *
31996675 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
* *
31996720 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
*
31996768 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
31996804 GGCGGGTTAC
Statistics
Matches: 108, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.56
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:31996785 original size:93 final size:93
Alignment explanation
Indices: 31996626--31996796 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
31996616 GGATGGTTGA
* *
31996626 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCGTTGAGT
31996691 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
31996719 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCGTTGAGT
31996784 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
31996797 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:31998885 original size:28 final size:27
Alignment explanation
Indices: 31998822--31998891 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
31998812 ATAGTGAGTC
31998822 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
31998849 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
31998877 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
31998892 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32006675 original size:28 final size:27
Alignment explanation
Indices: 32006612--32006681 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
32006602 ATAGTGAGTC
32006612 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
32006639 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32006667 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32006682 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32019106 original size:49 final size:49
Alignment explanation
Indices: 32019038--32019136 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
32019028 ATAGGTGCTT
* *
32019038 AGTTTTGCTATCCATGATTTTGGCTTGATATATG-ATATGATGCTTGGTC
1 AGTTTTGCTATCCAAGATTTTGGCTTGAAATATGCA-ATGATGCTTGGTC
*
32019087 AGTTTTGCTATCCAAGATTTTGGCTTGAAATATGCAGTGATGCTTGGTC
1 AGTTTTGCTATCCAAGATTTTGGCTTGAAATATGCAATGATGCTTGGTC
32019136 A
1 A
32019137 TGGTTTGGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 45 0.98
50 1 0.02
ACGTcount: A:0.22, C:0.13, G:0.23, T:0.41
Consensus pattern (49 bp):
AGTTTTGCTATCCAAGATTTTGGCTTGAAATATGCAATGATGCTTGGTC
Found at i:32023250 original size:28 final size:28
Alignment explanation
Indices: 32023185--32023285 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
32023175 ATAGTGAATC
*
32023185 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
32023214 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32023242 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
32023272 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32023286 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32029439 original size:89 final size:93
Alignment explanation
Indices: 32029334--32029518 Score: 324
Period size: 93 Copynumber: 2.0 Consensus size: 93
32029324 TTGCGCGACC
32029334 CTCATTCATCATGGTG-AGAAGG-TTGTTTCG-CCTTCATTTTGATTATTCGCGGATGACTGAGG
1 CTCATTCATCATGGTGAAGAAGGCTTGTTTCGCCCTTCATTTTGATTATTCGCGGATGACTGAGG
32029396 CTCAACGGGCGGTG-CCTTGCGCAGGAG
66 CTCAACGGGCGGTGCCCTTGCGCAGGAG
32029423 CTCATTCATCATGGTGAAGAAGGCTTGTTTCGCCCCTTCATTTTGATTATTCGCGGATGACTGAG
1 CTCATTCATCATGGTGAAGAAGGCTTGTTTCG-CCCTTCATTTTGATTATTCGCGGATGACTGAG
32029488 GCTCAACGGGCGGTGTCCCTTGCGCAGGAG
65 GCTCAACGGGCGGTG-CCCTTGCGCAGGAG
32029518 C
1 C
32029519 AGCCGCTACA
Statistics
Matches: 90, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
89 16 0.18
90 6 0.07
91 8 0.09
93 46 0.51
95 14 0.16
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.30
Consensus pattern (93 bp):
CTCATTCATCATGGTGAAGAAGGCTTGTTTCGCCCTTCATTTTGATTATTCGCGGATGACTGAGG
CTCAACGGGCGGTGCCCTTGCGCAGGAG
Found at i:32031161 original size:28 final size:28
Alignment explanation
Indices: 32031096--32031196 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
32031086 ATAGTGAATC
*
32031096 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
32031125 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32031153 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
32031183 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32031197 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32039119 original size:28 final size:28
Alignment explanation
Indices: 32039054--32039154 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
32039044 ATAGTGAATC
*
32039054 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
32039083 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32039111 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
32039141 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32039155 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32046013 original size:21 final size:20
Alignment explanation
Indices: 32045985--32046023 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
32045975 GCATGTGTTT
*
32045985 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTAATAGATTA
*
32046005 TGAATGTTTGTTAATAGAT
1 TGAA-GTTTCTTAATAGAT
32046024 ATACAAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTAATAGATTA
Found at i:32046564 original size:40 final size:40
Alignment explanation
Indices: 32046520--32046655 Score: 145
Period size: 40 Copynumber: 3.4 Consensus size: 40
32046510 CTATTTCTGG
*
32046520 CACTTAGTGTGAT-ATTCAACATAGTTTTGGCTATATATGA
1 CACTTAGTGTG-TGATTCAACATAGTTTAGGCTATATATGA
** * *
32046560 CACTTAGTGTGTGATTTGACATAGCTTCAGG-TATATATGG
1 CACTTAGTGTGTGATTCAACATAG-TTTAGGCTATATATGA
* *
32046600 CACTTTGTGTGTGATTCAACATAGCTTCA-GCTATATATGGA
1 CACTTAGTGTGTGATTCAACATAG-TTTAGGCTATATAT-GA
32046641 -ACTTAGTGTGTGATT
1 CACTTAGTGTGTGATT
32046656 TGACATAGCT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.02
40 75 0.91
41 5 0.06
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.39
Consensus pattern (40 bp):
CACTTAGTGTGTGATTCAACATAGTTTAGGCTATATATGA
Found at i:32046602 original size:80 final size:80
Alignment explanation
Indices: 32046506--32046693 Score: 254
Period size: 80 Copynumber: 2.4 Consensus size: 80
32046496 TGATGACAAA
* * * **
32046506 TCAGCTATTTCTGGCACTTAGTGTGAT-ATTCAACATAGTTTTGGCTATATAT-GACACTTAGTG
1 TCAGCTATATATGGCACTTAGTGTG-TGATTCAACATAGCTTCAGCTATATATGGA-ACTTAGTG
32046569 TGTGATTTGACATAGCT
64 TGTGATTTGACATAGCT
* *
32046586 TCAGGTATATATGGCACTTTGTGTGTGATTCAACATAGCTTCAGCTATATATGGAACTTAGTGTG
1 TCAGCTATATATGGCACTTAGTGTGTGATTCAACATAGCTTCAGCTATATATGGAACTTAGTGTG
32046651 TGATTTGACATAGCT
66 TGATTTGACATAGCT
* * *
32046666 TCAGCTATGTACGGTACTTAGTGTGTGA
1 TCAGCTATATATGGCACTTAGTGTGTGA
32046694 GACATTGAGT
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 91 0.97
81 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.38
Consensus pattern (80 bp):
TCAGCTATATATGGCACTTAGTGTGTGATTCAACATAGCTTCAGCTATATATGGAACTTAGTGTG
TGATTTGACATAGCT
Found at i:32046662 original size:40 final size:40
Alignment explanation
Indices: 32046549--32046693 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
32046539 CATAGTTTTG
32046549 GCTATATAT-GACACTTAGTGTGTGATTTGACATAGCTTCA
1 GCTATATATGGA-ACTTAGTGTGTGATTTGACATAGCTTCA
* * * **
32046589 GGTATATATGGCACTTTGTGTGTGATTCAACATAGCTTCA
1 GCTATATATGGAACTTAGTGTGTGATTTGACATAGCTTCA
32046629 GCTATATATGGAACTTAGTGTGTGATTTGACATAGCTTCA
1 GCTATATATGGAACTTAGTGTGTGATTTGACATAGCTTCA
* * *
32046669 GCTATGTACGGTACTTAGTGTGTGA
1 GCTATATATGGAACTTAGTGTGTGA
32046694 GACATTGAGT
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 90 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (40 bp):
GCTATATATGGAACTTAGTGTGTGATTTGACATAGCTTCA
Found at i:32050149 original size:16 final size:16
Alignment explanation
Indices: 32050124--32050160 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
32050114 GAAAGGAGAG
32050124 AGTAAGCTTTATGCTT
1 AGTAAGCTTTATGCTT
*
32050140 AGTAATCTTTATGCTT
1 AGTAAGCTTTATGCTT
32050156 AGTAA
1 AGTAA
32050161 CCTCGCATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (16 bp):
AGTAAGCTTTATGCTT
Found at i:32053648 original size:28 final size:27
Alignment explanation
Indices: 32053585--32053654 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
32053575 ATAGTGAGTC
32053585 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
32053612 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32053640 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32053655 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32056950 original size:26 final size:26
Alignment explanation
Indices: 32056921--32056975 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
32056911 TCGCCATATT
32056921 TTCAAAGCGAATACGATAGCAGCTAG
1 TTCAAAGCGAATACGATAGCAGCTAG
32056947 TTCAAAGCGAATACGATAGCAGCTAG
1 TTCAAAGCGAATACGATAGCAGCTAG
32056973 TTC
1 TTC
32056976 GAGATCATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
TTCAAAGCGAATACGATAGCAGCTAG
Found at i:32061490 original size:28 final size:27
Alignment explanation
Indices: 32061427--32061496 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
32061417 ATAGTGAGTC
32061427 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
32061454 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32061482 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32061497 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32074297 original size:9 final size:9
Alignment explanation
Indices: 32074283--32074318 Score: 63
Period size: 9 Copynumber: 3.9 Consensus size: 9
32074273 AAGTAAAATT
32074283 AAATTAATC
1 AAATTAATC
32074292 AAATTAATC
1 AAATTAATC
32074301 AAATTAATTC
1 AAATTAA-TC
32074311 AAATTAAT
1 AAATTAAT
32074319 ATGATATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 17 0.65
10 9 0.35
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (9 bp):
AAATTAATC
Found at i:32074312 original size:19 final size:18
Alignment explanation
Indices: 32074283--32074318 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
32074273 AAGTAAAATT
32074283 AAATTAATCAAATTAATC
1 AAATTAATCAAATTAATC
32074301 AAATTAATTCAAATTAAT
1 AAATTAA-TCAAATTAAT
32074319 ATGATATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATTAATCAAATTAATC
Found at i:32074890 original size:19 final size:20
Alignment explanation
Indices: 32074851--32074897 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
32074841 CTAAACCGAT
32074851 AACTTAAGAAATTTTTACAA
1 AACTTAAGAAATTTTTACAA
*
32074871 AACTT-AGAAA-TTTTACCA
1 AACTTAAGAAATTTTTACAA
32074889 AACTGTAAG
1 AACT-TAAG
32074898 GGTCACATGC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 11 0.46
19 6 0.25
20 7 0.29
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.32
Consensus pattern (20 bp):
AACTTAAGAAATTTTTACAA
Found at i:32083642 original size:43 final size:42
Alignment explanation
Indices: 32083587--32083758 Score: 147
Period size: 43 Copynumber: 4.0 Consensus size: 42
32083577 TAAGGATACA
32083587 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
*
32083630 ATGCCACTGTCCCAGACAG-GGTCTTACACT-AAATCAAATAT-G
1 ATGCCAC-GTCCCAGAC-GTGGTCTTACA-TGTAATCAAATATCG
* * ** * *
32083672 ATGACAATGTCCCAGATATGGTCTTACACGTAAATCATAA-GTCG
1 ATG-CCACGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
* *
32083716 ATGCTAACGTCCCAGACGTGGTCTTACATGATAA-CACATATCG
1 ATGC-CACGTCCCAGACGTGGTCTTACATG-TAATCAAATATCG
32083759 GATTCTATGT
Statistics
Matches: 103, Mismatches: 14, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
42 24 0.23
43 47 0.46
44 31 0.30
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:32083696 original size:42 final size:43
Alignment explanation
Indices: 32083595--32083743 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
32083585 CAATGCCAAC
* * * *
32083595 GTCCCAGACGTGGTCTTACA-TGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACT-AAATCAAATATCGATGACAAT
*
32083638 GTCCCAGACAGGGTCTTACACTAAATCAAATAT-GATGACAAT
1 GTCCCAGACATGGTCTTACACTAAATCAAATATCGATGACAAT
* * *
32083680 GTCCCAGATATGGTCTTACACGTAAATCATAA-GTCGATG-CTAAC
1 GTCCCAGACATGGTCTTACAC-TAAATCA-AATATCGATGAC-AAT
*
32083724 GTCCCAGACGTGGTCTTACA
1 GTCCCAGACATGGTCTTACA
32083744 TGATAACACA
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
42 26 0.29
43 37 0.41
44 27 0.30
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACTAAATCAAATATCGATGACAAT
Found at i:32090876 original size:93 final size:93
Alignment explanation
Indices: 32090764--32090935 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32090754 GCCCATAAGT
* *
32090764 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32090829 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32090857 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32090922 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32090936 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32090931 original size:46 final size:46
Alignment explanation
Indices: 32090756--32090931 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
32090746 TGTAACCCGC
* * *
32090756 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
32090802 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
32090852 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
32090895 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32090932 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:32093354 original size:29 final size:29
Alignment explanation
Indices: 32093315--32093402 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
32093305 CAAAGATAAC
*
32093315 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
32093344 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
32093373 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
32093403 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:32093373 original size:15 final size:15
Alignment explanation
Indices: 32093315--32093393 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
32093305 CAAAGATAAC
*
32093315 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
32093329 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
32093344 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
32093358 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
32093373 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
32093388 AAGAAA
1 AAGAAA
32093394 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32093402 original size:15 final size:15
Alignment explanation
Indices: 32093326--32093402 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
32093316 AGAAAACCGA
32093326 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
32093341 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
32093355 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
32093369 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
32093385 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
32093400 ATA
1 ATA
32093403 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32096461 original size:93 final size:93
Alignment explanation
Indices: 32096349--32096520 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32096339 GCCCATAAGT
* *
32096349 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32096414 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32096442 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32096507 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32096521 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32096516 original size:46 final size:46
Alignment explanation
Indices: 32096341--32096516 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
32096331 TGTAACCCGC
* * *
32096341 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
32096387 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
32096437 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
32096480 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32096517 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:32098943 original size:30 final size:30
Alignment explanation
Indices: 32098899--32098987 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
32098889 CAAAGATAAC
32098899 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
32098928 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
32098958 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
32098988 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:32098947 original size:15 final size:15
Alignment explanation
Indices: 32098899--32098978 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
32098889 CAAAGATAAC
*
32098899 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
32098913 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
32098928 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
32098943 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
32098958 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
32098973 AAGAAA
1 AAGAAA
32098979 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32098987 original size:15 final size:15
Alignment explanation
Indices: 32098910--32098987 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
32098900 AGAAAACCGA
32098910 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
32098925 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
32098939 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
32098954 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
32098970 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
32098985 ATA
1 ATA
32098988 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32102039 original size:93 final size:93
Alignment explanation
Indices: 32101927--32102098 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32101917 GCCCATAAGT
* *
32101927 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32101992 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32102020 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32102085 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32102099 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32102094 original size:46 final size:46
Alignment explanation
Indices: 32101919--32102094 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
32101909 TGTAACCCGC
* * *
32101919 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
32101965 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
32102015 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
32102058 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32102095 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:32104318 original size:30 final size:30
Alignment explanation
Indices: 32104274--32104362 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
32104264 CAAAGATAAC
32104274 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
32104303 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
32104333 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
32104363 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:32104322 original size:15 final size:15
Alignment explanation
Indices: 32104274--32104353 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
32104264 CAAAGATAAC
*
32104274 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
32104288 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
32104303 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
32104318 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
32104333 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
32104348 AAGAAA
1 AAGAAA
32104354 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32104362 original size:15 final size:15
Alignment explanation
Indices: 32104285--32104362 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
32104275 AGAAAACCGA
32104285 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
32104300 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
32104314 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
32104329 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
32104345 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
32104360 ATA
1 ATA
32104363 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32107215 original size:93 final size:93
Alignment explanation
Indices: 32107103--32107274 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32107093 GCCCATAAGT
* *
32107103 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32107168 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32107196 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32107261 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32107275 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32107270 original size:46 final size:46
Alignment explanation
Indices: 32107095--32107270 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
32107085 TGTAACCCGC
* * *
32107095 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
32107141 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
32107191 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
32107234 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32107271 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:32109694 original size:30 final size:30
Alignment explanation
Indices: 32109650--32109738 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
32109640 CAAAGATAAC
32109650 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
32109679 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
32109709 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
32109739 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:32109698 original size:15 final size:15
Alignment explanation
Indices: 32109650--32109729 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
32109640 CAAAGATAAC
*
32109650 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
32109664 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
32109679 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
32109694 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
32109709 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
32109724 AAGAAA
1 AAGAAA
32109730 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32109738 original size:15 final size:15
Alignment explanation
Indices: 32109661--32109738 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
32109651 AGAAAACCGA
32109661 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
32109676 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
32109690 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
32109705 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
32109721 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
32109736 ATA
1 ATA
32109739 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32112797 original size:93 final size:93
Alignment explanation
Indices: 32112685--32112856 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32112675 GCCCATAAGT
* *
32112685 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32112750 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32112778 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32112843 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32112857 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32112852 original size:46 final size:46
Alignment explanation
Indices: 32112677--32112852 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
32112667 TGTAACCCGC
* * *
32112677 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
32112723 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
32112773 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
32112816 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32112853 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:32115290 original size:29 final size:29
Alignment explanation
Indices: 32115245--32115319 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
32115235 AATATGACTA
** *
32115245 GGCCTAACAGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAAGGTGATTTG
* *
32115274 GGTCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAAGGTGATTTG
32115303 GGCCTAATGGGCCATAT
1 GGCCTAATGGGCCATAT
32115320 GTATATGATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAAGGTGATTTG
Found at i:32115316 original size:58 final size:57
Alignment explanation
Indices: 32115245--32115353 Score: 130
Period size: 57 Copynumber: 1.9 Consensus size: 57
32115235 AATATGACTA
* *
32115245 GGCCTAACAGGCCATATAAATGTGATTTGGG-TCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACAGGCCATATAAATATGA-TTGGGCT-TAATGGGCCAGATACAGGTGATTTG
** ** *
32115303 GGCCTAATGGGCCATATGTATATGATTGGGCTTAATGGGCTAGATACAGGT
1 GGCCTAACAGGCCATATAAATATGATTGGGCTTAATGGGCCAGATACAGGT
32115354 ATGTGAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
57 22 0.51
58 21 0.49
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (57 bp):
GGCCTAACAGGCCATATAAATATGATTGGGCTTAATGGGCCAGATACAGGTGATTTG
Found at i:32115328 original size:29 final size:29
Alignment explanation
Indices: 32115245--32115351 Score: 92
Period size: 29 Copynumber: 3.7 Consensus size: 29
32115235 AATATGACTA
** *
32115245 GGCCTAACAGGCCATATAAATG-TGATTTG
1 GGCCTAATGGGCCATATACA-GATGATTTG
* *
32115274 GGTCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATACAGATGATTTG
** *
32115303 GGCCTAATGGGCCATATGTATATGA-TTG
1 GGCCTAATGGGCCATATACAGATGATTTG
* * *
32115331 GGCTTAATGGGCTAGATACAG
1 GGCCTAATGGGCCATATACAG
32115352 GTATGTGAAA
Statistics
Matches: 62, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 19 0.31
29 43 0.69
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
GGCCTAATGGGCCATATACAGATGATTTG
Found at i:32117555 original size:43 final size:43
Alignment explanation
Indices: 32117494--32117652 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 43
32117484 CAATGCCATA
* * * *
32117494 TCCCAGATATGGTCTTACATGTTATCACATATCGATTCCATTG
1 TCCCAGACATGGTCTTACATGTAATCACATATCAATTCCAATG
* * *
32117537 TCCCAGACAGGGTCTTACATGAAATCGA-ATAACAATTCCAATG
1 TCCCAGACATGGTCTTACATGTAATC-ACATATCAATTCCAATG
** *
32117580 TCCCAGACATGGTCTTACACATAATCACA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATAT-CAATTCCAATG
*
32117623 TCCCAGACATGGTCTTACATGTAGTCACAT
1 TCCCAGACATGGTCTTACATGTAATCACAT
32117653 CTAGATAACC
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 2 0.02
43 93 0.97
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCAATTCCAATG
Found at i:32121020 original size:46 final size:46
Alignment explanation
Indices: 32120877--32121020 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 46
32120867 CCCGCCCATA
* * * *
32120877 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTATATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AACATC-CT
* *** * *
32120926 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAACCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAACATCCT
32120970 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
32121016 AGTGA
1 AGTGA
32121021 CATGTCACTT
Statistics
Matches: 73, Mismatches: 16, Indels: 15
0.70 0.15 0.14
Matches are distributed among these distances:
44 8 0.11
46 33 0.45
47 29 0.40
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
Found at i:32128838 original size:49 final size:48
Alignment explanation
Indices: 32128766--32128895 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 48
32128756 GGATAAGTTA
32128766 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCAT-TGAGG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-ATAT-AGG
* * * *
32128815 TCGATGCCATGTCCCAGACATGGTCTAACACTAGCTCTCGTATATATG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATATAGG
32128863 TGCTGATG-CATGTCCCAGACAT-GTCTTACACTA
1 T-C-GATGCCATGTCCCAGACATGGTCTTACACTA
32128896 ACACAACTCT
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
48 15 0.21
49 54 0.74
50 4 0.05
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATATAGG
Found at i:32129803 original size:12 final size:12
Alignment explanation
Indices: 32129786--32129810 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32129776 CAAAAATGTA
32129786 AAAATCATCAAG
1 AAAATCATCAAG
32129798 AAAATCATCAAG
1 AAAATCATCAAG
32129810 A
1 A
32129811 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:32135446 original size:13 final size:13
Alignment explanation
Indices: 32135430--32135454 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32135420 TGGACACACA
32135430 CCTGTGTCCTTTG
1 CCTGTGTCCTTTG
32135443 CCTGTGTCCTTT
1 CCTGTGTCCTTT
32135455 CACATGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.32, G:0.20, T:0.48
Consensus pattern (13 bp):
CCTGTGTCCTTTG
Found at i:32136461 original size:49 final size:47
Alignment explanation
Indices: 32136403--32136745 Score: 251
Period size: 49 Copynumber: 7.3 Consensus size: 47
32136393 TCATGTCATG
32136403 GTCTTACACTGGCACTCATCATCGAGGCCGATGCCATGTCCAAGACAT
1 GTCTTACACTGGCACTCATCATCGAGGCCGATG-CATGTCCAAGACAT
* * ** * * *
32136451 GGTTTTACACTAGTTCTCGTAT-ATACG-TGCTGATGCATGTCCCAGACAT
1 -GTCTTACACTGGCACTC--ATCAT-CGAGGCCGATGCATGTCCAAGACAT
* * * * *
32136500 GTCTTACACTAGCAC-AACTC-TC-A-GTCGATGCATGTCCCAGACAC
1 GTCTTACACTGGCACTCA-TCATCGAGGCCGATGCATGTCCAAGACAT
* * * *
32136544 GTCTTACACTGGCTA-TCATCGTCGAGGCCGATCCAAGTCCCAGACAT
1 GTCTTACACTGGC-ACTCATCATCGAGGCCGATGCATGTCCAAGACAT
* * *
32136591 GTCTTACACTGGCACTCATC-TCTACGCCGATGCCATGTCCCAATACAT
1 GTCTTACACTGGCACTCATCATCGAGGCCGATG-CATGT-CCAAGACAT
* * *
32136639 GGTCTTACACTGGCACTCATAAT-GTGGTCGATGCATGTCCCAA-ACAT
1 -GTCTTACACTGGCACTCATCATCGAGGCCGATGCATGT-CCAAGACAT
* * * ** *
32136686 GTCTTACACTGCCACTCATAAT-GTGTTCGATGCA-GTCCTAGACAT
1 GTCTTACACTGGCACTCATCATCGAGGCCGATGCATGTCCAAGACAT
32136731 GTCTTACACTGGCAC
1 GTCTTACACTGGCAC
32136746 ACAAGAAATT
Statistics
Matches: 242, Mismatches: 35, Indels: 38
0.77 0.11 0.12
Matches are distributed among these distances:
44 35 0.14
45 26 0.11
46 45 0.19
47 43 0.18
48 29 0.12
49 51 0.21
50 9 0.04
51 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GTCTTACACTGGCACTCATCATCGAGGCCGATGCATGTCCAAGACAT
Found at i:32137477 original size:12 final size:12
Alignment explanation
Indices: 32137460--32137484 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32137450 CAAAAATGTA
32137460 AAAATCATCAAG
1 AAAATCATCAAG
32137472 AAAATCATCAAG
1 AAAATCATCAAG
32137484 A
1 A
32137485 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:32139598 original size:43 final size:43
Alignment explanation
Indices: 32139510--32139616 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
32139500 TGTGATTGCA
* * * *
32139510 TGTAAGACCATGCCTAGGACATTGGCGTTGTATTTTGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTTCGATTACG
*
32139553 TGTAAGACCATGTCTGGGACATTGGCATCAT-TA-TTCGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCAT--TGTATTTCGATTACG
* *
32139596 TGTAAGACCCTGTTTGGGACA
1 TGTAAGACCATGTCTGGGACA
32139617 GTAGTATCGA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 52 0.95
44 2 0.04
45 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTTCGATTACG
Found at i:32142991 original size:37 final size:36
Alignment explanation
Indices: 32142938--32143013 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
32142928 ATTCTAAAAA
*
32142938 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATGT
*
32142974 TAATACTTATCTTAATAGTATTTTATTAATTTAATGT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATGT
32143011 TAA
1 TAA
32143014 AATGATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATGT
Found at i:32143279 original size:26 final size:25
Alignment explanation
Indices: 32143250--32143299 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
32143240 AGTTATTGAG
32143250 AGAAAATTATCT-GAAGAGATTTTTTC
1 AGAAAATT-TCTAG-AGAGATTTTTTC
*
32143276 AGAAAATTTCTAGAGATATTTTTT
1 AGAAAATTTCTAGAGAGATTTTTT
32143300 TGATTTACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42
Consensus pattern (25 bp):
AGAAAATTTCTAGAGAGATTTTTTC
Found at i:32143297 original size:23 final size:25
Alignment explanation
Indices: 32143250--32143297 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
32143240 AGTTATTGAG
*
32143250 AGAAAATTATCTGAAGAGATTTTTTC
1 AGAAAATTATCT-AAGAGATATTTTC
32143276 AGAAAATT-TCT-AGAGATATTTT
1 AGAAAATTATCTAAGAGATATTTT
32143298 TTTGATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 10 0.48
25 3 0.14
26 8 0.38
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (25 bp):
AGAAAATTATCTAAGAGATATTTTC
Found at i:32146882 original size:3 final size:3
Alignment explanation
Indices: 32146874--32146909 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
32146864 ATAAGTTAAT
32146874 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32146910 AACAACATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:32147967 original size:20 final size:20
Alignment explanation
Indices: 32147913--32148000 Score: 59
Period size: 20 Copynumber: 4.4 Consensus size: 20
32147903 CTTGTACGGG
* *
32147913 TTTGCAATTTGGTGCCTCTA
1 TTTGCACTTCGGTGCCTCTA
* * * *
32147933 TGTGCACATCAGTGCCTCTT
1 TTTGCACTTCGGTGCCTCTA
* *
32147953 TTTGCACTTCGGTGCTTCTG
1 TTTGCACTTCGGTGCCTCTA
* * **
32147973 TGTACACTTCGGTATCTCTA
1 TTTGCACTTCGGTGCCTCTA
*
32147993 ATTGCACT
1 TTTGCACT
32148001 ACAGTGTCTC
Statistics
Matches: 48, Mismatches: 20, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.15, C:0.25, G:0.19, T:0.41
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTA
Found at i:32151101 original size:39 final size:40
Alignment explanation
Indices: 32150988--32151172 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
32150978 TCGAATGATG
* *
32150988 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAT
*
32151027 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAT
* * * *
32151068 TCCGGGCTAAG-CCCGAAGGCGTTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
32151107 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* * *
32151146 AACCAGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32151173 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
Found at i:32151124 original size:79 final size:80
Alignment explanation
Indices: 32150988--32151167 Score: 206
Period size: 79 Copynumber: 2.3 Consensus size: 80
32150978 TCGAATGATG
* *
32150988 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
32151053 GTGCAAGTTACTAAT
66 GTGCAAGTTACTAAT
* * * **
32151068 TCCGGGCTAAG-CCCGAAGGCGTTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
32151130 TTGTGCGAGTTACT-AT
64 TTGTGCAAGTTACTAAT
* * *
32151146 AACCAGGCTATGTCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGC
32151168 ATTTGAACGA
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 56 0.66
80 26 0.31
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCAAGTTACTAAT
Found at i:32151194 original size:79 final size:79
Alignment explanation
Indices: 32151041--32151205 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
32151031 GGACTAAGAT
* * * **
32151041 CCGAAGGCATTTGTGCAAGTTACTAATTCCGGGCTAAGCCCGAAGGCGTTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
32151106 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
32151120 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
32151183 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32151199 CCGAAGG
1 CCGAAGG
32151206 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32159168 original size:79 final size:81
Alignment explanation
Indices: 32159032--32159214 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
32159022 TCGAATGATG
* *
32159032 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32159096 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
32159111 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
32159173 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
32159191 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32159215 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:32159230 original size:40 final size:40
Alignment explanation
Indices: 32159033--32159216 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
32159023 CGAATGATGT
* * * *
32159033 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
32159073 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
32159113 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32159151 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32159192 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32159217 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32159238 original size:79 final size:79
Alignment explanation
Indices: 32159085--32159249 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
32159075 GGACTAAGAT
* **
32159085 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
32159150 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32159164 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
32159227 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32159243 CCGAAGG
1 CCGAAGG
32159250 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32162736 original size:374 final size:379
Alignment explanation
Indices: 32162026--32162779 Score: 1382
Period size: 374 Copynumber: 2.0 Consensus size: 379
32162016 TAATAAAATA
*
32162026 AAGAGCATGGGCAATAAAATATTAGTGTTAGTAGGATGAGAAACAAAAAAAAAAAAGAAAGGATG
1 AAGAGCATGGGCAATAAAATATTAGTGTTAGTAGGATGAGAAAAAAAAAAAAAAAAGAAAGGATG
*
32162091 TGTGTGATTGTCCCCCCATTGCCGTGAGTTGAAGGAAAGAAAAACAAAAAAAAAGTGTTCATCCT
66 TGTGTGATTGTCCCCCCATTGCCGTGAGTTGAAGGAAAGAAAAAAAAAAAAAAAGTGTTCATCCT
32162156 TTGGTTCATCCTTGGCCGAAAATTTTAAGGAGGAAGGAAGAAGAAAGGTTGAAGAGGTTCGGCCA
131 TTGGTTCATCCTTGGCCGAAAATTTTAA-GAGGAAGGAAGAAGAAAGGTTGAAGAGGTTCGGCCA
32162221 TGCATGTAACTAGGCTAAGGTATGTTTGATGATGTTCCATGAGATGCATGCATGTTTTAGTTTTA
195 TGCATGTAACTAGGCTAAGGTATGTTTGATGATGTTCCATGAGATGCATGCATGTTTTAGTTTTA
32162286 GCTTGAGTTCTACCTAGCCCATGGTCTAAATCTTGCTATGTGATGGAAATGACACTCGGCCATGG
260 GCTTGAGTTCTACCTAGCCCATGGTCTAAATCTTGCTATGTGATGGAAATGACACTCGGCCATGG
32162351 ATGCATCATTCTTGCTTGGTGTTGATGTTGTGTTGGTGAGATATCAAGTTATTTT
325 ATGCATCATTCTTGCTTGGTGTTGATGTTGTGTTGGTGAGATATCAAGTTATTTT
32162406 AAGAGCATGGGCAAT-AAATATTAGTGTTAGTAGGATGA-AAAAAAAAAAAAAAAAGAAAGGATG
1 AAGAGCATGGGCAATAAAATATTAGTGTTAGTAGGATGAGAAAAAAAAAAAAAAAAGAAAGGATG
32162469 TGTGTGATTGTCCCCCCATTGCCGTGAGTTGAA-GAAAGAAAACAAAAAAAAAAAAGTGTTCATC
66 TGTGTGATTGTCCCCCCATTGCCGTGAGTTGAAGGAAAG-AAA-AAAAAAAAAAAAGTGTTCATC
32162533 CTTTGGTTCAT-CTTGGCCGAAAATTTT-A-AGG-AGGAAGAAGAAAGG-TGAAGAGGTTCCGGC
129 CTTTGGTTCATCCTTGGCCGAAAATTTTAAGAGGAAGGAAGAAGAAAGGTTGAAGAGGTT-CGGC
32162593 CATGCATGTAACTAGGCTAAGGTATGTTTGATGATGTTCCATGAGATGCATGCATGTTTTAGTTG
193 CATGCATGTAACTAGGCTAAGGTATGTTTGATGATGTTCCATGAGATGCATGCATGTTTTAGTT-
32162658 TTAGCTTGAGTTCTACCTAGCCCATGGTCTAAATCTTGCTATGTGATGGAAATGACACTCGGCCA
257 TTAGCTTGAGTTCTACCTAGCCCATGGTCTAAATCTTGCTATGTGATGGAAATGACACTCGGCCA
32162723 T-GATGCATCATTCTTGCTTGGTGTTGATGTTGTGTTGGTGAGATATCAAGTTATTTT
322 TGGATGCATCATTCTTGCTTGGTGTTGATGTTGTGTTGGTGAGATATCAAGTTATTTT
32162780 TGTGACCAAG
Statistics
Matches: 368, Mismatches: 2, Indels: 14
0.96 0.01 0.04
Matches are distributed among these distances:
373 10 0.03
374 138 0.38
375 69 0.19
377 6 0.02
378 76 0.21
379 54 0.15
380 15 0.04
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (379 bp):
AAGAGCATGGGCAATAAAATATTAGTGTTAGTAGGATGAGAAAAAAAAAAAAAAAAGAAAGGATG
TGTGTGATTGTCCCCCCATTGCCGTGAGTTGAAGGAAAGAAAAAAAAAAAAAAAGTGTTCATCCT
TTGGTTCATCCTTGGCCGAAAATTTTAAGAGGAAGGAAGAAGAAAGGTTGAAGAGGTTCGGCCAT
GCATGTAACTAGGCTAAGGTATGTTTGATGATGTTCCATGAGATGCATGCATGTTTTAGTTTTAG
CTTGAGTTCTACCTAGCCCATGGTCTAAATCTTGCTATGTGATGGAAATGACACTCGGCCATGGA
TGCATCATTCTTGCTTGGTGTTGATGTTGTGTTGGTGAGATATCAAGTTATTTT
Found at i:32163852 original size:39 final size:41
Alignment explanation
Indices: 32163751--32163934 Score: 222
Period size: 39 Copynumber: 4.6 Consensus size: 41
32163741 TCGAATGATG
* * *
32163751 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
32163791 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
32163831 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
32163870 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
32163909 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32163935 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
38 1 0.01
39 68 0.54
40 46 0.37
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:32163952 original size:79 final size:78
Alignment explanation
Indices: 32163788--32163967 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 78
32163778 CTAAGTGACC
** *
32163788 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCAT
**
32163853 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* *
32163867 AAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCA
1 ATATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCA
*
32163931 TTTGAACGAG-TAGCT
64 TTGGAACGAGTTA-CT
*
32163946 ATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGTT-AAGTCCGAAGG
32163968 TACGGGATGA
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
77 2 0.02
78 40 0.46
79 45 0.52
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
ATATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:32171847 original size:39 final size:41
Alignment explanation
Indices: 32171746--32171929 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
32171736 TCGAATGATG
* * *
32171746 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
32171786 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
32171826 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
32171865 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
32171904 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32171930 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
38 9 0.07
39 51 0.41
40 55 0.44
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:32178043 original size:40 final size:40
Alignment explanation
Indices: 32177983--32178141 Score: 210
Period size: 40 Copynumber: 4.0 Consensus size: 40
32177973 CTTTGATTTT
* * * *
32177983 AAGCTATCTCAAATCACACACTAAATGTCATATATAGCCG
1 AAGCTATGTCAAATCGCACACTAAGTGCCATATATAGCCG
* *
32178023 AAGCTATGTCGAATTGCACACTAAGTGCCATATATAGCCG
1 AAGCTATGTCAAATCGCACACTAAGTGCCATATATAGCCG
* *
32178063 AAACTATGTCAAATCGCACACTAAGTGCCATATATAACCG
1 AAGCTATGTCAAATCGCACACTAAGTGCCATATATAGCCG
* * * *
32178103 ATGCTATGTCAAATCGTACACTAAGTGCCACAAATAGCC
1 AAGCTATGTCAAATCGCACACTAAGTGCCATATATAGCC
32178142 AATTTGTTGT
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (40 bp):
AAGCTATGTCAAATCGCACACTAAGTGCCATATATAGCCG
Found at i:32185490 original size:40 final size:40
Alignment explanation
Indices: 32185430--32185567 Score: 195
Period size: 40 Copynumber: 3.5 Consensus size: 40
32185420 GATATCTCAT
* * * * *
32185430 ACACTAAGTGTCGTACATAGCTGAAGCTATCTCAAATCGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCGC
* *
32185470 ACACTAAGTTCCATATATAGCCGAAGCTATGTCGAATCGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCGC
* *
32185510 ACACTAAGTGCCATATATAGCCAAAGCTATGTTAAATCGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCGC
32185550 ACACTAAGTGCCATATAT
1 ACACTAAGTGCCATATAT
32185568 TGTCGTCGAA
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
ACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCGC
Found at i:32192389 original size:20 final size:20
Alignment explanation
Indices: 32192353--32192395 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
32192343 TTATGTTAAA
*
32192353 TAAATGGAATAGAAAGTAAG
1 TAAATGGAATAAAAAGTAAG
*
32192373 TAAATGGAA-AAACAAGTATG
1 TAAATGGAATAAA-AAGTAAG
32192393 TAA
1 TAA
32192396 GTAAAGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.56, C:0.02, G:0.21, T:0.21
Consensus pattern (20 bp):
TAAATGGAATAAAAAGTAAG
Found at i:32194975 original size:3 final size:3
Alignment explanation
Indices: 32194967--32195012 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
32194957 TTCTCCACAC
32194967 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
32195013 GAGAGTGACT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32207086 original size:61 final size:61
Alignment explanation
Indices: 32206958--32207244 Score: 200
Period size: 61 Copynumber: 4.7 Consensus size: 61
32206948 ATTTCCTTGT
* * * * * * * *
32206958 ACCACAAAGGCTTACCTTTCCAAAGTTTCT-CCACAAAAGC-ATCTTTTACATTCAATACTC
1 ACCACAAAGGCTTTCATGTCCAGAGTTT-TACCACAAAAGCTGTCCTTTACATCCAGTACTC
* * * * * * * * *
32207018 GCTACAAAGACTTTCTTGTTCAGAGATTTACCACAAAAGCTGTTCTTTACATCTAGTATTC
1 ACCACAAAGGCTTTCATGTCCAGAGTTTTACCACAAAAGCTGTCCTTTACATCCAGTACTC
* * * * * * * *
32207079 ACCACAAAGGCTTTCCTCTCCAGATTTTTTCCATAAAGGTTGTCCTTTACATCCATTACTC
1 ACCACAAAGGCTTTCATGTCCAGAGTTTTACCACAAAAGCTGTCCTTTACATCCAGTACTC
* * * * * *
32207140 GCCACAAAGGCTTTCATGTCCAGAGTTTTACCACAAAGGTTGTCATTTACATCCAATACTT
1 ACCACAAAGGCTTTCATGTCCAGAGTTTTACCACAAAAGCTGTCCTTTACATCCAGTACTC
* * * * * * * *
32207201 GCCATAAAGGCTTTCTTGTCTAGAATTTTGCCATAAAGGCTGTC
1 ACCACAAAGGCTTTCATGTCCAGAGTTTTACCACAAAAGCTGTC
32207245 ATTTTTTAGG
Statistics
Matches: 177, Mismatches: 48, Indels: 3
0.78 0.21 0.01
Matches are distributed among these distances:
59 1 0.01
60 29 0.16
61 147 0.83
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (61 bp):
ACCACAAAGGCTTTCATGTCCAGAGTTTTACCACAAAAGCTGTCCTTTACATCCAGTACTC
Found at i:32207235 original size:122 final size:122
Alignment explanation
Indices: 32207002--32207244 Score: 283
Period size: 122 Copynumber: 2.0 Consensus size: 122
32206992 AAAAGCATCT
* * * *
32207002 TTTACATTCAATACTCGCTACAAAGACTTTCTTGTTCAGAGATTTACCACAAAAGCTGTTCTTTA
1 TTTACATCCAATACTCGCCACAAAGACTTTCATGTCCAGAGATTTACCACAAAAGCTGTTCTTTA
* * * * *
32207067 CATCTAGTATTCACCACAAAGGCTTTCCTCTCCAGATTTTTTCCATAAAGGTTGTCC
66 CATCCAATATTCACCACAAAGGCTTTCCTCTCCAGAATTTTGCCATAAAGGCTGTCC
* * * * *
32207124 TTTACATCCATTACTCGCCACAAAGGCTTTCATGTCCAGAGTTTTACCACAAAGGTTG-TCATTT
1 TTTACATCCAATACTCGCCACAAAGACTTTCATGTCCAGAGATTTACCACAAAAGCTGTTC-TTT
* * * * *
32207188 ACATCCAATACTT-GCCATAAAGGCTTTCTTGTCTAGAATTTTGCCATAAAGGCTGTC
65 ACATCCAATA-TTCACCACAAAGGCTTTCCTCTCCAGAATTTTGCCATAAAGGCTGTC
32207245 ATTTTTTAGG
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
121 2 0.02
122 96 0.96
123 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (122 bp):
TTTACATCCAATACTCGCCACAAAGACTTTCATGTCCAGAGATTTACCACAAAAGCTGTTCTTTA
CATCCAATATTCACCACAAAGGCTTTCCTCTCCAGAATTTTGCCATAAAGGCTGTCC
Found at i:32207245 original size:61 final size:61
Alignment explanation
Indices: 32207002--32207248 Score: 228
Period size: 61 Copynumber: 4.0 Consensus size: 61
32206992 AAAAGCATCT
* * * * * * * *
32207002 TTTACATTCAATACTCGCTACAAAGACTTTCTTGTTCAGAGA-TTTACCACAAAAGCTGTTC-
1 TTTACATCCAATACTCGCCACAAAGGCTTTCATGTCCAGA-ATTTTACCATAAAGGTTG-TCA
* * * * * * * * *
32207063 TTTACATCTAGTATTCACCACAAAGGCTTTCCTCTCCAGATTTTTTCCATAAAGGTTGTCC
1 TTTACATCCAATACTCGCCACAAAGGCTTTCATGTCCAGAATTTTACCATAAAGGTTGTCA
* * *
32207124 TTTACATCCATTACTCGCCACAAAGGCTTTCATGTCCAGAGTTTTACCACAAAGGTTGTCA
1 TTTACATCCAATACTCGCCACAAAGGCTTTCATGTCCAGAATTTTACCATAAAGGTTGTCA
* * * * * *
32207185 TTTACATCCAATACTTGCCATAAAGGCTTTCTTGTCTAGAATTTTGCCATAAAGGCTGTCA
1 TTTACATCCAATACTCGCCACAAAGGCTTTCATGTCCAGAATTTTACCATAAAGGTTGTCA
32207246 TTT
1 TTT
32207249 TTTAGGTGTT
Statistics
Matches: 150, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
60 2 0.01
61 148 0.99
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (61 bp):
TTTACATCCAATACTCGCCACAAAGGCTTTCATGTCCAGAATTTTACCATAAAGGTTGTCA
Done.