Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 109 of 410
Found at i:32213961 original size:25 final size:25
Alignment explanation
Indices: 32213933--32213980 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32213923 TTATGCCATG
* * *
32213933 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
32213958 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
32213981 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:32214049 original size:20 final size:20
Alignment explanation
Indices: 32214024--32214063 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32214014 TGAATATGGC
32214024 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAT
32214044 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAT
32214064 GTAATCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
ATGTATGATATGCACATGAT
Found at i:32214140 original size:24 final size:24
Alignment explanation
Indices: 32214113--32214255 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
32214103 GAGGAAGTGA
32214113 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
32214137 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
32214161 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
32214184 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
32214208 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
32214232 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
32214256 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 3, Indels: 5
0.93 0.02 0.04
Matches are distributed among these distances:
23 23 0.20
24 79 0.70
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:32214206 original size:47 final size:47
Alignment explanation
Indices: 32214113--32214255 Score: 216
Period size: 47 Copynumber: 3.0 Consensus size: 47
32214103 GAGGAAGTGA
32214113 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
32214161 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* *
32214208 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
32214256 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
47 44 0.49
48 34 0.38
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:32214229 original size:71 final size:72
Alignment explanation
Indices: 32214113--32214256 Score: 229
Period size: 71 Copynumber: 2.0 Consensus size: 72
32214103 GAGGAAGTGA
*
32214113 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
32214176 CCAGTTAT
65 CCAGTTAT
* * *
32214184 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
32214249 CAGTTAT
66 CAGTTAT
32214256 A
1 A
32214257 TGATAAAGCA
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
71 55 0.82
72 12 0.18
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:32214482 original size:31 final size:31
Alignment explanation
Indices: 32214447--32214510 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32214437 CGTTTACAGT
32214447 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
32214478 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
32214509 AA
1 AA
32214511 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:32218532 original size:43 final size:42
Alignment explanation
Indices: 32218478--32218572 Score: 107
Period size: 34 Copynumber: 2.4 Consensus size: 42
32218468 GGTATACGAT
*
32218478 GTAAGAATATAGATGAAAATGATATAACAGTTAGGTATAATGA
1 GTAAGACTATAGATGAAAA-GATATAACAGTTAGGTATAATGA
*
32218521 GTAAGAC--T--AT----AGATATAACAGTTAGGTATGATGA
1 GTAAGACTATAGATGAAAAGATATAACAGTTAGGTATAATGA
32218555 GTAAGACTATAGATGAAA
1 GTAAGACTATAGATGAAA
32218573 GACTCCATGA
Statistics
Matches: 42, Mismatches: 2, Indels: 17
0.69 0.03 0.28
Matches are distributed among these distances:
34 29 0.69
35 1 0.02
36 1 0.02
38 2 0.05
39 2 0.05
41 1 0.02
43 6 0.14
ACGTcount: A:0.46, C:0.04, G:0.22, T:0.27
Consensus pattern (42 bp):
GTAAGACTATAGATGAAAAGATATAACAGTTAGGTATAATGA
Found at i:32218541 original size:34 final size:34
Alignment explanation
Indices: 32218498--32218568 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
32218488 AGATGAAAAT
32218498 GATATAACAGTTAGGTATAATGAGTAAGACTATA
1 GATATAACAGTTAGGTATAATGAGTAAGACTATA
*
32218532 GATATAACAGTTAGGTATGATGAGTAAGACTATA
1 GATATAACAGTTAGGTATAATGAGTAAGACTATA
32218566 GAT
1 GAT
32218569 GAAAGACTCC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.30
Consensus pattern (34 bp):
GATATAACAGTTAGGTATAATGAGTAAGACTATA
Found at i:32221736 original size:26 final size:27
Alignment explanation
Indices: 32221700--32221754 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
32221690 ATAGATGTTA
*
32221700 TTATCATTTTA-TGGCTTTATTTTGAC
1 TTATCATTTTATTGGCTGTATTTTGAC
32221726 TTATCATTTTATTGGCTGTATTTTGAC
1 TTATCATTTTATTGGCTGTATTTTGAC
32221753 TT
1 TT
32221755 GAATAATTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.18, C:0.11, G:0.13, T:0.58
Consensus pattern (27 bp):
TTATCATTTTATTGGCTGTATTTTGAC
Found at i:32222467 original size:27 final size:27
Alignment explanation
Indices: 32222436--32222534 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
32222426 ATTGAGTATG
32222436 CCACAAAGG-TAGTTCTTACAGAGTTCA
1 CCACAAAGGATA-TTCTTACAGAGTTCA
* *
32222463 CCACAAAGGCTATTCTTTCAGAGTTCA
1 CCACAAAGGATATTCTTACAGAGTTCA
* * *
32222490 CCACAAACGTTATTCTTTA-AGAGTTAA
1 CCACAAAGGATATTC-TTACAGAGTTCA
*
32222517 CCATAAAGGATATTCTTA
1 CCACAAAGGATATTCTTA
32222535 GCAATCGTGT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
26 3 0.05
27 55 0.89
28 4 0.06
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (27 bp):
CCACAAAGGATATTCTTACAGAGTTCA
Found at i:32224935 original size:30 final size:30
Alignment explanation
Indices: 32224901--32224970 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
32224891 CAAAGGCTTT
32224901 CTTTATAGAGGTTCGCCAGAAACACTTTT-C
1 CTTTATAGAGGTTCGCCAGAAA-ACTTTTGC
* * * **
32224931 CTTTAAAGAGGTTTGCCATAAAGGTTTTGC
1 CTTTATAGAGGTTCGCCAGAAAACTTTTGC
32224961 CTTTATAGAG
1 CTTTATAGAG
32224971 TCTTGACACA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 4 0.12
30 29 0.88
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (30 bp):
CTTTATAGAGGTTCGCCAGAAAACTTTTGC
Found at i:32230223 original size:20 final size:20
Alignment explanation
Indices: 32230198--32230251 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
32230188 AAACAAGGTC
32230198 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
32230218 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
*
32230238 ACACGTCCGTGTGG
1 ACACGCCCGTGTGG
32230252 GTGACCACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.11, C:0.30, G:0.39, T:0.20
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:32230719 original size:112 final size:112
Alignment explanation
Indices: 32230530--32230745 Score: 378
Period size: 112 Copynumber: 1.9 Consensus size: 112
32230520 CCTTATTTAC
* *
32230530 ACCAACCTACACAGCAACAAGCATCACCAATCCAAGCATATACATACAACCAAATTAACCACAAA
1 ACCAACCTACACAACAACAAGCATCACCAATCCAAGCATATACATACAACCAAATCAACCACAAA
32230595 CAAGATATCGATACATCATTTGCACATACTAACATCTATTTATTTGT
66 CAAGATATCGATACATCATTTGCACATACTAACATCTATTTATTTGT
* * * *
32230642 ACCAACCTACACAATAACAAGCATCACTAATCTAAGCATATACATACAACCAAATCAGCCACAAA
1 ACCAACCTACACAACAACAAGCATCACCAATCCAAGCATATACATACAACCAAATCAACCACAAA
32230707 CAAGATATCGATACATCATTTGCACATACTAACATCTAT
66 CAAGATATCGATACATCATTTGCACATACTAACATCTAT
32230746 CATGCCTAAA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 98 1.00
ACGTcount: A:0.44, C:0.28, G:0.06, T:0.22
Consensus pattern (112 bp):
ACCAACCTACACAACAACAAGCATCACCAATCCAAGCATATACATACAACCAAATCAACCACAAA
CAAGATATCGATACATCATTTGCACATACTAACATCTATTTATTTGT
Found at i:32232531 original size:17 final size:17
Alignment explanation
Indices: 32232509--32232566 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
32232499 TTTTTCTATA
32232509 CTAATTTATCTAATGGT
1 CTAATTTATCTAATGGT
* * **
32232526 CTAA-TTACCAACTATGCA
1 CTAATTTATCTA--ATGGT
32232544 CTAATTTATCTAATGGT
1 CTAATTTATCTAATGGT
32232561 CTAATT
1 CTAATT
32232567 ACCAACTAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
16 5 0.17
17 13 0.43
18 7 0.23
19 5 0.17
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (17 bp):
CTAATTTATCTAATGGT
Found at i:32232554 original size:35 final size:35
Alignment explanation
Indices: 32232508--32232574 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
32232498 ATTTTTCTAT
32232508 ACTAATTTATCTAATGGTCTAATTACCAACTATGC
1 ACTAATTTATCTAATGGTCTAATTACCAACTATGC
32232543 ACTAATTTATCTAATGGTCTAATTACCAACTA
1 ACTAATTTATCTAATGGTCTAATTACCAACTA
32232575 AAGACCTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.37
Consensus pattern (35 bp):
ACTAATTTATCTAATGGTCTAATTACCAACTATGC
Found at i:32235069 original size:29 final size:28
Alignment explanation
Indices: 32235037--32235139 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
32235027 GTGACGAGAT
* *
32235037 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
32235066 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
32235095 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
32235124 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32235140 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:32242951 original size:17 final size:18
Alignment explanation
Indices: 32242909--32242957 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
32242899 AGTTGAAAAG
32242909 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
32242928 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
32242945 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
32242958 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:32243840 original size:40 final size:40
Alignment explanation
Indices: 32243774--32243940 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
32243764 AAATTGAATG
* * *
32243774 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
32243813 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
32243853 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
32243893 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
32243933 ATATCCGG
1 ATATCCGG
32243941 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:32251549 original size:29 final size:28
Alignment explanation
Indices: 32251517--32251619 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
32251507 GTGACGAGAT
* *
32251517 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
32251546 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
32251575 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
32251604 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32251620 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:32259291 original size:29 final size:28
Alignment explanation
Indices: 32259259--32259361 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
32259249 GTGACGAGAT
* *
32259259 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
32259288 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
32259317 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
32259346 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32259362 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:32262915 original size:53 final size:54
Alignment explanation
Indices: 32262834--32263038 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
32262824 TTTCCTTTTT
* * * * *
32262834 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGTCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
32262887 GAACTCACCAATG-CTATGCCTTGGCATGGTCTTACACGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGTC-ATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * * * *
32262941 GTAATTCATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGTCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * *
32262996 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATC
1 GAACTCACCAATGTCATGCCTTGACATGGTCTTACATGGTATC
32263039 ATTATCTTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 3 0.02
53 41 0.33
54 38 0.30
55 41 0.33
56 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGTCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:32262974 original size:55 final size:53
Alignment explanation
Indices: 32262848--32263033 Score: 198
Period size: 55 Copynumber: 3.5 Consensus size: 53
32262838 TTACCATTGC
* * * *
32262848 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATG-
1 CATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAATTCATCAATGT
* * *
32262900 CTATGCCTTGGCATGGTCTTACACGGGACCTTTGCCTTATAGTAATTCATCAATGT
1 C-ATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AATTCATCAATGT
* * *
32262956 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTT-ATCAATGT
1 CATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA-TTCATCAATGT
*
32263010 CATGCCTTGGCATGGTCTTACATG
1 CATGCCTTGACATGGTCTTACATG
32263034 ATATCATTAT
Statistics
Matches: 112, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
52 3 0.03
53 30 0.27
54 33 0.29
55 43 0.38
56 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
CATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAATTCATCAATGT
Found at i:32263094 original size:47 final size:47
Alignment explanation
Indices: 32263020--32263141 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
32263010 CATGCCTTGG
* * * *
32263020 CATGGTCTTACATGATATCATTATCTTACCAAATGCCATGTTGCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
32263067 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
32263114 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
32263142 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:32263215 original size:47 final size:47
Alignment explanation
Indices: 32263145--32263277 Score: 130
Period size: 45 Copynumber: 2.9 Consensus size: 47
32263135 TGTCTTAGTG
** * * *
32263145 CCAATGCCACATCTTGATGTGGTCTTACATGGAGTCCTTAATCAATG
1 CCAATGCCATGTCTTGATATGGTCTTACATGGAGTCCTTAAGCAATA
* * **
32263192 CCGATGCCATGTCTTGATATGGTCTTACACGG-GATCCTT--GCCTTA
1 CCAATGCCATGTCTTGATATGGTCTTACATGGAG-TCCTTAAGCAATA
*
32263237 CCAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTTAA
1 CCAATGCCATGTCTTGATATGGTCTTACATGG-AGTCCTTAA
32263278 CCGTCAATTC
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
45 36 0.52
46 1 0.01
47 32 0.46
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.33
Consensus pattern (47 bp):
CCAATGCCATGTCTTGATATGGTCTTACATGGAGTCCTTAAGCAATA
Found at i:32263581 original size:8 final size:8
Alignment explanation
Indices: 32263568--32263592 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
32263558 AATACTTTCT
32263568 TATAAAAG
1 TATAAAAG
32263576 TATAAAAG
1 TATAAAAG
32263584 TATAAAAG
1 TATAAAAG
32263592 T
1 T
32263593 TCTCTTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (8 bp):
TATAAAAG
Found at i:32266125 original size:15 final size:15
Alignment explanation
Indices: 32266105--32266148 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
32266095 CAATTTCTCA
32266105 CATTTTCAATTCAAT
1 CATTTTCAATTCAAT
* *
32266120 CATTTTCCACTCAAT
1 CATTTTCAATTCAAT
32266135 CAATTTTCAATTCA
1 C-ATTTTCAATTCA
32266149 CATATTCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.32, C:0.25, G:0.00, T:0.43
Consensus pattern (15 bp):
CATTTTCAATTCAAT
Found at i:32267014 original size:12 final size:12
Alignment explanation
Indices: 32266999--32267029 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
32266989 TTCTCTTTTA
32266999 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
32267011 TTTTTCTTTCTC
1 TTTTTCTTTCCC
32267023 TTTTTCT
1 TTTTTCT
32267030 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:32267747 original size:13 final size:13
Alignment explanation
Indices: 32267729--32267753 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32267719 TACTACTAGA
32267729 CTTATAATTATTC
1 CTTATAATTATTC
32267742 CTTATAATTATT
1 CTTATAATTATT
32267754 TACGAACTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (13 bp):
CTTATAATTATTC
Found at i:32271419 original size:44 final size:44
Alignment explanation
Indices: 32271350--32271441 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
32271340 TCGATGTAAC
32271350 AGTAACAGTACGACACGCAAGGTGCCTCATCGACTCGAA-GTCAA
1 AGTAACAGTACGACACGCAAGGTGCCTCATCGACTC-AAGGTCAA
**
32271394 AGTAACAGTACGACACTTATA-GTGCCTCATCGACTCAAGGTCAA
1 AGTAACAGTACGACACGCA-AGGTGCCTCATCGACTCAAGGTCAA
32271438 AGTA
1 AGTA
32271442 TCCTTGAACA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 2 0.05
44 41 0.93
45 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.20
Consensus pattern (44 bp):
AGTAACAGTACGACACGCAAGGTGCCTCATCGACTCAAGGTCAA
Found at i:32271763 original size:23 final size:22
Alignment explanation
Indices: 32271705--32271763 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 22
32271695 CAATTTCCAC
* *
32271705 ATCAATCACATATATCCATATAA
1 ATCAATC-CATTTATCCATACAA
**
32271728 ATTCAATAAATTTATCACATACAA
1 A-TCAATCCATTTATC-CATACAA
32271752 ATCAATCCATTT
1 ATCAATCCATTT
32271764 CAATTGTAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
23 16 0.57
24 12 0.43
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (22 bp):
ATCAATCCATTTATCCATACAA
Found at i:32272128 original size:11 final size:12
Alignment explanation
Indices: 32272105--32272133 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
32272095 TTAATATTTA
32272105 AATTTCTTATTC
1 AATTTCTTATTC
32272117 AATTTC-TATTC
1 AATTTCTTATTC
32272128 AATTTC
1 AATTTC
32272134 CACTTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (12 bp):
AATTTCTTATTC
Found at i:32272564 original size:17 final size:18
Alignment explanation
Indices: 32272530--32272567 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
32272520 AAATCCCTAA
32272530 TTTTTCCTTTTTCTTTTC
1 TTTTTCCTTTTTCTTTTC
32272548 TTTTT-CTTCTTTC-TTTC
1 TTTTTCCTT-TTTCTTTTC
32272565 TTT
1 TTT
32272568 CTTTCCCGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTCCTTTTTCTTTTC
Found at i:32272627 original size:2 final size:2
Alignment explanation
Indices: 32272620--32272664 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
32272610 TGTTTTATGT
32272620 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32272662 TA T
1 TA T
32272665 TATTTTATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:32272973 original size:17 final size:18
Alignment explanation
Indices: 32272942--32272976 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
32272932 AATTTAATTA
*
32272942 TTTTATCTAATAAATATC
1 TTTTATCTAAAAAATATC
32272960 TTTTA-CTAAAAAATATC
1 TTTTATCTAAAAAATATC
32272977 ACAACTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTTATCTAAAAAATATC
Found at i:32275780 original size:27 final size:27
Alignment explanation
Indices: 32275750--32275836 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
32275740 CAAAACGGTA
** * *
32275750 ATTCTTTCAGAGTTCACCGCAAAGGCT
1 ATTCTTTCAGAGTTTGCCACAAAGGTT
*
32275777 ATTCTTTTAGAGTTTGCCACAAAGGTT
1 ATTCTTTCAGAGTTTGCCACAAAGGTT
*
32275804 ATTCTTTCAAAGTTTGCCACAAAGGTT
1 ATTCTTTCAGAGTTTGCCACAAAGGTT
32275831 ATTCTT
1 ATTCTT
32275837 AGTAGTCATG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (27 bp):
ATTCTTTCAGAGTTTGCCACAAAGGTT
Found at i:32287395 original size:26 final size:26
Alignment explanation
Indices: 32287364--32287417 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
32287354 AAATATATGG
32287364 TAAGCTAAATTCCTGTTATATGAACT
1 TAAGCTAAATTCCTGTTATATGAACT
32287390 TAAGCTAAATTCCTGTTATATGAACT
1 TAAGCTAAATTCCTGTTATATGAACT
32287416 TA
1 TA
32287418 CTAAGCATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (26 bp):
TAAGCTAAATTCCTGTTATATGAACT
Found at i:32288608 original size:23 final size:23
Alignment explanation
Indices: 32288578--32288626 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
32288568 ACTTGTTACT
32288578 ATGCTCAAGTCATCAGCTTTTCA
1 ATGCTCAAGTCATCAGCTTTTCA
32288601 ATGCTCAAGTCATCAGCTTTTCA
1 ATGCTCAAGTCATCAGCTTTTCA
32288624 ATG
1 ATG
32288627 TAAACACTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (23 bp):
ATGCTCAAGTCATCAGCTTTTCA
Found at i:32290529 original size:24 final size:24
Alignment explanation
Indices: 32290492--32290539 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
32290482 ATTATATTTG
32290492 AATTTAAAAATTTTAAAAATAAAA
1 AATTTAAAAATTTTAAAAATAAAA
* *
32290516 AATTTTAAATTTTTAAAAATAAAA
1 AATTTAAAAATTTTAAAAATAAAA
32290540 GAACATAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AATTTAAAAATTTTAAAAATAAAA
Found at i:32292766 original size:14 final size:14
Alignment explanation
Indices: 32292747--32292780 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
32292737 TTATTAATTT
32292747 ATTTAAAAATTTTC
1 ATTTAAAAATTTTC
32292761 ATTT-AAAATTTTC
1 ATTTAAAAATTTTC
32292774 ATTTAAA
1 ATTTAAA
32292781 TCATTAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTAAAAATTTTC
Found at i:32299671 original size:13 final size:13
Alignment explanation
Indices: 32299655--32299685 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32299645 TAAACTAAAT
32299655 TTTTCCACAGCAC
1 TTTTCCACAGCAC
*
32299668 TTTTCCACGGCAC
1 TTTTCCACAGCAC
32299681 TTTTC
1 TTTTC
32299686 AAAATCATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.35, G:0.10, T:0.39
Consensus pattern (13 bp):
TTTTCCACAGCAC
Found at i:32304425 original size:29 final size:29
Alignment explanation
Indices: 32304392--32304465 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
32304382 GTGACGAGAT
32304392 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
32304421 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
32304450 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32304466 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:32304481 original size:29 final size:28
Alignment explanation
Indices: 32304449--32304523 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
32304439 CTGGAAATAT
* *
32304449 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
32304478 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
32304506 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
32304524 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:32304492 original size:58 final size:57
Alignment explanation
Indices: 32304392--32304523 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
32304382 GTGACGAGAT
* * * * * *
32304392 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
32304450 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
32304507 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
32304524 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:32312300 original size:29 final size:29
Alignment explanation
Indices: 32312267--32312340 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
32312257 GTGACGAGAT
32312267 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
32312296 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
32312325 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32312341 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:32312356 original size:29 final size:29
Alignment explanation
Indices: 32312324--32312399 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
32312314 CTGGAAATAT
* *
32312324 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
32312353 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
32312382 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
32312400 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:32312367 original size:58 final size:58
Alignment explanation
Indices: 32312267--32312399 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
32312257 GTGACGAGAT
* * * * * *
32312267 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
32312325 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
32312383 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
32312400 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:32316502 original size:17 final size:17
Alignment explanation
Indices: 32316473--32316528 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
32316463 TAATTTCTAT
32316473 CATTTATCA-TTGTCGGG
1 CATTTA-CATTTGTCGGG
*
32316490 CATTATA-ATTTGTCGGA
1 CATT-TACATTTGTCGGG
*
32316507 CATTTACATTTATCGGG
1 CATTTACATTTGTCGGG
32316524 C-TTTA
1 CATTTA
32316529 ACGAGTATGC
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 7 0.21
17 24 0.73
18 2 0.06
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (17 bp):
CATTTACATTTGTCGGG
Found at i:32321639 original size:2 final size:2
Alignment explanation
Indices: 32321632--32321657 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32321622 TCAACTACTT
32321632 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
32321658 TATATATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:32324114 original size:40 final size:40
Alignment explanation
Indices: 32324070--32324250 Score: 188
Period size: 40 Copynumber: 4.5 Consensus size: 40
32324060 GCTTGATTGT
* * *
32324070 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGC
*
32324110 CTTCGGGA-ATTAGCTCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
32324150 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
32324190 CTTCGGGA-ATTAACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAAC-TCGCACAAATGC
*
32324231 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACATAGCCCGGAT
32324251 ACCATTCGAA
Statistics
Matches: 118, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
39 1 0.01
40 88 0.75
41 29 0.25
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:32324169 original size:80 final size:81
Alignment explanation
Indices: 32324070--32324248 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 81
32324060 GCTTGATTGT
* * * * * *
32324070 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCTCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
* *
32324135 AAC-TCGCACAAATGC
66 AACTTAGCACAAAAGC
* * *
32324150 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
*
32324215 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
32324231 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
32324249 ATACCATTCG
Statistics
Matches: 85, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 58 0.68
81 27 0.32
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:32324237 original size:41 final size:40
Alignment explanation
Indices: 32324098--32324250 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
32324088 TTATAGTGAT
* * *
32324098 TCGCACAATTGCCTTCGGGAATTAGCTCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * *
32324138 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
*
32324178 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * * *
32324218 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -TCGCACAAATGCCTTCGGGAATTAACCCGGAT
32324251 ACCATTCGAA
Statistics
Matches: 98, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 70 0.71
41 28 0.29
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
Found at i:32330417 original size:10 final size:10
Alignment explanation
Indices: 32330398--32330444 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
32330388 TTCTCAATTC
32330398 ATCA-ACCAA
1 ATCATACCAA
32330407 ATCATACCAA
1 ATCATACCAA
*
32330417 ATCTAAACCAAA
1 ATC-ATACC-AA
32330429 ATCATACCAA
1 ATCATACCAA
32330439 ATCATA
1 ATCATA
32330445 TGTTTCAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 4 0.12
10 16 0.48
11 8 0.24
12 5 0.15
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (10 bp):
ATCATACCAA
Found at i:32330433 original size:22 final size:21
Alignment explanation
Indices: 32330401--32330441 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
32330391 TCAATTCATC
32330401 AACCAAATCATACCAAATCTA
1 AACCAAATCATACCAAATCTA
32330422 AACCAAAATCATACCAAATC
1 AACC-AAATCATACCAAATC
32330442 ATATGTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.54, C:0.29, G:0.00, T:0.17
Consensus pattern (21 bp):
AACCAAATCATACCAAATCTA
Found at i:32331264 original size:42 final size:43
Alignment explanation
Indices: 32331154--32331282 Score: 154
Period size: 43 Copynumber: 3.0 Consensus size: 43
32331144 AAAGCTCGTA
* *
32331154 CAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATAT
* * *
32331197 CAATGCCACTGTCCCAGACAG-GGTCTTACACGAAATTAAGTAT
1 CAATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAATAT
* * * *
32331240 -GATGCCAATGTCCCAGGCGTGGTCTTACACGAAAACACATAT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATAT
32331282 C
1 C
32331283 GGATCCTATG
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 33 0.46
43 36 0.51
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATAT
Found at i:32334767 original size:39 final size:40
Alignment explanation
Indices: 32334662--32334842 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
32334652 TATTCGAATG
32334662 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
32334702 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
32334742 ATATCCGGGC-AAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32334781 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
32334821 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32334843 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
39 52 0.39
40 79 0.59
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:32334794 original size:79 final size:80
Alignment explanation
Indices: 32334662--32334842 Score: 296
Period size: 79 Copynumber: 2.3 Consensus size: 80
32334652 TATTCGAATG
*
32334662 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
32334727 TTTGTGCTAG-TGACT
66 TTTGTGCGAGTTG-CT
*
32334742 ATATCCGGGC-AAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
32334806 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
*
32334821 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32334843 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
78 3 0.03
79 80 0.84
80 12 0.13
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:32342806 original size:40 final size:40
Alignment explanation
Indices: 32342746--32342927 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
32342736 TATTCGAATG
*
32342746 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
32342786 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32342826 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32342866 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
32342906 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32342928 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.11
40 114 0.88
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:32358072 original size:21 final size:22
Alignment explanation
Indices: 32358032--32358074 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
32358022 TTTATATTAA
32358032 TTATATTAAAAGATTTTTATTT
1 TTATATTAAAAGATTTTTATTT
*
32358054 TTATATTAAAATA-TTTTATTT
1 TTATATTAAAAGATTTTTATTT
32358075 ACTGCATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TTATATTAAAAGATTTTTATTT
Found at i:32358412 original size:2 final size:2
Alignment explanation
Indices: 32358405--32358434 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
32358395 GAAACACAAA
32358405 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32358435 GTTACTTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32364539 original size:36 final size:36
Alignment explanation
Indices: 32364499--32364571 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
32364489 CAATCGAAAT
32364499 AGGTACTGTTCCCGGCACTATGTCAATGCTAAATTC
1 AGGTACTGTTCCCGGCACTATGTCAATGCTAAATTC
32364535 AGGTACTGTTCCCGGCACTATGTCAATGCTAAATTC
1 AGGTACTGTTCCCGGCACTATGTCAATGCTAAATTC
32364571 A
1 A
32364572 ACTTCTCTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (36 bp):
AGGTACTGTTCCCGGCACTATGTCAATGCTAAATTC
Found at i:32369917 original size:126 final size:126
Alignment explanation
Indices: 32369692--32369943 Score: 468
Period size: 126 Copynumber: 2.0 Consensus size: 126
32369682 TCATCTAAAA
32369692 ATCTAATGAAGAATGAGAATTAAGAAACATAAAAATGCGATGCATATATTTGATTAGCAACTTGT
1 ATCTAATGAAGAATGAGAATTAAGAAACATAAAAATGCGATGCATATATTTGATTAGCAACTTGT
* *
32369757 CTTATTCAATTTCGGAAGAGATGAAAAGTTGAATTATAGTGTACTTCTAAATAGTATGCAG
66 CCTATTCAATTTCGGAAGAGATGAAAAGTTGAATTATAGTGTACTTATAAATAGTATGCAG
* *
32369818 ATCTAATGAAGAATGAGAATTAAGCAACATAAAAATGCGATGTATATATTTGATTAGCAACTTGT
1 ATCTAATGAAGAATGAGAATTAAGAAACATAAAAATGCGATGCATATATTTGATTAGCAACTTGT
32369883 CCTATTCAATTTCGGAAGAGATGAAAAGTTGAATTATAGTGTACTTATAAATAGTATGCAG
66 CCTATTCAATTTCGGAAGAGATGAAAAGTTGAATTATAGTGTACTTATAAATAGTATGCAG
32369944 TTGAATTACT
Statistics
Matches: 122, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 122 1.00
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.32
Consensus pattern (126 bp):
ATCTAATGAAGAATGAGAATTAAGAAACATAAAAATGCGATGCATATATTTGATTAGCAACTTGT
CCTATTCAATTTCGGAAGAGATGAAAAGTTGAATTATAGTGTACTTATAAATAGTATGCAG
Found at i:32385267 original size:20 final size:19
Alignment explanation
Indices: 32385238--32385275 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
32385228 GACCAAATCA
*
32385238 AATTAATCCTTTTATTATT
1 AATTAATCCTTATATTATT
32385257 AATTCAATCCTTATATTAT
1 AATT-AATCCTTATATTAT
32385276 AAAAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.53
Consensus pattern (19 bp):
AATTAATCCTTATATTATT
Found at i:32391546 original size:17 final size:18
Alignment explanation
Indices: 32391526--32391560 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
32391516 ATAACTGTAA
*
32391526 TATAGAAGTTT-CAAAAG
1 TATAAAAGTTTACAAAAG
32391543 TATAAAAGTTTACAAAAG
1 TATAAAAGTTTACAAAAG
32391561 CCTAGATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (18 bp):
TATAAAAGTTTACAAAAG
Found at i:32396707 original size:40 final size:40
Alignment explanation
Indices: 32396652--32396740 Score: 160
Period size: 40 Copynumber: 2.2 Consensus size: 40
32396642 GGCTAAGTAT
*
32396652 TTGTGCGAGTTACCAAATCCGGGTTAATTCCCGAAGGCAA
1 TTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCAA
*
32396692 TTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCAT
1 TTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCAA
32396732 TTGTGCGAG
1 TTGTGCGAG
32396741 CTATTATAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCAA
Found at i:32396754 original size:40 final size:40
Alignment explanation
Indices: 32396650--32396780 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
32396640 CGGGCTAAGT
* *
32396650 ATTTGTGCGAGTTACCAAATCCGGGTTAATTCCCGAAGGC
1 ATTTGTGCGAGCTACCAAATCCGGGTTAAGTCCCGAAGGC
* *
32396690 AATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGC
1 ATTTGTGCGAGCTACCAAATCCGGGTTAAGTCCCGAAGGC
** * *
32396730 ATTTGTGCGAGCTATTATAA-CCGGGCTATGTCCCGAAGGC
1 ATTTGTGCGAGCTACCA-AATCCGGGTTAAGTCCCGAAGGC
* *
32396770 TTTTGAGCGAG
1 ATTTGTGCGAG
32396781 TCGCCATATC
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 78 0.98
41 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATTTGTGCGAGCTACCAAATCCGGGTTAAGTCCCGAAGGC
Found at i:32405603 original size:48 final size:47
Alignment explanation
Indices: 32405548--32405866 Score: 200
Period size: 48 Copynumber: 6.7 Consensus size: 47
32405538 GGTAATTTAT
* * * *
32405548 CGATGCCATGTTCCAAACATGGTCTTACACTGGTTTACATGTCGAGGC
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGTCT-CATCTCAAGGC
* * * *
32405596 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAATGC
1 CGATGCCATGTTCCAGACATGGTCTTACACT-GGTCTCATCTCAAGGC
* * * **
32405644 TGATGTCATGTTCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTTCCAGACATGGTCTTACACTGG-TCTCAT-CTCAAGGC
* * * * *
32405692 CAATGCCATG-TCCTAGACATGGTTTTACATTAGCGT-ACA-CATCAATGC
1 CGATGCCATGTTCC-AGACATGGTCTTACACT-G-GTCTCATC-TCAAGGC
* * * *
32405740 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTAT-TACATTGG-
1 CGATGCCATGTTCCAGACATGGTCTTACACTGG-TCTCATCT-CA-AGGC
* * * * **
32405788 CGATGCCATGCTCCAAACGTGGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTTCCAGACATGGTCTTACACTGG-TCTCATCTCAAGGC
* * * *
32405836 CAATGCCATGTACTAGACATGGTCTTTCACT
1 CGATGCCATGTTCCAGACATGGTCTTACACT
32405867 AGCACACATA
Statistics
Matches: 206, Mismatches: 49, Indels: 32
0.72 0.17 0.11
Matches are distributed among these distances:
46 1 0.00
47 11 0.05
48 183 0.89
49 10 0.05
50 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (47 bp):
CGATGCCATGTTCCAGACATGGTCTTACACTGGTCTCATCTCAAGGC
Found at i:32405720 original size:96 final size:93
Alignment explanation
Indices: 32405549--32405827 Score: 305
Period size: 96 Copynumber: 2.9 Consensus size: 93
32405539 GTAATTTATC
* * * *
32405549 GATGCCATGTTCCAAACATGGTCTTACACTGG-TTTACAT-GTCGAGGCCGATGCCATGTCCCAG
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCCATGT-CCAG
32405612 ACATGGTCTTACACTAGCTCTCATCTTAATGCT
63 ACATGGTCTTACACTAGCTCTCATC--AATGCT
* *
32405645 GATGTCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCTAGAC
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCC-AGAC
* * *
32405710 ATGGTTTTACATTAGCGTACACATCAATGCT
65 ATGGTCTTACACTAGC-T-CTCATCAATGCT
* * *
32405741 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATTACAT-TGG-CGATGCCATGCTCCAA
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCA-TA-ATGTGGCCGATGCCATG-TCCAG
* *
32405804 ACGTGGTCTTACACTGGCTCTCAT
63 ACATGGTCTTACACTAGCTCTCAT
32405828 ATCGTGGCCA
Statistics
Matches: 156, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
94 4 0.03
95 3 0.02
96 130 0.83
97 12 0.08
98 7 0.04
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (93 bp):
GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCAGACA
TGGTCTTACACTAGCTCTCATCAATGCT
Found at i:32405811 original size:144 final size:143
Alignment explanation
Indices: 32405597--32405858 Score: 395
Period size: 144 Copynumber: 1.8 Consensus size: 143
32405587 TGTCGAGGCC
* * * *
32405597 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAATGCTGATGTCATGTTCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ATATTAATGCTGATGCCATGCTCCAAAC
*
32405662 ATGGTCTTACACTGGCTCTCATAAT-GTGGCCAATGCCATGTCCTAGACATGGTTTTACATTAGC
65 ATGGTCTTACACTGGCTCTCAT-ATCGTGGCCAATGCCATGTACTAGACATGGTTTTACATTAGC
32405726 GTACACATCAATGCT
129 GTACACATCAATGCT
*
32405741 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-TATTACATTGGC-GATGCCATGCTCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTATATTA-A-T-GCTGATGCCATGCTCCAA
*
32405804 ACGTGGTCTTACACTGGCTCTCATATCGTGGCCAATGCCATGTACTAGACATGGT
63 ACATGGTCTTACACTGGCTCTCATATCGTGGCCAATGCCATGTACTAGACATGGT
32405859 CTTTCACTAG
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
142 4 0.04
143 3 0.03
144 98 0.92
145 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (143 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTATATTAATGCTGATGCCATGCTCCAAACA
TGGTCTTACACTGGCTCTCATATCGTGGCCAATGCCATGTACTAGACATGGTTTTACATTAGCGT
ACACATCAATGCT
Found at i:32408013 original size:68 final size:68
Alignment explanation
Indices: 32407899--32408034 Score: 209
Period size: 68 Copynumber: 2.0 Consensus size: 68
32407889 GTAGCATTAG
** ** *
32407899 TTGAAAGTGAAAGAATTTGATATGCCTAAGACTGCCTTTAATACCCATTACGGACATTATGAGTT
1 TTGAAAGTGAAAGAATCCGATATGCCTAAGACCACCTTTAAGACCCATTACGGACATTATGAGTT
32407964 CTT
66 CTT
* *
32407967 TTGAAAGTGAAAGAATCCGATATGCCTAAGACCATCTTTAAGACCCATTATGGACATTATGAGTT
1 TTGAAAGTGAAAGAATCCGATATGCCTAAGACCACCTTTAAGACCCATTACGGACATTATGAGTT
32408032 CTT
66 CTT
32408035 ATTTATGCTT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 61 1.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (68 bp):
TTGAAAGTGAAAGAATCCGATATGCCTAAGACCACCTTTAAGACCCATTACGGACATTATGAGTT
CTT
Found at i:32411095 original size:40 final size:40
Alignment explanation
Indices: 32411018--32411123 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 40
32411008 GATGTACGGG
* *
32411018 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGA
1 CTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAATCCGGA
* *
32411058 CTAAGGT-CCGAAGGCATTTGTGCGAGTTACCAAATCCGGG
1 CTAA-GTCCCGAAGGCATTTGTGCGAGTGACCAAATCCGGA
* *
32411098 TTAAGTCCCGAAGGCATTCGTGCGAG
1 CTAAGTCCCGAAGGCATTTGTGCGAG
32411124 CTATTATAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
39 2 0.04
40 46 0.81
41 9 0.16
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAATCCGGA
Found at i:32411137 original size:40 final size:40
Alignment explanation
Indices: 32411014--32411152 Score: 115
Period size: 40 Copynumber: 3.5 Consensus size: 40
32411004 GAATGATGTA
* * *
32411014 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGC-GAGCT-ACCAAATC
* * *
32411054 CGGACTAAGGT-CCGAAGGCATTTGTGCGAGTTACCAAATC
1 CGGGCTAA-GTCCCGAAGGCATTCGTGCGAGCTACCAAATC
* **
32411094 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGCTATTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACCA-AATC
* *
32411134 CGGGCTATGTCCCAAAGGC
1 CGGGCTAAGTCCCGAAGGC
32411153 TTTTGAGCAC
Statistics
Matches: 82, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
39 2 0.02
40 68 0.83
41 12 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACCAAATC
Found at i:32412925 original size:40 final size:40
Alignment explanation
Indices: 32412881--32412990 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
32412871 TTCACAATTT
* *
32412881 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
32412921 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * * *
32412961 GCATAAATGTCTTCAGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
32412991 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:32422976 original size:30 final size:30
Alignment explanation
Indices: 32422927--32422983 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
32422917 GTTTGTGAAC
* *
32422927 ATTAAACAAACGAACATGAATACAAATAAA
1 ATTAAACAAACAAACATGAATAAAAATAAA
* *
32422957 ATTAAATAAACAAATATGAATAAAAAT
1 ATTAAACAAACAAACATGAATAAAAAT
32422984 TTGAAATTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.21
Consensus pattern (30 bp):
ATTAAACAAACAAACATGAATAAAAATAAA
Found at i:32424325 original size:47 final size:46
Alignment explanation
Indices: 32424251--32424518 Score: 180
Period size: 47 Copynumber: 5.7 Consensus size: 46
32424241 ATTTGTTTGT
* *
32424251 GAGCTAGTGTAAGACATGTCTGGGACATGCATCCGGCATATTATG-AA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCCAGCAT-TGA-GAAA
32424298 -AGCTAGTGTAAGACCATGTCTGGGACATGGCAT-CAGCATTGAGACAA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCCAGCATTGAGA-AA
* * * *
32424345 GAGCTAGTGTAAGACATG-CTTGGGACATGCAT-CGGCCTCGAGACTTA
1 GAGCTAGTGTAAGACATGTC-TGGGACATGCATCCAGCATTGAGA--AA
* * * *
32424392 -AGCCAGTGTAAGACATGTCTGGGAAATGCAT-CAGC-TACGAGATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCCAGCAT-TGAGA-AA
* * *
32424437 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TTGAGATAT
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCCAGCATTGAGA-AA
* *
32424484 GAGCCAGTGTAAGACCATGCCTGGGACATGGCATC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
32424519 GGCACCTTAC
Statistics
Matches: 186, Mismatches: 20, Indels: 30
0.79 0.08 0.13
Matches are distributed among these distances:
45 4 0.02
46 74 0.40
47 84 0.45
48 23 0.12
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCCAGCATTGAGAAA
Found at i:32424519 original size:47 final size:48
Alignment explanation
Indices: 32424302--32424519 Score: 224
Period size: 47 Copynumber: 4.6 Consensus size: 48
32424292 TATGAAAGCT
* * * *
32424302 AGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAGACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAGC-TCGAGATATGAGCC
*
32424350 AGTGTAAGA-CATG-CTTGGGACAT-GCATCG-GCCTCGAGACT-TAAGCC
1 AGTGTAAGACCATGTC-TGGGACATGGCATCGAG-CTCGAGA-TATGAGCC
* *
32424396 AGTGTAAGA-CATGTCTGGGAAAT-GCATC-AGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAGCT-CGAGAT-ATGAGCC
*
32424442 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAGCTCGAGATATGAGCC
*
32424489 AGTGTAAGACCATGCCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
32424520 GCACCTTACC
Statistics
Matches: 146, Mismatches: 11, Indels: 27
0.79 0.06 0.15
Matches are distributed among these distances:
45 3 0.02
46 60 0.41
47 66 0.45
48 16 0.11
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGAGCTCGAGATATGAGCC
Found at i:32440045 original size:31 final size:30
Alignment explanation
Indices: 32439989--32440047 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
32439979 AAAAATCTAA
32439989 TGACTTAAATAAAAATTTATGAATAGTTAAG
1 TGACTTAAATAAAAATTTA-GAATAGTTAAG
*
32440020 TGACTTAAATGAAAACTTTCA-AATAGTT
1 TGACTTAAAT-AAAAATTT-AGAATAGTT
32440048 TAATGACCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
31 17 0.68
32 7 0.28
33 1 0.04
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.36
Consensus pattern (30 bp):
TGACTTAAATAAAAATTTAGAATAGTTAAG
Found at i:32443861 original size:10 final size:10
Alignment explanation
Indices: 32443843--32443877 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
32443833 CTAAATTCCA
32443843 AAAGATAAAT
1 AAAGATAAAT
*
32443853 AAGGATAAAT
1 AAAGATAAAT
32443863 AAAGATAAAT
1 AAAGATAAAT
32443873 AAAGA
1 AAAGA
32443878 AAAAAGCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:32473801 original size:2 final size:2
Alignment explanation
Indices: 32473794--32473834 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
32473784 ATCCTTTGAA
32473794 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32473835 AGCAGGTTCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32473917 original size:45 final size:45
Alignment explanation
Indices: 32473858--32474152 Score: 354
Period size: 45 Copynumber: 6.7 Consensus size: 45
32473848 AGATCAAGAC
* *
32473858 AGTACGACCATAGCTGAAAGTCGCTATGGCATCATTATTCAGATG
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGATG
*
32473903 AGTAAGATCATAGCTGAAAGA--C----GCATCATTATTCAGATG
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGATG
* * * *
32473942 AGTAAGACCATAGTTGAAAGACGCTATGGGATCATTATTCAAACG
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGATG
* * *
32473987 AGTAAGATCATAGCTGAAAGACGTTATGGCATCATTATTCAGACG
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGATG
* * *
32474032 AGTAAGACCCTAGCTGAAAGCCGCTATGGCATCATTATTCAGA-C
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGATG
* * * *
32474076 AATAAGACCATAGCTGAAA-ACACTATAGCATCATGATTCAGATG
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGATG
* **
32474120 AGTAAGACCATAGTTGAAAGACATTATGGCATC
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATC
32474153 TAATCGAAAA
Statistics
Matches: 213, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
39 36 0.17
41 1 0.00
43 20 0.09
44 34 0.16
45 122 0.57
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (45 bp):
AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGATG
Found at i:32474004 original size:84 final size:85
Alignment explanation
Indices: 32473858--32474152 Score: 351
Period size: 84 Copynumber: 3.4 Consensus size: 85
32473848 AGATCAAGAC
* * *
32473858 AGTACGACCATAGCTGAAAGTCGCTATGGCATCATTATTCAGATGAGTAAGATCATAGCTGAAAG
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGACGAGTAAGATCATAGCTGAAAG
32473923 AC-GCATCATTATTCAGATG
66 ACTGCATCATTATTCAGATG
* * *
32473942 AGTAAGACCATAGTTGAAAGACGCTATGGGATCATTATTCAAACGAGTAAGATCATAGCTGAAAG
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGACGAGTAAGATCATAGCTGAAAG
*
32474007 ACGTTATGGCATCATTATTCAGACG
66 AC----T-GCATCATTATTCAGATG
* * * *
32474032 AGTAAGACCCTAGCTGAAAGCCGCTATGGCATCATTATTCAGAC-AATAAGACCATAGCTGAAAA
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGACGAGTAAGATCATAGCTG-AAA
* *
32474096 CACTATAGCATCATGATTCAGATG
65 GAC--T-GCATCATTATTCAGATG
* **
32474120 AGTAAGACCATAGTTGAAAGACATTATGGCATC
1 AGTAAGACCATAGCTGAAAGACGCTATGGCATC
32474153 TAATCGAAAA
Statistics
Matches: 181, Mismatches: 23, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
84 61 0.34
88 46 0.25
89 14 0.08
90 60 0.33
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (85 bp):
AGTAAGACCATAGCTGAAAGACGCTATGGCATCATTATTCAGACGAGTAAGATCATAGCTGAAAG
ACTGCATCATTATTCAGATG
Found at i:32474195 original size:178 final size:171
Alignment explanation
Indices: 32473854--32474199 Score: 410
Period size: 178 Copynumber: 2.0 Consensus size: 171
32473844 ATCAAGATCA
* * * * *
32473854 AGACAGTACGACCATAGCTGAAAGTCGCTATGGCATCATTATTCAGATGAGTAAGATCATAGCTG
1 AGACAGTAAGACCATAGCTGAAAGCCGCTATGGCATCATTATTCAGATCAATAAGACCATAGCTG
* * * * *
32473919 AAAGACGCATCATTATTCAGATGAGTAAGACCATAGTTGAAAGACGCTATGGGATCATTATTCAA
66 AAACACGCATCATGATTCAGATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA-TAATCAA
* * *
32473984 ACGAGTAAGATCATAGCTGAAAGACGTTATGGCATCATTATTC
130 ACGAATAAGACCATAACTGAAAGACG-TATGGCATCATTATTC
*
32474027 AGACGAGTAAGACCCTAGCTGAAAGCCGCTATGGCATCATTATTCAGA-CAATAAGACCATAGCT
1 AGAC-AGTAAGACCATAGCTGAAAGCCGCTATGGCATCATTATTCAGATCAATAAGACCATAGCT
*
32474091 GAAAACACTATAGCATCATGATTCAGATGAGTAAGACCATAGTTGAAAGACATTATGGCATC-TA
65 G-AAACAC----GCATCATGATTCAGATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATA
* *
32474155 ATCGAAAATGAATAAGACCATAATTGAAAGGAAC-TATGGCATCAT
125 ATC--AAACGAATAAGACCATAACTGAAA-G-ACGTATGGCATCAT
32474200 ATTGGAAAGT
Statistics
Matches: 146, Mismatches: 17, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
173 18 0.12
174 45 0.31
176 4 0.03
178 76 0.52
179 1 0.01
180 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.24
Consensus pattern (171 bp):
AGACAGTAAGACCATAGCTGAAAGCCGCTATGGCATCATTATTCAGATCAATAAGACCATAGCTG
AAACACGCATCATGATTCAGATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATAATCAAA
CGAATAAGACCATAACTGAAAGACGTATGGCATCATTATTC
Found at i:32474237 original size:46 final size:46
Alignment explanation
Indices: 32474076--32474318 Score: 203
Period size: 46 Copynumber: 5.4 Consensus size: 46
32474066 TTATTCAGAC
* * * * *
32474076 AATAAGACCATAGCTGAAA-ACACTATAGCATCATGATTC-AGA-TG
1 AATAAGACCATGGTTAAAAGACACTATGGCATCAT-ATTCGAAAGTG
* * * * * *
32474120 AGTAAGACCATAGTTGAAAGACATTATGGCATC-TAATCGAAAATG
1 AATAAGACCATGGTTAAAAGACACTATGGCATCATATTCGAAAGTG
** * *
32474165 AATAAGACCATAATTGAAAGGA-ACTATGGCATCATATTGGAAAGTG
1 AATAAGACCATGGTT-AAAAGACACTATGGCATCATATTCGAAAGTG
*
32474211 AATAAGACCATGGTTAAAAGACACTATGGCATCATATTAGAAAGTG
1 AATAAGACCATGGTTAAAAGACACTATGGCATCATATTCGAAAGTG
* * * * * * *
32474257 AATAAGACAATGATTGAAAGACATTATGGCATTA-AGTCGAGAA-TA
1 AATAAGACCATGGTTAAAAGACACTATGGCATCATATTCGA-AAGTG
32474302 AATAAGACCATGGTTAA
1 AATAAGACCATGGTTAA
32474319 GAGAAACCAT
Statistics
Matches: 163, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
43 3 0.02
44 20 0.12
45 60 0.37
46 80 0.49
ACGTcount: A:0.44, C:0.13, G:0.19, T:0.24
Consensus pattern (46 bp):
AATAAGACCATGGTTAAAAGACACTATGGCATCATATTCGAAAGTG
Found at i:32474239 original size:91 final size:91
Alignment explanation
Indices: 32474122--32474318 Score: 229
Period size: 91 Copynumber: 2.2 Consensus size: 91
32474112 TTCAGATGAG
* * * * *
32474122 TAAGACCATAGTTGAAAGACATTATGGCATC-TAATCGAAAATGAATAAGACCATAATTGAAAGG
1 TAAGACCATGGTTAAAAGACACTATGGCATCATAATAGAAAATGAATAAGACAATAATTGAAA-G
* * *
32474186 A-ACTATGGCATCATATTGGA-AAGTGAA
65 ACACTATGGCATCA-AGTCGAGAA-TAAA
* * *
32474213 TAAGACCATGGTTAAAAGACACTATGGCATCATATTAGAAAGTGAATAAGACAATGATTGAAAGA
1 TAAGACCATGGTTAAAAGACACTATGGCATCATAATAGAAAATGAATAAGACAATAATTGAAAGA
* *
32474278 CATTATGGCATTAAGTCGAGAATAAA
66 CACTATGGCATCAAGTCGAGAATAAA
32474304 TAAGACCATGGTTAA
1 TAAGACCATGGTTAA
32474319 GAGAAACCAT
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
91 52 0.58
92 38 0.42
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.24
Consensus pattern (91 bp):
TAAGACCATGGTTAAAAGACACTATGGCATCATAATAGAAAATGAATAAGACAATAATTGAAAGA
CACTATGGCATCAAGTCGAGAATAAA
Found at i:32478926 original size:20 final size:20
Alignment explanation
Indices: 32478903--32478956 Score: 51
Period size: 20 Copynumber: 2.7 Consensus size: 20
32478893 GCTCTTGAGT
32478903 GCACATTCATGCTCCT-ATTA
1 GCACATTCATGCTCCTGA-TA
32478923 GCAC-TGT-AGTGCTCCTGATA
1 GCACAT-TCA-TGCTCCTGATA
*
32478943 GCACATTCGTGCTC
1 GCACATTCATGCTC
32478957 ATGTCAGCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 10
0.72 0.03 0.26
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.20, C:0.30, G:0.19, T:0.31
Consensus pattern (20 bp):
GCACATTCATGCTCCTGATA
Found at i:32482921 original size:40 final size:39
Alignment explanation
Indices: 32482835--32482963 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 39
32482825 TGCTGGAAAT
* * * *
32482835 TATATCCGGGTTAAGACCCGAAGGCAATTGTTCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
32482875 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* * *
32482915 TCTATCCGGACTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
32482955 TATATCCGG
1 TATATCCGG
32482964 TTATATTCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
39 4 0.05
40 70 0.92
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:32491597 original size:13 final size:13
Alignment explanation
Indices: 32491579--32491603 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32491569 TTTAACAAAC
32491579 CAACCACCACCTT
1 CAACCACCACCTT
32491592 CAACCACCACCT
1 CAACCACCACCT
32491604 AAAACTCCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.56, G:0.00, T:0.12
Consensus pattern (13 bp):
CAACCACCACCTT
Found at i:32491773 original size:13 final size:13
Alignment explanation
Indices: 32491755--32491779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32491745 TAATTTATAT
32491755 GTGTGAAAGTTTC
1 GTGTGAAAGTTTC
32491768 GTGTGAAAGTTT
1 GTGTGAAAGTTT
32491780 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.32, T:0.40
Consensus pattern (13 bp):
GTGTGAAAGTTTC
Found at i:32493778 original size:20 final size:19
Alignment explanation
Indices: 32493742--32493792 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
32493732 AAGCATTATT
*
32493742 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
32493761 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
32493781 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
32493793 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:32494511 original size:46 final size:46
Alignment explanation
Indices: 32494444--32494618 Score: 172
Period size: 49 Copynumber: 3.7 Consensus size: 46
32494434 TATGTGTGCT
* *
32494444 AGTGTAAGACATGTCTGGGACATGCGTCGGCC-ACATTTTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACA-TATGAGAGCC
* * *
32494490 AGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGATATGCGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-T-ACATATGAGAGCC
* * * * *
32494538 AGTGTAAGACCTGTCTGGGACATGGTATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-CT-ACATATGAGAGCC
* *
32494587 AGTGTAAGACCTGTCTCGGACATGGCATCGGC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGC
32494619 TTTGATATAT
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
46 30 0.28
48 29 0.27
49 49 0.45
50 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTACATATGAGAGCC
Found at i:32494625 original size:49 final size:49
Alignment explanation
Indices: 32494482--32494646 Score: 199
Period size: 49 Copynumber: 3.4 Consensus size: 49
32494472 GGCCACATTT
* * *
32494482 TGAGAGCCAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTTGAGATA
1 TGAGAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGGCATTGATATA
* * * * * *
32494530 TGCGAGCCAGTGTAAGACCTGTCTGGGACATGGTATCGACACTGATAGA
1 TGAGAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGGCATTGATATA
* *
32494579 TGAGAGCCAGTGTAAGACCTGTCTCGGACATGGCATCGGCTTTGATATA
1 TGAGAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGGCATTGATATA
*
32494628 TG-GAAGTCAGTGTAAGACC
1 TGAG-AGCCAGTGTAAGACC
32494647 ATGTTTGGAA
Statistics
Matches: 98, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
48 29 0.30
49 69 0.70
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
TGAGAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGGCATTGATATA
Found at i:32495532 original size:15 final size:16
Alignment explanation
Indices: 32495501--32495533 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
32495491 CATTCGAGGC
*
32495501 CTCACGAGCGTGCGAA
1 CTCACGAGCGGGCGAA
32495517 CTCACGAG-GGGCGAA
1 CTCACGAGCGGGCGAA
32495532 CT
1 CT
32495534 GAGCCCACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.24, C:0.30, G:0.33, T:0.12
Consensus pattern (16 bp):
CTCACGAGCGGGCGAA
Found at i:32497764 original size:48 final size:48
Alignment explanation
Indices: 32497712--32497820 Score: 209
Period size: 48 Copynumber: 2.3 Consensus size: 48
32497702 ATTAAGGACT
32497712 CCATGTAAGACCACATCAAGATGTGACATTGGCACTAAGACAAGGATA
1 CCATGTAAGACCACATCAAGATGTGACATTGGCACTAAGACAAGGATA
32497760 CCATGTAAGACCACATCAAGATGTGACATTGGCACTAAGACAAGGATA
1 CCATGTAAGACCACATCAAGATGTGACATTGGCACTAAGACAAGGATA
*
32497808 CCACGTAAGACCA
1 CCATGTAAGACCA
32497821 TGTTTGGAAC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.17
Consensus pattern (48 bp):
CCATGTAAGACCACATCAAGATGTGACATTGGCACTAAGACAAGGATA
Found at i:32497972 original size:55 final size:53
Alignment explanation
Indices: 32497851--32498044 Score: 183
Period size: 54 Copynumber: 3.6 Consensus size: 53
32497841 GTAAGATAAG
* * * * **
32497851 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC-TATAAGGTAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATA-AAGCAAA
* * * *
32497904 GAAAATCATGTAAGATCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAA
1 G-ATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAAGCAAA
* * * * * * *
32497960 GGTCCCGTGTAAGACCATGCCAAGGCATGCCATTGGTGAGTTCATAAAGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAAGCAAA
*
32498013 GATACCACGTAAGACCATGTCAAGACATGGCA
1 GATACCATGTAAGACCATGTCAAGACATGGCA
32498045 ATGGTAAGTT
Statistics
Matches: 111, Mismatches: 26, Indels: 8
0.77 0.18 0.06
Matches are distributed among these distances:
53 35 0.32
54 37 0.33
55 32 0.29
56 5 0.05
57 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAAGCAAA
Found at i:32498028 original size:53 final size:53
Alignment explanation
Indices: 32497851--32498061 Score: 181
Period size: 53 Copynumber: 3.9 Consensus size: 53
32497841 GTAAGATAAG
* * **
32497851 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC-TATAAGGTAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATA-AAGCAAA
* * * * * *
32497904 GAAAATCATGTAAGATCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAA
1 G-ATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-C-ATAAAGCAAA
* * * * * * *
32497960 GGTCCCGTGTAAGACCATGCCAAGGCATGCCATTGGTGAGTTCATAAAGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAAGCAAA
* * * * *
32498013 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAAG
32498062 GAAAAGGTTC
Statistics
Matches: 125, Mismatches: 29, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
53 49 0.39
54 37 0.30
55 32 0.26
56 5 0.04
57 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAAGCAAA
Found at i:32501389 original size:39 final size:40
Alignment explanation
Indices: 32501268--32501389 Score: 185
Period size: 40 Copynumber: 3.1 Consensus size: 40
32501258 CTAAGATCCG
*
32501268 AGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGA
1 AGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGA
*
32501308 AGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGA
1 AGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGA
* *
32501348 AGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATCCCGA
1 AGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGA
32501387 AGG
1 AGG
32501390 TACTTGGGTT
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
39 15 0.20
40 60 0.79
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
AGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGA
Found at i:32509195 original size:40 final size:39
Alignment explanation
Indices: 32509150--32509272 Score: 158
Period size: 40 Copynumber: 3.1 Consensus size: 39
32509140 CTAAGATCCA
*
32509150 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATATCC-GGCTAAGTCCCG
* *
32509190 AAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCTCG
1 AAGGCATTTGTGCGAGTGACTATATCC-GGCTAAGTCCCG
* * *
32509230 AAGGCATTTGTGCGAGTTG-TTATATCCGGCTAAATCCTG
1 AAGGCATTTGTGCGAG-TGACTATATCCGGCTAAGTCCCG
32509269 AAGG
1 AAGG
32509273 TACTTGGGTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
39 13 0.18
40 59 0.81
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
AAGGCATTTGTGCGAGTGACTATATCCGGCTAAGTCCCG
Found at i:32512770 original size:25 final size:25
Alignment explanation
Indices: 32512726--32512795 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
32512716 CTCTTTTAAT
* * * *
32512726 AACTAGGGCAAAGTCTTTTTTGATA
1 AACTGGGGCAAAGACCTTTTCGATA
* *
32512751 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGACCTTTTCGATA
* *
32512776 AACTGAGGCATAGACCTTTT
1 AACTGGGGCAAAGACCTTTT
32512796 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (25 bp):
AACTGGGGCAAAGACCTTTTCGATA
Found at i:32512852 original size:10 final size:10
Alignment explanation
Indices: 32512840--32512878 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
32512830 ATATGTGAAT
*
32512840 ATATCATGGT
1 ATATCATGGC
32512850 ATATCATGTGC
1 ATATCATG-GC
32512861 ATATCATGGC
1 ATATCATGGC
32512871 ATATCATG
1 ATATCATG
32512879 TACAAAAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (10 bp):
ATATCATGGC
Found at i:32512866 original size:21 final size:21
Alignment explanation
Indices: 32512840--32512879 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32512830 ATATGTGAAT
*
32512840 ATATCATGGTATATCATGTGC
1 ATATCATGGCATATCATGTGC
32512861 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
32512880 ACAAAAGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:32537740 original size:93 final size:93
Alignment explanation
Indices: 32537591--32537760 Score: 227
Period size: 93 Copynumber: 1.8 Consensus size: 93
32537581 TATAAGAGCT
* * *
32537591 AGTGTAAGACATGTCTAGGATATGCATCGGCCTCGAGATATGCAAGCCAGTGTAAGACC-TGTCT
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGAAATGCAAGCCAGTGTAAGACCATGTCT
*
32537655 GGGACATGGCATATGCTTGACATGTGTC
66 GGAACATGGCATATGCTTGACATGTGTC
* * * *
32537683 AGTGTAAGACTTGTCTGGGACATGGCATCAGCCTCGATAAATAG-AAGTCAGTGTAAGACCATGT
1 AGTGTAAGACATGTCTAGGACAT-GCATCAGCCTCGAGAAAT-GCAAGCCAGTGTAAGACCATGT
*
32537747 TTGGAACATGGCAT
64 CTGGAACATGGCAT
32537761 CAGCATCATA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 20 0.30
93 30 0.45
94 16 0.24
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGAAATGCAAGCCAGTGTAAGACCATGTCT
GGAACATGGCATATGCTTGACATGTGTC
Found at i:32541328 original size:27 final size:26
Alignment explanation
Indices: 32541298--32541348 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
32541288 CCCTAATTGA
*
32541298 TAAAATGACTGTTTTGCCCCTATGTTG
1 TAAAATGACTGTTTT-ACCCTATGTTG
**
32541325 TAAAATGTTTGTTTTACCCTATGT
1 TAAAATGACTGTTTTACCCTATGT
32541349 GATGTATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45
Consensus pattern (26 bp):
TAAAATGACTGTTTTACCCTATGTTG
Found at i:32543757 original size:40 final size:39
Alignment explanation
Indices: 32543691--32543841 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
32543681 AAATTGAATG
* * *
32543691 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
32543730 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
32543770 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
32543810 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
32543842 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:32543855 original size:40 final size:39
Alignment explanation
Indices: 32543728--32543857 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
32543718 ATGCTGGAAA
* *
32543728 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
32543768 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
32543808 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
32543848 TTATATCCGG
1 TTATATCCGG
32543858 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:32550045 original size:21 final size:20
Alignment explanation
Indices: 32550006--32550045 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
32549996 CAAAACTTGT
*
32550006 ATAACTATCATTAAACATTC
1 ATAACTATCATCAAACATTC
*
32550026 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
32550046 AAAATACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:32550976 original size:50 final size:50
Alignment explanation
Indices: 32550922--32551061 Score: 217
Period size: 50 Copynumber: 2.8 Consensus size: 50
32550912 ACTGGTCACT
* *
32550922 AAGGCTTCCCAAATAATAAGTTACATAGGCTTTTCAGATAACAAGCCACA
1 AAGGCTTCCCAAATAATAAGCTACATAGGCTTTTTAGATAACAAGCCACA
* *
32550972 AAGGCTTCCCAAATAATACGCTACATAGGCTTTTTAGATAACTAGCCACA
1 AAGGCTTCCCAAATAATAAGCTACATAGGCTTTTTAGATAACAAGCCACA
* * *
32551022 AAGGCTTTCCAAATAATATGCCACATAGGCTTTTTAGATA
1 AAGGCTTCCCAAATAATAAGCTACATAGGCTTTTTAGATA
32551062 GCTACAAAGG
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 83 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.27
Consensus pattern (50 bp):
AAGGCTTCCCAAATAATAAGCTACATAGGCTTTTTAGATAACAAGCCACA
Found at i:32551054 original size:25 final size:25
Alignment explanation
Indices: 32550923--32551054 Score: 113
Period size: 25 Copynumber: 5.3 Consensus size: 25
32550913 CTGGTCACTA
* **
32550923 AGGCTTCCCAAATAATAAGTTACAT
1 AGGCTTTCCAAATAATAAGCCACAT
* * * *
32550948 AGGCTTTTCAGATAACAAGCCACAA
1 AGGCTTTCCAAATAATAAGCCACAT
* * *
32550973 AGGCTTCCCAAATAATACGCTACAT
1 AGGCTTTCCAAATAATAAGCCACAT
** * *
32550998 AGGCTTTTTAGATAACT-AGCCACAA
1 AGGCTTTCCAAATAA-TAAGCCACAT
*
32551023 AGGCTTTCCAAATAATATGCCACAT
1 AGGCTTTCCAAATAATAAGCCACAT
32551048 AGGCTTT
1 AGGCTTT
32551055 TTAGATAGCT
Statistics
Matches: 79, Mismatches: 26, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
24 1 0.01
25 77 0.97
26 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (25 bp):
AGGCTTTCCAAATAATAAGCCACAT
Found at i:32554160 original size:336 final size:335
Alignment explanation
Indices: 32553517--32554190 Score: 1231
Period size: 336 Copynumber: 2.0 Consensus size: 335
32553507 GTCTTCAGAA
*
32553517 TTTTGAGAGTAAAGGGGTAAAAGATGACACAAAAGGAGTGTGGGGTAGTGGCAAGGTGGCGCCAC
1 TTTTGAGAGTAAAGGGGTAAAAGATGACACAAAAGGAGTCTGGGGTAGTGGCAAGGTGGCGCCAC
*
32553582 TTAGGAGGCAAGGAAGTGACGCCATAGAGGAAGCAAGGGGTCTAAGGTTCAAGTCTTGGCTCTTG
66 TTAGGAGGCAAGGAAGTGACGCCATAGAGGAAGCAAGGGGTCCAAGGTTCAAGTCTTGGCTCTTG
* * *
32553647 CAATATATTTTGGTTTTTCTTTTTAATAAATCTGGAAGCAAGTAGGTGCGCTTTAAAGTTTAATG
131 CAATATATTTTGGTTTTTCTTTTCAATAAATCTGAAAGCAAGTAGGTGCGCTTTAAAGTTTAATA
32553712 TGTTGGATTTATGACACAAATGAGTTGATGGCCTAGTGGTGGTGGCTTGAGTTGGCATGTGAGAG
196 TGTTGGATTTATGACACAAATGAGTTGATGGCCTAGTGGTGGTGGCTTGAGTTGGCATGTGAGAG
* *
32553777 GGCTTTGGTTCGAATCCTTTGGCACGCAAAGGTTGATTATTTTGCTATGTTGGGATGGCAAGAGT
261 GGCTTTAGTTCGAATCCCTTGGCACGCAAAGGTTGATTATTTTGCTATGTTGGGATGGCAAGAGT
32553842 TGGTGTTGGT
326 TGGTGTTGGT
* *
32553852 TTTTGAGAGTAAAGTGGTAAAAGATGACACAAAAAGGAGTCTGGTGTAGTGGCAAGGTGGCGCCA
1 TTTTGAGAGTAAAGGGGTAAAAGATGACAC-AAAAGGAGTCTGGGGTAGTGGCAAGGTGGCGCCA
*
32553917 CTTAGGGGGCAAGGAAGTGACGCCATAGAGGAAGCAAGGGGTCCAAGGTTCAAGTCTTGGCTCTT
65 CTTAGGAGGCAAGGAAGTGACGCCATAGAGGAAGCAAGGGGTCCAAGGTTCAAGTCTTGGCTCTT
32553982 GCAATATATTTTGGTTTTTCTTTTCAATAAATCTGAAAGCAAGTAGGTGCGCTTTAAAGTTTAAT
130 GCAATATATTTTGGTTTTTCTTTTCAATAAATCTGAAAGCAAGTAGGTGCGCTTTAAAGTTTAAT
* *
32554047 ATGTTGGATTTATGACACAAATGAGTTGATGGTCTAGTGGTGGTGGCTTGAGTTGGTATGTGAGA
195 ATGTTGGATTTATGACACAAATGAGTTGATGGCCTAGTGGTGGTGGCTTGAGTTGGCATGTGAGA
32554112 GGGCTTTAGTTCGAATCCCTTGGCACGCAAAGGTTGATTATTTTGCTATGTTGGGATGGCAAGAG
260 GGGCTTTAGTTCGAATCCCTTGGCACGCAAAGGTTGATTATTTTGCTATGTTGGGATGGCAAGAG
32554177 TTGGTGTTGGT
325 TTGGTGTTGGT
32554188 TTT
1 TTT
32554191 AAACTCTGGT
Statistics
Matches: 326, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
335 29 0.09
336 297 0.91
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.31
Consensus pattern (335 bp):
TTTTGAGAGTAAAGGGGTAAAAGATGACACAAAAGGAGTCTGGGGTAGTGGCAAGGTGGCGCCAC
TTAGGAGGCAAGGAAGTGACGCCATAGAGGAAGCAAGGGGTCCAAGGTTCAAGTCTTGGCTCTTG
CAATATATTTTGGTTTTTCTTTTCAATAAATCTGAAAGCAAGTAGGTGCGCTTTAAAGTTTAATA
TGTTGGATTTATGACACAAATGAGTTGATGGCCTAGTGGTGGTGGCTTGAGTTGGCATGTGAGAG
GGCTTTAGTTCGAATCCCTTGGCACGCAAAGGTTGATTATTTTGCTATGTTGGGATGGCAAGAGT
TGGTGTTGGT
Found at i:32554536 original size:27 final size:27
Alignment explanation
Indices: 32554494--32554666 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
32554484 TGGATAAGTT
* * * * *
32554494 GTAGAAGTACTGAAATACCCTTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
32554521 GTAGAATTACCAAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
32554548 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
32554575 GTAGAATTACCGAAATACCTCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
32554602 ATAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
32554629 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
32554656 GTAAAATTACC
1 GTAGAATTACC
32554667 ATTTTACCCC
Statistics
Matches: 125, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:32555362 original size:29 final size:27
Alignment explanation
Indices: 32555316--32555379 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 27
32555306 CCTCGCTGCA
*
32555316 ATCTGGTGGCTTCACCACATATATATCTGT
1 ATCTGGTGGCCTCACCAC--A-ATATCTGT
32555346 -TCTGGTGGCCT-AGCCACAATATCTGT
1 ATCTGGTGGCCTCA-CCACAATATCTGT
32555372 ATCTGGTG
1 ATCTGGTG
32555380 ACTTTGTCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
26 8 0.26
27 8 0.26
28 1 0.03
29 14 0.45
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.34
Consensus pattern (27 bp):
ATCTGGTGGCCTCACCACAATATCTGT
Found at i:32555390 original size:27 final size:26
Alignment explanation
Indices: 32555338--32555396 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
32555328 CACCACATAT
*
32555338 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
32555364 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
32555391 ATATCT
1 ATATCT
32555397 TGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:32561093 original size:27 final size:27
Alignment explanation
Indices: 32561059--32561257 Score: 265
Period size: 27 Copynumber: 7.4 Consensus size: 27
32561049 AGGATAAGTT
* *
32561059 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
32561086 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
32561113 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
32561140 GTAGAATTACCGAAATA-CCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
32561166 GTAGAAGTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
32561193 GTAGAATTACTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
32561220 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
32561247 GTAAAATTACC
1 GTAGAATTACC
32561258 ATTTTGCCCC
Statistics
Matches: 149, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 24 0.16
27 125 0.84
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:32561143 original size:54 final size:54
Alignment explanation
Indices: 32561059--32561257 Score: 301
Period size: 54 Copynumber: 3.7 Consensus size: 54
32561049 AGGATAAGTT
* *
32561059 GTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* *
32561113 GTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTGTAGG
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * *
32561166 GTAGAAGTATCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGG
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * *
32561220 GTAGAATTATCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACC
32561258 ATTTTGCCCC
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 49 0.38
54 81 0.62
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (54 bp):
GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
Found at i:32561193 original size:80 final size:81
Alignment explanation
Indices: 32561059--32561249 Score: 294
Period size: 80 Copynumber: 2.4 Consensus size: 81
32561049 AGGATAAGTT
* * *
32561059 GTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAGTACCGAAATACCCCTGTAGGGTAGAATTACT
*
32561124 GAAATACCCCTGTAGG
66 GAAATACCCCTATAGG
* *
32561140 GTAGAATTACCGAAATACCC-TGTAGGGTAGAAGTATCGAAATACCCTTGTAGGGTAGAATTACT
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAGTACCGAAATACCCCTGTAGGGTAGAATTACT
32561204 GAAATACCCCTATAGG
66 GAAATACCCCTATAGG
* * *
32561220 GTAGAATTATCGAGATACCCTTGTGGGGTA
1 GTAGAATTACCGAAATACCCTTGTAGGGTA
32561250 AAATTACCAT
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 72 0.72
81 28 0.28
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCTTGTAGGGTAGAAGTACCGAAATACCCCTGTAGGGTAGAATTACT
GAAATACCCCTATAGG
Found at i:32561249 original size:107 final size:107
Alignment explanation
Indices: 32561059--32561257 Score: 308
Period size: 107 Copynumber: 1.9 Consensus size: 107
32561049 AGGATAAGTT
* * *
32561059 GTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATT
1 GTAGAAGTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATC
*
32561124 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGG
66 GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTGTAGG
* * *
32561166 GTAGAAGTATCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTATC
1 GTAGAAGTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATC
* * *
32561231 GAGATACCCTTGTGGGGTAAAATTACC
66 GAAATACCCCTGTAGGGTAAAATTACC
32561258 ATTTTGCCCC
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
107 82 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (107 bp):
GTAGAAGTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATC
GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTGTAGG
Found at i:32561953 original size:27 final size:26
Alignment explanation
Indices: 32561909--32561960 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32561899 CTCGCTACAA
*
32561909 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
32561936 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
32561961 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:32563905 original size:180 final size:179
Alignment explanation
Indices: 32563604--32563928 Score: 488
Period size: 180 Copynumber: 1.8 Consensus size: 179
32563594 ATTTTCTCTA
* * * * * *
32563604 AAACTAGACTCATATATTTTCTTACCATAAAATTTTCATAATTTTGGTTTAGTCAATTAGTACAT
1 AAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTAGTTTAGCCAATTAGTACAG
* * * * *
32563669 TTTATTCATTGAAGATACCTCTATTTCACTGTCTGATAGTTCTGACCTCTCTTCACTAAAAGTTA
66 TTTATTCATTAAAGATACCCCTATTTCACTGTCTGACAGTTCTAACCTCTCTTCACTAAAAATTA
*
32563734 TTTATTTCATGGTACGGGACTCCAAATTAAGAACAACTAATTTTACTAG
131 TTTATCTCATGGTACGGGACTCCAAATTAAGAACAACTAATTTTACTAG
*
32563783 AAACTATACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATTAGTACA
1 AAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAA-TTTTAGTTTAGCCAATTAGTACA
* * * *
32563848 GTTTATTCATTAAATATTCCCCTATTTGACTGTTTGACAGTTCTAACCTCTCTTCACTAAAAATT
65 GTTTATTCATTAAAGATACCCCTATTTCACTGTCTGACAGTTCTAACCTCTCTTCACTAAAAATT
32563913 ATTTATCTCATGGTAC
130 ATTTATCTCATGGTAC
32563929 AGCTCTCGGA
Statistics
Matches: 128, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
179 37 0.29
180 91 0.71
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (179 bp):
AAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTAGTTTAGCCAATTAGTACAG
TTTATTCATTAAAGATACCCCTATTTCACTGTCTGACAGTTCTAACCTCTCTTCACTAAAAATTA
TTTATCTCATGGTACGGGACTCCAAATTAAGAACAACTAATTTTACTAG
Found at i:32564280 original size:15 final size:15
Alignment explanation
Indices: 32564256--32564286 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32564246 AATTGTTTTA
32564256 TTACAAAATTTCACT
1 TTACAAAATTTCACT
*
32564271 TTACATAATTTCACT
1 TTACAAAATTTCACT
32564286 T
1 T
32564287 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
TTACAAAATTTCACT
Found at i:32564794 original size:101 final size:100
Alignment explanation
Indices: 32564498--32564880 Score: 331
Period size: 101 Copynumber: 3.8 Consensus size: 100
32564488 TGGTATGCAA
* * * * * * * *
32564498 AGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACCTAGTAGCTTACACTTA
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTTA
** * * * * *
32564563 GTACTACACA-GTGACTTATCCATCTGATACACGT
66 GTACTACACACGTGACCAAACAATCGGGTACACAT
* * * * * * * * * * *
32564597 ACTAGCCTACACTTAATACTACACACGTGA-TTGAAGTTAA-CGGGTTCGCATGGTAGCCTGCAC
1 AGTAGCCTGCACTTAGTACTACACACGTGACCT-AA--CAATCTGATACACGTAGTAGCCTGCAC
* * * * * *
32564660 TTAGTACTACACATGCGACCTATCAATCTGGTACACGT
63 TTAGTACTACACACGTGACCAAACAATCGGGTACACAT
* * * *
32564698 AGTAGCCTGTAGTTAGTACTACACACGTGACCTAACCATCTGATACATGTAGTAGCCTGCACTTA
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTTA
* * *
32564763 GTACTACACACGTGATCGAAACTATCGGGTACGCAT
66 GTACTACACACGTGA-CCAAACAATCGGGTACACAT
* * *
32564799 AGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGCATGCACTTA
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTTA
32564864 GTACTACACACGTGACC
66 GTACTACACACGTGACC
32564881 TAAATTTGTC
Statistics
Matches: 225, Mismatches: 52, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
98 1 0.00
99 26 0.12
100 62 0.28
101 135 0.60
102 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (100 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACCAAACAATCGGGTACACAT
Found at i:32564806 original size:151 final size:151
Alignment explanation
Indices: 32564489--32564883 Score: 576
Period size: 151 Copynumber: 2.6 Consensus size: 151
32564479 GAAGCTCTCT
* * * *
32564489 GGTATGCAAAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACCTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
32564554 TTACACTTAGTACTACACA-GTGACTTATCCATCTGATACACGTACTAGCCTACACTTAATACTA
66 ATGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTACTAGCCTACACTTAATACTA
* **
32564618 CACACGTGATTGAAGTTAACG
131 CACACGTGATCGAAACTAACG
* *
32564639 GGTTCGCATGGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * * * *
32564704 CTGTAGTTAGTACTACACACGTGACCTAACCATCTGATACATGTAGTAGCCTGCACTTAGTACTA
66 ATGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTACTAGCCTACACTTAATACTA
*
32564769 CACACGTGATCGAAACTATCG
131 CACACGTGATCGAAACTAACG
* *
32564790 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
32564855 ATGCACTTAGTACTACACACGTGACCTAA
66 ATGCACTTAGTACTACACACGTGACCTAA
32564884 ATTTGTCTTA
Statistics
Matches: 217, Mismatches: 27, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
150 74 0.34
151 143 0.66
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
ATGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTACTAGCCTACACTTAATACTA
CACACGTGATCGAAACTAACG
Found at i:32564883 original size:50 final size:50
Alignment explanation
Indices: 32564498--32564883 Score: 382
Period size: 50 Copynumber: 7.7 Consensus size: 50
32564488 TGGTATGCAA
* * * * *
32564498 AGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACCT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
* * * * * *
32564548 AGTAGCTTACACTTAGTACTACACA-GTGACTTATCCATCTGATACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
* * * * * * * * *
32564597 ACTAGCCTACACTTAATACTACACACGTGA-TTGAAGTTAA-CGGGTTCGCAT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCT-AA--CAATCTGGTACACGT
* * * *
32564648 GGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
* * * * *
32564698 AGTAGCCTGTAGTTAGTACTACACACGTGACCTAACCATCTGATACATGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
** * * * *
32564748 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACGCAT
1 AGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCTGGTACACGT
*
32564799 AGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
*
32564849 AGTAGCATGCACTTAGTACTACACACGTGACCTAA
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAA
32564884 ATTTGTCTTA
Statistics
Matches: 271, Mismatches: 58, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
49 45 0.17
50 152 0.56
51 72 0.27
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
Done.