Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 110 of 410
Found at i:32570243 original size:26 final size:27
Alignment explanation
Indices: 32570214--32570265 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
32570204 TGATCAATAC
* *
32570214 TAAAAATTAAAATTA-GAAAACAAAAT
1 TAAAAATTAAAACTATGAAAAAAAAAT
*
32570240 TAAAAATTGAAACTATGAAAAAAAAA
1 TAAAAATTAAAACTATGAAAAAAAAA
32570266 ATAACACACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (27 bp):
TAAAAATTAAAACTATGAAAAAAAAAT
Found at i:32574184 original size:35 final size:37
Alignment explanation
Indices: 32574113--32574210 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
32574103 ATAATCTTCA
32574113 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
32574151 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
32574186 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
32574211 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:32574210 original size:17 final size:19
Alignment explanation
Indices: 32574113--32574203 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
32574103 ATAATCTTCA
32574113 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32574132 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32574151 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32574168 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32574186 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
32574204 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32574229 original size:22 final size:22
Alignment explanation
Indices: 32574113--32574226 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
32574103 ATAATCTTCA
32574113 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32574132 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32574151 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32574168 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32574186 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
32574208 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
32574227 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:32576291 original size:27 final size:26
Alignment explanation
Indices: 32576253--32576365 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 26
32576243 CAGCATGGCT
* *
32576253 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
**
32576279 ACCAGATACAGATAACCATGGCAGAGCC
1 ACCAGA-ACAGATAA-TGTGGCAGAGCC
32576307 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
*
32576334 ACCA-AATCAGATAATTGTGGCATAGCC
1 ACCAGAA-CAGATAA-TGTGGCAGAGCC
32576361 ACCAG
1 ACCAG
32576366 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 9 0.12
27 50 0.68
28 15 0.20
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:32576345 original size:54 final size:54
Alignment explanation
Indices: 32576253--32576365 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
32576243 CAGCATGGCT
* *
32576253 ACCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAACCATGGCAGAGCC
1 ACCAGAACAGATAATGTGACAGAGCCACCAAATACAGATAACCATGGCAGAGCC
* *** *
32576307 ACCAGAACAGATATATGTGGCAGAGCCACCAAAT-CAGATAATTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCCACCAAATACAGATAACCATGGCAGAGCC
32576361 ACCAG
1 ACCAG
32576366 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (54 bp):
ACCAGAACAGATAATGTGACAGAGCCACCAAATACAGATAACCATGGCAGAGCC
Found at i:32579409 original size:8 final size:8
Alignment explanation
Indices: 32579396--32579428 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
32579386 CTAGATCGGC
32579396 AAAAGCCG
1 AAAAGCCG
32579404 AAAAGCCG
1 AAAAGCCG
*
32579412 AAATGCCG
1 AAAAGCCG
32579420 AAAAGCCG
1 AAAAGCCG
32579428 A
1 A
32579429 TATTTTGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.48, C:0.24, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:32579878 original size:27 final size:26
Alignment explanation
Indices: 32579838--32579943 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 26
32579828 AGGAAGAGTC
*
32579838 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
32579865 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
32579892 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
32579920 CTGGTGACTCTGTCACATTATCTG
1 CTGGTGGCTCTGCCACATTATCTG
32579944 TTTTGGCAGC
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
26 2 0.03
27 52 0.73
28 17 0.24
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:32579942 original size:54 final size:54
Alignment explanation
Indices: 32579838--32579945 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 54
32579828 AGGAAGAGTC
*
32579838 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
32579892 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
32579946 TTGGCAGCCA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 31 0.63
55 18 0.37
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:32581131 original size:19 final size:20
Alignment explanation
Indices: 32581107--32581144 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
32581097 GGTACCACCA
32581107 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
32581126 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
32581145 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:32581949 original size:29 final size:30
Alignment explanation
Indices: 32581917--32581975 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32581907 ATTTAATACG
*
32581917 AACTTTAGAA-AATTATACTTTTGCCCCTA
1 AACTTTAGAATAATTACACTTTTGCCCCTA
*
32581946 AACTTTTGAATAATTACACTTTTGCCCCTA
1 AACTTTAGAATAATTACACTTTTGCCCCTA
32581976 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (30 bp):
AACTTTAGAATAATTACACTTTTGCCCCTA
Found at i:32591070 original size:220 final size:220
Alignment explanation
Indices: 32590684--32591278 Score: 987
Period size: 220 Copynumber: 2.7 Consensus size: 220
32590674 GTAACAGGCT
* * * *
32590684 AAAG-CATAGCAGATTTGACCTTCAGGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAGCATCT
** * *
32590748 CTACATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTACATATTCGACGGAGAGCAGAT
66 CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTTCATATTCGACGGAGAGCAGAT
*
32590813 CGAAGACATAGTAGATCTAACCTTCAGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
131 CGAAGACATAGAAGATCTAACCTTCAGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
* * *
32590878 TCCTTGTGTTTACAAGGAGCATATC
196 TCCTTGCGCTTACAAGGAGCAGATC
*
32590903 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAGCATCT
* *
32590968 CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTTCATATTCGACGGAAAGAAGAT
66 CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTTCATATTCGACGGAGAGCAGAT
*
32591033 CGAAGACATAGAAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
131 CGAAGACATAGAAGATCTAACCTTCAGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
32591098 TCCTTGCGCTTACAAGGAGCAGATC
196 TCCTTGCGCTTACAAGGAGCAGATC
* *
32591123 GAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAGCATTT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAGCATCT
*
32591188 CTGTACTGTTAGAGAACAAATCGAAGAAACAGATTTGGCATC-TCTATATTCGACGGAGAGCAGA
66 CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTTC-ATATTCGACGGAGAGCAGA
*
32591252 TCGAAGACATAGCAGATCTAACCTTCA
130 TCGAAGACATAGAAGATCTAACCTTCA
32591279 TTAAAGCAGA
Statistics
Matches: 350, Mismatches: 24, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
219 6 0.02
220 344 0.98
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (220 bp):
AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAGCATCT
CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTTCATATTCGACGGAGAGCAGAT
CGAAGACATAGAAGATCTAACCTTCAGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
TCCTTGCGCTTACAAGGAGCAGATC
Found at i:32591347 original size:77 final size:78
Alignment explanation
Indices: 32591219--32591509 Score: 406
Period size: 78 Copynumber: 3.7 Consensus size: 78
32591209 CGAAGAAACA
* * * * *
32591219 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCATTAAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
32591284 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
32591297 GATTTGGCATCTCTATATTAG-CGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
32591361 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
32591374 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTGA
32591438 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * * * *
32591452 GATTTGTCATCTCTGTATTAGATGGGGAGCAAATAAAAAACATAGCAGATCTGACCTT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTT
32591510 TATGTGTTTA
Statistics
Matches: 191, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
77 71 0.37
78 119 0.62
79 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:32591651 original size:44 final size:45
Alignment explanation
Indices: 32591541--32591725 Score: 264
Period size: 45 Copynumber: 4.1 Consensus size: 45
32591531 ATCCAAAATG
* * *
32591541 ACAGATTTGGCATCTCTGTATTAGGCGGGGAGCAAATCGGAGATA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATA
*
32591586 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-A
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATA
** *
32591630 GTAGATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGATA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATA
* * *
32591675 ACGGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATA
*
32591720 GCAGAT
1 ACAGAT
32591726 ATCGCCCTCT
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
44 40 0.33
45 83 0.67
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (45 bp):
ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATA
Found at i:32591659 original size:89 final size:89
Alignment explanation
Indices: 32591543--32591711 Score: 284
Period size: 89 Copynumber: 1.9 Consensus size: 89
32591533 CCAAAATGAC
* *
32591543 AGATTTGGCATCTCTGTATTAGGCGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTATT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
32591608 AGACGGGGAGCAGATTGAAGAAGT
66 AGACGGGGAGCAGATTGAAGAAGT
* * * *
32591632 AGATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGATAACGGATTTGGCGTCTCTGTATT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
32591697 AGACGGGGAGCAGAT
66 AGACGGGGAGCAGAT
32591712 CAAAGATAGC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.27
Consensus pattern (89 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
AGACGGGGAGCAGATTGAAGAAGT
Found at i:32592147 original size:35 final size:36
Alignment explanation
Indices: 32592084--32592154 Score: 117
Period size: 35 Copynumber: 2.0 Consensus size: 36
32592074 CAATGACATG
* *
32592084 CAATCTTAGATATGATATGCAATTTTAGATATGATA
1 CAATATTAGATATGATATGCAATCTTAGATATGATA
32592120 CAATATTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATATTAGATATGATATGCAATCTTAGATATGATA
32592155 TGCAATCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 18 0.55
36 15 0.45
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.38
Consensus pattern (36 bp):
CAATATTAGATATGATATGCAATCTTAGATATGATA
Found at i:32592173 original size:17 final size:19
Alignment explanation
Indices: 32592076--32592166 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
32592066 ATAATCTTCA
*
32592076 ATGACATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
32592095 ATGATATGCAATTTTAGAT
1 ATGATATGCAATCTTAGAT
*
32592114 ATGATA--CAATATTAGAT
1 ATGATATGCAATCTTAGAT
32592131 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32592149 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
32592167 AGATATGATT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 15 0.23
18 15 0.23
19 35 0.54
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32592192 original size:22 final size:22
Alignment explanation
Indices: 32592127--32592189 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
32592117 ATACAATATT
32592127 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
32592145 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
32592167 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
32592190 GATTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
18 9 0.24
19 9 0.24
22 8 0.21
23 12 0.32
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:32592480 original size:19 final size:18
Alignment explanation
Indices: 32592456--32592493 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
32592446 AGTTTCCCTG
*
32592456 ATTTTTTAATATATATTTT
1 ATTTTTTAAAATA-ATTTT
32592475 ATTTTTTAAAATAATTTT
1 ATTTTTTAAAATAATTTT
32592493 A
1 A
32592494 GTATCATATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTTTTAAAATAATTTT
Found at i:32598218 original size:39 final size:40
Alignment explanation
Indices: 32598117--32598299 Score: 207
Period size: 39 Copynumber: 4.7 Consensus size: 40
32598107 TCGAATGATG
*
32598117 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAAA
* * * *
32598157 TCCAGACTAAGAT-CCGAAGGCATTTGTGCTCGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTTACTAAA
*
32598197 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAAA
* *
32598235 TCCGGGTTAAGTCCCGAAGGCATTT-TGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-AA
* *
32598275 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32598300 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 24 0.20
39 51 0.42
40 37 0.31
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAAA
Found at i:32598321 original size:78 final size:78
Alignment explanation
Indices: 32598118--32598332 Score: 190
Period size: 78 Copynumber: 2.7 Consensus size: 78
32598108 CGAATGATGT
* * * * **
32598118 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCAGACTAAGAT-CCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATTT
** *
32598182 GTGCTCGTTACTAATT
63 GTGCAAGTTACTAATA
*
32598198 CCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT-TG
1 CCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTG
32598262 CAAGTTACT-ATAA
66 CAAGTTACTAAT-A
* * * *
32598275 CCGGGCTATGTCCTGAAGGCATT-TGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTGTG--CGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
32598333 TACGTGATTC
Statistics
Matches: 114, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
76 2 0.02
77 21 0.18
78 55 0.48
79 26 0.23
80 10 0.09
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTG
CAAGTTACTAATA
Found at i:32602626 original size:40 final size:40
Alignment explanation
Indices: 32602567--32602735 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
32602557 CGGGACTTTA
* * *
32602567 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
32602607 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
32602647 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
32602687 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
32602727 CCCGGATAT
1 CCCGGATAT
32602736 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:32609960 original size:40 final size:40
Alignment explanation
Indices: 32609901--32610069 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 40
32609891 CGGGACTTTA
* * *
32609901 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
32609941 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * * *
32609981 CCCGGATATAGCTACTAGCACAATTTCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
32610021 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
32610061 CCCGGATAT
1 CCCGGATAT
32610070 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 97 0.93
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:32613969 original size:40 final size:39
Alignment explanation
Indices: 32613801--32613971 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
32613791 AGAAATTGAA
* *
32613801 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
32613841 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
32613881 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
32613921 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
32613961 TGATATCCGGG
1 TGATATCCGGG
32613972 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:32621991 original size:40 final size:39
Alignment explanation
Indices: 32621823--32621993 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
32621813 AGAAATTGAA
* *
32621823 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
32621863 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
32621903 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
32621943 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
32621983 TGATATCCGGG
1 TGATATCCGGG
32621994 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:32630090 original size:34 final size:34
Alignment explanation
Indices: 32630047--32630114 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
32630037 GACTTGTGGT
32630047 GAAGAACTGGTTAAGATTTTGGCAAGAGAAGTTA
1 GAAGAACTGGTTAAGATTTTGGCAAGAGAAGTTA
32630081 GAAGAACTGGTTAAGATTTTGGCAAGAGAAGTTA
1 GAAGAACTGGTTAAGATTTTGGCAAGAGAAGTTA
32630115 AGTAATTGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.06, G:0.29, T:0.26
Consensus pattern (34 bp):
GAAGAACTGGTTAAGATTTTGGCAAGAGAAGTTA
Found at i:32633151 original size:40 final size:40
Alignment explanation
Indices: 32633087--32633293 Score: 235
Period size: 40 Copynumber: 5.2 Consensus size: 40
32633077 TCTTCAGAAT
* **
32633087 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACGAA-TGCCTTCGGGTC
* * *** *
32633126 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
*
32633166 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
32633206 TTAGCCCGGATATAACAAC-TGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
** *
32633245 TTAGCCCGGATATAATC-A-TTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTT-GCACGAATGCCTTCGGGTC
32633285 TTAGCCCGG
1 TTAGCCCGG
32633294 GTATCATTCA
Statistics
Matches: 144, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 39 0.27
40 103 0.72
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
Found at i:32633247 original size:79 final size:78
Alignment explanation
Indices: 32633087--32633293 Score: 247
Period size: 79 Copynumber: 2.6 Consensus size: 78
32633077 TCTTCAGAAT
* * * ***
32633087 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCAC
32633151 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
*
32633166 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAAC-TGCAC
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCAC
*
32633230 GAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* * *
32633245 TTAGCCCGGATATAATCATTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
32633294 GTATCATTCA
Statistics
Matches: 111, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
79 66 0.59
80 43 0.39
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAA
ATGCCTTCGGGTC
Found at i:32636407 original size:54 final size:56
Alignment explanation
Indices: 32636287--32636445 Score: 166
Period size: 56 Copynumber: 2.9 Consensus size: 56
32636277 TTTGATGACA
* * * *
32636287 TGATACATGCT-GAGTCCGGGAGCTTGTGTTGCCC-ATTGAGAGGCAT-GTAATTATG
1 TGATACATGCTAGA-TCCGGGAGCTTATGTAGCCCTGTTGAGAGGCGTGGTAA-TATG
*
32636342 TGGTACATGCTAGATCCGGGAGCTTATGTAGCCCTGTTGAGAGGCGTGGT-A-ATG
1 TGATACATGCTAGATCCGGGAGCTTATGTAGCCCTGTTGAGAGGCGTGGTAATATG
* * * *
32636396 TGATGCATGCTAGGTCCGAGTGCTCATATGTAGCCCTGTTGAGAGGCGTG
1 TGATACATGCTAGATCCGGGAGCT--TATGTAGCCCTGTTGAGAGGCGTG
32636446 CTATGTCATG
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
54 22 0.25
55 28 0.31
56 37 0.42
57 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (56 bp):
TGATACATGCTAGATCCGGGAGCTTATGTAGCCCTGTTGAGAGGCGTGGTAATATG
Found at i:32651675 original size:29 final size:29
Alignment explanation
Indices: 32651630--32651712 Score: 132
Period size: 29 Copynumber: 2.9 Consensus size: 29
32651620 TCCAGAGTAT
*
32651630 TGATA-TCATGGCCCGAAGCCAAATCAGA
1 TGATATTCATGGCTCGAAGCCAAATCAGA
*
32651658 TGATATTCATGGCTCGAAGCCAAATCAGC
1 TGATATTCATGGCTCGAAGCCAAATCAGA
*
32651687 TGATATTCATGGCTCAAAGCCAAATC
1 TGATATTCATGGCTCGAAGCCAAATC
32651713 GGTATAACCC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 5 0.10
29 46 0.90
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (29 bp):
TGATATTCATGGCTCGAAGCCAAATCAGA
Found at i:32653000 original size:32 final size:32
Alignment explanation
Indices: 32652937--32653000 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
32652927 CCAAAACCGG
*
32652937 GTTGTTACAATCATACCCAAAGGAGGTGAGAT
1 GTTGTTACAATCATACCCAAAGGAGGCGAGAT
*
32652969 GTTGTTACAATCATACCCAAAGGATGCGAGAT
1 GTTGTTACAATCATACCCAAAGGAGGCGAGAT
32653001 TAAACTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.25
Consensus pattern (32 bp):
GTTGTTACAATCATACCCAAAGGAGGCGAGAT
Found at i:32653692 original size:23 final size:23
Alignment explanation
Indices: 32653666--32653711 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
32653656 TAAAATATAC
*
32653666 TTACAACTAAAAAGAAACCTAAA
1 TTACAACTAAAAAGAAAACTAAA
* *
32653689 TTACAAGTAAAAATAAAACTAAA
1 TTACAACTAAAAAGAAAACTAAA
32653712 CAGGAGATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.63, C:0.13, G:0.04, T:0.20
Consensus pattern (23 bp):
TTACAACTAAAAAGAAAACTAAA
Found at i:32655786 original size:28 final size:28
Alignment explanation
Indices: 32655754--32655850 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
32655744 GTGAAAACGA
*
32655754 CACTTAGTGTGCTAATTATTGAGGATGG
1 CACTTAGTGTGCAAATTATTGAGGATGG
* * *
32655782 CACTTAGTGTGCGAAA-CATCT-AGAAATAG
1 CACTTAGTGTGC-AAATTAT-TGAG-GATGG
*
32655811 CACTTAGTGTGCAAATTATTGAAGATGG
1 CACTTAGTGTGCAAATTATTGAGGATGG
32655839 CACTTAGTGTGC
1 CACTTAGTGTGC
32655851 GAGACATCTA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
28 35 0.62
29 21 0.38
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCAAATTATTGAGGATGG
Found at i:32655828 original size:57 final size:56
Alignment explanation
Indices: 32655754--32655878 Score: 187
Period size: 57 Copynumber: 2.2 Consensus size: 56
32655744 GTGAAAACGA
* *
32655754 CACTTAGTGTGCTAATTATTGAGGATGGCACTTAGTGTGCGAAACATCTAGAAATAG
1 CACTTAGTGTGCAAATTATTGAAGATGGCACTTAGTGTGCGAAACATCTAG-AATAG
* * *
32655811 CACTTAGTGTGCAAATTATTGAAGATGGCACTTAGTGTGCGAGACATCTAGGATGG
1 CACTTAGTGTGCAAATTATTGAAGATGGCACTTAGTGTGCGAAACATCTAGAATAG
*
32655867 AACTTAGTGTGC
1 CACTTAGTGTGC
32655879 GATACATCCC
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
56 14 0.23
57 48 0.77
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (56 bp):
CACTTAGTGTGCAAATTATTGAAGATGGCACTTAGTGTGCGAAACATCTAGAATAG
Found at i:32655865 original size:28 final size:28
Alignment explanation
Indices: 32655775--32655886 Score: 120
Period size: 28 Copynumber: 4.0 Consensus size: 28
32655765 CTAATTATTG
32655775 AGGATGGCACTTAGTGTGCGAAACATCT
1 AGGATGGCACTTAGTGTGCGAAACATCT
* * *
32655803 AGAAATAGCACTTAGTGTGC-AAATTAT-T
1 AG-GATGGCACTTAGTGTGCGAAA-CATCT
* *
32655831 GAAGATGGCACTTAGTGTGCGAGACATCT
1 -AGGATGGCACTTAGTGTGCGAAACATCT
* *
32655860 AGGATGGAACTTAGTGTGCGATACATC
1 AGGATGGCACTTAGTGTGCGAAACATC
32655887 CCTGAAGGCA
Statistics
Matches: 68, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
28 47 0.69
29 21 0.31
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGATGGCACTTAGTGTGCGAAACATCT
Found at i:32658097 original size:51 final size:51
Alignment explanation
Indices: 32657998--32658097 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
32657988 CTACTGCATA
* * ** *
32657998 ACATGTAACACATCCATAATGAACTTGGACCTCTCAACGAGCTTGGATGTT
1 ACATGTAACACATCCATAATGAACTCGGACCACTCAAAAAGCTCGGATGTT
*
32658049 ACATG-AATCACATCCATCATGAACTCGGACCACTCAAAAAGCTCGGATG
1 ACATGTAA-CACATCCATAATGAACTCGGACCACTCAAAAAGCTCGGATG
32658098 CTCACATCTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (51 bp):
ACATGTAACACATCCATAATGAACTCGGACCACTCAAAAAGCTCGGATGTT
Found at i:32660156 original size:21 final size:22
Alignment explanation
Indices: 32660132--32660177 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
32660122 CTACACACCA
32660132 CAGAAT-TTGTAACGAAG-CTAC
1 CAGAATATTGTAACGAAGTC-AC
*
32660153 CAG-ATATTGTGACGAAGTCAC
1 CAGAATATTGTAACGAAGTCAC
32660174 CAGA
1 CAGA
32660178 TACAGATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
20 2 0.10
21 18 0.86
22 1 0.05
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (22 bp):
CAGAATATTGTAACGAAGTCAC
Found at i:32660178 original size:21 final size:21
Alignment explanation
Indices: 32660138--32660179 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32660128 ACCACAGAAT
32660138 TTGTAACGAAGCTACCAGATA
1 TTGTAACGAAGCTACCAGATA
*
32660159 TTGTGACGAAG-TCACCAGATA
1 TTGTAACGAAGCT-ACCAGATA
32660180 CAGATATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (21 bp):
TTGTAACGAAGCTACCAGATA
Found at i:32660299 original size:27 final size:26
Alignment explanation
Indices: 32660251--32660302 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32660241 ACGAGGTTGG
*
32660251 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
32660277 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
32660303 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32660926 original size:26 final size:27
Alignment explanation
Indices: 32660897--32660950 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
32660887 TCAAACAAGC
*
32660897 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
32660923 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
32660950 T
1 T
32660951 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:32661026 original size:52 final size:52
Alignment explanation
Indices: 32660969--32661069 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
32660959 TATCGCACAA
* *
32660969 GGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTAAC
1 GGGTATCTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTAAC
*
32661021 GGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCT
1 GGGTATCTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCT
32661070 TACAGGGGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (52 bp):
GGGTATCTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTAAC
Found at i:32661090 original size:27 final size:27
Alignment explanation
Indices: 32660980--32661082 Score: 156
Period size: 27 Copynumber: 3.9 Consensus size: 27
32660970 GGTATCTCGA
*
32660980 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
32661007 TAATTCTA-CCTA-ACGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
32661032 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
32661059 TAATTCTACCTTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
32661083 TGGTAATTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
25 18 0.26
26 8 0.12
27 42 0.62
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:32670187 original size:41 final size:41
Alignment explanation
Indices: 32670142--32670259 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32670132 TGAAAGATAA
32670142 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32670183 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32670213 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32670254 ATGTAG
1 ATGTAG
32670260 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32670198 original size:71 final size:71
Alignment explanation
Indices: 32670110--32670273 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32670100 GAGATGTATC
32670110 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32670175 AGGACA
66 AGGACA
32670181 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32670246 AGGACA
66 AGGACA
32670252 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32670274 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32681148 original size:25 final size:24
Alignment explanation
Indices: 32681114--32681160 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
32681104 GATGAGTATG
32681114 ATGCACACTTAAGAATTGTGTTGC
1 ATGCACACTTAAGAATTGTGTTGC
*
32681138 ATGCATCACTTAAGGATTGTGTT
1 ATGCA-CACTTAAGAATTGTGTT
32681161 ACAGACTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (24 bp):
ATGCACACTTAAGAATTGTGTTGC
Found at i:32683116 original size:60 final size:59
Alignment explanation
Indices: 32682981--32683119 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 59
32682971 TTTAGTGTTA
* *
32682981 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGCAACAGAGTAT
1 ACTGGGCCTT-GCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGC-ACAGAGTAT
* * * *
32683042 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAG-TC-GAGATAT
1 ACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGCACAGAG-TAT
*
32683102 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTTGCCCATAT
32683120 TAACACAGTT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
59 3 0.04
60 49 0.73
61 13 0.19
62 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGCACAGAGTAT
Found at i:32683141 original size:19 final size:19
Alignment explanation
Indices: 32683112--32683166 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
32683102 ATTGGGCCTT
32683112 GCCCATATTAACACAGTTG
1 GCCCATATTAACACAGTTG
* * *
32683131 GGCCATTTTAATACAGTTG
1 GCCCATATTAACACAGTTG
* *
32683150 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
32683167 CTCATATGAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (19 bp):
GCCCATATTAACACAGTTG
Found at i:32684486 original size:17 final size:18
Alignment explanation
Indices: 32684464--32684501 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32684454 TGAGAGAAGG
32684464 ATAGAA-AA-GAATAAAAA
1 ATAGAAGAAGGAA-AAAAA
32684481 ATAGAAGAAGGAAAAAAA
1 ATAGAAGAAGGAAAAAAA
32684499 ATA
1 ATA
32684502 AATCCTAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 10 0.53
19 3 0.16
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (18 bp):
ATAGAAGAAGGAAAAAAA
Found at i:32690371 original size:93 final size:93
Alignment explanation
Indices: 32690212--32690383 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
32690202 GGATGGTTGA
* * * *
32690212 GCATCCGAGCTCGTTGAGTTGAGTCCGACTTCATTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
32690277 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
32690305 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTAAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
32690370 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32690384 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:32690388 original size:46 final size:46
Alignment explanation
Indices: 32690216--32690390 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
32690206 GGTTGAGCAT
* * * *
32690216 CCGAGCTCGTTGAGTTGAGTCCGACTTCATTTATGGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
32690262 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
32690307 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
32690355 CCGAGCTCGTTAAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32690391 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 60 0.57
47 27 0.26
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:32694222 original size:29 final size:29
Alignment explanation
Indices: 32694187--32694326 Score: 158
Period size: 29 Copynumber: 4.9 Consensus size: 29
32694177 TGAATATAAG
* *
32694187 GTGATTTGGGCCTAACGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* *
32694216 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* * *
32694245 ATGAATTGGGCCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* * *
32694274 GTAAATTGGGCCTGATGGACCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
*
32694303 GAG-ATTGGGCC-AAGTGGGCCATAT
1 GTGAATTGGGCCTAA-TGGGCCATAT
32694327 GCAAGTATGT
Statistics
Matches: 97, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
27 1 0.01
28 17 0.18
29 79 0.81
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATAAAT
Found at i:32696301 original size:27 final size:27
Alignment explanation
Indices: 32696271--32696503 Score: 295
Period size: 27 Copynumber: 8.6 Consensus size: 27
32696261 TTAGTTTACC
32696271 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * **
32696298 AAATTACCAAAACACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
32696325 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
32696352 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
32696379 AAATTACCAAAATACTCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
32696406 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
32696433 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
32696460 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
32696487 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
32696504 TCGACCTATA
Statistics
Matches: 177, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 177 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:32696516 original size:81 final size:80
Alignment explanation
Indices: 32696271--32696556 Score: 292
Period size: 81 Copynumber: 3.5 Consensus size: 80
32696261 TTAGTTTACC
* * * **
32696271 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAACACCCTTAGTTTACAAAATTACCAAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAA
*
32696336 ATACCCTTGGTTTGTA
65 ATACCCTCGGTTTGTA
* * *
32696352 AAATTA-CTAAAATACCCTTTGTTTATAAAATTACCAAAATACTCCTAGTTTGTAAAATTACCAA
1 AAATTATC-AAAATACCCCTAGTTTGTAAAATTACCAAAATAC-CCTAGTTTGTAAAATTACCAA
32696416 AATACCC-CTGGTTTGTA
64 AATACCCTC-GGTTTGTA
* **
32696433 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCCT-GATTTGTGAAATTACTGA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCCTAG-TTTGTAAAATTACCAA
*** *
32696497 AATACCCTCGACCTATA
64 AATACCCTCGGTTTGTA
** * * *
32696514 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACC
1 AAATTATCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACC
32696557 ATTGATTTAC
Statistics
Matches: 175, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
80 9 0.05
81 161 0.92
82 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (80 bp):
AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAA
TACCCTCGGTTTGTA
Found at i:32696556 original size:27 final size:27
Alignment explanation
Indices: 32696271--32696556 Score: 235
Period size: 27 Copynumber: 10.6 Consensus size: 27
32696261 TTAGTTTACC
*
32696271 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
32696298 AAATTACCAAAACACCCT-TAGTTTACA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
32696325 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
32696352 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
32696379 AAATTACCAAAATACTCCTAG-TTTGTA
1 AAATTACCAAAATAC-CCTCGATTTGTA
*
32696406 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
32696433 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
32696460 AAATTACCAAAATATCCCT-GATTTGTG
1 AAATTACCAAAATA-CCCTCGATTTGTA
** ** *
32696487 AAATTACTGAAATACCCTCGACCTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
32696514 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
32696541 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
32696557 ATTGATTTAC
Statistics
Matches: 213, Mismatches: 35, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.03
27 197 0.92
28 9 0.04
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:32696916 original size:27 final size:26
Alignment explanation
Indices: 32696878--32696957 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 26
32696868 ATTCTGTTAA
*
32696878 GTGGCTTGCCACATTATCTGTTTCTG
1 GTGGCTTGCCACAATATCTGTTTCTG
32696904 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCT-TGCCAC-AATATCTGTTTCTG
*
32696931 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCT-TGCCACAATATCTGTTTCTG
32696958 ATAACTGAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 14 0.29
27 27 0.56
28 7 0.15
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
GTGGCTTGCCACAATATCTGTTTCTG
Found at i:32697167 original size:12 final size:12
Alignment explanation
Indices: 32697117--32697182 Score: 71
Period size: 12 Copynumber: 5.4 Consensus size: 12
32697107 TTACCTGATA
*
32697117 CTGATTCTGGTT
1 CTGATTCTAGTT
*
32697129 TTGATTCT-GTT
1 CTGATTCTAGTT
*
32697140 ACCTGATACTAGTT
1 --CTGATTCTAGTT
*
32697154 CTGATTCTAATT
1 CTGATTCTAGTT
32697166 CTGATTCTAGTT
1 CTGATTCTAGTT
32697178 CTGAT
1 CTGAT
32697183 AATGTTTCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
11 3 0.07
12 33 0.73
13 6 0.13
14 3 0.07
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.48
Consensus pattern (12 bp):
CTGATTCTAGTT
Found at i:32697167 original size:31 final size:31
Alignment explanation
Indices: 32697101--32697168 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
32697091 TCTAATTTTG
* * *
32697101 ATTCTGTTACCTGATACTGATTCTGGTTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTA
32697132 ATTCTGTTACCTGATACT-AGTTCTGATTCTA
1 ATTCTGTTACCTGATACTGA-TTCTGATTCTA
32697163 ATTCTG
1 ATTCTG
32697169 ATTCTAGTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 1 0.03
31 32 0.97
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTA
Found at i:32712691 original size:40 final size:40
Alignment explanation
Indices: 32712597--32712894 Score: 354
Period size: 40 Copynumber: 7.5 Consensus size: 40
32712587 GGATGATAAT
*
32712597 CGGGCTAAGTCCCGAAGGCATTT-TGC-A-CTAGTGACTAGTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT-A-TA--TC
* * * *
32712638 CGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
*
32712678 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
* * *
32712718 CGAGCTAAGTCCCGAAGGAATTTGTACGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
*
32712758 CGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
* *
32712798 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
* * * *
32712838 CGGGCTATGTCCCAAAGGCATTCGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-CTATATC
* *
32712878 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
32712895 TACATGGCTT
Statistics
Matches: 226, Mismatches: 27, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
39 14 0.06
40 181 0.80
41 23 0.10
42 3 0.01
43 2 0.01
44 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
Found at i:32725024 original size:71 final size:71
Alignment explanation
Indices: 32724936--32725099 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
32724926 GAGATGTATC
32724936 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32725001 AGGACA
66 AGGACA
*
32725007 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
32725072 CGGACA
66 AGGACA
32725078 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32725100 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32726606 original size:50 final size:49
Alignment explanation
Indices: 32726451--32726730 Score: 232
Period size: 50 Copynumber: 5.8 Consensus size: 49
32726441 AGGGTAAGGT
* ** * * * *
32726451 GCCGACGCCATGTCCTGGACATGGTCTTACACT-G-GCTCACACATCAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATC-AG
* * * * *
32726499 GTCGATGCCATGTCCCAGACATAGTCTTACA-TTGACTTTCGTATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATATC-AG
* * *
32726549 GCTGATGCCATGTCCCAGACATGGTCTTACGCTAGCTCTCATCTATCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAG
* * * *
32726598 TGCCGATGCCATGTCCCAAACATGGTCTTACACT-G---ACACATATCAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAG
* * * *
32726644 GCCAATGACATGTCCCAGAGATGGTCTTACACTAGCTCTCATATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATC-AG
* * *
32726694 GCCAATGCCATGTCCTAGGCATGGTCTTACACTAGCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
32726731 TTAATATCTC
Statistics
Matches: 183, Mismatches: 39, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
45 29 0.16
46 8 0.04
47 1 0.01
48 27 0.15
49 9 0.05
50 107 0.58
51 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAG
Found at i:32726717 original size:145 final size:148
Alignment explanation
Indices: 32726449--32726730 Score: 347
Period size: 145 Copynumber: 1.9 Consensus size: 148
32726439 ATAGGGTAAG
*** * * * *
32726449 GTGCCGACGCCATGTCCTGGACATGGTCTTACACTGGCTCACACATCAAAGTCGATGCCATGTCC
1 GTGCCGACGCCATGTCCCAAACATGGTCTTACACTGGCACACACATCAAAGCCAATGACATGTCC
* * * **
32726514 CAGACATAGTCTTACATTGACTTTCGTATATCGAGGCTGATGCCATGTCCCAGACATGGTCTTAC
66 CAGACATAGTCTTACATAGACTCTCATATATCGAGGCCAATGCCATGTCCCAGACATGGTCTTAC
*
32726579 GCTAGCTCTCATCTATCA
131 ACTAGCTCTCATCTATCA
* *
32726597 GTGCCGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATATC-AAGCCAATGACATGTCC
1 GTGCCGACGCCATGTCCCAAACATGGTCTTACACTGGCACACACATCAAAGCCAATGACATGTCC
* * * * *
32726659 CAGAGATGGTCTTACACTAG-CTCTCATATCTCGAGGCCAATGCCATGTCCTAGGCATGGTCTTA
66 CAGACATAGTCTTACA-TAGACTCTCATATATCGAGGCCAATGCCATGTCCCAGACATGGTCTTA
32726723 CACTAGCT
130 CACTAGCT
32726731 TTAATATCTC
Statistics
Matches: 113, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
145 72 0.64
146 9 0.08
147 1 0.01
148 31 0.27
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (148 bp):
GTGCCGACGCCATGTCCCAAACATGGTCTTACACTGGCACACACATCAAAGCCAATGACATGTCC
CAGACATAGTCTTACATAGACTCTCATATATCGAGGCCAATGCCATGTCCCAGACATGGTCTTAC
ACTAGCTCTCATCTATCA
Found at i:32732358 original size:27 final size:27
Alignment explanation
Indices: 32732311--32733153 Score: 950
Period size: 27 Copynumber: 31.2 Consensus size: 27
32732301 ATTACCAAAG
*
32732311 TACCCTTCGATTTACAGAATTACCGTTT
1 TACCC-TCGATTTATAGAATTACCGTTT
* *
32732339 TACCCTCGATTTTTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
32732366 TACCCTCGATTTACAGAATTATAGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32732393 TACCCTC-AGTTTACAGAATTACCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
* *
32732420 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32732447 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
32732474 TACCCTCGATTTTTAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32732501 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32732528 TACCCTC-AGTTTACAGAATTACCATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
*
32732555 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
**
32732582 TA-CCTTTAGTTTATAGAATTACCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
* **
32732609 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32732636 TACCCTC-AGTTTACAGAATTACTGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
*
32732663 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
32732690 TACCCTCGATTTGTAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32732717 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32732744 TACCCTC-AGTTTACAGAATTATCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
32732771 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32732798 TACCCTC-AGTTTATAGAATTACCATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
* * *
32732825 TACCCTCGATTTACAGCATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
32732852 TACCCTC-AGTTTACAGAATTACTTTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
*
32732879 TACCTTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32732906 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
**
32732933 TACCCTC-AGTTTATAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
* *
32732960 TACCATCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32732987 TACCCTC-AGTTTACAGAATTACTGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
*
32733014 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
32733041 TACCCTCGATTTGTAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
32733068 TACCCTTGATTTACAGAATTACTGGTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * * *
32733095 TACCCTC-AGTTACAAAATTATCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32733121 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
32733148 TACCCT
1 TACCCT
32733154 TGTGAAATTA
Statistics
Matches: 705, Mismatches: 91, Indels: 39
0.84 0.11 0.05
Matches are distributed among these distances:
26 32 0.05
27 656 0.93
28 17 0.02
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:32733224 original size:54 final size:54
Alignment explanation
Indices: 32733159--32733352 Score: 246
Period size: 54 Copynumber: 3.6 Consensus size: 54
32733149 ACCCTTGTGA
* * * *
32733159 AATTACTGAAATACCCCTGTAGGGTAGAATTTTTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTATCAAAATACCCCTGTAGGGTAG
* * *
32733213 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTATCAAAATACCCCTGTAGGGTAG
* * *
32733267 AATTA-TCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTATCAAAATACCCCTGTAGGGTAG
* * * *
32733321 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTA
32733353 CCATTTTGCC
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 119 0.99
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTATCAAAATACCCCTGTAGGGTAG
Found at i:32733353 original size:27 final size:27
Alignment explanation
Indices: 32733159--32733354 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
32733149 ACCCTTGTGA
* *
32733159 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**** * *
32733186 AATTTTTAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
32733213 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
32733240 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
32733267 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
32733294 AAATATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
32733321 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
32733348 AATTACC
1 AATTACC
32733355 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:32733517 original size:16 final size:16
Alignment explanation
Indices: 32733496--32733526 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32733486 CAAATATGGG
*
32733496 CATGACATTTTGCATA
1 CATGACATGTTGCATA
32733512 CATGACATGTTGCAT
1 CATGACATGTTGCAT
32733527 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:32733591 original size:27 final size:26
Alignment explanation
Indices: 32733553--32733635 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
32733543 CGGAGGAAGC
32733553 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
32733580 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* ** * *
32733606 GTATTTGGTGAATCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
32733633 GTT
1 GTT
32733636 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:32733755 original size:22 final size:22
Alignment explanation
Indices: 32733723--32733781 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
32733713 CCCGTTATTA
*
32733723 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
32733745 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
32733767 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
32733782 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:32733959 original size:25 final size:26
Alignment explanation
Indices: 32733931--32734016 Score: 66
Period size: 27 Copynumber: 3.3 Consensus size: 26
32733921 TGCCACGTAT
* * *
32733931 TCTGTT-AGGTGGGTTTACCACACTA
1 TCTGTTCAGGTGGCTCTACCACAATA
*
32733956 TCTGATTCTGGTGGCTCTACCACAATA
1 TCTG-TTCAGGTGGCTCTACCACAATA
* * ** *
32733983 TCTGTATCTGGTGACTCTGTCACGATA
1 TCTGT-TCAGGTGGCTCTACCACAATA
32734010 TCTGTTC
1 TCTGTTC
32734017 TGGCAGCCAT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
25 4 0.08
26 5 0.10
27 41 0.82
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGTTCAGGTGGCTCTACCACAATA
Found at i:32733976 original size:27 final size:27
Alignment explanation
Indices: 32733946--32734019 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
32733936 TAGGTGGGTT
* *
32733946 TACCACACTATCTG-ATTCTGGTGGCTC
1 TACCACAATATCTGTA-TCTGGTGACTC
32733973 TACCACAATATCTGTATCTGGTGACTC
1 TACCACAATATCTGTATCTGGTGACTC
** *
32734000 TGTCACGATATCTGT-TCTGG
1 TACCACAATATCTGTATCTGG
32734020 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (27 bp):
TACCACAATATCTGTATCTGGTGACTC
Found at i:32734163 original size:24 final size:25
Alignment explanation
Indices: 32734136--32734256 Score: 138
Period size: 25 Copynumber: 4.7 Consensus size: 25
32734126 TTGCATTCAC
32734136 ATTCTGATT-TGATTCTGTCACGTA
1 ATTCTGATTCTGATTCTGTCACGTA
*
32734160 ATTCTGATTCTGATTCTGTTACTAGTA
1 ATTCTGATTCTGATTCTGTCAC--GTA
* * *
32734187 CTGATTCTGATTCTGATTCTGTTA-TTG
1 ---ATTCTGATTCTGATTCTGTCACGTA
*
32734214 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACGTA
32734239 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
32734257 ATTCTGTTAC
Statistics
Matches: 84, Mismatches: 6, Indels: 13
0.82 0.06 0.13
Matches are distributed among these distances:
24 29 0.35
25 30 0.36
27 4 0.05
30 21 0.25
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACGTA
Found at i:32734171 original size:6 final size:6
Alignment explanation
Indices: 32734160--32734315 Score: 128
Period size: 6 Copynumber: 25.8 Consensus size: 6
32734150 CTGTCACGTA
*
32734160 ATTCTG ATTCTG ATTCTG -TTACT- AGTACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG A-TTCTG ATTCTG ATTCTG ATTCTG
* * *
32734208 -TTATTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
32734257 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTTTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
*
32734305 CTTCTG ATTCT
1 ATTCTG ATTCT
32734316 CATTTTGGTT
Statistics
Matches: 121, Mismatches: 14, Indels: 30
0.73 0.08 0.18
Matches are distributed among these distances:
5 10 0.08
6 100 0.83
7 9 0.07
8 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:32734322 original size:30 final size:30
Alignment explanation
Indices: 32734160--32734315 Score: 191
Period size: 30 Copynumber: 5.4 Consensus size: 30
32734150 CTGTCACGTA
* *
32734160 ATTCTGATTCTGATTCTGTTACTAGTACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
32734190 ATTCTGATTCTGATTCTG-T--T-A-T-TG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
32734214 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
32734245 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
32734275 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
32734305 CTTCTGATTCT
1 ATTCTGATTCT
32734316 CATTTTGGTT
Statistics
Matches: 110, Mismatches: 7, Indels: 18
0.81 0.05 0.13
Matches are distributed among these distances:
24 20 0.18
27 1 0.01
28 1 0.01
29 3 0.03
30 62 0.56
31 23 0.21
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:32734333 original size:30 final size:30
Alignment explanation
Indices: 32734215--32734334 Score: 100
Period size: 30 Copynumber: 4.0 Consensus size: 30
32734205 CTGTTATTGA
* * * *
32734215 TTCTGATTCTGATTCTGTCACCTAATTCTGA
1 TTCTGATTCTCATTTTGTTACC-AATTCTGC
* * * *
32734246 TTCTGATTCTGATTCTGTTACTAATAT-TGA
1 TTCTGATTCTCATTTTGTTACCAAT-TCTGC
* **
32734276 TTCTGATTCTGATTTTGTTACTGATTCTGC
1 TTCTGATTCTCATTTTGTTACCAATTCTGC
32734306 TTCTGATTCTCATTTTGGTT-CCAATTCTG
1 TTCTGATTCTCATTTT-GTTACCAATTCTG
32734335 ATAATGTTTC
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
29 1 0.01
30 53 0.68
31 24 0.31
ACGTcount: A:0.17, C:0.18, G:0.14, T:0.50
Consensus pattern (30 bp):
TTCTGATTCTCATTTTGTTACCAATTCTGC
Found at i:32736330 original size:27 final size:25
Alignment explanation
Indices: 32736300--32736373 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 25
32736290 TACTGAAATG
32736300 CCCTCGACTTGTAAAATTACCAAAGTA
1 CCCTCGA-TT-TAAAATTACCAAAGTA
****
32736327 CCCTCGATTTACAAATTACCGTTTTA
1 CCCTCGATTTA-AAATTACCAAAGTA
32736353 CCCTCGATTTTTAAAATTACC
1 CCCTCGA--TTTAAAATTACC
32736374 GTTTTACCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 2 0.05
26 19 0.47
27 15 0.38
28 4 0.10
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (25 bp):
CCCTCGATTTAAAATTACCAAAGTA
Found at i:32736377 original size:27 final size:27
Alignment explanation
Indices: 32736325--32737332 Score: 1225
Period size: 27 Copynumber: 37.4 Consensus size: 27
32736315 ATTACCAAAG
*
32736325 TACCCTCGATTTACA-AATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32736351 TACCCTCGATTTTTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32736378 TACCCTCGA-TTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32736404 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32736431 TACCCTCGATTTTTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
32736458 TACCATCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32736485 TACCCTC-AGTTTACAGAATTACCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
32736512 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32736539 TACCCTC-AGTTTACAGAATTACCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
*
32736566 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
**
32736593 TACCCTC-AGTTTATAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
32736620 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
32736647 TACCCTCGATTTGTAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32736674 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32736701 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
32736728 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32736755 TACCCTC-AGTTTACAGAATTACCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
* * *
32736782 TACCCTTGATTTACAGCATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
**
32736809 TACCCTC-AGTTTATAGAATTACTTTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
32736836 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
**
32736863 TACCCTC-AGTTTATAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
* * *
32736890 TACCATCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32736917 TACCCTC-AGTTTACAGAATTACCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
*
32736944 TACCCTC-AGTTTATAGAATTATCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
*
32736971 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32736998 TACCCTC-AGTTTACAGAATTACCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
* * *
32737025 TAACCTCGATTTACAGCATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
32737052 TACCCTCAATTTATAGAATTACTTTTT
1 TACCCTCGATTTATAGAATTACCGTTT
32737079 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
32737106 TACCCTCGATTTGTAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
32737133 TACCCTC-AGTTTACAAAATTATCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
* *
32737160 TACCCTC-AGTTTACAGAATTACTGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
32737187 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
32737214 TACCCTCGATTTGTAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
32737241 TACCCTTGATTTACAGAATTACTGGTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
32737268 TACCCTC-AGTTTACAAAATTATCGTTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
*
32737295 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
32737322 TACCCTTGATT
1 TACCCTCGATT
32737333 GTGAAATTAC
Statistics
Matches: 864, Mismatches: 96, Indels: 43
0.86 0.10 0.04
Matches are distributed among these distances:
26 45 0.05
27 809 0.94
28 10 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:32737405 original size:54 final size:54
Alignment explanation
Indices: 32737337--32737532 Score: 259
Period size: 54 Copynumber: 3.6 Consensus size: 54
32737327 TTGATTGTGA
* ** *
32737337 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
32737391 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
32737445 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGTTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
32737499 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
32737533 ATTTTTGCCC
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 122 0.99
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:32737440 original size:81 final size:81
Alignment explanation
Indices: 32737345--32737530 Score: 255
Period size: 81 Copynumber: 2.3 Consensus size: 81
32737335 GAAATTACTG
* * * *
32737345 AAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTA
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
32737410 TAGGATAGAATTACCA
66 TAGGATAGAATTACCA
* * *
32737426 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
* *
32737491 TAGGTTAGAATTACCG
66 TAGGATAGAATTACCA
* * * *
32737507 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAGAATTA
32737531 CCATTTTTGC
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
TAGGATAGAATTACCA
Found at i:32737532 original size:27 final size:27
Alignment explanation
Indices: 32737337--32737532 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
32737327 TTGATTGTGA
* *
32737337 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * *
32737364 AATTTTCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
32737391 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
32737418 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
32737445 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
32737472 AAATACCGAAATACCCCTGTAGGTTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
32737499 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
32737526 AATTACC
1 AATTACC
32737533 ATTTTTGCCC
Statistics
Matches: 142, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:32737696 original size:16 final size:16
Alignment explanation
Indices: 32737675--32737705 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32737665 CAAATATGGG
*
32737675 CATGACATTTTGCATA
1 CATGACATGTTGCATA
32737691 CATGACATGTTGCAT
1 CATGACATGTTGCAT
32737706 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:32737770 original size:27 final size:26
Alignment explanation
Indices: 32737732--32737814 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
32737722 CGGAGGAAGC
32737732 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
32737759 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * * *
32737785 ATATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
32737812 GTT
1 GTT
32737815 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 9 0.18
27 40 0.82
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:32737934 original size:22 final size:22
Alignment explanation
Indices: 32737902--32737960 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
32737892 CCCGTTATTA
*
32737902 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
32737924 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
32737946 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
32737961 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:32738157 original size:27 final size:26
Alignment explanation
Indices: 32738127--32738198 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
32738117 GGTGGGTTTA
* *
32738127 CCACACTATCTGATTCTGGTGGCTCTG
1 CCACAATATCTG-TTCTGGTGACTCTG
32738154 CCACAATATCTGTATCTGGTGACTCTG
1 CCACAATATCTGT-TCTGGTGACTCTG
* **
32738181 TCACGTTATCTGTTCTGG
1 CCACAATATCTGTTCTGG
32738199 CAGCCATGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.15
27 33 0.85
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (26 bp):
CCACAATATCTGTTCTGGTGACTCTG
Found at i:32738325 original size:6 final size:6
Alignment explanation
Indices: 32738316--32738496 Score: 133
Period size: 6 Copynumber: 29.8 Consensus size: 6
32738306 TTGCATTCAC
* * *
32738316 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
32738365 -TTACTA ATACTG ATTCTG ATTTTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
32738413 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTAATA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
32738462 ATTCTG ATTCTG ATTCTG -TTACTG ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCT
32738497 CATTTTGGTT
Statistics
Matches: 138, Mismatches: 21, Indels: 32
0.72 0.11 0.17
Matches are distributed among these distances:
5 11 0.08
6 114 0.83
7 10 0.07
8 3 0.02
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:32738434 original size:25 final size:24
Alignment explanation
Indices: 32738377--32738443 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 24
32738367 ACTAATACTG
* * *
32738377 ATTCTGATTTTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTGTCACTA
32738401 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCA-CTA
32738426 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
32738444 ATTCTGTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 19 0.49
25 20 0.51
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTGTCACTA
Found at i:32738458 original size:85 final size:85
Alignment explanation
Indices: 32738316--32738496 Score: 308
Period size: 85 Copynumber: 2.1 Consensus size: 85
32738306 TTGCATTCAC
* *
32738316 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTAATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTAATAATACTGATTC
*
32738381 TGATTTTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* *
32738401 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTAATAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTAATAATACTGATTC
32738466 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
*
32738486 ATTTTGATTCT
1 ATTCTGATTCT
32738497 CATTTTGGTT
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTAATAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:32739441 original size:43 final size:44
Alignment explanation
Indices: 32739387--32739518 Score: 189
Period size: 43 Copynumber: 3.1 Consensus size: 44
32739377 ATCGAGATGG
* *
32739387 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TAT
1 GATTACGTGTAAGACCAAGTCTGGGACATTGGCATTGTATATAT
*
32739430 GATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGT-TATAT
1 GATTACGTGTAAGACCAAGTCTGGGACATTGGCATTGTATATAT
* * *
32739473 GTTTTCGTGTAAGACCACGTCTGGGACATTGGCATTG-ATATAT
1 GATTACGTGTAAGACCAAGTCTGGGACATTGGCATTGTATATAT
32739516 GAT
1 GAT
32739519 AACATGCTAG
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
42 1 0.01
43 78 0.99
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (44 bp):
GATTACGTGTAAGACCAAGTCTGGGACATTGGCATTGTATATAT
Found at i:32740090 original size:16 final size:16
Alignment explanation
Indices: 32740069--32740100 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32740059 ATGATAATGA
32740069 TGTATAGAATATGGTC
1 TGTATAGAATATGGTC
32740085 TGTATAGAATATGGTC
1 TGTATAGAATATGGTC
32740101 ATTTTGGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (16 bp):
TGTATAGAATATGGTC
Found at i:32741412 original size:8 final size:8
Alignment explanation
Indices: 32741399--32741437 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
32741389 ATGTTATAAT
32741399 TATATGAG
1 TATATGAG
32741407 TATATGAG
1 TATATGAG
*
32741415 T-TGTGA-
1 TATATGAG
32741421 TATATGAG
1 TATATGAG
32741429 TATATGAG
1 TATATGAG
32741437 T
1 T
32741438 TGTGATGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 1 0.04
7 8 0.30
8 18 0.67
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (8 bp):
TATATGAG
Found at i:32741426 original size:22 final size:22
Alignment explanation
Indices: 32741399--32741443 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
32741389 ATGTTATAAT
32741399 TATATGAGTATATGAGTTGTGA
1 TATATGAGTATATGAGTTGTGA
32741421 TATATGAGTATATGAGTTGTGA
1 TATATGAGTATATGAGTTGTGA
32741443 T
1 T
32741444 GTTTGGTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (22 bp):
TATATGAGTATATGAGTTGTGA
Found at i:32745037 original size:30 final size:31
Alignment explanation
Indices: 32744981--32745043 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
32744971 CCTTTTCATA
32744981 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
32745012 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
32745042 TT
1 TT
32745044 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:32745281 original size:23 final size:24
Alignment explanation
Indices: 32745250--32745375 Score: 206
Period size: 23 Copynumber: 5.4 Consensus size: 24
32745240 CTGGAGGCCT
32745250 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
32745274 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
32745298 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
32745321 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
32745345 AGCCC-TTTAATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
32745367 AGCCCTTTT
1 AGCCCTTTT
32745376 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 2, Indels: 7
0.92 0.02 0.07
Matches are distributed among these distances:
22 12 0.12
23 53 0.55
24 32 0.33
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:32745336 original size:47 final size:47
Alignment explanation
Indices: 32745257--32745376 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
32745247 CCTAGCCTCT
*
32745257 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
32745303 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
32745350 TTTAATAACT-GGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
32745377 CACTTCCTCC
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
46 33 0.46
47 39 0.54
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:32745447 original size:9 final size:9
Alignment explanation
Indices: 32745433--32745489 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32745423 ATCTCATGTG
32745433 CATATCATA
1 CATATCATA
*
32745442 CATATCATGTG
1 CATATCA--TA
32745453 CATATCATA
1 CATATCATA
* *
32745462 CATGTCATGTG
1 CATATCA--TA
32745473 CATATCATA
1 CATATCATA
32745482 CATATCAT
1 CATATCAT
32745490 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:32745449 original size:20 final size:20
Alignment explanation
Indices: 32745421--32745491 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
32745411 GCATTTATGA
*
32745421 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32745441 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
32745461 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32745481 ACATATCATGT
1 ACATATCATGT
32745492 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:32745456 original size:11 final size:11
Alignment explanation
Indices: 32745426--32745480 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
32745416 TATGAACATC
32745426 TCATGTGCATA
1 TCATGTGCATA
*
32745437 TCA--TACATA
1 TCATGTGCATA
32745446 TCATGTGCATA
1 TCATGTGCATA
* *
32745457 TCA--TACATG
1 TCATGTGCATA
32745466 TCATGTGCATA
1 TCATGTGCATA
32745477 TCAT
1 TCAT
32745481 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:32745566 original size:24 final size:24
Alignment explanation
Indices: 32745528--32745574 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
32745518 ATATATAAAC
* *
32745528 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAATGGTCATTTTA
32745552 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
32745575 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:32761838 original size:40 final size:40
Alignment explanation
Indices: 32761779--32761947 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
32761769 CGGGACTTTA
* * *
32761779 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
32761819 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
32761859 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
32761899 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
32761939 CCCGGATAT
1 CCCGGATAT
32761948 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:32769321 original size:29 final size:27
Alignment explanation
Indices: 32769287--32769389 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
32769277 TACTCAATCA
*
32769287 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
32769316 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
* *
32769345 TGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
32769374 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
32769390 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:32775132 original size:14 final size:14
Alignment explanation
Indices: 32775113--32775140 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32775103 TATTTTGAAA
32775113 TTATTTATTTATTT
1 TTATTTATTTATTT
32775127 TTATTTATTTATTT
1 TTATTTATTTATTT
32775141 CCTTTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTATTTATTTATTT
Found at i:32775146 original size:18 final size:18
Alignment explanation
Indices: 32775113--32775147 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32775103 TATTTTGAAA
*
32775113 TTATTTATTTATTTTTAT
1 TTATTTATTTACTTTTAT
*
32775131 TTATTTATTTCCTTTTA
1 TTATTTATTTACTTTTA
32775148 ATACTATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (18 bp):
TTATTTATTTACTTTTAT
Found at i:32782652 original size:24 final size:24
Alignment explanation
Indices: 32782620--32782706 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
32782610 AATCTCAAAT
32782620 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
32782644 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
32782668 GCACTATGTGTGCGAATTACTATG
1 GCACTATGTGTGCGATTTACTATG
32782692 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
32782707 ACATAATAAG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:32782719 original size:24 final size:25
Alignment explanation
Indices: 32782620--32782733 Score: 94
Period size: 24 Copynumber: 4.8 Consensus size: 25
32782610 AATCTCAAAT
** * *
32782620 GCACTATGTGTGCG-ATTTACTATG
1 GCACTATGTGTGCGAACATAATATA
** * *
32782644 GCACTATGTGTGCG-ATTTACTATG
1 GCACTATGTGTGCGAACATAATATA
* * *
32782668 GCACTATGTGTGCGAA-TTACTATG
1 GCACTATGTGTGCGAACATAATATA
32782692 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGAACATAATATA
32782716 GCACTATGTGTGC-AACAT
1 GCACTATGTGTGCGAACAT
32782734 TCGGTTGTTG
Statistics
Matches: 85, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
23 5 0.06
24 75 0.88
25 5 0.06
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (25 bp):
GCACTATGTGTGCGAACATAATATA
Found at i:32782720 original size:48 final size:48
Alignment explanation
Indices: 32782620--32782728 Score: 157
Period size: 48 Copynumber: 2.3 Consensus size: 48
32782610 AATCTCAAAT
* ** * *
32782620 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGAATTACTATGGCACTATGTGTGCGACATAATATA
32782668 GCACTATGTGTGCGAATTACTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGAATTACTATGGCACTATGTGTGCG-ACATAATATA
32782716 GCACTATGTGTGC
1 GCACTATGTGTGC
32782729 AACATTCGGT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 50 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCGAATTACTATGGCACTATGTGTGCGACATAATATA
Found at i:32798466 original size:21 final size:21
Alignment explanation
Indices: 32798440--32798481 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
32798430 CTATCCTATG
32798440 CTTAGGTGAGCATATTTTATA
1 CTTAGGTGAGCATATTTTATA
32798461 CTTAGGTGAGCATATTTTATA
1 CTTAGGTGAGCATATTTTATA
32798482 TTTTATACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (21 bp):
CTTAGGTGAGCATATTTTATA
Found at i:32802483 original size:18 final size:18
Alignment explanation
Indices: 32802456--32802496 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
32802446 AGTTCAGCAC
*
32802456 TTTTTAATGTTGTTTACA
1 TTTTTAATGTTCTTTACA
*
32802474 TTTTTTATGTTCTTTACA
1 TTTTTAATGTTCTTTACA
32802492 TTTTT
1 TTTTT
32802497 GAAATCCTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.68
Consensus pattern (18 bp):
TTTTTAATGTTCTTTACA
Found at i:32814889 original size:48 final size:48
Alignment explanation
Indices: 32814817--32815103 Score: 319
Period size: 48 Copynumber: 6.0 Consensus size: 48
32814807 GAGGATGAAT
* *
32814817 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
* * * * *
32814865 GGCCGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
* * * * *
32814913 TACCGATGCCATGTCCTAGACATGGTCTTACGCTAGCACACACATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
* *
32814961 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-TACAT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT-CAA
* * * * * *
32815009 TGTCAATGCCATGTTCCAAACATGGTCTTACAC-AGGCTCTCATATC-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTA-GCTCACATATCAA
* * *
32815056 TGGCTGATGCCATGTCCCAGACATGATCTTACACTAGCACACATATCA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
32815104 CCCAAAGGTC
Statistics
Matches: 197, Mismatches: 36, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
47 3 0.02
48 192 0.97
49 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
Found at i:32815078 original size:144 final size:144
Alignment explanation
Indices: 32814817--32815103 Score: 366
Period size: 144 Copynumber: 2.0 Consensus size: 144
32814807 GAGGATGAAT
*
32814817 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCTC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTCAAGGCCAATGCCATGTCTC
* * * * * *
32814882 AGACATGGTCTTACACTAGCTCTCGTCTCAATACCGATGCCATGTCCTAGACATGGTCTTACGCT
66 AAACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTCCCAGACATGATCTTACACT
32814947 AGCACACACATCAA
131 AGCACACACATCAA
* * ** *
32814961 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-TACATTGTCAATGCCATGT-T
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGT-CAAGGCCAATGCCATGTCT
* * *
32815024 CCAAACATGGTCTTACAC-AGGCTCTCATATC-GTGGCTGATGCCATGTCCCAGACATGATCTTA
65 -CAAACATGGTCTTACACTA-GCTCTCATATCAAT-ACCGATGCCATGTCCCAGACATGATCTTA
*
32815087 CACTAGCACACATATCA
127 CACTAGCACACACATCA
32815104 CCCAAAGGTC
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
143 4 0.03
144 119 0.97
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (144 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTCAAGGCCAATGCCATGTCTC
AAACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTCCCAGACATGATCTTACACT
AGCACACACATCAA
Found at i:32825505 original size:40 final size:40
Alignment explanation
Indices: 32825460--32825589 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
32825450 CGGAATACAA
32825460 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
32825500 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
32825540 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
32825580 CCGGATATAA
1 CCGGATATAA
32825590 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:32828631 original size:13 final size:13
Alignment explanation
Indices: 32828613--32828637 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32828603 ATGGCCTATA
32828613 CAAAATGAGTATG
1 CAAAATGAGTATG
32828626 CAAAATGAGTAT
1 CAAAATGAGTAT
32828638 CACATCTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.20, T:0.24
Consensus pattern (13 bp):
CAAAATGAGTATG
Found at i:32831383 original size:79 final size:82
Alignment explanation
Indices: 32831243--32831427 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
32831233 TCGAATGATG
* * *
32831243 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
32831307 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
32831323 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
32831385 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
32831403 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32831428 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:32831435 original size:40 final size:40
Alignment explanation
Indices: 32831244--32831435 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
32831234 CGAATGATGT
* * * * *
32831244 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
32831284 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
32831324 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
32831363 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
32831403 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
32831436 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:32831458 original size:79 final size:79
Alignment explanation
Indices: 32831243--32831460 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
32831233 TCGAATGATG
* * * * ** *
32831243 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
32831306 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
32831323 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
32831388 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
32831403 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
32831461 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:32833364 original size:574 final size:576
Alignment explanation
Indices: 32832226--32833376 Score: 2225
Period size: 574 Copynumber: 2.0 Consensus size: 576
32832216 GGTATTAAAT
32832226 AGTGAATAAATTATGTAAATGAACTTTGATGAATCTACTTTCATATGGAAGAAACGAAACGGTCA
1 AGTGAATAAATTATGTAAATGAACTTTGATGAATCTACTTTCATATGGAAGAAACGAAACGGTCA
32832291 TATGAGTTATATGTTAAGAGATATTAAAGTTCTCGTGAAACAGGGCCAGAACGGTTTCTGGATCC
66 TATGAGTTATATGTTAAGAGATATTAAAGTTCTCGTGAAACAGGGCCAGAACGGTTTCTGGATCC
*
32832356 CCTGTTCCGACTTTGGAAATTCATTGTAAATTAACCAGAGATAATTAGGAGTCATTCCATATATG
131 CCTGTTCCGACTTTGGAAATTCATTGTAAATTAACCAGAGATAATTAGGAGTCATGCCATATATG
32832421 TATAGATTACTCTCTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTAAAGCCCTGTACA
196 TATAGATTACTCTCTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTAAAGCCCTGTACA
*
32832486 AGGAGATATTCAATTTGTAACGCACGAAGGTCAGTGTAGTCGAACCCTGGAATAGGGGAGACTTT
261 AGGAGATATTCAATTCGTAACGCACGAAGGTCAGTGTAGTCGAACCCTGGAATAGGGGAGACTTT
32832551 AACTAATAAACTGTACTAATTGGCTCGACCAAAAATTCTAGAAAAAAATATGTAGATGGACATAT
326 AACTAATAAACTGTACTAATTGGCTCGACCAAAAATTCTAGAAAAAAATATGTAGATGGACATAT
*
32832616 GAGTCTAGTTTCAGGGAAAAATTACGAAACAAATTTTTGAGCTTTGAAACTCAAGATATGATTTT
391 GAGTCTAGTTTCAGGGAAAAATTACGAAACAAATTTTCGAGCTTTGAAACTCAAGATATGATTTT
32832681 TAAGGCGACAGTGACGCAGTGACCAGCTAGTCTGGAAATTTCTAAATGGACTGTGAAAATAGTTA
456 TAAGGCGACAGTGACGCAGTGACCAGCTAGTCTGGAAATTTCTAAATGGACTGTGAAAATAGTTA
* *
32832746 AGTCTGTGTGCACCTTGTGTCCGATTCCGGTAATGGAGTCGGGTACCGGGTGTTAC
521 AGTCTGTGTGCACCTTGTGTCCGATTCCGGTAACGGACTCGGGTACCGGGTGTTAC
32832802 AGTGAATAAATTATGTAAATGAACTTTGATGAATCTACTTTCATATGGAAGAAACGAAACGGTCA
1 AGTGAATAAATTATGTAAATGAACTTTGATGAATCTACTTTCATATGGAAGAAACGAAACGGTCA
32832867 TATGAGTTATATGTTAAGAGATATTAAAGTTCTCGTGAAACAGGGCCAGAACGGTTTCTGGATCC
66 TATGAGTTATATGTTAAGAGATATTAAAGTTCTCGTGAAACAGGGCCAGAACGGTTTCTGGATCC
32832932 CCTGTTCCGACTTTGGAAATTCATTGTAAATTAACCAGAGATAATTAGGAGTCATGCCATATATG
131 CCTGTTCCGACTTTGGAAATTCATTGTAAATTAACCAGAGATAATTAGGAGTCATGCCATATATG
32832997 TATAGATT-CTCTCTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTAAAGCCCTGTACA
196 TATAGATTACTCTCTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTAAAGCCCTGTACA
32833061 AGGAGATATTCAATTCGTAACGCACGAAGGTCAGTGTAGTCGAACCCTGGAATAGGGGAGACTTT
261 AGGAGATATTCAATTCGTAACGCACGAAGGTCAGTGTAGTCGAACCCTGGAATAGGGGAGACTTT
32833126 AACTAATAAACTGTACTAATTGGCT-GACCAAAAATTCTAGAAAAAAATATGTAGATGGACATAT
326 AACTAATAAACTGTACTAATTGGCTCGACCAAAAATTCTAGAAAAAAATATGTAGATGGACATAT
32833190 GAGTCTAGTTTCAGGGAAAAATTACGAAACAAATTTTCGAGCTTTGAAACTCAAGATATGATTTT
391 GAGTCTAGTTTCAGGGAAAAATTACGAAACAAATTTTCGAGCTTTGAAACTCAAGATATGATTTT
*
32833255 TAAGGCGACAGTGATGCAGTGACCAGCTAGTCTGGAAATTTCTAAATGGACTGTGAAAATAGTTA
456 TAAGGCGACAGTGACGCAGTGACCAGCTAGTCTGGAAATTTCTAAATGGACTGTGAAAATAGTTA
*
32833320 AGTCTGTGTGCACCTTGTGTCCGATTCCGGTAACGGACTCGGGTACGGGGTGTTAC
521 AGTCTGTGTGCACCTTGTGTCCGATTCCGGTAACGGACTCGGGTACCGGGTGTTAC
32833376 A
1 A
32833377 ATTTTATTGG
Statistics
Matches: 568, Mismatches: 7, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
574 221 0.39
575 145 0.26
576 202 0.36
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (576 bp):
AGTGAATAAATTATGTAAATGAACTTTGATGAATCTACTTTCATATGGAAGAAACGAAACGGTCA
TATGAGTTATATGTTAAGAGATATTAAAGTTCTCGTGAAACAGGGCCAGAACGGTTTCTGGATCC
CCTGTTCCGACTTTGGAAATTCATTGTAAATTAACCAGAGATAATTAGGAGTCATGCCATATATG
TATAGATTACTCTCTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTAAAGCCCTGTACA
AGGAGATATTCAATTCGTAACGCACGAAGGTCAGTGTAGTCGAACCCTGGAATAGGGGAGACTTT
AACTAATAAACTGTACTAATTGGCTCGACCAAAAATTCTAGAAAAAAATATGTAGATGGACATAT
GAGTCTAGTTTCAGGGAAAAATTACGAAACAAATTTTCGAGCTTTGAAACTCAAGATATGATTTT
TAAGGCGACAGTGACGCAGTGACCAGCTAGTCTGGAAATTTCTAAATGGACTGTGAAAATAGTTA
AGTCTGTGTGCACCTTGTGTCCGATTCCGGTAACGGACTCGGGTACCGGGTGTTAC
Found at i:32840010 original size:79 final size:82
Alignment explanation
Indices: 32839870--32840054 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
32839860 TCGAATGATG
* * *
32839870 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
32839934 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
32839950 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
32840012 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
32840030 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32840055 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:32840062 original size:40 final size:40
Alignment explanation
Indices: 32839871--32840062 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
32839861 CGAATGATGT
* * * * *
32839871 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
32839911 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
32839951 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
32839990 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
32840030 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
32840063 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:32840085 original size:79 final size:79
Alignment explanation
Indices: 32839870--32840087 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
32839860 TCGAATGATG
* * * * ** *
32839870 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
32839933 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
32839950 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
32840015 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
32840030 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
32840088 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:32843059 original size:49 final size:49
Alignment explanation
Indices: 32842998--32843300 Score: 417
Period size: 47 Copynumber: 6.3 Consensus size: 49
32842988 ATGTATGAGA
*
32842998 TATATATATGTGATAAGGCCTAATGG-CAGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCGAATGGCCA-ATGTGATGAATGTGAAAGTG
* *
32843047 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* ** *
32843096 TGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTG-AAG-G
1 TATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
32843143 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
32843192 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *
32843239 --TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
32843286 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
32843301 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 12, Indels: 12
0.91 0.05 0.05
Matches are distributed among these distances:
47 139 0.59
48 7 0.03
49 90 0.38
50 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:32843178 original size:22 final size:22
Alignment explanation
Indices: 32843150--32843225 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
32843140 AGGTGTATAT
32843150 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
32843172 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
32843196 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
32843219 ATGTGAT
1 ATGTGAT
32843226 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:32845544 original size:25 final size:25
Alignment explanation
Indices: 32845515--32845562 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
32845505 TGTCGAGGCC
32845515 GATGCCATGTCCCAAACATGGTCCT
1 GATGCCATGTCCCAAACATGGTCCT
32845540 GATGCCATGTCCCAAACATGGTC
1 GATGCCATGTCCCAAACATGGTC
32845563 TTACACTGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (25 bp):
GATGCCATGTCCCAAACATGGTCCT
Found at i:32845588 original size:73 final size:73
Alignment explanation
Indices: 32845465--32845610 Score: 193
Period size: 73 Copynumber: 2.0 Consensus size: 73
32845455 GGATGAATTG
* * ** * *
32845465 CTGATGCCATGTTCCAAACATGGTTTTACGTTGGCTCACATGTCGAGGCCGATGCCATGTCCCAA
1 CTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGACATGTCCCAA
32845530 ACATGGTC
66 ACATGGTC
* * * * *
32845538 CTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGTGGCCGATGACATGTCCTAG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGACATGTCCCAA
32845603 ACATGGTC
66 ACATGGTC
32845611 TTACACTAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
73 62 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (73 bp):
CTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGACATGTCCCAA
ACATGGTC
Done.