Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 111 of 410
Found at i:32850963 original size:39 final size:39
Alignment explanation
Indices: 32850904--32851055 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
32850894 AAATGTTCGA
* *
32850904 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
32850943 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
32850982 ATGATATCC-GGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
32851020 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
32851056 GGTTACCATA
Statistics
Matches: 103, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 37 0.36
39 49 0.48
40 17 0.17
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:32851000 original size:77 final size:79
Alignment explanation
Indices: 32850905--32851085 Score: 249
Period size: 77 Copynumber: 2.3 Consensus size: 79
32850895 AATGTTCGAG
32850905 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
32850969 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* * * *
32850983 TGATATCC-GGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
* *
32851047 ATTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
32851061 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
32851086 TGTTTGAACG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
77 42 0.47
78 34 0.38
79 6 0.07
80 8 0.09
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:32851071 original size:40 final size:39
Alignment explanation
Indices: 32850905--32851085 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
32850895 AATGTTCGAG
* * *
32850905 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
32850944 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
32850983 TGATATCC-GGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
32851021 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
32851061 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
32851086 TGTTTGAACG
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
38 37 0.30
39 48 0.38
40 40 0.32
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:32868829 original size:21 final size:22
Alignment explanation
Indices: 32868789--32868830 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
32868779 TTATGATTGA
32868789 TGAATAATAAATCAATTAAATT
1 TGAATAATAAATCAATTAAATT
* *
32868811 TGAATACTCAATC-ATTAAAT
1 TGAATAATAAATCAATTAAAT
32868831 CCATGGTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.36
Consensus pattern (22 bp):
TGAATAATAAATCAATTAAATT
Found at i:32871558 original size:14 final size:14
Alignment explanation
Indices: 32871539--32871565 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32871529 TGACTAAATC
32871539 AAATTTTATTCTAT
1 AAATTTTATTCTAT
32871553 AAATTTTATTCTA
1 AAATTTTATTCTA
32871566 CTATGTACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (14 bp):
AAATTTTATTCTAT
Found at i:32878424 original size:31 final size:31
Alignment explanation
Indices: 32878383--32878455 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
32878373 TTGCTCTCTT
*
32878383 ACATGGAGCTCGTAGCTATAACAGCTCACCA
1 ACATGAAGCTCGTAGCTATAACAGCTCACCA
*
32878414 ACATGAAGCTCGTAGCTATAACAGCTCACCT
1 ACATGAAGCTCGTAGCTATAACAGCTCACCA
*
32878445 CCATGAAGCTC
1 ACATGAAGCTC
32878456 ATATGTATTC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.21
Consensus pattern (31 bp):
ACATGAAGCTCGTAGCTATAACAGCTCACCA
Found at i:32878440 original size:90 final size:90
Alignment explanation
Indices: 32878346--32878574 Score: 268
Period size: 90 Copynumber: 2.5 Consensus size: 90
32878336 GCCAGCATGG
* * * ** *
32878346 AGCTCGCCTACATAGAGCTCGCATGCATTGCTCTCTTACATGGAGCTCGTAGCTATAACAGCTCA
1 AGCTCACCTACATAGAGCTCGAATGTATTGCTCTCTTACATGGAGCTCACAACTATAACAGCTCA
**
32878411 CCAACATGAAGCTCGTAGCTATAAC
66 CCAACATGAAGCTCACAGCTATAAC
* * * * *
32878436 AGCTCACCTCCAT-GAAGCTC-ATATGTATTCCTCGT-TTACATGGAGCTTACAACTATCATAGC
1 AGCTCACCTACATAG-AGCTCGA-ATGTATTGCTC-TCTTACATGGAGCTCACAACTATAACAGC
32878498 TCACCAACATGAAGCTCACAGCTATAAC
63 TCACCAACATGAAGCTCACAGCTATAAC
*
32878526 AGCTCACCTACATAGAGCTCGAATGTATTGCT-TGCCTACATGGAGCTCA
1 AGCTCACCTACATAGAGCTCGAATGTATTGCTCT-CTTACATGGAGCTCA
32878575 TACTTCACCA
Statistics
Matches: 115, Mismatches: 17, Indels: 14
0.79 0.12 0.10
Matches are distributed among these distances:
88 1 0.01
89 1 0.01
90 110 0.96
91 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (90 bp):
AGCTCACCTACATAGAGCTCGAATGTATTGCTCTCTTACATGGAGCTCACAACTATAACAGCTCA
CCAACATGAAGCTCACAGCTATAAC
Found at i:32878508 original size:31 final size:31
Alignment explanation
Indices: 32878473--32878545 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 31
32878463 TTCCTCGTTT
* * *
32878473 ACATGGAGCTTACAACTATCATAGCTCACCA
1 ACATGGAGCTCACAACTATAACAGCTCACCA
* * *
32878504 ACATGAAGCTCACAGCTATAACAGCTCACCT
1 ACATGGAGCTCACAACTATAACAGCTCACCA
*
32878535 ACATAGAGCTC
1 ACATGGAGCTC
32878546 GAATGTATTG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.36, C:0.30, G:0.14, T:0.21
Consensus pattern (31 bp):
ACATGGAGCTCACAACTATAACAGCTCACCA
Found at i:32878867 original size:29 final size:29
Alignment explanation
Indices: 32878824--32878924 Score: 139
Period size: 29 Copynumber: 3.5 Consensus size: 29
32878814 ACGATAAGCA
32878824 AAAATCAAGGAACCACTTCAACAGAAAAG
1 AAAATCAAGGAACCACTTCAACAGAAAAG
* * *
32878853 GAAATCAATGAACCACTTCAACAAAAAAG
1 AAAATCAAGGAACCACTTCAACAGAAAAG
* * * *
32878882 TAAATCAAGGAACCACTTTAATAGAAGAG
1 AAAATCAAGGAACCACTTCAACAGAAAAG
32878911 AAAATCAAGGAACC
1 AAAATCAAGGAACC
32878925 CCTACACGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.53, C:0.19, G:0.14, T:0.14
Consensus pattern (29 bp):
AAAATCAAGGAACCACTTCAACAGAAAAG
Found at i:32881547 original size:18 final size:19
Alignment explanation
Indices: 32881506--32881547 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
32881496 AGGAATTAAA
*
32881506 TAAAAAATATATAATGATAG
1 TAAAAAATATATAAT-ATAC
*
32881526 TAAAAAATATATGAT-TAC
1 TAAAAAATATATAATATAC
32881544 TAAA
1 TAAA
32881548 TATTAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
20 14 0.70
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (19 bp):
TAAAAAATATATAATATAC
Found at i:32884561 original size:90 final size:90
Alignment explanation
Indices: 32884462--32884645 Score: 244
Period size: 90 Copynumber: 2.0 Consensus size: 90
32884452 ATCAGGGATT
* * * * *
32884462 TGGCTTCGGCATTAATAAGTGATTTCGTATAAGACCATATTTGGAATATGGCATCGATATG-AGG
1 TGGCGTCGGCACTAATAAGAGACTTCGTATAAGACCATATTTGGAATATGACATCGATATGTA-G
* *
32884526 TCCCGTATAAGACCATGTCTGAGACA
65 TACCATATAAGACCATGTCTGAGACA
** *
32884552 TGGCGTCGGCACTAATTCGAGACTTCGTATAAGACCATATTTGGAATATGACATCGATGTGTAGT
1 TGGCGTCGGCACTAATAAGAGACTTCGTATAAGACCATATTTGGAATATGACATCGATATGTAGT
* *
32884617 ACCATGTAAGACCATGTCTGGGACA
66 ACCATATAAGACCATGTCTGAGACA
32884642 TGGC
1 TGGC
32884646 TTTGGCACCC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
90 80 0.99
91 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (90 bp):
TGGCGTCGGCACTAATAAGAGACTTCGTATAAGACCATATTTGGAATATGACATCGATATGTAGT
ACCATATAAGACCATGTCTGAGACA
Found at i:32887953 original size:46 final size:46
Alignment explanation
Indices: 32887886--32888060 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
32887876 TGTAACCCGC
*
32887886 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
32887932 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-G--GGC--GTTCGCAT
* * * ** *
32887982 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTTAGGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
32888025 CCATAATTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
32888061 ATGCCTAGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 56 0.54
47 26 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:32888002 original size:47 final size:47
Alignment explanation
Indices: 32887940--32888105 Score: 189
Period size: 47 Copynumber: 3.6 Consensus size: 47
32887930 ATCCATAAGT
32887940 GAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
* * * *
32887987 GAACTCAGACTCAACTCAACGAGTTTAG--G-C-A-TTCGCATCCATAATT
1 GAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT-C-TCA-C
* * *
32888033 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
*
32888080 GAACTCGGACTCAACTCAACGAGTTC
1 GAACTCAGACTCAACTCAACGAGTTC
32888106 GAAACTCAAC
Statistics
Matches: 98, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 24 0.24
47 52 0.53
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.23
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:32888103 original size:93 final size:93
Alignment explanation
Indices: 32887894--32888105 Score: 343
Period size: 93 Copynumber: 2.3 Consensus size: 93
32887884 GCCCATAAGT
* * *
32887894 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
32887959 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGCTCAGATGCCTAGTTACATCTCAC
* * * *
32887987 GAACTCAGACTCAACTCAACGAGTTTAGGCATTCGCATCCATAATTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
32888052 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCAGATGCCTAGTTACATCTCAC
32888080 GAACTCGGACTCAACTCAACGAGTTC
1 GAACTCGGACTCAACTCAACGAGTTC
32888106 GAAACTCAAC
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 108 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCAC
Found at i:32890577 original size:15 final size:15
Alignment explanation
Indices: 32890529--32890588 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
32890519 TAAAGATAAC
*
32890529 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
32890543 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
32890558 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
32890573 AAGAAATCTAGAATA
1 AAGAAATCCAGAATA
32890588 A
1 A
32890589 GATACGATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
14 9 0.24
15 27 0.73
16 1 0.03
ACGTcount: A:0.60, C:0.13, G:0.15, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32893626 original size:46 final size:46
Alignment explanation
Indices: 32893559--32893775 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 46
32893549 TGTAACCCGC
* * * *
32893559 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTACAT
* * *
32893605 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTGGGATATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGG-CATTTACAT
* * * * *
32893651 CCATAAGTGAACTCAGACTCAAGTTAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTACAT
* * * * * * *
32893701 -C-TCA-CGAAATCGGACTCAACTAAATGAGTTCGGGCATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTACAT
*
32893744 CCATAAGTGAACTCGGACTCAACTCAATGAGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGC
32893776 ACGGATGCCT
Statistics
Matches: 136, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
43 6 0.04
44 2 0.01
45 7 0.05
46 85 0.62
47 26 0.19
48 2 0.01
49 2 0.01
50 6 0.04
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTACAT
Found at i:32893804 original size:47 final size:47
Alignment explanation
Indices: 32893684--32893817 Score: 134
Period size: 46 Copynumber: 2.9 Consensus size: 47
32893674 TTAACGAGTT
* * **
32893684 CGGATGCCTAGTTACATCTCACGAAATCGGACTCAACTAAATGAGTT
1 CGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAATGAGCA
* *
32893731 CGG--G-C-A-TTCACATCCATAAGTGAACTCGGACTCAACTCAATGAGCA
1 CGGATGCCTAGTT-ACAT-C-TCA-CGAACTCGGACTCAACTCAATGAGCA
*
32893777 CGGATGCCTAGTTACATCTCACGAACTCGGACTTAACTCAA
1 CGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAA
32893818 CGGGTTCGGA
Statistics
Matches: 69, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
44 2 0.03
45 3 0.04
46 24 0.35
47 21 0.30
48 3 0.04
49 2 0.03
50 5 0.07
51 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (47 bp):
CGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAATGAGCA
Found at i:32893825 original size:93 final size:94
Alignment explanation
Indices: 32893613--32893826 Score: 288
Period size: 93 Copynumber: 2.3 Consensus size: 94
32893603 ATCCATAAGT
* ** * *
32893613 GAACTCGGACTCAACTCAACGAGTT-GGGATATTTGCATCCATAAGTGAACTCAGACTCAAGTTA
1 GAACTCGGACTCAACTCAACGAGTTCGGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
**
32893677 ACGAGTTCGGATGCCTAGTTACATCTCAC
66 ACGAGCACGGATGCCTAGTTACATCTCAC
* * * *
32893706 GAAATCGGACTCAACTAAATGAGTTCGGG-CATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCGGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
32893770 ATGAGCACGGATGCCTAGTTACATCTCAC
66 ACGAGCACGGATGCCTAGTTACATCTCAC
* *
32893799 GAACTCGGACTTAACTCAACGGGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
32893827 AACTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
93 100 0.97
94 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (94 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCACGGATGCCTAGTTACATCTCAC
Found at i:32896312 original size:39 final size:40
Alignment explanation
Indices: 32896148--32896323 Score: 175
Period size: 39 Copynumber: 4.5 Consensus size: 40
32896138 TGAATGATAC
* * * *
32896148 CCGGGCTAAGTCCC-AAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
32896187 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * *
32896227 CCGGGTTAAGACCCGAAGGCAATTGTG-AAGTTACTAAAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
32896266 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
32896306 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
32896324 TACGTGACTC
Statistics
Matches: 115, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
38 2 0.02
39 62 0.54
40 46 0.40
41 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:32903049 original size:107 final size:107
Alignment explanation
Indices: 32902843--32903035 Score: 325
Period size: 107 Copynumber: 1.8 Consensus size: 107
32902833 GAGGGAGAAT
* *
32902843 TGTAACATCCCAATTCAAGGCCTAGTTGGAACAGTGGTTTTGAGACCACAAATTTGAGATAGAAA
1 TGTAACATCCCAATTCAAGGCCTAGTCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
32902908 TAATTATTTTATGATTATTATAAAGTCCAGGATATTTATGCA
66 TAATTATTTTATGATTATTATAAAGTCCAGGATATTTATGCA
* *
32902950 TGTAACATCCTGAATT-AGGGCCTAGTCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAA
1 TGTAACATCC-CAATTCAAGGCCTAGTCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAA
*
32903014 ATAATTATTTTATGATTCTTAT
65 ATAATTATTTTATGATTATTAT
32903036 GAGGTCTATG
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
107 76 0.95
108 4 0.05
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (107 bp):
TGTAACATCCCAATTCAAGGCCTAGTCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
TAATTATTTTATGATTATTATAAAGTCCAGGATATTTATGCA
Found at i:32905512 original size:34 final size:35
Alignment explanation
Indices: 32905465--32905545 Score: 96
Period size: 34 Copynumber: 2.3 Consensus size: 35
32905455 AGGTAAGTAT
*
32905465 ATGT-AAGCTTATATTGAACTTGAT-TATTCGATTAC
1 ATGTGAAG-TTATATTGAACTT-ATATATTCCATTAC
**
32905500 ATGTGAA-TTATATTGAACTTATATATTCCATTTT
1 ATGTGAAGTTATATTGAACTTATATATTCCATTAC
32905534 ATGTGAAGTTAT
1 ATGTGAAGTTAT
32905546 TTTTAATGTG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 2 0.05
34 28 0.70
35 8 0.20
36 2 0.05
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.46
Consensus pattern (35 bp):
ATGTGAAGTTATATTGAACTTATATATTCCATTAC
Found at i:32907858 original size:2 final size:2
Alignment explanation
Indices: 32907851--32907876 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32907841 AAGTACATTC
32907851 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32907877 GAATACTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32911324 original size:46 final size:46
Alignment explanation
Indices: 32911274--32911446 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
32911264 TGGTTGAGCA
32911274 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
32911320 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32911365 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
32911413 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32911447 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32911430 original size:93 final size:93
Alignment explanation
Indices: 32911271--32911441 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
32911261 GGATGGTTGA
* *
32911271 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32911336 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
32911364 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32911429 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
32911442 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:32918239 original size:144 final size:144
Alignment explanation
Indices: 32917975--32918264 Score: 526
Period size: 144 Copynumber: 2.0 Consensus size: 144
32917965 CAATTACGAG
*
32917975 TTAAAGAGTCGAATGTGCCAAAAAATGCCTTTAGAACGAGGTATGGCCACTATGAGTTTCTTGTT
1 TTAAAGAGTCGAATATGCCAAAAAATGCCTTTAGAACGAGGTATGGCCACTATGAGTTTCTTGTT
32918040 ACGACATTTGGTTTAACGAATGCTCCTGTCGTGTATATGGATTTAATGAACCGAATCTTTCGGCC
66 ACGACATTTGGTTTAACGAATGCTCCTGTCGTGTATATGGATTTAATGAACCGAATCTTTCGGCC
32918105 ATATTTGGATAAGT
131 ATATTTGGATAAGT
* * *
32918119 TTAAAGAGTCTAATATGCCAAAAACTGCCTTTAGAACGGGGTATGGCCACTATGAGTTTCTTGTT
1 TTAAAGAGTCGAATATGCCAAAAAATGCCTTTAGAACGAGGTATGGCCACTATGAGTTTCTTGTT
* *
32918184 ATGACATTTGGTTTAACGAATGCTCCTGTCGTGTATATGGATTTAATGAATCGAATCTTTCGGCC
66 ACGACATTTGGTTTAACGAATGCTCCTGTCGTGTATATGGATTTAATGAACCGAATCTTTCGGCC
32918249 ATATTTGGATAAGT
131 ATATTTGGATAAGT
32918263 TT
1 TT
32918265 GTTGTGGTGT
Statistics
Matches: 140, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 140 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (144 bp):
TTAAAGAGTCGAATATGCCAAAAAATGCCTTTAGAACGAGGTATGGCCACTATGAGTTTCTTGTT
ACGACATTTGGTTTAACGAATGCTCCTGTCGTGTATATGGATTTAATGAACCGAATCTTTCGGCC
ATATTTGGATAAGT
Found at i:32920116 original size:50 final size:50
Alignment explanation
Indices: 32920057--32920152 Score: 140
Period size: 50 Copynumber: 1.9 Consensus size: 50
32920047 AAGCAGCCTC
* *
32920057 GGATAGACAAAAGTCCTATGTGGATTTGAAAAGAAACA-AAATTAAGACTT
1 GGATAGACAAAAGTCCTATGCGAATTTGAAAAGAAA-AGAAATTAAGACTT
**
32920107 GGATAGACAAAAGTTGTATGCGAATTTGAAAAGAAAAGAAATTAAG
1 GGATAGACAAAAGTCCTATGCGAATTTGAAAAGAAAAGAAATTAAG
32920153 TATCAAATCA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
49 1 0.02
50 40 0.98
ACGTcount: A:0.48, C:0.07, G:0.22, T:0.23
Consensus pattern (50 bp):
GGATAGACAAAAGTCCTATGCGAATTTGAAAAGAAAAGAAATTAAGACTT
Found at i:32922831 original size:13 final size:13
Alignment explanation
Indices: 32922813--32922837 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32922803 GGTTAGTTTA
32922813 TTAAACTAATTAT
1 TTAAACTAATTAT
32922826 TTAAACTAATTA
1 TTAAACTAATTA
32922838 ACGGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:32924853 original size:49 final size:49
Alignment explanation
Indices: 32924781--32924946 Score: 296
Period size: 49 Copynumber: 3.4 Consensus size: 49
32924771 TTTACCACAT
*
32924781 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
32924830 ATATATATACATTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
32924879 ATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
32924928 ATATATATACACTTTCACA
1 ATATATATACACTTTCACA
32924947 AATTTTGATA
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:32928388 original size:40 final size:40
Alignment explanation
Indices: 32928356--32928743 Score: 510
Period size: 40 Copynumber: 9.8 Consensus size: 40
32928346 CCAGCATGAT
* * * *
32928356 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
*** *
32928396 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
*
32928436 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * *
32928476 TGCTCTTCAGAACTTATCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * *
32928516 TGCTCTTCGGAACTTATCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
32928556 TGCTCTTCGGAA-TTAGTCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * *
32928595 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACAAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
32928635 TGCTCTTCGGAACTTAGTCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * * *
32928675 TGCTCTTCGGAA-TTAGTCCGGATACATCATTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
32928714 TGCTCTTCGGAACTTAGTCCGGATACATCA
1 TGCTCTTCGGAACTTAGCCCGGATATATCA
32928744 TTATCAATTC
Statistics
Matches: 319, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 71 0.22
40 248 0.78
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
Found at i:32928746 original size:119 final size:119
Alignment explanation
Indices: 32928356--32928743 Score: 537
Period size: 119 Copynumber: 3.3 Consensus size: 119
32928346 CCAGCATGAT
* * * * * ***
32928356 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAG-CACGGAT
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CGGAT
* *
32928420 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
65 ATATCACTAGCACGAATGCTCTTCGGAA-TTAGTCCGGATACATCATTAGCACGAA
* * *
32928476 TGCTCTTCAGAACTTATCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTA-TCCCAGAT
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT-CCGGAT
* *
32928540 ACATCACTAGCACGAATGCTCTTCGGAATTAGTCCGGATATATCATTAGCACGAA
65 ATATCACTAGCACGAATGCTCTTCGGAATTAGTCCGGATACATCATTAGCACGAA
* * * *
32928595 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACAAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
* *
32928660 TATCATTAGCACGAATGCTCTTCGGAATTAGTCCGGATACATCATTAGCATGAA
66 TATCACTAGCACGAATGCTCTTCGGAATTAGTCCGGATACATCATTAGCACGAA
*
32928714 TGCTCTTCGGAACTTAGTCCGGATACATCA
1 TGCTCTTCGGAACTTAGCCCGGATACATCA
32928744 TTATCAATTC
Statistics
Matches: 236, Mismatches: 29, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
119 157 0.67
120 78 0.33
121 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (119 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
TATCACTAGCACGAATGCTCTTCGGAATTAGTCCGGATACATCATTAGCACGAA
Found at i:32930837 original size:49 final size:49
Alignment explanation
Indices: 32930769--32930985 Score: 384
Period size: 49 Copynumber: 4.4 Consensus size: 49
32930759 GGCTTTACCA
*
32930769 CACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTAT
1 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
32930818 CACATATATATACATTTTCACATTCATCACATCGGCCATGAGGCCTTAT
1 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
32930867 CACATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTAT
32930916 CACATATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTAT
1 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
32930964 CACATATATATACACTTTCACA
1 CACATATATATACACTTTCACA
32930986 AATTTTGATA
Statistics
Matches: 161, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
48 29 0.18
49 131 0.81
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:32935993 original size:12 final size:11
Alignment explanation
Indices: 32935959--32936027 Score: 59
Period size: 12 Copynumber: 5.9 Consensus size: 11
32935949 TATGTATTTC
32935959 AAAATAAAATAAT
1 AAAAT-AAA-AAT
*
32935972 AAAATTAAAAT
1 AAAATAAAAAT
32935983 GAAAATAAAAAT
1 -AAAATAAAAAT
*
32935995 CAAAAGAAAAAT
1 -AAAATAAAAAT
*
32936007 AAAAATAAAACT
1 -AAAATAAAAAT
32936019 -AAATAAAAA
1 AAAATAAAAA
32936028 ATAGGAGGAT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
10 8 0.17
11 3 0.06
12 31 0.66
13 5 0.11
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:32935999 original size:18 final size:18
Alignment explanation
Indices: 32935957--32936016 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
32935947 GATATGTATT
32935957 TCAAAAT-AAAATAATAAAA
1 TCAAAATGAAAAT-A-AAAA
*
32935976 TTAAAATGAAAATAAAAA
1 TCAAAATGAAAATAAAAA
32935994 TCAAAA-GAAAAATAAAAA
1 TCAAAATG-AAAATAAAAA
32936012 T-AAAA
1 TCAAAA
32936017 CTAAATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
17 5 0.14
18 20 0.54
19 7 0.19
20 5 0.14
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.18
Consensus pattern (18 bp):
TCAAAATGAAAATAAAAA
Found at i:32941393 original size:13 final size:13
Alignment explanation
Indices: 32941375--32941399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32941365 GGTTTGTTTA
32941375 TTAAACTAATTAT
1 TTAAACTAATTAT
32941388 TTAAACTAATTA
1 TTAAACTAATTA
32941400 ACAGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:32942464 original size:21 final size:21
Alignment explanation
Indices: 32942423--32942466 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32942413 ATGTTCTCGA
*
32942423 TTTAGCCCGTTTTGGTCCCTT
1 TTTAGCCCGTTTTGCTCCCTT
*
32942444 TTTAGCTCGTTTTTGCT-CCTT
1 TTTAGCCCG-TTTTGCTCCCTT
32942465 TT
1 TT
32942467 AACTCTTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.05, C:0.25, G:0.16, T:0.55
Consensus pattern (21 bp):
TTTAGCCCGTTTTGCTCCCTT
Found at i:32943002 original size:27 final size:27
Alignment explanation
Indices: 32942918--32942996 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
32942908 GACCCCTATT
*
32942918 TGATAAAATGATTGTTTTGCCCCTACA
1 TGATAAAATGATTATTTTGCCCCTACA
* *
32942945 TGATAATATGACTATTTTGCCCCTACA
1 TGATAAAATGATTATTTTGCCCCTACA
*
32942972 TGATAAAATAATTATTTTGCCCCTA
1 TGATAAAATGATTATTTTGCCCCTA
32942997 TGTGATTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (27 bp):
TGATAAAATGATTATTTTGCCCCTACA
Found at i:32954248 original size:20 final size:20
Alignment explanation
Indices: 32954218--32954262 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
32954208 CTATTTTCTT
32954218 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
32954237 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
32954257 ATGGGC
1 ATGGGC
32954263 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:32959070 original size:40 final size:38
Alignment explanation
Indices: 32959021--32959128 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
32959011 ATCACGATTT
*
32959021 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
32959061 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
32959101 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
32959129 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:32959088 original size:80 final size:80
Alignment explanation
Indices: 32958980--32959128 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
32958970 TATGGTAACC
* * * *
32958980 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
32959044 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
32959060 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
32959125 CCGG
66 CCGG
32959129 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:32968741 original size:32 final size:32
Alignment explanation
Indices: 32968673--32968741 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
32968663 CATATGAGCG
* *
32968673 TGTGAAATCCACAGGACCTACCTACACGGGCA
1 TGTGAAATCCACAGGACCTACCCACACAGGCA
* * *
32968705 TGTGAAATCTACACGG-CCTACCCATACAGGCC
1 TGTGAAATCCACA-GGACCTACCCACACAGGCA
32968737 TGTGA
1 TGTGA
32968742 CTCTCCCAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 29 0.94
33 2 0.06
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.19
Consensus pattern (32 bp):
TGTGAAATCCACAGGACCTACCCACACAGGCA
Found at i:32974220 original size:40 final size:40
Alignment explanation
Indices: 32974144--32974367 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
32974134 CAAACTCAAC
* * * *
32974144 TGCCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAGA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAA
* * *
32974183 TGCCTTCGGGTCTTAGCCCAGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* * *
32974223 AGCCTTCGGGACTTAGCCGGGATATAATCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
32974263 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* * *
32974303 TGGCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* * *
32974343 TGCCCTCGGGACTTAACCAGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
32974368 CATTCGAATA
Statistics
Matches: 160, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 14 0.09
40 143 0.89
41 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
Found at i:32978471 original size:24 final size:24
Alignment explanation
Indices: 32978444--32978493 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
32978434 TAGAAACAGT
32978444 TAGGATAATGATTTCTAAGTGACA
1 TAGGATAATGATTTCTAAGTGACA
*
32978468 TAGGATAATGATTTCTAATTGACA
1 TAGGATAATGATTTCTAAGTGACA
32978492 TA
1 TA
32978494 CTCTAGTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (24 bp):
TAGGATAATGATTTCTAAGTGACA
Found at i:32980497 original size:53 final size:54
Alignment explanation
Indices: 32980425--32980636 Score: 205
Period size: 53 Copynumber: 3.9 Consensus size: 54
32980415 ACCTTTTCCT
* * ** * *
32980425 TTAT-GAACTTACCATTGCCATATCTTGACATGGTCTTACGTGGTATCCTTGCC
1 TTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCC
* * * **
32980478 TTAT-GAAATCACCAATGCCATGCCTTGGCATGGTCTTATATGGGA-CCTTTGCC
1 TTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCC
* * * * * *
32980531 TTATAGTAACTCATCAACGCCATGTCTTGACATGGTCTTACATGATTTCTTTACC
1 TTATAG-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCC
* * *
32980586 TTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
32980637 ATCTTACCAA
Statistics
Matches: 129, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 40 0.31
55 41 0.32
56 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
TTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCC
Found at i:32980568 original size:55 final size:54
Alignment explanation
Indices: 32980448--32980628 Score: 204
Period size: 55 Copynumber: 3.4 Consensus size: 54
32980438 ATTGCCATAT
* * *
32980448 CTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAAATCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAATGCCATGC
* * * * *
32980501 CTTGGCATGGTCTTATATGGGACCTTTGCCTTATAGTAACTCATCAACGCCATGT
1 CTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAATGCCATGC
* ** * *
32980556 CTTGACATGGTCTTACATGATTTCTTTACCTTATAGAACTTATCAATGCCATGC
1 CTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAATGCCATGC
*
32980610 CTTGGCATGGTCTTACATG
1 CTTGACATGGTCTTACATG
32980629 ATATCCTTAT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
52 2 0.02
53 27 0.25
54 34 0.32
55 43 0.41
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAATGCCATGC
Found at i:32987171 original size:54 final size:54
Alignment explanation
Indices: 32986986--32987182 Score: 245
Period size: 55 Copynumber: 3.6 Consensus size: 54
32986976 AATTTACCAT
* * * * *
32986986 TGCCATGTCTTGACATGGTCTTACGTGATATCCTTTCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAAAACTCATCAA
* * **
32987039 AGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAATAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAA-AACTCATCAA
* * *
32987094 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAAAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAAAACTCATCAA
*
32987148 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
32987183 ATCTTACCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 32 0.26
54 41 0.34
55 44 0.36
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAAAACTCATCAA
Found at i:32987550 original size:12 final size:12
Alignment explanation
Indices: 32987533--32987557 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32987523 CATAACTCAA
32987533 TAATAACAATAC
1 TAATAACAATAC
32987545 TAATAACAATAC
1 TAATAACAATAC
32987557 T
1 T
32987558 TGCATAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (12 bp):
TAATAACAATAC
Found at i:32988027 original size:30 final size:30
Alignment explanation
Indices: 32987993--32988052 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
32987983 ATTCCCTAAT
32987993 TCAAA-CTTTGGAAAAATTACAATTTTGCCC
1 TCAAACCTTT-GAAAAATTACAATTTTGCCC
* * *
32988023 TCAAACCTTTGCAGAATTACGATTTTGCCC
1 TCAAACCTTTGAAAAATTACAATTTTGCCC
32988053 CTAGGCTCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (30 bp):
TCAAACCTTTGAAAAATTACAATTTTGCCC
Found at i:33014749 original size:38 final size:38
Alignment explanation
Indices: 33014614--33014750 Score: 157
Period size: 38 Copynumber: 3.6 Consensus size: 38
33014604 CAAGGTATAA
* * * *
33014614 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT
* * * * *
33014653 AAACTCAGATATAATACAAGCACTAGGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
*
33014692 AACCCGGATATAATACCAGCACGAAGCCTGCCGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
*
33014730 AACCCGGATATAATTCCAGCA
1 AACCCGGATATAATACCAGCA
33014751 TATAGCCTGC
Statistics
Matches: 81, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
38 52 0.64
39 3 0.04
40 26 0.32
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:33014758 original size:38 final size:38
Alignment explanation
Indices: 33014614--33014779 Score: 145
Period size: 38 Copynumber: 4.3 Consensus size: 38
33014604 CAAGGTATAA
* * * * *
33014614 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCAGGA-TTT
* * * * * *
33014653 AAACTCAGATATAATACAAGCACTAGGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCAGGATTT
*
33014692 AACCCGGATATAATACCAGCACGAAGCCTGCCGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCAGGATTT
* * *
33014730 AACCCGGATATAATTCCAGCA-TATAGCCTGCAGGTCTTT
1 AACCCGGATATAATACCAGCACGA-AGCCTGCAGG-ATTT
33014769 AAGCCCGGATA
1 AA-CCCGGATA
33014780 CACATCAAAT
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
37 1 0.01
38 61 0.59
39 8 0.08
40 34 0.33
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCAGGATTT
Found at i:33014776 original size:78 final size:78
Alignment explanation
Indices: 33014614--33014779 Score: 176
Period size: 78 Copynumber: 2.1 Consensus size: 78
33014604 CAAGGTATAA
* * * * *
33014614 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACAAGCACTAG
1 AACCCGGATATAACACCAGCACGAAGCCTACCGGACTTTAAACCCAGATATAATACAAGCACTAA
33014679 GCCTGCGGGATTT
66 GCCTGCGGGATTT
* * * * *
33014692 AACCCGGATATAATACCAGCACGAAGCCTGCCGGA-TTT-AACCCGGATATAATTCCAGCA-TAT
1 AACCCGGATATAACACCAGCACGAAGCCTACCGGACTTTAAACCCAGATATAATACAAGCACTA-
**
33014754 AGCCTGCAGGTCTTT
65 AGCCTGC-GGGATTT
33014769 AAGCCCGGATA
1 AA-CCCGGATA
33014780 CACATCAAAT
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
75 2 0.03
76 23 0.32
77 10 0.14
78 38 0.52
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (78 bp):
AACCCGGATATAACACCAGCACGAAGCCTACCGGACTTTAAACCCAGATATAATACAAGCACTAA
GCCTGCGGGATTT
Found at i:33025131 original size:28 final size:28
Alignment explanation
Indices: 33025069--33025132 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
33025059 TATTTCCTTA
* *
33025069 GCCCGTGTCCTTCACACGGCCTAAACAC
1 GCCCGTGTCCTTCACACAGCCGAAACAC
* *
33025097 ACTCGTGTCCTTCACACAGCCGAAACAC
1 GCCCGTGTCCTTCACACAGCCGAAACAC
33025125 GCCCGTGT
1 GCCCGTGT
33025133 GGTCACCCCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.22, C:0.41, G:0.19, T:0.19
Consensus pattern (28 bp):
GCCCGTGTCCTTCACACAGCCGAAACAC
Found at i:33026315 original size:54 final size:54
Alignment explanation
Indices: 33026227--33026361 Score: 207
Period size: 54 Copynumber: 2.5 Consensus size: 54
33026217 CATTCTACGG
*
33026227 CGAGATTACCAATCCAGGCTAAATCCCCCGTATCGTAAACTCATAAGGTAATGC
1 CGAGATTACCAGTCCAGGCTAAATCCCCCGTATCGTAAACTCATAAGGTAATGC
* * * * *
33026281 CGAGATTAGCAGTCCAGGCTAAATCGCCCTTATCGTAAACTTATAAGGTAATGT
1 CGAGATTACCAGTCCAGGCTAAATCCCCCGTATCGTAAACTCATAAGGTAATGC
*
33026335 TGAGATTACCAGTCCAGGCTAAATCCC
1 CGAGATTACCAGTCCAGGCTAAATCCC
33026362 TTATAGTGAC
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (54 bp):
CGAGATTACCAGTCCAGGCTAAATCCCCCGTATCGTAAACTCATAAGGTAATGC
Found at i:33028511 original size:17 final size:18
Alignment explanation
Indices: 33028469--33028517 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
33028459 AGTTGAAAAG
33028469 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
33028488 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
33028505 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
33028518 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:33029505 original size:40 final size:40
Alignment explanation
Indices: 33029378--33029489 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 40
33029368 GCTGGAAATG
* * * **
33029378 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAAT
* * *
33029418 ATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTAAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAAT
*
33029458 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
33029490 ACGTGATTAA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAAT
Found at i:33034423 original size:49 final size:49
Alignment explanation
Indices: 33034297--33034668 Score: 554
Period size: 49 Copynumber: 7.7 Consensus size: 49
33034287 CCCTTCGGGA
* * * * * *
33034297 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
* *
33034344 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
* *
33034391 CTTATCACATATGTATACGCTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
* *
33034440 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCAATAGGC
1 CTTATCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
*
33034489 CTTATCACATATATACACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
* *
33034538 CTTATCACATATGTATATGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
* *
33034587 CTTATCACATATATACACGCTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
*
33034636 CTTATCACATATATATACACTTTCACATTCATC
1 CTTATCACATATATATACGCTTTCACATTCATC
33034669 GCGTAGAATC
Statistics
Matches: 297, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 45 0.15
49 251 0.85
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33041347 original size:27 final size:28
Alignment explanation
Indices: 33041317--33041386 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
33041307 ATAATAAGTC
*
33041317 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
33041344 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
33041372 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33041387 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33049268 original size:27 final size:28
Alignment explanation
Indices: 33049238--33049307 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
33049228 ATAATAAGTC
*
33049238 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
33049265 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
33049293 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33049308 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33051218 original size:38 final size:39
Alignment explanation
Indices: 33051077--33051215 Score: 208
Period size: 39 Copynumber: 3.6 Consensus size: 39
33051067 GAACTAAGAT
*
33051077 CCGAAGGCGTTCGTGCGAGTTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAG-TTAATAAATCCGGGTTAAGC
*
33051117 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* * * *
33051156 CCGAAGGCATTTGTGCGAGTTACT-AACCCGGGTTAAGT
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
33051194 CCGAAGGCATTCGTGCGAGTTA
1 CCGAAGGCATTCGTGCGAGTTA
33051216 CTATACGGGG
Statistics
Matches: 93, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 33 0.35
39 43 0.46
40 17 0.18
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:33051236 original size:38 final size:39
Alignment explanation
Indices: 33051077--33051243 Score: 182
Period size: 38 Copynumber: 4.3 Consensus size: 39
33051067 GAACTAAGAT
* * * *
33051077 CCGAAGGCGTTCGTGCGAGTTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAG-TTACT-AACCCGGGTTAAGTC
* *
33051117 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACT-AACCCGGGTTAAGTC
33051156 CCGAAGGCATTTGTGCGAGTTACTAACCCGGGTTAAGT-
1 CCGAAGGCATTTGTGCGAGTTACTAACCCGGGTTAAGTC
* * *
33051194 CCGAAGGCATTCGTGCGAGTTACTATA-CGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-ACCCGGGTTAAGTC
33051232 CCGAAGGCATTT
1 CCGAAGGCATTT
33051244 TAGCTAGTCG
Statistics
Matches: 116, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
37 2 0.02
38 53 0.46
39 44 0.38
40 17 0.15
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAACCCGGGTTAAGTC
Found at i:33053916 original size:27 final size:28
Alignment explanation
Indices: 33053886--33053955 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
33053876 ATAATAAGTC
*
33053886 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
33053913 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
33053941 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33053956 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33058563 original size:27 final size:28
Alignment explanation
Indices: 33058533--33058602 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
33058523 ATAATAAGTC
*
33058533 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
33058560 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
33058588 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33058603 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33060429 original size:39 final size:40
Alignment explanation
Indices: 33060374--33060543 Score: 231
Period size: 39 Copynumber: 4.3 Consensus size: 40
33060364 GAACTAAGAT
* *
33060374 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
33060413 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
* *
33060452 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
* * *
33060492 CCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTAATA-AATCC-GGGTTAAGTC
33060532 CCGAAGGCATTT
1 CCGAAGGCATTT
33060544 TAGCTAGTCG
Statistics
Matches: 121, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 73 0.60
40 41 0.34
41 7 0.06
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
Found at i:33067607 original size:39 final size:40
Alignment explanation
Indices: 33067498--33067667 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
33067488 GGACTAAGAT
* * *
33067498 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAACCCGGGTTAAGTC
* *
33067537 CCGAA-GCATTTGTGCGAGTGAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAACCCGGGTTAAGTC
*
33067575 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTAATAAACCCGGGTTAAGTC
* * * *
33067615 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTAATA-AACCCGGGTTAAGTC
33067655 CCGAAGGCATTTG
1 CCGAAGGCATTTG
33067668 AGCTAGTCGT
Statistics
Matches: 118, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
38 35 0.30
39 34 0.29
40 40 0.34
41 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTAATAAACCCGGGTTAAGTC
Found at i:33072904 original size:48 final size:48
Alignment explanation
Indices: 33072833--33073053 Score: 188
Period size: 48 Copynumber: 4.6 Consensus size: 48
33072823 TAAAGTACCA
* *
33072833 ATGCCATGTCCCCGACATTGTCTTACA-TGAATCCACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTG-ATCCACATATCATCGTCG
** * * *
33072881 ATGCCATGTCTTAGACATTGTCTTACACT-AGCACATATATCATCG-CTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGATC-CACATATCATCGTC-G
* *
33072929 ATGCCATGTCCCAGACATGGTCTTACACTGGCAT--ACATATTATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G-ATCCACATATCATCGTCG
* ** *
33072977 ATGCTATGTCCCAGACATGGTCTTACAC--AAGCACATATC-TCGGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGATCCACATATCATC-G-T--CG
33073026 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
33073054 GAAAACTCAT
Statistics
Matches: 142, Mismatches: 18, Indels: 25
0.77 0.10 0.14
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 7 0.05
47 4 0.03
48 99 0.70
49 28 0.20
51 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGATCCACATATCATCGTCG
Found at i:33073000 original size:96 final size:96
Alignment explanation
Indices: 33072830--33073053 Score: 274
Period size: 96 Copynumber: 2.3 Consensus size: 96
33072820 AAATAAAGTA
* * **
33072830 CCAATGCCATGTCCCCGACATTGTCTTACA-TGAATCCACATATCATCGTCGATGCCATGTCTTA
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGAAT-CACATATCATCGTCGATGCCATGTCCCA
* *
33072894 GACATTGTCTTACACTAGCACATATATC-ATCG
65 GACATGGTCTTACACAAGCACATATATCGAT-G
** * * * *
33072926 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCAT-ACATATTATCGTTGATGCTATGTCCCA
1 CCAATGCCATGTCCCAGACATGGTCTTACACT-GAATCACATATCATCGTCGATGCCATGTCCCA
*
33072990 GACATGGTCTTACACAAGCACATATCTCGGATG
65 GACATGGTCTTACACAAGCACATATATC-GATG
33073023 CCAATGCCATGTCCCAGACATGGTCTTACAC
1 CCAATGCCATGTCCCAGACATGGTCTTACAC
33073054 GAAAACTCAT
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
96 73 0.67
97 31 0.28
98 5 0.05
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (96 bp):
CCAATGCCATGTCCCAGACATGGTCTTACACTGAATCACATATCATCGTCGATGCCATGTCCCAG
ACATGGTCTTACACAAGCACATATATCGATG
Found at i:33077065 original size:45 final size:43
Alignment explanation
Indices: 33077005--33077101 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 43
33076995 GCCAAAACAT
* * *
33077005 GTGTCACATGTATCATGAACTCAGACCACAACTCAATGAGTTCA
1 GTGTCGCATATATCATAAACTCAGACCACAACTC-ATGAGTTCA
* *
33077049 GATGTCGCATATATCATAAACTCATACCATAACTCATGAGTTCA
1 G-TGTCGCATATATCATAAACTCAGACCACAACTCATGAGTTCA
33077093 G-GTCGCATA
1 GTGTCGCATA
33077102 GTTCCTAGTG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 8 0.17
44 11 0.23
45 28 0.60
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
GTGTCGCATATATCATAAACTCAGACCACAACTCATGAGTTCA
Found at i:33079243 original size:23 final size:23
Alignment explanation
Indices: 33079216--33079263 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
33079206 TTCCCATTGA
33079216 ACCATTCGGAATAAAAATCAAAT
1 ACCATTCGGAATAAAAATCAAAT
33079239 ACCATTCGGAATAAAAATCAAAT
1 ACCATTCGGAATAAAAATCAAAT
33079262 AC
1 AC
33079264 TCAAGGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.19, G:0.08, T:0.21
Consensus pattern (23 bp):
ACCATTCGGAATAAAAATCAAAT
Found at i:33079361 original size:47 final size:46
Alignment explanation
Indices: 33079283--33079411 Score: 186
Period size: 47 Copynumber: 2.8 Consensus size: 46
33079273 TCAATTGATA
* *
33079283 AGTACCTATACCATGGCCGTAGCCAAATCAAGGTAACTTATCCCAG
1 AGTACCTATACCATGCCCGTAGCCAAATCAAGGTAACTCATCCCAG
* * *
33079329 AGTACCTATACCATGTCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AGTACCTATACCATG-CCCGTAGCCAAATCAAGGTAACTCATCCCAG
*
33079376 AATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AGTACCTATACCAT-GCCCGTAGCCAAATCAAGGTA
33079412 TTATTGGCAC
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 15 0.20
47 59 0.79
48 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.22
Consensus pattern (46 bp):
AGTACCTATACCATGCCCGTAGCCAAATCAAGGTAACTCATCCCAG
Found at i:33081783 original size:27 final size:26
Alignment explanation
Indices: 33081752--33081929 Score: 140
Period size: 27 Copynumber: 6.6 Consensus size: 26
33081742 ACATAGGGGT
* *
33081752 AAAACAGTCATCTTACAATAAAAGGGC
1 AAAACAGTCATTTTAC-ATATAAGGGC
* *
33081779 AAAACAATCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTA-CATATAAGGGC
* *
33081806 AAAACAGCCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACAT-ATAAGGGC
**
33081833 AAAACAGTCATTTTACCCCATAAGGGC
1 AAAACAGTCATTTTA-CATATAAGGGC
* * ** *
33081860 AAAACAATTATTTTACCCCATAAAGGC
1 AAAACAGTCATTTTA-CATATAAGGGC
* ** * *
33081887 AAAATAGTCATTTTACCCCACAAGGGT
1 AAAACAGTCATTTTA-CATATAAGGGC
33081914 AAAACAGTCATTTTAC
1 AAAACAGTCATTTTAC
33081930 CCCATAAAGG
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
26 2 0.02
27 123 0.96
28 3 0.02
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.24
Consensus pattern (26 bp):
AAAACAGTCATTTTACATATAAGGGC
Found at i:33081810 original size:54 final size:53
Alignment explanation
Indices: 33081741--33081929 Score: 193
Period size: 54 Copynumber: 3.5 Consensus size: 53
33081731 AAACATACAT
* * * *
33081741 CACATAGGGGTAAAACAGTCATCTTACAATAAAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC-ATAAAAGGGCAAAACAGTCATTTTAC
* * *
33081795 CACATAAGGGCAAAACAGCCATTTTACCTCATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTACAT-AAAAGGGCAAAACAGTCATTTTAC
* * * *
33081849 CCCATAAGGGCAAAACAATTATTTTACCCCAT-AAA-GGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTA---CATAAAAGGGCAAAACAGTCATTTTAC
* * *
33081903 CCCACAAGGGTAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
33081930 CCCATAAAGG
Statistics
Matches: 113, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
51 1 0.01
53 1 0.01
54 107 0.95
55 2 0.02
57 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.23
Consensus pattern (53 bp):
CACATAAGGGCAAAACAGTCATTTTACATAAAAGGGCAAAACAGTCATTTTAC
Found at i:33081888 original size:81 final size:81
Alignment explanation
Indices: 33081773--33081955 Score: 276
Period size: 81 Copynumber: 2.3 Consensus size: 81
33081763 CTTACAATAA
* * * *
33081773 AAGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAGCCATTTTACCTCATAAGGGCAAAAC
1 AAGGGCAAAACAATTATTTTACCACATAAAGGCAAAACAGCCATTTTACCCCACAAGGGCAAAAC
33081838 AGTCATTTTACCCCAT
66 AGTCATTTTACCCCAT
* * * *
33081854 AAGGGCAAAACAATTATTTTACCCCATAAAGGCAAAATAGTCATTTTACCCCACAAGGGTAAAAC
1 AAGGGCAAAACAATTATTTTACCACATAAAGGCAAAACAGCCATTTTACCCCACAAGGGCAAAAC
33081919 AGTCATTTTACCCCAT
66 AGTCATTTTACCCCAT
* *
33081935 AAAGGCAAAATAATTATTTTA
1 AAGGGCAAAACAATTATTTTA
33081956 TCGATTAAAG
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.25
Consensus pattern (81 bp):
AAGGGCAAAACAATTATTTTACCACATAAAGGCAAAACAGCCATTTTACCCCACAAGGGCAAAAC
AGTCATTTTACCCCAT
Found at i:33081955 original size:27 final size:27
Alignment explanation
Indices: 33081773--33081944 Score: 245
Period size: 27 Copynumber: 6.4 Consensus size: 27
33081763 CTTACAATAA
* *
33081773 AAGGGCAAAACAATCATTTTACCACAT
1 AAGGGCAAAACAGTCATTTTACCCCAT
* *
33081800 AAGGGCAAAACAGCCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCCCAT
33081827 AAGGGCAAAACAGTCATTTTACCCCAT
1 AAGGGCAAAACAGTCATTTTACCCCAT
* *
33081854 AAGGGCAAAACAATTATTTTACCCCAT
1 AAGGGCAAAACAGTCATTTTACCCCAT
* * *
33081881 AAAGGCAAAATAGTCATTTTACCCCAC
1 AAGGGCAAAACAGTCATTTTACCCCAT
*
33081908 AAGGGTAAAACAGTCATTTTACCCCAT
1 AAGGGCAAAACAGTCATTTTACCCCAT
*
33081935 AAAGGCAAAA
1 AAGGGCAAAA
33081945 TAATTATTTT
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.22
Consensus pattern (27 bp):
AAGGGCAAAACAGTCATTTTACCCCAT
Found at i:33090828 original size:50 final size:50
Alignment explanation
Indices: 33090755--33091039 Score: 439
Period size: 50 Copynumber: 5.7 Consensus size: 50
33090745 TAGGGTTATG
*
33090755 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
* * *
33090805 TGTAATCCCATGTAAGACCATGTCTGGGACATGGCATTGGGATTGATATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
* *
33090855 TGTGATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATGGATATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
*
33090905 TGTGATCCCATGTAACACCATGTCTGGGACATGGCATTGGCATCGATATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
* *
33090955 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
** * *
33091005 T-T-ATTTCATTTAAGACCATGTCTAGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
33091040 CAATATGAGA
Statistics
Matches: 215, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
48 27 0.13
49 1 0.00
50 187 0.87
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (50 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
Found at i:33093069 original size:47 final size:47
Alignment explanation
Indices: 33093010--33093174 Score: 153
Period size: 47 Copynumber: 3.5 Consensus size: 47
33093000 TCCATAAGTG
*
33093010 AACTTGGACTCAACTCAACGAGTTCTGCTGCCTAGTTACATCTCACT
1 AACTCGGACTCAACTCAACGAGTTCTGCTGCCTAGTTACATCTCACT
* * * * * *
33093057 AACTCGGACTCAACTCAATGAG--CT-CAGGC--GTTCATATCTATAAGT
1 AACTCGGACTCAACTCAACGAGTTCTGCTGCCTAGTT-ACATC--TCACT
* *
33093102 AAACTCGGACTCAACTCAACGAGTT-TGGATGCCTAGTTACATCTCACG
1 -AACTCGGACTCAACTCAACGAGTTCT-GCTGCCTAGTTACATCTCACT
*
33093150 AACTCGAACTCAACTCAACGAGTTC
1 AACTCGGACTCAACTCAACGAGTTC
33093175 GGAACTCAAA
Statistics
Matches: 91, Mismatches: 16, Indels: 21
0.71 0.12 0.16
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 3 0.03
45 5 0.05
46 21 0.23
47 44 0.48
48 2 0.02
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGTTCTGCTGCCTAGTTACATCTCACT
Found at i:33093123 original size:93 final size:93
Alignment explanation
Indices: 33092963--33093171 Score: 303
Period size: 93 Copynumber: 2.2 Consensus size: 93
33092953 ACCCATAAGT
* * * * *
33092963 GAACTCGGACTCAAGTCAACGAGCTCGGGTGTTCACATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCACATCCATAAGTAAACTCGGACTCAACTCAA
*
33093028 CGAGTTCT-GCTGCCTAGTTACATCTCAC
66 CGAGTT-TGGATGCCTAGTTACATCTCAC
* * * *
33093056 TAACTCGGACTCAACTCAATGAGCTCAGGCGTTCATATCTATAAGTAAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCACATCCATAAGTAAACTCGGACTCAACTCAA
33093121 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTTGGATGCCTAGTTACATCTCAC
*
33093149 GAACTCGAACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
33093172 TTCGGAACTC
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 1 0.01
93 101 0.99
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCACATCCATAAGTAAACTCGGACTCAACTCAA
CGAGTTTGGATGCCTAGTTACATCTCAC
Found at i:33099361 original size:46 final size:46
Alignment explanation
Indices: 33099293--33099458 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 46
33099283 TGTAACCCAC
* *
33099293 CCATAAGTGAACTCGGATTCAACTCAACGAGCTCGGGTGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGTGTTTGCAT
* * **
33099339 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTATAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGTG--T--TTGCAT
* * * * * *
33099389 -C-TCA-CGAACTCAGACTTAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGTGTTTGCAT
33099432 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
33099459 AAAGTTTGGA
Statistics
Matches: 93, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 3 0.03
46 52 0.56
47 26 0.28
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGTGTTTGCAT
Found at i:33099471 original size:93 final size:93
Alignment explanation
Indices: 33099301--33099509 Score: 301
Period size: 93 Copynumber: 2.2 Consensus size: 93
33099291 ACCCATAAGT
* * * * *
33099301 GAACTCGGATTCAACTCAACGAGCTCGGGTGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
** *
33099366 CGAGTTCAGATGCCTAGTTATATCTCAC
66 AAAGTTCAGATGCCTAGTTACATCTCAC
*
33099394 GAACTCAGACTTAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
**
33099459 AAAGTTTGGATGCCTAGTTACATCTCAC
66 AAAGTTCAGATGCCTAGTTACATCTCAC
* *
33099487 GAACTCGGACTCAACTCATCGAG
1 GAACTCAGACTCAACTCAACGAG
33099510 TTCGTAACTC
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 102 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
AAAGTTCAGATGCCTAGTTACATCTCAC
Found at i:33101251 original size:6 final size:6
Alignment explanation
Indices: 33101241--33101412 Score: 129
Period size: 6 Copynumber: 27.8 Consensus size: 6
33101231 TATCATAACT
* * * *
33101241 AGAATT AGAATC AGAATC AGAATC A-AGTGAC AGAATC AAAATC AGAACC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
33101290 AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATC
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * *
33101340 AAAATC AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
33101389 AGGTAA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
33101413 GTGAATGCAA
Statistics
Matches: 132, Mismatches: 19, Indels: 30
0.73 0.10 0.17
Matches are distributed among these distances:
5 10 0.08
6 102 0.77
7 12 0.09
8 8 0.06
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:33101275 original size:25 final size:25
Alignment explanation
Indices: 33101241--33101412 Score: 126
Period size: 25 Copynumber: 6.9 Consensus size: 25
33101231 TATCATAACT
*
33101241 AGAATTAGAATCAGAATCAGAATCA
1 AGAATCAGAATCAGAATCAGAATCA
* * *
33101266 AGTGA-CAGAATCAAAATCAGAA-CC
1 AG-AATCAGAATCAGAATCAGAATCA
*
33101290 AGAATCAGAATTAGGTAA-CAGAATC-
1 AGAATCAGAATCA-G-AATCAGAATCA
*
33101315 AGAATCAGTATCAGGTAA-CAGAATCA
1 AGAATCAGAATCA-G-AATCAGAATCA
* *
33101341 A-AATCAGAACCAGAATCAGAATTA
1 AGAATCAGAATCAGAATCAGAATCA
* *
33101365 GGTAA-CAGAATCAGAATCAGTATCA
1 AG-AATCAGAATCAGAATCAGAATCA
*
33101390 GGTAA-CAGAATCAGAATCAGAAT
1 AG-AATCAGAATCAGAATCAGAAT
33101413 GTGAATGCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 18
0.78 0.11 0.12
Matches are distributed among these distances:
23 3 0.02
24 18 0.15
25 93 0.77
26 7 0.06
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGAATCA
Found at i:33101311 original size:37 final size:37
Alignment explanation
Indices: 33101247--33101322 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
33101237 AACTAGAATT
* *
33101247 AGAATCAGAATCAGAATCAAGTGACAGAATCAAAATC
1 AGAACCAGAATCAGAATCAAGTAACAGAATCAAAATC
* * *
33101284 AGAACCAGAATCAGAATTAGGTAACAGAATCAGAATC
1 AGAACCAGAATCAGAATCAAGTAACAGAATCAAAATC
33101321 AG
1 AG
33101323 TATCAGGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.50, C:0.16, G:0.18, T:0.16
Consensus pattern (37 bp):
AGAACCAGAATCAGAATCAAGTAACAGAATCAAAATC
Found at i:33101317 original size:62 final size:62
Alignment explanation
Indices: 33101247--33101411 Score: 294
Period size: 62 Copynumber: 2.7 Consensus size: 62
33101237 AACTAGAATT
* * *
33101247 AGAATCAGAATCAGAATCAAGTGACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
33101309 AGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
*
33101371 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAA
33101412 TGTGAATGCA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 99 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (62 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
Found at i:33101349 original size:37 final size:37
Alignment explanation
Indices: 33101308--33101403 Score: 122
Period size: 37 Copynumber: 2.6 Consensus size: 37
33101298 AATTAGGTAA
*
33101308 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAAT
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAAAAT
* * *
33101345 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAAAAT
*
33101382 CAGTATCAGGTAA-CAGAATCAG
1 CAGAATCA-G-AATCAGAATCAG
33101404 AATCAGAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
37 39 0.78
38 9 0.18
39 2 0.04
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.18
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGGTAACAGAATCAAAAT
Found at i:33101403 original size:19 final size:19
Alignment explanation
Indices: 33101252--33101384 Score: 112
Period size: 19 Copynumber: 6.8 Consensus size: 19
33101242 GAATTAGAAT
* *
33101252 CAGAATCAGAATCAAGTGA
1 CAGAATCAGAATCAGGTAA
*
33101271 CAGAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
33101288 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
33101308 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
*
33101333 CAGAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
33101350 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
33101370 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
33101385 TATCAGGTAA
Statistics
Matches: 93, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
17 3 0.03
18 26 0.28
19 42 0.45
20 4 0.04
21 1 0.01
23 1 0.01
25 16 0.17
ACGTcount: A:0.49, C:0.17, G:0.18, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:33101572 original size:27 final size:26
Alignment explanation
Indices: 33101530--33101581 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
33101520 GCGAGGCTGC
33101530 CAGATATTGTGACGAAGTCC-CCAGAA
1 CAGATATTGTGACGAAG-CCACCAGAA
*
33101556 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
33101582 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:33101622 original size:67 final size:67
Alignment explanation
Indices: 33101514--33101667 Score: 281
Period size: 67 Copynumber: 2.3 Consensus size: 67
33101504 CACCATAAAA
*
33101514 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCCCCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
33101579 AG
66 AG
* *
33101581 ATTGCAGCGAGGCTGCTAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACT
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
33101646 AG
66 AG
33101648 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
33101668 ACGCTTCCTC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 83 1.00
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
AG
Found at i:33102302 original size:27 final size:27
Alignment explanation
Indices: 33101893--33102294 Score: 506
Period size: 27 Copynumber: 15.0 Consensus size: 27
33101883 GGGGCAAAAT
* * * *
33101893 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
33101919 GATAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
33101946 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
33101973 GGTAATTCTACCCTATAGGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
33102000 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
33102027 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
33102054 AGTAATTCTACCCTAAAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
33102081 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
33102108 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
33102135 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
33102162 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
33102188 GGTAATTCTACCTTACTA-GGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* * *
33102215 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** * *
33102242 GGTAATTTTA-CAAACTAGGGGTGTTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
*
33102269 GGTAATTCTACCCTATAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
33102295 TAGTAATTTC
Statistics
Matches: 325, Mismatches: 45, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
26 40 0.12
27 283 0.87
28 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:33102315 original size:27 final size:26
Alignment explanation
Indices: 33102233--33102315 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 26
33102223 TACCCTACAA
* *
33102233 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTCACAATC-AG
* * *
33102260 GGGTGTTTTGGTAATTCTACCCTAT-AG
1 GGGTATTTTGGTAATT-T-CACAATCAG
*
33102287 GGGTATTTTAGTAATTTCACAATCGAG
1 GGGTATTTTGGTAATTTCACAATC-AG
33102314 GG
1 GG
33102316 TAAAACGGTA
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
25 4 0.09
26 1 0.02
27 35 0.81
28 1 0.02
29 2 0.05
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTCACAATCAG
Found at i:33102337 original size:27 final size:27
Alignment explanation
Indices: 33102307--33102692 Score: 249
Period size: 27 Copynumber: 14.3 Consensus size: 27
33102297 GTAATTTCAC
* *
33102307 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
33102334 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
33102361 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * * ***** *
33102388 AAGCAATGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *** * **
33102414 CCAGTCGAGGGTATTTCAGTAATTTTACA
1 --AATCGAGGGTAAAACAGTAATTCTGTA
* ****
33102443 AATCAGGGGGTATTTTAGTAATT-T-TA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * **** * *
33102469 CAAACCAGGGGTATTTTAGTAATTTTCTA
1 -AATCGA-GGGTAAAACAGTAATTCTGTA
** *
33102498 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
33102525 AATCGAGGG-AGAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
33102551 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * * *
33102578 ATTCAAGGGTAAAATAGTAACTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
33102605 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
33102632 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
** *
33102659 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
33102686 AATCGAG
1 AATCGAG
33102693 AGTACTTTGA
Statistics
Matches: 290, Mismatches: 60, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
26 27 0.09
27 223 0.77
28 36 0.12
29 4 0.01
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.32
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:33102382 original size:54 final size:54
Alignment explanation
Indices: 33102307--33102692 Score: 319
Period size: 54 Copynumber: 7.1 Consensus size: 54
33102297 GTAATTTCAC
* * * * *
33102307 AATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTA
* * * * * *** *
33102361 AATCGAGGGTAAAACAATAATTCTATAAAGCAATGGTACTTTGGTAATTTT-TA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTA
* *** * ** * *** **
33102414 CCAGTCGAGGGTATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACA
1 --AATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAATAGTAATTTTGTA
* **** * * * * *
33102471 AA-CCAGGGGTATTTTAGTAATTTTCTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGA-GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTA
* *
33102525 AATCGAGGG-AGAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTA
* * * *
33102578 ATTCAAGGGTAAAATAGTAACTCTGTAAATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTA
*
33102632 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTA
33102686 AATCGAG
1 AATCGAG
33102693 AGTACTTTGA
Statistics
Matches: 265, Mismatches: 60, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
53 43 0.16
54 158 0.60
55 48 0.18
56 15 0.06
57 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.32
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTA
Found at i:33102506 original size:28 final size:28
Alignment explanation
Indices: 33102395--33102506 Score: 115
Period size: 28 Copynumber: 4.0 Consensus size: 28
33102385 ATAAAGCAAT
* * * *
33102395 GGTACTTTGGTAATTTTTACCAGTCGA-G
1 GGTATTTTAGTAA-TTTTACAAATCGAGG
*
33102423 GGTATTTCAGTAATTTTACAAATC-AGGG
1 GGTATTTTAGTAATTTTACAAATCGA-GG
*
33102451 GGTATTTTAGTAATTTTACAAA-CCAGG
1 GGTATTTTAGTAATTTTACAAATCGAGG
33102478 GGTATTTTAGTAATTTT-CTAAATCGAGG
1 GGTATTTTAGTAATTTTAC-AAATCGAGG
33102506 G
1 G
33102507 TAAAATGGTA
Statistics
Matches: 72, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.03
27 32 0.44
28 38 0.53
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (28 bp):
GGTATTTTAGTAATTTTACAAATCGAGG
Found at i:33102686 original size:81 final size:80
Alignment explanation
Indices: 33102486--33102692 Score: 288
Period size: 81 Copynumber: 2.6 Consensus size: 80
33102476 GGGGTATTTT
* * * *
33102486 AGTAATTTTCTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGAGAACGGTAATTCTGTA
1 AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGAAAACAGTAATTCTGTA
*
33102551 AATCGAGGGTAAAAT
66 AATCGAGGGTAAAAC
* * * * * *
33102566 AGTAATTTTGTAATTCAAGGGTAAAATAGTAACTCTGTAAATCGAGGGTAAAATAGTAATTTTGT
1 AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGG-AAAACAGTAATTCTGT
33102631 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
* *
33102647 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAG
1 AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
33102693 AGTACTTTGA
Statistics
Matches: 109, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 42 0.39
81 67 0.61
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (80 bp):
AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGAAAACAGTAATTCTGTA
AATCGAGGGTAAAAC
Found at i:33102718 original size:27 final size:27
Alignment explanation
Indices: 33102688--33102739 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
33102678 ATTTTGTAAA
*
33102688 TCGAGAGTACTTTGA-TAATTTTACATG
1 TCGAGAGTA-TTTCAGTAATTTTACATG
*
33102715 TCGAGGGTATTTCAGTAATTTTACA
1 TCGAGAGTATTTCAGTAATTTTACA
33102740 AACTGAGGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (27 bp):
TCGAGAGTATTTCAGTAATTTTACATG
Found at i:33102733 original size:54 final size:53
Alignment explanation
Indices: 33102675--33102842 Score: 187
Period size: 54 Copynumber: 3.1 Consensus size: 53
33102665 GGGTAAAATG
* * ** *
33102675 GTAATTTTGTAAATCGAGAGTACTTTGATAATTTTACATGTCGAGGGTATTTCA
1 GTAATTTTATAAA-CGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
* **
33102729 GTAATTTTACAAACTGAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTATAAAC-GAGGGTACTTT-GATAATTTTACAAATCGAGGATATTTCA
* * *
33102783 GTAATGTTATAAACCGAGGGTACTTTGGTAATTTTACAACT-GAGGATATTTCA
1 GTAATTTTATAAA-CGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
33102836 GTAATTT
1 GTAATTT
33102843 GGTAAACTAA
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
53 20 0.21
54 71 0.75
55 4 0.04
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
GTAATTTTATAAACGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
Found at i:33102747 original size:27 final size:27
Alignment explanation
Indices: 33102717--33102842 Score: 125
Period size: 27 Copynumber: 4.7 Consensus size: 27
33102707 TTTACATGTC
33102717 GAGGGTATTTCAGTAATTTTACAAACT
1 GAGGGTATTTCAGTAATTTTACAAACT
33102744 GAGGGTATTTC-GATAATTTTACAAA-T
1 GAGGGTATTTCAG-TAATTTTACAAACT
* ** * * *
33102770 CGAGGATATTTGGGTAATGTTATAAACC
1 -GAGGGTATTTCAGTAATTTTACAAACT
*
33102798 GAGGGTACTTT-GGTAATTTTAC-AACT
1 GAGGGTA-TTTCAGTAATTTTACAAACT
*
33102824 GAGGATATTTCAGTAATTT
1 GAGGGTATTTCAGTAATTT
33102843 GGTAAACTAA
Statistics
Matches: 82, Mismatches: 11, Indels: 13
0.77 0.10 0.12
Matches are distributed among these distances:
25 3 0.04
26 18 0.22
27 57 0.70
28 4 0.05
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (27 bp):
GAGGGTATTTCAGTAATTTTACAAACT
Found at i:33108812 original size:27 final size:27
Alignment explanation
Indices: 33108774--33108907 Score: 160
Period size: 27 Copynumber: 5.0 Consensus size: 27
33108764 CCCTAATTGA
*
33108774 TAAAATGACTGTTTTGTCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
** *
33108801 TAAAATGACTGTTTTGAGCTTATGTAG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
33108828 TAAAATGATTGTTTTTCCTTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
33108855 TAAAATGACTGTTTCGCCCTTATTTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
33108882 TAAACTGACTATTTTGCCCCTATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
33108908 ATATATGTTT
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.43
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:33109254 original size:18 final size:18
Alignment explanation
Indices: 33109231--33109265 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
33109221 GGCTTGCATA
*
33109231 CTGTTTATTGTTACTGCT
1 CTGTTTACTGTTACTGCT
33109249 CTGTTTACTGTTACTGC
1 CTGTTTACTGTTACTGC
33109266 AATGGGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.20, G:0.17, T:0.51
Consensus pattern (18 bp):
CTGTTTACTGTTACTGCT
Found at i:33114815 original size:40 final size:40
Alignment explanation
Indices: 33114754--33114975 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
33114744 ATTCGGATTG
33114754 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
33114794 ATATCTGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
33114834 ATAACCGGGCCAAGTCCCGAAGGCAATTGTCCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
33114874 ATAACAGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
33114914 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
33114954 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
33114976 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:33116374 original size:19 final size:19
Alignment explanation
Indices: 33116350--33116395 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
33116340 CTAAATAGAT
*
33116350 AAAATAATAAA-AATAATAA
1 AAAATAA-AAATAAAAATAA
33116369 AAAATAAAAATAAAAAT-A
1 AAAATAAAAATAAAAATAA
33116387 AAAATAAAA
1 AAAATAAAA
33116396 GATAGAGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAATAAAAATAAAAATAA
Found at i:33116377 original size:6 final size:6
Alignment explanation
Indices: 33116355--33116395 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
33116345 TAGATAAAAT
*
33116355 AATAAA AAT-AA TA-AAA AATAAA AATAAA AATAAA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA A
33116396 GATAGAGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 6 0.19
6 25 0.81
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:33131526 original size:30 final size:30
Alignment explanation
Indices: 33131490--33131647 Score: 193
Period size: 30 Copynumber: 5.5 Consensus size: 30
33131480 GACAAGATTG
* * * *
33131490 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
**
33131520 GCACTAAGTGTGCGAG-TT-TGATTATATA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
*
33131548 GCACTAAGTGTGCGAGC-T--GATTATATA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
*
33131575 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
*
33131605 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
33131634 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
33131648 GATTCACTAT
Statistics
Matches: 117, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
27 26 0.22
28 23 0.20
29 22 0.19
30 46 0.39
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTTAAAATTATATA
Found at i:33131576 original size:27 final size:28
Alignment explanation
Indices: 33131519--33131647 Score: 190
Period size: 27 Copynumber: 4.5 Consensus size: 28
33131509 AAAATTGTAC
*
33131519 AGCACTAAGTGTGCGAGTTTG-ATTATAT
1 AGCACTAAGTGTGCGAG-CTGAATTATAT
33131547 AGCACTAAGTGTGCGAGCTG-ATTATAT
1 AGCACTAAGTGTGCGAGCTGAATTATAT
33131574 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTG--AATTATAT
*
33131604 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTG-AATTATAT
33131633 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
33131648 GATTCACTAT
Statistics
Matches: 96, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
27 29 0.30
28 17 0.18
29 23 0.24
30 27 0.28
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTGAATTATAT
Found at i:33131613 original size:57 final size:56
Alignment explanation
Indices: 33131519--33131647 Score: 190
Period size: 57 Copynumber: 2.3 Consensus size: 56
33131509 AAAATTGTAC
* *
33131519 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTG-ATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGTGTGCGAGCTGAAATATAT
33131574 AGCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG---ATTATATAGCACTAAGTGTGCGAGCTG-AAATATAT
33131633 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
33131648 GATTCACTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
54 2 0.03
55 17 0.25
57 27 0.40
59 21 0.31
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (56 bp):
AGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGTGTGCGAGCTGAAATATAT
Found at i:33139489 original size:30 final size:30
Alignment explanation
Indices: 33139453--33139613 Score: 231
Period size: 30 Copynumber: 5.5 Consensus size: 30
33139443 GACAAGATTG
* * * * *
33139453 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
33139483 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
33139511 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
33139541 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
33139571 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
33139600 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
33139614 GATTCACTAT
Statistics
Matches: 122, Mismatches: 5, Indels: 9
0.90 0.04 0.07
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 20 0.16
30 76 0.62
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:33139544 original size:58 final size:58
Alignment explanation
Indices: 33139453--33139613 Score: 227
Period size: 58 Copynumber: 2.8 Consensus size: 58
33139443 GACAAGATTG
* * * * * *
33139453 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAG-CTGAATTATATA
33139511 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTG--AATTATATA
33139571 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCG
33139614 GATTCACTAT
Statistics
Matches: 94, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
57 2 0.02
58 41 0.44
59 20 0.21
60 31 0.33
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAATTATATA
Found at i:33173678 original size:29 final size:29
Alignment explanation
Indices: 33173643--33173716 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
33173633 GTTGTGAGAT
*
33173643 TGGCACTAAGTGTGC-AGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGA-G-TTGAAAGTACA
*
33173672 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
33173701 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33173717 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 5 0.12
29 35 0.85
30 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:33194855 original size:39 final size:39
Alignment explanation
Indices: 33194801--33194963 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
33194791 TGTGAATGAA
33194801 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
33194840 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
33194879 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
33194918 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
33194958 TGTGCG
1 TGTGCG
33194964 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:33194979 original size:40 final size:39
Alignment explanation
Indices: 33194801--33194993 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
33194791 TGTGAATGAA
* *
33194801 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
33194840 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
33194879 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
33194918 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
33194958 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
33194994 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:33202828 original size:39 final size:39
Alignment explanation
Indices: 33202774--33202936 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
33202764 TGTGAATGAA
33202774 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
33202813 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
33202852 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
33202891 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
33202931 TGTGCG
1 TGTGCG
33202937 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:33202952 original size:40 final size:39
Alignment explanation
Indices: 33202774--33202966 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
33202764 TGTGAATGAA
* *
33202774 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
33202813 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
33202852 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
33202891 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
33202931 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
33202967 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:33204542 original size:27 final size:27
Alignment explanation
Indices: 33204512--33204566 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
33204502 AACCTTAATA
33204512 ATAAAAAAAAATACGCTAAACTAGCAT
1 ATAAAAAAAAATACGCTAAACTAGCAT
*** **
33204539 ATAAAGGGAAATGTGCTAAACTAGCAT
1 ATAAAAAAAAATACGCTAAACTAGCAT
33204566 A
1 A
33204567 CTATTCCTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.20
Consensus pattern (27 bp):
ATAAAAAAAAATACGCTAAACTAGCAT
Found at i:33206611 original size:30 final size:30
Alignment explanation
Indices: 33206577--33206677 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 30
33206567 GACCTGAATG
33206577 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
* * *
33206607 CATG-TT-ATTATTATCTGATAAGGTTGACCTGAATG-
1 CATGTTTGACTGTTA-CT-AT----TT-A-CTGCATGC
33206642 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
33206672 CATGTT
1 CATGTT
33206678 ATTATTATCT
Statistics
Matches: 54, Mismatches: 6, Indels: 22
0.66 0.07 0.27
Matches are distributed among these distances:
28 5 0.09
29 10 0.19
30 13 0.24
31 2 0.04
34 2 0.04
35 7 0.13
36 10 0.19
37 5 0.09
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (30 bp):
CATGTTTGACTGTTACTATTTACTGCATGC
Found at i:33206664 original size:65 final size:65
Alignment explanation
Indices: 33206560--33206690 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
33206550 CCCCTAGGGT
33206560 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
33206625 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
33206690 T
1 T
33206691 GCATGGGACT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:33210480 original size:79 final size:81
Alignment explanation
Indices: 33210379--33210563 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
33210369 ACGACTCGCT
** * *
33210379 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
33210442 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
33210459 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
33210523 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
33210539 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33210564 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:33210563 original size:40 final size:39
Alignment explanation
Indices: 33210372--33210563 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
33210362 AGATATAACG
* ** * *
33210372 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
33210412 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
33210452 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
33210491 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
33210531 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
33210564 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:33212733 original size:84 final size:85
Alignment explanation
Indices: 33212625--33212797 Score: 285
Period size: 85 Copynumber: 2.0 Consensus size: 85
33212615 TTCAAACTTC
*
33212625 ATTGCCTGCTTTTCGACTTGAAGAGAT-AAAAAAAGTCTTCATCAATCAAAATTAACTTCTTTTA
1 ATTGCCTGCTTCTCGACTTGAAGAGATCAAAAAAAGTCTTCATCAATCAAAATTAACTTCTTTTA
33212689 GAACCACACCAAACAATCAG
66 GAACCACACCAAACAATCAG
* * *
33212709 ATTGTCTGCTTCTCGACTTGAAGAGTTCAGAAAAAGTCTTCATCAATCAAAATTAACTTCTTTTA
1 ATTGCCTGCTTCTCGACTTGAAGAGATCAAAAAAAGTCTTCATCAATCAAAATTAACTTCTTTTA
* *
33212774 GAACCACACCAAATAGTCAG
66 GAACCACACCAAACAATCAG
33212794 ATTG
1 ATTG
33212798 ATTAGATTGA
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
84 24 0.29
85 58 0.71
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (85 bp):
ATTGCCTGCTTCTCGACTTGAAGAGATCAAAAAAAGTCTTCATCAATCAAAATTAACTTCTTTTA
GAACCACACCAAACAATCAG
Found at i:33212956 original size:19 final size:21
Alignment explanation
Indices: 33212920--33212958 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
33212910 TTCTATTTTA
*
33212920 AATTATTTTATTATATTTATG
1 AATTATTTTAATATATTTATG
33212941 AATT-TTTTAATA-ATTTAT
1 AATTATTTTAATATATTTAT
33212959 TTGATCGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
AATTATTTTAATATATTTATG
Found at i:33214245 original size:27 final size:29
Alignment explanation
Indices: 33214215--33214268 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
33214205 AGTAATTTAG
33214215 AATG-TATTT-TAAAT-TTTAAGTATATAT
1 AATGTTATTTATAAATATTTAA-TATATAT
*
33214242 AATGTTCTTTATAAATATTTAATATAT
1 AATGTTATTTATAAATATTTAATATAT
33214269 TTGTAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 4 0.17
28 4 0.17
29 10 0.43
30 5 0.22
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.52
Consensus pattern (29 bp):
AATGTTATTTATAAATATTTAATATATAT
Found at i:33215730 original size:45 final size:45
Alignment explanation
Indices: 33215660--33215749 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
33215650 CCTTTTTAAA
* * *
33215660 CTTACCATTATCATGTCTTGACATGGTCTTACATGGTATCCTTGC
1 CTTACCATTACCATGCCTTGACATGGTCTTACATGGGATCCTTGC
* * * *
33215705 CTTACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTGC
1 CTTACCATTACCATGCCTTGACATGGTCTTACATGGGATCCTTGC
33215750 TTTATCATAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (45 bp):
CTTACCATTACCATGCCTTGACATGGTCTTACATGGGATCCTTGC
Found at i:33215856 original size:54 final size:55
Alignment explanation
Indices: 33215706--33215856 Score: 160
Period size: 55 Copynumber: 2.8 Consensus size: 55
33215696 TATCCTTGCC
* * * * * * * *
33215706 TTACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTGCTTTATCATAGT
1 TTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAAAACT
* * * * * *
33215761 TTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACT
1 TTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAAAACT
*
33215816 TT-CCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
33215857 AAACCCTAAT
Statistics
Matches: 76, Mismatches: 20, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
54 33 0.43
55 43 0.57
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (55 bp):
TTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAAAACT
Found at i:33231016 original size:53 final size:53
Alignment explanation
Indices: 33230936--33231040 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
33230926 TTCCTTTTTC
* * * * *
33230936 AACTTACCATTGCCATATCTTGACATGGCCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCACACCTTGACATGGCCTTACATGGGATCCTTGCCTTATG
* * * *
33230989 AACTCACCATTGCCACGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCACACCTTGACATGGCCTTACATGGGATCCTTGCCTTAT
33231041 CGTAGTTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (53 bp):
AACTCACCATTGCCACACCTTGACATGGCCTTACATGGGATCCTTGCCTTATG
Done.