Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 112 of 410
Found at i:33232601 original size:15 final size:15
Alignment explanation
Indices: 33232567--33232600 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
33232557 AAATTTTAAG
33232567 AAAAATGAATATTGT
1 AAAAATGAATATTGT
*
33232582 AAAAATGGATATT-T
1 AAAAATGAATATTGT
33232596 AAAAA
1 AAAAA
33232601 AATTCTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (15 bp):
AAAAATGAATATTGT
Found at i:33232685 original size:17 final size:18
Alignment explanation
Indices: 33232663--33232696 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
33232653 TTTCTTTATT
33232663 TTTTTAG-TTTTACTTTA
1 TTTTTAGTTTTTACTTTA
33232680 TTTTTAGTTTTTACTTT
1 TTTTTAGTTTTTACTTT
33232697 TACAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.74
Consensus pattern (18 bp):
TTTTTAGTTTTTACTTTA
Found at i:33232746 original size:13 final size:13
Alignment explanation
Indices: 33232730--33232772 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
33232720 TTTCTTTAAA
33232730 ATTTTCATTTTAT
1 ATTTTCATTTTAT
* * *
33232743 ATTTTTATTTAAA
1 ATTTTCATTTTAT
33232756 ATTTTCATTTTAT
1 ATTTTCATTTTAT
33232769 ATTT
1 ATTT
33232773 AACTTTACTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (13 bp):
ATTTTCATTTTAT
Found at i:33232753 original size:26 final size:26
Alignment explanation
Indices: 33232716--33232772 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
33232706 TGGGACATTC
*
33232716 TATTTTTCTTTAAAATTTTCATTTTA
1 TATTTTTATTTAAAATTTTCATTTTA
33232742 TATTTTTATTTAAAATTTTCATTTTA
1 TATTTTTATTTAAAATTTTCATTTTA
33232768 TATTT
1 TATTT
33232773 AACTTTACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (26 bp):
TATTTTTATTTAAAATTTTCATTTTA
Found at i:33232779 original size:26 final size:27
Alignment explanation
Indices: 33232723--33232779 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
33232713 TTCTATTTTT
*
33232723 CTTTAAAATTTTCATTTTATATTTTTA
1 CTTTAAAATTTTCATTTTATATTTTAA
33232750 -TTTAAAATTTTCATTTTATA-TTTAA
1 CTTTAAAATTTTCATTTTATATTTTAA
33232775 CTTTA
1 CTTTA
33232780 CTTTATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 4 0.14
26 24 0.86
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (27 bp):
CTTTAAAATTTTCATTTTATATTTTAA
Found at i:33234990 original size:28 final size:28
Alignment explanation
Indices: 33234955--33235081 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
33234945 ATAATAAGCC
* *
33234955 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
*
33234983 CGTACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
33235011 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** *
33235039 CGCACACTTAGTGCTATACAATTTGAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
33235068 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33235082 CAATCTCATG
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
28 70 0.79
29 19 0.21
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33243458 original size:43 final size:42
Alignment explanation
Indices: 33243363--33243460 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
33243353 GACTTATGAT
*
33243363 TTACATGTAAGACCATGTCTGGGATGTTAGCATCATATTTGA
1 TTACATGTAAGACCATATCTGGGATGTTAGCATCATATTTGA
*** * *
33243405 TTTTGTGTAAGACCCTATCTGGGATAG-TGGCATCGATATTTGA
1 TTACATGTAAGACCATATCTGGGAT-GTTAGCATC-ATATTTGA
33243448 TTACATGTAAGAC
1 TTACATGTAAGAC
33243461 AACGTCTGGG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 26 0.58
43 19 0.42
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (42 bp):
TTACATGTAAGACCATATCTGGGATGTTAGCATCATATTTGA
Found at i:33243469 original size:43 final size:41
Alignment explanation
Indices: 33243363--33243480 Score: 103
Period size: 43 Copynumber: 2.8 Consensus size: 41
33243353 GACTTATGAT
*
33243363 TTACATGTAAGACCATGTCTGGGATGTTAGCATCATATTTGA
1 TTACATGTAAGA-CACGTCTGGGATGTTAGCATCATATTTGA
*** * * *
33243405 TTTTGTGTAAGACCCTATCTGGGATAG-TGGCATCGATATTTGA
1 TTACATGTAAGACAC-GTCTGGGAT-GTTAGCATC-ATATTTGA
* *
33243448 TTACATGTAAGACAACGTCTGGGACGTTGGCAT
1 TTACATGTAAGAC-ACGTCTGGGATGTTAGCAT
33243481 TGTACGAGTT
Statistics
Matches: 58, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.02
42 24 0.41
43 32 0.55
44 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (41 bp):
TTACATGTAAGACACGTCTGGGATGTTAGCATCATATTTGA
Found at i:33247414 original size:21 final size:20
Alignment explanation
Indices: 33247375--33247414 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
33247365 GGCGAAAATG
* *
33247375 GGAAAGAGTAAAAGTTTTGA
1 GGAAAAAGTAAAAGGTTTGA
33247395 GGAAAAAGTAAAAAGGTTTG
1 GGAAAAAGT-AAAAGGTTTG
33247415 GGAGTTTGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (20 bp):
GGAAAAAGTAAAAGGTTTGA
Found at i:33247466 original size:9 final size:9
Alignment explanation
Indices: 33247452--33247479 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
33247442 TATTGTTTGA
33247452 TATTCGAAT
1 TATTCGAAT
33247461 TATTCGAAT
1 TATTCGAAT
33247470 TATTCGAAT
1 TATTCGAAT
33247479 T
1 T
33247480 CGAAAACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:33262547 original size:21 final size:22
Alignment explanation
Indices: 33262508--33262548 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
33262498 GTTGAAATGT
33262508 CACACGGGAGTGTTGCCCCTCC
1 CACACGGGAGTGTTGCCCCTCC
*
33262530 CACACGGGCGTG-TGCCCCT
1 CACACGGGAGTGTTGCCCCT
33262549 GTGTTAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.41, G:0.29, T:0.17
Consensus pattern (22 bp):
CACACGGGAGTGTTGCCCCTCC
Found at i:33277386 original size:10 final size:10
Alignment explanation
Indices: 33277373--33277410 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
33277363 TTATTTTCAT
33277373 TTATCTTTAA
1 TTATCTTTAA
33277383 TTATCTTTAA
1 TTATCTTTAA
*
33277393 TTAT-TTATAT
1 TTATCTT-TAA
33277403 TTATCTTT
1 TTATCTTT
33277411 TGGGATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:33283689 original size:6 final size:6
Alignment explanation
Indices: 33283655--33283780 Score: 112
Period size: 6 Copynumber: 20.2 Consensus size: 6
33283645 AGGCAACTTA
* * *
33283655 ATTTTT ATTTCT CTTTATT TTTCTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTT-TT ATT-TTT ATTTTT ATTTTT ATTTTT ATTTTT
* * *
33283705 ATTTTT ATTTTT ATTTTT A-TTTT ATTTTA ATTATTT ATCTTA ATTATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATT-TTT ATTTTT ATT-TTT
*
33283754 ATTGCTTA ATTATTT A-TTTT ATTTTT A
1 ATT--TTT ATT-TTT ATTTTT ATTTTT A
33283781 ATATTAATAA
Statistics
Matches: 98, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
5 9 0.09
6 64 0.65
7 19 0.19
8 6 0.06
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.75
Consensus pattern (6 bp):
ATTTTT
Found at i:33283763 original size:15 final size:14
Alignment explanation
Indices: 33283725--33283771 Score: 71
Period size: 13 Copynumber: 3.4 Consensus size: 14
33283715 TTATTTTTAT
33283725 TTTATT-TTAATTA
1 TTTATTCTTAATTA
33283738 TTTA-TCTTAATTA
1 TTTATTCTTAATTA
33283751 TTTATTGCTTAATTA
1 TTTATT-CTTAATTA
33283766 TTTATT
1 TTTATT
33283772 TTATTTTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 1 0.03
13 15 0.48
14 1 0.03
15 14 0.45
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (14 bp):
TTTATTCTTAATTA
Found at i:33286568 original size:96 final size:97
Alignment explanation
Indices: 33286420--33286601 Score: 267
Period size: 96 Copynumber: 1.9 Consensus size: 97
33286410 TTTAAGAATA
* * * *
33286420 TGTTGGGCTGAGTAACCGGGGTGAGGTGTTTGTTTGTCATCTCTCTTCGCGTCGAAAGGTTCGAT
1 TGTTGGGCTGAGTAACCAGGGTGAGGTGTTTGATTGTCATCTCTCTTCGCGTCAAAAGGTTCAAT
* *
33286485 ATGTTCTTAAG-AAAATTAAAAATTAGGAGTG
66 ATATTCTTAAGCAAAACTAAAAATTAGGAGTG
* * * *
33286516 TGTTGGGCTGAGTAACTATGGTGAGGTGTTTGATTGTTATCTCTCTTTGCGTCAAAAGGTTCAAT
1 TGTTGGGCTGAGTAACCAGGGTGAGGTGTTTGATTGTCATCTCTCTTCGCGTCAAAAGGTTCAAT
33286581 ATATTCTTAAGCAAAACTAAA
66 ATATTCTTAAGCAAAACTAAA
33286602 TAAATAAATA
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
96 67 0.89
97 8 0.11
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (97 bp):
TGTTGGGCTGAGTAACCAGGGTGAGGTGTTTGATTGTCATCTCTCTTCGCGTCAAAAGGTTCAAT
ATATTCTTAAGCAAAACTAAAAATTAGGAGTG
Found at i:33287270 original size:10 final size:10
Alignment explanation
Indices: 33287255--33287300 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
33287245 TAATTTTAAG
33287255 ATTTAT-TTT
1 ATTTATCTTT
33287264 CATTTATCTTT
1 -ATTTATCTTT
*
33287275 AATTATCTTT
1 ATTTATCTTT
33287285 ATTTAT-TTGT
1 ATTTATCTT-T
33287295 ATTTAT
1 ATTTAT
33287301 ATTTTAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 2 0.06
10 27 0.84
11 3 0.09
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:33291286 original size:15 final size:16
Alignment explanation
Indices: 33291266--33291298 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
33291256 TATATATTTT
33291266 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
33291281 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
33291298 T
1 T
33291299 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:33291384 original size:22 final size:22
Alignment explanation
Indices: 33291345--33291403 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
33291335 GTTTTAAGAA
*
33291345 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
33291366 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
33291388 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
33291404 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:33291434 original size:26 final size:26
Alignment explanation
Indices: 33291377--33291435 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
33291367 TGTTTTAATA
33291377 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATGTTTTTAAATATAT
* * *
33291402 TTGATTTATTATATTTTTTAAAT-TTT
1 TTTATTTATTAT-GTTTTTAAATATAT
33291428 TTTATTTA
1 TTTATTTA
33291436 ATGAAATAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 6 0.21
26 13 0.46
27 9 0.32
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.69
Consensus pattern (26 bp):
TTTATTTATTATGTTTTTAAATATAT
Found at i:33298496 original size:1 final size:1
Alignment explanation
Indices: 33298490--33298515 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
33298480 ATCAAAACTG
33298490 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
33298516 GCACTTTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:33306652 original size:197 final size:196
Alignment explanation
Indices: 33306318--33306678 Score: 625
Period size: 197 Copynumber: 1.8 Consensus size: 196
33306308 GTCACACGTC
* * * *
33306318 CGTGTCCTTAGACTGTGTAACTCTCTGTTTATGACGTCAACATGTCATCGAACCACACGGCTGGG
1 CGTGTCCTCAGACCGTGTAACTCTCTATTTATGACGTCAACATGTCATCGAACCACACGGCCGGG
33306383 CTACACGCCCATGTCTCCTGGTCGTGTCCCTCACACGATTGAGACACACGACTGTGTCTCAGCCC
66 CTACACGCCCATGTCTCCTGGTCGTGTCCCTCACACGATTGAGACACACGACTGTGTCTCAGCCC
33306448 GTGCGGCCAACACTTAGGCTATTTTCCAAGCCTTGTCACAAGCCCGTGTGGACATAAGGGCATGC
131 GTGCGGCCAACACTTAGGCTATTTTCCAAGCCTTGTCACAAGCCCGTGTGGACATAAGGGCATGC
33306513 T
196 T
33306514 CGTGTCCTCAGACCGTGTAACTCTCTATTTATGACGTCAACATGTGCATCGAACCACACGGCCGG
1 CGTGTCCTCAGACCGTGTAACTCTCTATTTATGACGTCAACATGT-CATCGAACCACACGGCCGG
* * * *
33306579 G-TCACACGCCCGTGTCTCTTGGTCGTGTCCCTCACACGGTTGAGACACACGGCTGTGTCTCAGC
65 GCT-ACACGCCCATGTCTCCTGGTCGTGTCCCTCACACGATTGAGACACACGACTGTGTCTCAGC
33306643 CCGTGCGGCCAACACTTAGGCTATTTTCCAAGCCTT
129 CCGTGCGGCCAACACTTAGGCTATTTTCCAAGCCTT
33306679 CATGTTACCC
Statistics
Matches: 155, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
196 43 0.28
197 112 0.72
ACGTcount: A:0.20, C:0.32, G:0.23, T:0.25
Consensus pattern (196 bp):
CGTGTCCTCAGACCGTGTAACTCTCTATTTATGACGTCAACATGTCATCGAACCACACGGCCGGG
CTACACGCCCATGTCTCCTGGTCGTGTCCCTCACACGATTGAGACACACGACTGTGTCTCAGCCC
GTGCGGCCAACACTTAGGCTATTTTCCAAGCCTTGTCACAAGCCCGTGTGGACATAAGGGCATGC
T
Found at i:33307070 original size:33 final size:34
Alignment explanation
Indices: 33307005--33307073 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
33306995 ACAAGCCATA
*
33307005 ATCAATATGCGCCACATCTCATGGCCATATGCAT
1 ATCAATATGAGCCACATCTCATGGCCATATGCAT
33307039 ATCAATATGAGCCACATCTCAT-GCCATATGCAT
1 ATCAATATGAGCCACATCTCATGGCCATATGCAT
33307072 AT
1 AT
33307074 AACTCAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 13 0.38
34 21 0.62
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (34 bp):
ATCAATATGAGCCACATCTCATGGCCATATGCAT
Found at i:33308467 original size:49 final size:50
Alignment explanation
Indices: 33308400--33308525 Score: 148
Period size: 49 Copynumber: 2.5 Consensus size: 50
33308390 TCAAGTCGAT
* *
33308400 GCCATGTCCCAAACATGGTCTTACACTAAATATCGAAAT-TGAG-GCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTAAATATC-AAATATCAGTGCCGAC
* ** * * * *
33308449 GCCATGTCTCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAAATATCAAATATCAGTGCCGAC
33308499 GCCATGTCCCAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
33308526 GATACATCTC
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.05
49 31 0.48
50 31 0.48
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTAAATATCAAATATCAGTGCCGAC
Found at i:33308579 original size:46 final size:49
Alignment explanation
Indices: 33308351--33308663 Score: 223
Period size: 46 Copynumber: 6.6 Consensus size: 49
33308341 GTATAATACA
* * * *
33308351 GATGCCATGTCCC-GACATGGTCTTACACTGGC-T-CATC-CATCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGT-AGGCC
* ** *
33308397 GATGCCATGTCCCAAACATGGTCTTACACTAAATATCGAAAT-T-G-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-T--ACATCTCGTAGGCC
* * *
33308446 GACGCCATGTCTCAGACATGGTCTTACACTAGCTCTCACATATCCGT--GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CGTAGGCC
*
33308496 GATGCCATGTCCCAGACATGGTCTTACACT-G-ATACATCTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGTAGGCC
* * *
33308542 GATG-TATGTCCCAGACAT-GTCTTACACTGGCTTACATCTTG-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGTAGGCC
* * * * * * *
33308588 GATG-CACGTCCCAGGCAT-GTCTTACACTAGC-T-CTTGTCTGAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTC-GTAGGCC
33308634 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
33308664 GGCTCACAAA
Statistics
Matches: 214, Mismatches: 34, Indels: 36
0.75 0.12 0.13
Matches are distributed among these distances:
44 13 0.06
45 20 0.09
46 70 0.33
47 28 0.13
48 13 0.06
49 36 0.17
50 31 0.14
51 1 0.00
52 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGTAGGCC
Found at i:33311484 original size:26 final size:26
Alignment explanation
Indices: 33311448--33311499 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
33311438 TTTATCAGAA
33311448 GATAGATAGCCACTATAATACTTCCG
1 GATAGATAGCCACTATAATACTTCCG
33311474 GATAGATAGCCACTATAATACTTCCG
1 GATAGATAGCCACTATAATACTTCCG
33311500 AGAACAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (26 bp):
GATAGATAGCCACTATAATACTTCCG
Found at i:33314457 original size:47 final size:49
Alignment explanation
Indices: 33314376--33314612 Score: 195
Period size: 47 Copynumber: 4.9 Consensus size: 49
33314366 ACATAGGGTA
* *
33314376 CAATGTAGATGTCATGTCCCAGACATGGTCTTACACAGGCTCATC-CAT
1 CAATGTCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCATCACAT
* * *
33314424 CAAT-TCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAAT
1 CAATGTCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCATC-ACAT
** * * * * *
33314472 TGAGGCCAACGCCATGTCCTAGACATGGTCTTACACTA-GCTC-TCACATAT
1 CAATGTCGATGCCATGTCCCAGACATGGTCTTACAC-AGGCTCATCAC--AT
** * * *
33314522 CCGTGCCAATGCCATGTCCCAGACAT-GTCTTACACTA-GCTC-TCGTC-T
1 CAATGTCGATGCCATGTCCCAGACATGGTCTTACAC-AGGCTCATC-ACAT
*
33314569 CAATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT
1 CAATGTCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCAT
33314613 AAATAACTCG
Statistics
Matches: 151, Mismatches: 27, Indels: 21
0.76 0.14 0.11
Matches are distributed among these distances:
46 3 0.02
47 55 0.36
48 21 0.14
49 49 0.32
50 23 0.15
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (49 bp):
CAATGTCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCATCACAT
Found at i:33314552 original size:49 final size:49
Alignment explanation
Indices: 33314388--33314610 Score: 203
Period size: 49 Copynumber: 4.6 Consensus size: 49
33314378 ATGTAGATGT
* * *
33314388 CATGTCCCAGACATGGTCTTACAC-AGGCTCATC-CA-TCAAT-TCGATGC
1 CATGTCCCAGACATGGTCTTACACTA-GCTC-TCACATTCAGTGCCAATGC
* * * *
33314435 CATGTCCCAGACATGGTCTTACACT-GACTATCGAAATTGAG-GCCAACGC
1 CATGTCCCAGACATGGTCTTACACTAG-CTCTC-ACATTCAGTGCCAATGC
* *
33314484 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCAATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-TCAGTGCCAATGC
* * * *
33314534 CATGTCCCAGACAT-GTCTTACACTAGCTCT--CGTCTCAATGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-TCAGTGCCAATGC
*
33314581 CATGTCCCAGACATGGTCTTACACTGGCTC
1 CATGTCCCAGACATGGTCTTACACTAGCTC
33314611 ATAAATAACT
Statistics
Matches: 145, Mismatches: 21, Indels: 19
0.78 0.11 0.10
Matches are distributed among these distances:
46 3 0.02
47 51 0.35
48 18 0.12
49 52 0.36
50 21 0.14
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (49 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCACATTCAGTGCCAATGC
Found at i:33319845 original size:29 final size:27
Alignment explanation
Indices: 33319745--33319845 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 27
33319735 GTATAATAAG
33319745 CCCGCACACTTAGTGCT-TAATAGTCAAA
1 CCCGCACACTTAGTGCTATAA-A-TCAAA
* *
33319773 CTCACACACTTAGTGCTATATAATCAAA
1 CCCGCACACTTAGTGCTATA-AATCAAA
* *
33319801 CTCGCACACTTAGTGCTATACAATTCGAA
1 CCCGCACACTTAGTGCTATA-AA-TCAAA
33319830 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
33319846 CAATCTCATG
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
28 41 0.64
29 22 0.34
30 1 0.02
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.26
Consensus pattern (27 bp):
CCCGCACACTTAGTGCTATAAATCAAA
Found at i:33329895 original size:39 final size:39
Alignment explanation
Indices: 33329756--33329936 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
33329746 GTTCAAAACA
* * ** * *
33329756 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
33329796 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
33329836 CCTTC-GGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
33329874 CCTTCGGGCTTAGCCCGGATATCATAATTTGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
33329913 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
33329937 CTCGACATTC
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 33 0.26
39 56 0.44
40 37 0.29
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:33333228 original size:40 final size:40
Alignment explanation
Indices: 33333169--33333337 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
33333159 CGGGACTTTA
* * *
33333169 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
33333209 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
33333249 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
33333289 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
33333329 CCCGGATAT
1 CCCGGATAT
33333338 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:33341125 original size:40 final size:40
Alignment explanation
Indices: 33341066--33341234 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
33341056 CGGGACTTTA
* * *
33341066 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
33341106 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
33341146 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
33341186 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
33341226 CCCGGATAT
1 CCCGGATAT
33341235 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:33346376 original size:30 final size:29
Alignment explanation
Indices: 33346282--33346383 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
33346272 TATAGTGAAT
* * *
33346282 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
33346311 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
33346339 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
33346369 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
33346384 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:33353209 original size:15 final size:15
Alignment explanation
Indices: 33353189--33353217 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33353179 AAAGTGTATG
33353189 TATGTGATAAGGCCA
1 TATGTGATAAGGCCA
33353204 TATGTGATAAGGCC
1 TATGTGATAAGGCC
33353218 GAATGGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TATGTGATAAGGCCA
Found at i:33353238 original size:62 final size:62
Alignment explanation
Indices: 33353141--33353261 Score: 242
Period size: 62 Copynumber: 2.0 Consensus size: 62
33353131 AAGTGTATGT
33353141 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
33353203 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAG
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAG
33353262 ACCGAATGGC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (62 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
Found at i:33353323 original size:49 final size:49
Alignment explanation
Indices: 33353203--33353488 Score: 433
Period size: 47 Copynumber: 6.0 Consensus size: 49
33353193 TGATAAGGCC
33353203 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG-
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGT
*
33353251 -TATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAAAGTGTATGT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGT
**
33353299 ATATGTGAGCAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGT
*
33353348 ATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATG-
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGT
*
33353396 -TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTATAT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGT
* * * *
33353442 ATATATGATAAGGCCGAATGGTCAATGGGATGGAA-GTGGAAGTGTAT
1 ATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTAT
33353489 AACTGTGATA
Statistics
Matches: 218, Mismatches: 13, Indels: 13
0.89 0.05 0.05
Matches are distributed among these distances:
45 4 0.02
47 117 0.54
48 3 0.01
49 94 0.43
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (49 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGT
Found at i:33353383 original size:145 final size:143
Alignment explanation
Indices: 33353203--33353488 Score: 459
Period size: 145 Copynumber: 2.0 Consensus size: 143
33353193 TGATAAGGCC
33353203 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGACCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGACCGAA
* * *
33353268 TGGCCAATGTGATGAATGTGAAAGTGTATGTATATG-TGAGCAGGCCGAATGGCCAATGTGAT-G
66 TGGCCAATGTGATGAATGTGAAAGTATATATATATGAT-A--AGGCCGAATGGCCAATGGGATGG
33353331 AATGTGAAAGTGTATGT
128 AA-GTGAAAGTGTATGT
* *
33353348 ATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGACCGAA
*
33353413 TGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGTCAATGGGATGGAAG
66 TGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCAATGGGATGGAAG
*
33353478 TGGAAGTGTAT
131 TGAAAGTGTAT
33353489 AACTGTGATA
Statistics
Matches: 132, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
143 30 0.23
144 3 0.02
145 98 0.74
146 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (143 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGACCGAA
TGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCAATGGGATGGAAG
TGAAAGTGTATGT
Found at i:33355396 original size:40 final size:40
Alignment explanation
Indices: 33355341--33355654 Score: 495
Period size: 40 Copynumber: 7.9 Consensus size: 40
33355331 TTCAGTATGT
33355341 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* * *
33355381 TATATCCAGGCTAAGTCCCAAAGAGCATTCATGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
33355421 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
33355461 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* * *
33355501 TGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* * *
33355541 TGTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* * *
33355581 TGTATCCGGGCCAAGTCTCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* *
33355621 TGTATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
33355655 TGGACAAAAT
Statistics
Matches: 256, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 11 0.04
40 245 0.96
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
Found at i:33359788 original size:15 final size:15
Alignment explanation
Indices: 33359768--33359796 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33359758 AAAGTGTATG
33359768 TATGTGATAAGGCCA
1 TATGTGATAAGGCCA
33359783 TATGTGATAAGGCC
1 TATGTGATAAGGCC
33359797 GAATGGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TATGTGATAAGGCCA
Found at i:33359817 original size:62 final size:62
Alignment explanation
Indices: 33359720--33359843 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
33359710 AAGTGTATGT
33359720 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
33359782 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
33359844 GAATGGCCAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (62 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
Found at i:33359894 original size:96 final size:96
Alignment explanation
Indices: 33359782--33360114 Score: 532
Period size: 96 Copynumber: 3.5 Consensus size: 96
33359772 TGATAAGGCC
33359782 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAA
33359847 TGGCCAATGTGATGAATGTGAAAGTGTATGT
66 TGGCCAATGTGATGAATGTGAAAGTGTATGT
*
33359878 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCTG
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG--TATGTGATAAGGCCG
33359943 AATGGCCAATGTGATGAATGTGAAAGTGTATG-
64 AATGGCCAATGTGATGAATGTGAAAGTGTATGT
33359975 -TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAA
* *
33360039 TGGCCAATGTGATGAATGT-AAA-AGTATAT
66 TGGCCAATGTGATGAATGTGAAAGTGTATGT
* * * * *
33360068 ATATATGATAAGGCTGAATGGTCAATGGGATGGAA-GTGGAAGTGTAT
1 ATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTAT
33360115 AACTGTGATA
Statistics
Matches: 223, Mismatches: 9, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
92 4 0.02
93 3 0.01
94 72 0.32
95 3 0.01
96 95 0.43
98 46 0.21
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (96 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAA
TGGCCAATGTGATGAATGTGAAAGTGTATGT
Found at i:33359902 original size:49 final size:48
Alignment explanation
Indices: 33359782--33360126 Score: 533
Period size: 47 Copynumber: 7.2 Consensus size: 48
33359772 TGATAAGGCC
33359782 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
33359830 -TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
33359877 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 -ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
*
33359926 TATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 -ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
33359975 -TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
33360022 -TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTATAT-
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* * * * *
33360068 ATATATGATAAGGCTGAATGGTCAATGGGATGGAA-GTGGAAGTGTAT-
1 ATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTATG
33360115 A-ACTGTGATAAG
1 ATA-TGTGATAAG
33360127 TCCCGAAGGA
Statistics
Matches: 280, Mismatches: 12, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
46 1 0.00
47 181 0.65
48 3 0.01
49 95 0.34
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.28
Consensus pattern (48 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
Found at i:33359944 original size:27 final size:27
Alignment explanation
Indices: 33359865--33359944 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
33359855 GTGATGAATG
33359865 TGAAAGTGTATGTATATGTGATAAGGC
1 TGAAAGTGTATGTATATGTGATAAGGC
* * *
33359892 CG-AA-TG---GCCA-ATGTGATGAATG-
1 TGAAAGTGTATG-TATATGTGAT-AAGGC
33359914 TGAAAGTGTATGTATATGTGATAAGGC
1 TGAAAGTGTATGTATATGTGATAAGGC
33359941 TGAA
1 TGAA
33359945 TGGCCAATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 18
0.61 0.10 0.29
Matches are distributed among these distances:
22 9 0.24
23 6 0.16
24 2 0.05
25 2 0.05
26 6 0.16
27 13 0.34
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (27 bp):
TGAAAGTGTATGTATATGTGATAAGGC
Found at i:33359979 original size:25 final size:25
Alignment explanation
Indices: 33359951--33360029 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
33359941 TGAATGGCCA
33359951 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
* * * *
33359976 ATGTGAT-AAGGCCGAATG-GCCA---
1 ATGTGATGAATG-TGAAAGTG-TATGT
33359998 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
33360023 ATGTGAT
1 ATGTGAT
33360030 AAGGCCGAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
22 12 0.31
23 4 0.10
24 4 0.10
25 19 0.49
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATGT
Found at i:33366240 original size:50 final size:50
Alignment explanation
Indices: 33366063--33366247 Score: 211
Period size: 50 Copynumber: 3.8 Consensus size: 50
33366053 GTTATAGATT
* * * * * *
33366063 CCATGTCCCAGACATGGTCTTACACTAGCTCTTATCTATCG-GTGTCGATA
1 CCATGTCCCAGACATGGTCTTACACTAACTCTCATATCTCGAG-GCCGATG
* * * *
33366113 CCATGTCCTAGACATGGTCTTACACTGA-T-ACATA--TC-AAGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAACTCTCATATCTCGAGGCCGATG
* *
33366158 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAACTCTCATATCTCGAGGCCGATG
33366208 CCATGTCCCAGACATGGTCTTACACTAACTCTCATATCTC
1 CCATGTCCCAGACATGGTCTTACACTAACTCTCATATCTC
33366248 CCTAGTATCA
Statistics
Matches: 112, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 29 0.26
46 3 0.03
47 4 0.04
48 2 0.02
49 3 0.03
50 71 0.63
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTAACTCTCATATCTCGAGGCCGATG
Found at i:33369685 original size:40 final size:40
Alignment explanation
Indices: 33369625--33369759 Score: 243
Period size: 40 Copynumber: 3.4 Consensus size: 40
33369615 CGGATGTAAC
*
33369625 AACCAGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
33369665 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
* *
33369705 AACCTGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
33369745 AACCCGCACGAATGC
1 AACCCGCACGAATGC
33369760 TATGTACATA
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
Found at i:33375950 original size:40 final size:40
Alignment explanation
Indices: 33375873--33376053 Score: 240
Period size: 40 Copynumber: 4.5 Consensus size: 40
33375863 ACCCAAGTAT
* * *
33375873 CTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
33375912 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
33375952 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
33375992 CTTCGGGACTTAGCCCGGGTATAGTAACTTGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
33376032 CTTCGAGACTTAGCCTGGATAT
1 CTTCGGGACTTAGCCCGGATAT
33376054 CATCTGAATA
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 10 0.08
40 115 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:33378780 original size:27 final size:27
Alignment explanation
Indices: 33378750--33378805 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
33378740 AAAACCGTAA
* * *
33378750 TAAGGGAAAAAATTACCGAAATGCCCC
1 TAAGGGAAAAAATAACCAAAATACCCC
**
33378777 TAAGGGCGAAAATAACCAAAATACCCC
1 TAAGGGAAAAAATAACCAAAATACCCC
33378804 TA
1 TA
33378806 TGTGTTGAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.46, C:0.23, G:0.16, T:0.14
Consensus pattern (27 bp):
TAAGGGAAAAAATAACCAAAATACCCC
Found at i:33383222 original size:24 final size:24
Alignment explanation
Indices: 33383190--33383271 Score: 83
Period size: 24 Copynumber: 3.4 Consensus size: 24
33383180 CTTCATCGTC
* *
33383190 TTCACCTTCACCTTGACCCCCATA
1 TTCATCTTCACCTTAACCCCCATA
* *
33383214 TTCATCTTCATCTTAACCCCCATG
1 TTCATCTTCACCTTAACCCCCATA
* * ** *
33383238 TTCATCTTCATCTCAACCTTCATC
1 TTCATCTTCACCTTAACCCCCATA
33383262 TTCATCTTCA
1 TTCATCTTCA
33383272 TCACCACCCC
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.21, C:0.39, G:0.02, T:0.38
Consensus pattern (24 bp):
TTCATCTTCACCTTAACCCCCATA
Found at i:33383272 original size:24 final size:23
Alignment explanation
Indices: 33383207--33383298 Score: 103
Period size: 24 Copynumber: 3.9 Consensus size: 23
33383197 TCACCTTGAC
* *
33383207 CCCCATATTCATCTTCATCTTAA
1 CCCCATCTTCATCTTCATCTCAA
*
33383230 CCCCCATGTTCATCTTCATCTCAA
1 -CCCCATCTTCATCTTCATCTCAA
* * *
33383254 CCTTCATCTTCATCTTCATCACCA
1 CC-CCATCTTCATCTTCATCTCAA
*
33383278 CCCCATCTTCATCTTTATCTC
1 CCCCATCTTCATCTTCATCTC
33383299 CTTCCATGGT
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
23 18 0.31
24 40 0.69
ACGTcount: A:0.21, C:0.40, G:0.01, T:0.38
Consensus pattern (23 bp):
CCCCATCTTCATCTTCATCTCAA
Found at i:33383292 original size:6 final size:6
Alignment explanation
Indices: 33383214--33383273 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
33383204 GACCCCCATA
* * ** * *
33383214 TTCATC TTCATC TTAACC CCCATG TTCATC TTCATC -TCAACC TTCATC
1 TTCATC TTCATC TTCATC TTCATC TTCATC TTCATC TTC-ATC TTCATC
33383262 TTCATC TTCATC
1 TTCATC TTCATC
33383274 ACCACCCCAT
Statistics
Matches: 40, Mismatches: 12, Indels: 4
0.71 0.21 0.07
Matches are distributed among these distances:
5 2 0.05
6 36 0.90
7 2 0.05
ACGTcount: A:0.20, C:0.37, G:0.02, T:0.42
Consensus pattern (6 bp):
TTCATC
Found at i:33389821 original size:22 final size:20
Alignment explanation
Indices: 33389782--33389828 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
33389772 TGTAAAGTTG
33389782 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
33389801 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
33389824 ATAAT
1 ATAAT
33389829 TATCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:33392027 original size:24 final size:23
Alignment explanation
Indices: 33392000--33392111 Score: 81
Period size: 23 Copynumber: 4.8 Consensus size: 23
33391990 AGATCGTAGA
33392000 AGCTTACTATTATCAGCTCAT-TGG
1 AGCTTACTATT-TCAGCTCATAT-G
**
33392024 AGCTTACCGTTTCAGCTCATATG
1 AGCTTACTATTTCAGCTCATATG
* * *
33392047 AGCTTACT-GTTCCGCTTGATA-G
1 AGCTTACTATTTCAGC-TCATATG
33392069 AGCTTA-TCATTTCAGCTCAGTA-G
1 AGCTTACT-ATTTCAGCTCA-TATG
33392092 AGCTTACTATTCATCAGCTC
1 AGCTTACTATT--TCAGCTC
33392112 GGGTGGAGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
21 1 0.01
22 14 0.20
23 38 0.54
24 11 0.15
25 7 0.10
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (23 bp):
AGCTTACTATTTCAGCTCATATG
Found at i:33393736 original size:20 final size:20
Alignment explanation
Indices: 33393705--33393742 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
33393695 TTTGTTTTTT
33393705 ATTTTACTTTTAATTTACTAA
1 ATTTTACTTTT-ATTTACTAA
33393726 ATTTT-CTTTTATTTACT
1 ATTTTACTTTTATTTACT
33393743 TCTGGCAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 5 0.29
21 5 0.29
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTTTACTTTTATTTACTAA
Found at i:33399384 original size:31 final size:31
Alignment explanation
Indices: 33399336--33399481 Score: 240
Period size: 31 Copynumber: 4.7 Consensus size: 31
33399326 TTAGTCTTGA
*
33399336 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
33399366 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
33399397 CATATCACTGGGCCGAAACCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
33399428 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
33399459 CATATCACTGCGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
33399482 ACTGTAAACG
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.05
31 103 0.95
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:33399552 original size:42 final size:42
Alignment explanation
Indices: 33399505--33399596 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
33399495 TAGCCCTTAG
*
33399505 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
33399547 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
33399589 GCCCATTT
1 GCCCATTT
33399597 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:33399777 original size:25 final size:25
Alignment explanation
Indices: 33399744--33399813 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
33399734 CTCTTTTAAT
*
33399744 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
33399769 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
33399794 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
33399814 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:33400770 original size:27 final size:27
Alignment explanation
Indices: 33400740--33400953 Score: 130
Period size: 27 Copynumber: 7.9 Consensus size: 27
33400730 GTAAACCTAC
* *
33400740 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTAT
* *
33400767 AAACCAATGGTATTTTTA-TAATTTTTAG
1 AAACCAAGGGTA-TTTTAGTAA-TTTTAT
* *
33400795 AAAGTCAAGGGTATTTTTA-TAATTTTGT
1 AAA-CCAAGGGTA-TTTTAGTAATTTTAT
* * * *
33400823 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTAT
*** * * *
33400850 AAATTGAGGGTATTTTGGTAATTTCAA
1 AAACCAAGGGTATTTTAGTAATTTTAT
* *
33400877 AAACC-AGTGGTATTTCAGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTAT
* * *
33400904 AAA-CTAGAGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTAT
* * *
33400931 AAACTAGGGGTATTTTGGTAATT
1 AAACCAAGGGTATTTTAGTAATT
33400954 CTATCCTACA
Statistics
Matches: 151, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
26 7 0.05
27 109 0.72
28 19 0.13
29 16 0.11
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTAT
Found at i:33400889 original size:54 final size:54
Alignment explanation
Indices: 33400827--33400953 Score: 175
Period size: 54 Copynumber: 2.4 Consensus size: 54
33400817 TTTTGTAAAT
*
33400827 CAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTTGGTAATTTCAAAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAGA-GGTATTTTGGTAATTTCAAAAAC
* ** * *
33400881 CAGTGGTATTTCAGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTCAAAAAC
*
33400935 TAGGGGTATTTTGGTAATT
1 CAGGGGTATTTTGGTAATT
33400954 CTATCCTACA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
54 59 0.95
55 3 0.05
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTCAAAAAC
Found at i:33400970 original size:54 final size:54
Alignment explanation
Indices: 33400827--33400986 Score: 144
Period size: 54 Copynumber: 3.0 Consensus size: 54
33400817 TTTTGTAAAT
** * * *
33400827 CAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTTGGTAATTTCAAAAAC
1 CAGGGGTATTTCAGTAATTCTACAAACTAG-GGGTATTTTGGTAATTTCACAAAC
* * * *
33400881 CAGTGGTATTTCAGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTCAGTAATTCTACAAACTAGGGGTATTTTGGTAATTTCACAAAC
* ** ** **
33400935 TAGGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTCAGTAATTCTA-CAAACTAGGGGTATTTTGGTAATTTCACAA
33400987 TCGAGGGTAA
Statistics
Matches: 86, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
54 81 0.94
55 5 0.06
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTCAGTAATTCTACAAACTAGGGGTATTTTGGTAATTTCACAAAC
Found at i:33400970 original size:81 final size:81
Alignment explanation
Indices: 33400831--33400986 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
33400821 GTAAATCAGG
* *
33400831 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCAAAAACCAGTGGTATTTCAGT
1 GGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCAAAAACCAGGGGTATTTCAGT
*
33400896 AATTTTACAAACTAGA
66 AATTTCACAAACTAGA
* **
33400912 GGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTC-TATCCTACAGGGGTATTTC
1 GGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTTGGTAATTTCAAAAAC--CAGGGGTATTTC
33400974 AGTAATTTCACAA
63 AGTAATTTCACAA
33400987 TCGAGGGTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
79 2 0.03
80 3 0.05
81 59 0.89
82 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCAAAAACCAGGGGTATTTCAGT
AATTTCACAAACTAGA
Found at i:33400972 original size:27 final size:27
Alignment explanation
Indices: 33400828--33400956 Score: 136
Period size: 27 Copynumber: 4.8 Consensus size: 27
33400818 TTTGTAAATC
*
33400828 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTCTACAAACT
* * *
33400854 TGAGGGTATTTTGGTAATT-TCAAAAACC
1 AG-GGGTATTTTGGTAATTCT-ACAAACT
* ** *
33400882 AGTGGTATTTCAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACAAACT
* *
33400909 AGAGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACAAACT
33400936 AGGGGTATTTTGGTAATTCTA
1 AGGGGTATTTTGGTAATTCTA
33400957 TCCTACAGGG
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.02
27 81 0.95
28 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTCTACAAACT
Found at i:33400993 original size:27 final size:26
Alignment explanation
Indices: 33400824--33400993 Score: 103
Period size: 27 Copynumber: 6.3 Consensus size: 26
33400814 TAATTTTGTA
*
33400824 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTTGGTAATTTCAC
* *
33400850 AAAT-TGAGGGTATTTTGGTAATTTCAAA
1 -AATCAG-GGGTATTTTGGTAATTTC-AC
* * ** *
33400878 AACCAGTGGTATTTCAGTAATTTTAC
1 AATCAGGGGTATTTTGGTAATTTCAC
* * *
33400904 AAACTAGAGGTATTTTGGTAATTTTAC
1 AATC-AGGGGTATTTTGGTAATTTCAC
*
33400931 AAACTAGGGGTATTTTGGTAA-TTCTATC
1 AATC-AGGGGTATTTTGGTAATTTC-A-C
* **
33400959 -CTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CAGGGGTATTTTGGTAATTTCAC
33400985 AATCGAGGG
1 AATC-AGGG
33400994 TAAAACGGTA
Statistics
Matches: 112, Mismatches: 21, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
26 9 0.08
27 96 0.86
28 7 0.06
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (26 bp):
AATCAGGGGTATTTTGGTAATTTCAC
Found at i:33401066 original size:27 final size:27
Alignment explanation
Indices: 33400985--33401140 Score: 163
Period size: 27 Copynumber: 5.8 Consensus size: 27
33400975 GTAATTTCAC
*
33400985 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
33401012 AA-CTGATGGT-AAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
33401038 AATCGAGGGTAAAACGATAAATCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
33401065 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
33401092 AATTGAGGGTAAAACGATAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
33401119 AATTGAGGGTAAAACGGTAATT
1 AATCGAGGGTAAAACGGTAATT
33401141 TGGTAAACTA
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 23 0.21
27 87 0.79
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:33401104 original size:54 final size:54
Alignment explanation
Indices: 33400985--33401140 Score: 206
Period size: 54 Copynumber: 2.9 Consensus size: 54
33400975 GTAATTTCAC
* * * * * *
33400985 AATCGAGGGTAAAACGGTAATTTTGTAAACTGATGGT-AAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATA
*
33401038 AATCGAGGGTAAAACGATAAATCTGTAAATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATA
* ** *
33401092 AATTGAGGGTAAAACGATAATTCTACAAATTGAGGGTAAAACGGTAATT
1 AATCGAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAATGGTAATT
33401141 TGGTAAACTA
Statistics
Matches: 90, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 32 0.36
54 58 0.64
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATA
Found at i:33402990 original size:40 final size:39
Alignment explanation
Indices: 33402953--33403134 Score: 210
Period size: 39 Copynumber: 4.6 Consensus size: 39
33402943 GCTACTCGTT
*
33402953 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
* *
33402993 CAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
* *
33403032 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* * * *
33403071 C-AATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
33403111 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
33403135 ACATCATTCG
Statistics
Matches: 122, Mismatches: 14, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
37 2 0.02
38 17 0.14
39 55 0.45
40 43 0.35
41 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:33411256 original size:40 final size:39
Alignment explanation
Indices: 33411149--33411306 Score: 193
Period size: 40 Copynumber: 4.1 Consensus size: 39
33411139 TAGACTACAG
33411149 AGCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTT
1 AGCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTT
33411187 A-CC-GATTTAGTAACTC-CACAAATGCCTTCGGATGCTT
1 AGCCGGATTTAGTAACTCGCACAAATGCCTTCGGAT-CTT
* *
33411224 AGCCGGAATTAGTAACTCGCACGAATGCCTTCGGATCTT
1 AGCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTT
* * *
33411263 AGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGA-CTT
1 AG-CCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGATCTT
33411303 AGCC
1 AGCC
33411307 CGGACATCAT
Statistics
Matches: 105, Mismatches: 7, Indels: 15
0.83 0.06 0.12
Matches are distributed among these distances:
35 16 0.15
36 13 0.12
37 6 0.06
38 3 0.03
39 19 0.18
40 38 0.36
41 10 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AGCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTT
Found at i:33419672 original size:39 final size:40
Alignment explanation
Indices: 33419628--33419756 Score: 129
Period size: 40 Copynumber: 3.3 Consensus size: 40
33419618 CGGAATATAA
33419628 CCGGATATAATCACGT-GCACAAATG-CTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
33419667 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
33419707 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTA-A
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
33419746 CCGGATATAAT
1 CCGGATATAAT
33419757 TTCCAGCCAT
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
38 1 0.01
39 27 0.39
40 42 0.60
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:33426798 original size:39 final size:39
Alignment explanation
Indices: 33426755--33426906 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
33426745 TATGGTAACC
* *
33426755 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
33426794 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
33426833 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
33426872 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
33426907 TCGACATTCA
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 96 0.91
40 9 0.09
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:33434613 original size:40 final size:39
Alignment explanation
Indices: 33434445--33434615 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
33434435 AGAAATTGAA
* *
33434445 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
33434485 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
33434525 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
33434565 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
33434605 TGATATCCGGG
1 TGATATCCGGG
33434616 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:33442649 original size:40 final size:39
Alignment explanation
Indices: 33442481--33442651 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
33442471 AGAAATTGAA
* *
33442481 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
33442521 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
33442561 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
33442601 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
33442641 TGATATCCGGG
1 TGATATCCGGG
33442652 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:33447960 original size:50 final size:52
Alignment explanation
Indices: 33447858--33447966 Score: 134
Period size: 50 Copynumber: 2.1 Consensus size: 52
33447848 ATGAGTTATT
**
33447858 TAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATGGGAGTTACA
1 TAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATGAAAGTTACA
* * * *
33447910 TAATGCAAGTCATT-ATTT-ATGATGCATACTT-AACTAATATGAAAGTTACA
1 TAATGCAAGAC-TTAATTTAATAATGCAGACTTAAACTAACATGAAAGTTACA
33447960 TAATGCA
1 TAATGCA
33447967 TTACTTTATT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
50 23 0.46
51 11 0.22
52 14 0.28
53 2 0.04
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (52 bp):
TAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATGAAAGTTACA
Found at i:33449787 original size:18 final size:18
Alignment explanation
Indices: 33449745--33449789 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
33449735 TGTACTCTTC
33449745 CTTTTCTTTCTTCAATCT
1 CTTTTCTTTCTTCAATCT
*
33449763 CTCTTTCTTT-TTCAACTTT
1 CT-TTTCTTTCTTCAA-TCT
33449782 CTTTTCTT
1 CTTTTCTT
33449790 GCTCACATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.09, C:0.27, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTCTTCAATCT
Found at i:33449888 original size:20 final size:20
Alignment explanation
Indices: 33449856--33449902 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
33449846 TTTTTATTTC
33449856 CTTTTCTTTTTCT-TCCATGT
1 CTTTT-TTTTTCTCTCCATGT
* *
33449876 CTTTTTTTCTTCTCTCGATTT
1 CTTTTTTT-TTCTCTCCATGT
33449897 CTTTTT
1 CTTTTT
33449903 CTCGCTTCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 3 0.13
20 9 0.39
21 11 0.48
ACGTcount: A:0.04, C:0.23, G:0.04, T:0.68
Consensus pattern (20 bp):
CTTTTTTTTTCTCTCCATGT
Found at i:33451957 original size:23 final size:22
Alignment explanation
Indices: 33451910--33451964 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
33451900 TAAGGATGTG
*
33451910 TAATGCTCCCTTTAACTGATGA
1 TAATGCTCCCTTTAACTGAAGA
*
33451932 TAATAGCTCCTTTTAA-TGAAGAA
1 TAAT-GCTCCCTTTAACTGAAG-A
*
33451955 TAATGTTCCC
1 TAATGCTCCC
33451965 CCTTGTATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (22 bp):
TAATGCTCCCTTTAACTGAAGA
Found at i:33452098 original size:23 final size:21
Alignment explanation
Indices: 33452059--33452112 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
33452049 GACACTTGCA
*
33452059 ATTAAACATATTAAAACAAACAT
1 ATTAAACACATTAAAAC--ACAT
*
33452082 ATTAAACACATCT-AAACACTT
1 ATTAAACACAT-TAAAACACAT
33452103 ATTAAACACA
1 ATTAAACACA
33452113 AAAAAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 13 0.46
23 14 0.50
24 1 0.04
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.26
Consensus pattern (21 bp):
ATTAAACACATTAAAACACAT
Found at i:33452376 original size:50 final size:50
Alignment explanation
Indices: 33452312--33452437 Score: 198
Period size: 50 Copynumber: 2.5 Consensus size: 50
33452302 TGCAACCTTA
* *
33452312 AACTAACATGGGAGTTACATAATGCAAGTCATTATTGATGATGCTTATTT
1 AACTAACATGGGAGTTACATAATGCAAGCCATTATTGATGATGCTTACTT
* *
33452362 AACTAACATGGGAGTTACATAATACAAGCCATTATTTATGATGCTTACTT
1 AACTAACATGGGAGTTACATAATGCAAGCCATTATTGATGATGCTTACTT
**
33452412 AACTAACATGAAAGTTACATAATGCA
1 AACTAACATGGGAGTTACATAATGCA
33452438 TTACTTTATA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (50 bp):
AACTAACATGGGAGTTACATAATGCAAGCCATTATTGATGATGCTTACTT
Found at i:33454295 original size:18 final size:19
Alignment explanation
Indices: 33454248--33454297 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
33454238 TTTCTTGGAC
33454248 ACTTCCTTTTCTTTCTTCA
1 ACTTCCTTTTCTTTCTTCA
33454267 A--TCTCTCTTTCTTT-TTCA
1 ACTTC-CT-TTTCTTTCTTCA
33454285 ACTTCCTTTTCTT
1 ACTTCCTTTTCTT
33454298 GCTCACATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
17 2 0.07
18 13 0.48
19 10 0.37
20 2 0.07
ACGTcount: A:0.10, C:0.30, G:0.00, T:0.60
Consensus pattern (19 bp):
ACTTCCTTTTCTTTCTTCA
Found at i:33455930 original size:21 final size:22
Alignment explanation
Indices: 33455882--33455935 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
33455872 GACACCTGCA
33455882 ATTAAACACATTAAAACAAACAT
1 ATTAAACACATTAAAAC-AACAT
*
33455905 ATTAAACACATCT-AAAC-ACTT
1 ATTAAACACAT-TAAAACAACAT
33455926 ATTAAACACA
1 ATTAAACACA
33455936 AAAAAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 13 0.45
23 15 0.52
24 1 0.03
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (22 bp):
ATTAAACACATTAAAACAACAT
Found at i:33456530 original size:2 final size:2
Alignment explanation
Indices: 33456523--33456558 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
33456513 CCTACTTAAC
33456523 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33456559 GGCACTCAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33457178 original size:20 final size:20
Alignment explanation
Indices: 33457148--33457195 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
33457138 GCATCAATGA
*
33457148 TGCATAACAGAGGCACCGAAG
1 TGCA-AACAGAGGCACCAAAG
*
33457169 TGCAAACAGAGGCAGCAAAG
1 TGCAAACAGAGGCACCAAAG
33457189 TGCAAAC
1 TGCAAAC
33457196 CAGTACAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.42, C:0.23, G:0.27, T:0.08
Consensus pattern (20 bp):
TGCAAACAGAGGCACCAAAG
Found at i:33462759 original size:49 final size:49
Alignment explanation
Indices: 33462706--33462829 Score: 185
Period size: 49 Copynumber: 2.5 Consensus size: 49
33462696 CTGGTACGCA
* * * ** *
33462706 TAGTAGCCAGAACTTAGTACTACACTTGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGATACACG
*
33462755 TAGTAACCTGCACTTAGTACTACACATGCAACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGATACACG
33462804 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
33462830 CGTGACCTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 67 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGATACACG
Found at i:33463031 original size:27 final size:27
Alignment explanation
Indices: 33463001--33463054 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
33462991 TCATACAACC
* *
33463001 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
33463028 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
33463055 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:33471312 original size:39 final size:39
Alignment explanation
Indices: 33471258--33471343 Score: 154
Period size: 39 Copynumber: 2.2 Consensus size: 39
33471248 TGGCAATTAA
33471258 CCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAGG
1 CCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAGG
* *
33471297 CCTGCTAGGTATAAACCTAAATTTATCATCGGCACGAGG
1 CCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAGG
33471336 CCTGCTAG
1 CCTGCTAG
33471344 ACATTAAGTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAGG
Found at i:33474466 original size:28 final size:28
Alignment explanation
Indices: 33474426--33474481 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
33474416 GGTACGAAAC
33474426 ACTAAGGAAGATGATGCCTTATTTTTTT
1 ACTAAGGAAGATGATGCCTTATTTTTTT
33474454 ACTAAGGAAGATGATGCCTTATTTTTTT
1 ACTAAGGAAGATGATGCCTTATTTTTTT
33474482 TACTTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (28 bp):
ACTAAGGAAGATGATGCCTTATTTTTTT
Found at i:33476012 original size:39 final size:39
Alignment explanation
Indices: 33475958--33476033 Score: 118
Period size: 39 Copynumber: 1.9 Consensus size: 39
33475948 CTTACTCAAT
*
33475958 TTAGCATAAAAC-TTTTTCTCACGAAAAATCTGTAGAAAC
1 TTAGCATAAAACTTTTTTCTCAC-AAAAATATGTAGAAAC
*
33475997 TTAGCATAAAACTTTTTTCTCACAAGAATATGTAGAA
1 TTAGCATAAAACTTTTTTCTCACAAAAATATGTAGAA
33476034 CAACTTTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 24 0.71
40 10 0.29
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.33
Consensus pattern (39 bp):
TTAGCATAAAACTTTTTTCTCACAAAAATATGTAGAAAC
Found at i:33492155 original size:48 final size:48
Alignment explanation
Indices: 33492081--33492204 Score: 151
Period size: 48 Copynumber: 2.6 Consensus size: 48
33492071 AAGTGTCTCG
* * *
33492081 CGACAT-CAAACCCGATGTTGCAACATCATTATCTTGCAGAGGTGTCA
1 CGACATGCAACCCCGATGTCGCAACATCAGTATCTTGCAGAGGTGTCA
** *
33492128 CGACATGCAACCCCGATGTCGTGACATCAGTATCTTGTAGAGGTGTCA
1 CGACATGCAACCCCGATGTCGCAACATCAGTATCTTGCAGAGGTGTCA
* * * *
33492176 CGACATGGAACCTCAATGTCGCAATATCA
1 CGACATGCAACCCCGATGTCGCAACATCA
33492205 CTACAAATTT
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
47 6 0.09
48 58 0.91
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (48 bp):
CGACATGCAACCCCGATGTCGCAACATCAGTATCTTGCAGAGGTGTCA
Found at i:33495834 original size:27 final size:27
Alignment explanation
Indices: 33495804--33495858 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
33495794 AGCTGCCTGA
*
33495804 AACAGTAAATGTGGCAAAGCCACCAGT
1 AACAGTAAATGTGACAAAGCCACCAGT
* * *
33495831 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGTAAATGTGACAAAGCCACCAGT
33495858 A
1 A
33495859 CAATACTGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.18
Consensus pattern (27 bp):
AACAGTAAATGTGACAAAGCCACCAGT
Found at i:33496047 original size:27 final size:27
Alignment explanation
Indices: 33496017--33496079 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
33496007 ACCATACAGG
33496017 TACCCTACAAGGGAATTACTG-TCATTT
1 TACCCTACAAGGGAATTAC-GATCATTT
* *
33496044 TACCCT-CTAGGGGCATTACGATCATTT
1 TACCCTAC-AAGGGAATTACGATCATTT
*
33496071 TACCTTACA
1 TACCCTACA
33496080 GGGGTAGTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
26 2 0.07
27 27 0.90
28 1 0.03
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (27 bp):
TACCCTACAAGGGAATTACGATCATTT
Found at i:33496082 original size:27 final size:27
Alignment explanation
Indices: 33496038--33496129 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 27
33496028 GGAATTACTG
* * *
33496038 TCATTTTACCCT-CTAGGGGCATTACGA
1 TCATTTTACCTTAC-AGGGGTATTGCGA
* * *
33496065 TCATTTTACCTTACAGGGGTAGTGTGG
1 TCATTTTACCTTACAGGGGTATTGCGA
*
33496092 TCATTTTACCCTTA-AGGGGTATTGCAA
1 TCATTTTA-CCTTACAGGGGTATTGCGA
33496119 TCATTTTACCT
1 TCATTTTACCT
33496130 ATTTTTGGGT
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.06
27 44 0.83
28 6 0.11
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (27 bp):
TCATTTTACCTTACAGGGGTATTGCGA
Found at i:33501514 original size:29 final size:28
Alignment explanation
Indices: 33501459--33501573 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 28
33501449 GTGAGCATGA
* * *
33501459 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
33501487 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
33501516 ATATACAGGTGATTTGGGCCTAATAGGCG
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
33501545 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
33501573 A
1 A
33501574 GATACAAGAA
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 25 0.35
29 47 0.65
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:33505584 original size:40 final size:40
Alignment explanation
Indices: 33505499--33505649 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
33505489 AATTGAATGA
* * * *
33505499 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
33505539 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
33505580 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
33505619 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
33505650 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:33505663 original size:40 final size:40
Alignment explanation
Indices: 33505536--33505665 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
33505526 ATGCTGGAAA
* * *
33505536 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
33505576 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
33505616 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
33505656 TTATATCCGG
1 TTATATCCGG
33505666 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:33505664 original size:80 final size:80
Alignment explanation
Indices: 33505498--33505665 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
33505488 AAATTGAATG
* *
33505498 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
33505563 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
33505578 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
33505641 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
33505658 ATATCCGG
1 ATATCCGG
33505666 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:33513562 original size:40 final size:40
Alignment explanation
Indices: 33513477--33513627 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
33513467 AATTGAATGA
* * * **
33513477 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
33513517 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
33513558 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
33513597 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
33513628 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:33513641 original size:40 final size:40
Alignment explanation
Indices: 33513514--33513643 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
33513504 ATGCTGGAAA
* * *
33513514 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
33513554 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
33513594 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
33513634 TTATATCCGG
1 TTATATCCGG
33513644 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:33517230 original size:28 final size:29
Alignment explanation
Indices: 33517120--33517234 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
33517110 GTGAGCATGA
* * *
33517120 ATATGAATGTGA-CTGGGCCTAATGCGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
* *
33517148 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
* *
33517177 ATATGCAGATGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
*
33517206 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
33517234 A
1 A
33517235 GATACAGGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
28 27 0.36
29 49 0.64
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:33519062 original size:20 final size:20
Alignment explanation
Indices: 33519033--33519070 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
33519023 TGACACCCTC
*
33519033 AAACCCTAAAACCTAAACAT
1 AAACCATAAAACCTAAACAT
*
33519053 AAACCATAAACCCTAAAC
1 AAACCATAAAACCTAAAC
33519071 CCTACTCGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.32, G:0.00, T:0.13
Consensus pattern (20 bp):
AAACCATAAAACCTAAACAT
Found at i:33519072 original size:7 final size:7
Alignment explanation
Indices: 33519027--33519074 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
33519017 CTTAATTGAC
33519027 ACCCTCAA
1 ACCCT-AA
33519035 ACCCTAA
1 ACCCTAA
*
33519042 AACCTAA
1 ACCCTAA
*
33519049 A-CATAA
1 ACCCTAA
*
33519055 ACCATAA
1 ACCCTAA
33519062 ACCCTAA
1 ACCCTAA
33519069 ACCCTA
1 ACCCTA
33519075 CTCGGTCGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
6 5 0.14
7 26 0.72
8 5 0.14
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.15
Consensus pattern (7 bp):
ACCCTAA
Found at i:33520827 original size:43 final size:42
Alignment explanation
Indices: 33520770--33520928 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 42
33520760 AATGCCAACG
*
33520770 TCCCAGACATGGTCTTACATGTAATTTAGTATCGATGCCTCTA
1 TCCCAGACATGGTCTTACACGTAATTTAG-ATCGATGCCTCTA
* * * * * *
33520813 TCCCAGACAGGGTCTTATACG-AAATCAGATACGATGCCTATG
1 TCCCAGACATGGTCTTACACGTAATTTAGAT-CGATGCCTCTA
*
33520855 TCCCAGACATGGTCTTACACGTAAATTTCAAATCGATG-C-CTA
1 TCCCAGACATGGTCTTACACGT-AATTT-AGATCGATGCCTCTA
* * *
33520897 TCCTAGACACGGTCTTACACGATAATTCAGAT
1 TCCCAGACATGGTCTTACACG-TAATTTAGAT
33520929 TAATACCAAT
Statistics
Matches: 93, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
41 5 0.05
42 57 0.61
43 20 0.22
44 8 0.09
45 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAATTTAGATCGATGCCTCTA
Found at i:33524342 original size:20 final size:18
Alignment explanation
Indices: 33524302--33524346 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
33524292 CCCATACGGG
*
33524302 TAATAATAAAAAAAATGTA
1 TAAT-ATAAAAAAAAGGTA
33524321 TAATATAAAAAAATAGGCTA
1 TAATATAAAAAAA-AGG-TA
33524341 TAATAT
1 TAATAT
33524347 GTTCTGTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 6 0.26
20 8 0.35
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (18 bp):
TAATATAAAAAAAAGGTA
Found at i:33541311 original size:17 final size:18
Alignment explanation
Indices: 33541269--33541317 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
33541259 AGTTGAAAAG
33541269 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
33541288 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
33541305 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
33541318 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:33542205 original size:40 final size:40
Alignment explanation
Indices: 33542139--33542305 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
33542129 AAATTGAATG
* * *
33542139 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
33542178 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
33542218 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
33542258 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
33542298 ATATCCGG
1 ATATCCGG
33542306 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:33549322 original size:17 final size:18
Alignment explanation
Indices: 33549280--33549328 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
33549270 AGTTGAAAAG
33549280 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
33549299 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
33549316 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
33549329 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:33550216 original size:40 final size:40
Alignment explanation
Indices: 33550150--33550316 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
33550140 AAATTGAATG
* * *
33550150 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
33550189 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
33550229 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
33550269 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
33550309 ATATCCGG
1 ATATCCGG
33550317 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:33557537 original size:40 final size:40
Alignment explanation
Indices: 33557478--33557685 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
33557468 CAATTGAATG
* * * *
33557478 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
33557518 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
33557558 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
33557598 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
33557638 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
33557678 ATATCCGG
1 ATATCCGG
33557686 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:33557616 original size:80 final size:80
Alignment explanation
Indices: 33557480--33557685 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 80
33557470 ATTGAATGAT
* * ** * * *
33557480 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
33557545 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
33557560 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* **
33557625 TGTGCAAGTCGTTGT
66 TGTGCAAGTCGCTAC
* *
33557640 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
33557686 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:33565564 original size:41 final size:40
Alignment explanation
Indices: 33565419--33565627 Score: 215
Period size: 40 Copynumber: 5.2 Consensus size: 40
33565409 CAATTGAATG
* * ** * **
33565419 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
33565459 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
33565499 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
33565539 AAATCCGGGCTAAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCT-AAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
33565580 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
33565620 ATATCCGG
1 ATATCCGG
33565628 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.02
40 101 0.71
41 39 0.27
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:33565590 original size:81 final size:80
Alignment explanation
Indices: 33565419--33565627 Score: 240
Period size: 81 Copynumber: 2.6 Consensus size: 80
33565409 CAATTGAATG
* * ** * * *
33565419 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGTAAAGACCCGAAGGCA
*
33565484 ATTGTGCTAGTGACT
66 ATTGTGCAAGTGACT
* * * *
33565499 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAAATACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGG-TAAAGACCCGAAGGC
* *
33565564 ATTTGTGCAAGTCG-TT
65 AATTGTGCAAGT-GACT
* * *
33565580 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
33565628 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
80 40 0.37
81 67 0.62
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGTAAAGACCCGAAGGCA
ATTGTGCAAGTGACT
Found at i:33571316 original size:40 final size:40
Alignment explanation
Indices: 33571214--33571365 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
33571204 AAATTGAATG
* * * * * *
33571214 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
33571254 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
33571294 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
33571334 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
33571366 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.03
40 91 0.95
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:33571380 original size:40 final size:38
Alignment explanation
Indices: 33571210--33571382 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
33571200 TGAGAAATTG
* * *
33571210 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
33571250 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
33571287 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
33571327 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
33571367 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
33571383 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 4 0.04
40 98 0.90
41 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:33577951 original size:71 final size:71
Alignment explanation
Indices: 33577868--33578031 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
33577858 CGATTTGTCT
*
33577868 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
33577933 CTTTCA
66 CTTTCA
*
33577939 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
33578004 CTTTCA
66 CTTTCA
33578010 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
33578032 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:33578069 original size:71 final size:70
Alignment explanation
Indices: 33577868--33578065 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
33577858 CGATTTGTCT
* * *
33577868 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGTGACCTAGCTACATTTAC
33577933 CTTTCA
65 CTTTCA
* * * * *
33577939 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGTGACCTAGCTACATTTAC
33578004 CTTTCA
65 CTTTCA
*
33578010 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGTGACCTAGCTAC
33578066 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 94 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGTGACCTAGCTACATTTACC
TTTCA
Found at i:33579748 original size:29 final size:29
Alignment explanation
Indices: 33579707--33579789 Score: 121
Period size: 29 Copynumber: 2.9 Consensus size: 29
33579697 AATCCCATTT
*
33579707 ATATGGCCCATCAGGCTCAATTCACATCC
1 ATATGGCCCATCAGGCCCAATTCACATCC
* *
33579736 ATATGGCCTATCAGGCCCAATTCATATCC
1 ATATGGCCCATCAGGCCCAATTCACATCC
* *
33579765 ATATGGCCCATTAGGCCCAAATCAC
1 ATATGGCCCATCAGGCCCAATTCAC
33579790 CTTTATATGG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCAATTCACATCC
Found at i:33579797 original size:29 final size:29
Alignment explanation
Indices: 33579679--33579825 Score: 113
Period size: 29 Copynumber: 5.1 Consensus size: 29
33579669 ACATACACGC
33579679 ATATGGCCCACTT-GGCCC-AATC-CCATTT
1 ATATGGCCCA-TTAGGCCCAAATCACC-TTT
* * * * **
33579707 ATATGGCCCATCAGGCTCAATTCACATCC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* * * ** **
33579736 ATATGGCCTATCAGGCCCAATTCATATCC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
33579765 ATATGGCCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* *
33579794 ATATGGACCGTTAGGCCCAAATCACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
33579822 ATAT
1 ATAT
33579826 TCATGCTCAC
Statistics
Matches: 98, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
27 1 0.01
28 20 0.20
29 76 0.78
30 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:33583652 original size:68 final size:70
Alignment explanation
Indices: 33583580--33583777 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
33583570 ACACCCTGTA
* * * *
33583580 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
33583642 ATAAAT
65 ATAAAT
*
33583648 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
33583713 ATAAAT
65 ATAAAT
*
33583719 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
33583778 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:33583691 original size:41 final size:41
Alignment explanation
Indices: 33583646--33583763 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
33583636 TGAAAGATAA
33583646 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
33583687 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33583717 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33583758 ATGTAG
1 ATGTAG
33583764 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:33583703 original size:71 final size:71
Alignment explanation
Indices: 33583614--33583777 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
33583604 GAGATGTATC
33583614 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33583679 AGGACA
66 AGGACA
33583685 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33583750 AGGACA
66 AGGACA
33583756 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
33583778 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:33591219 original size:68 final size:70
Alignment explanation
Indices: 33591147--33591344 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
33591137 ACACCCTGTA
* * * *
33591147 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
33591209 ATAAAT
65 ATAAAT
*
33591215 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
33591280 ATAAAT
65 ATAAAT
*
33591286 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
33591345 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:33591258 original size:41 final size:41
Alignment explanation
Indices: 33591213--33591330 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
33591203 TGAAAGATAA
33591213 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
33591254 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33591284 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33591325 ATGTAG
1 ATGTAG
33591331 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:33591270 original size:71 final size:71
Alignment explanation
Indices: 33591181--33591344 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
33591171 GAGATGTATC
33591181 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33591246 AGGACA
66 AGGACA
33591252 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33591317 AGGACA
66 AGGACA
33591323 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
33591345 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Done.