Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 113 of 410
Found at i:33595886 original size:47 final size:46
Alignment explanation
Indices: 33595819--33595921 Score: 181
Period size: 47 Copynumber: 2.2 Consensus size: 46
33595809 GTAAATATTT
33595819 ATTAA-AAATATTTACAAAGTCAATTGAGTGGTTAATTAGACTTCA
1 ATTAATAAATATTTACAAAGTCAATTGAGTGGTTAATTAGACTTCA
33595864 ATTTAATAAATATTTACAAAGTCAATTGAGTGGTTAATTAGACTTCA
1 A-TTAATAAATATTTACAAAGTCAATTGAGTGGTTAATTAGACTTCA
33595911 ATTAAGTAAAT
1 ATTAA-TAAAT
33595922 TTAGCTTAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
45 1 0.02
46 8 0.15
47 46 0.84
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.37
Consensus pattern (46 bp):
ATTAATAAATATTTACAAAGTCAATTGAGTGGTTAATTAGACTTCA
Found at i:33595913 original size:23 final size:23
Alignment explanation
Indices: 33595838--33595913 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 23
33595828 ATTTACAAAG
33595838 TCAATTGAGTGGTTAATTAGACT
1 TCAATTGAGTGGTTAATTAGACT
* * *** * * **
33595861 TCAATTTAATAAATATTTACAAAG
1 TCAATTGAGTGGTTAATTA-GACT
33595885 TCAATTGAGTGGTTAATTAGACT
1 TCAATTGAGTGGTTAATTAGACT
33595908 TCAATT
1 TCAATT
33595914 AAGTAAATTT
Statistics
Matches: 34, Mismatches: 18, Indels: 2
0.63 0.33 0.04
Matches are distributed among these distances:
23 20 0.59
24 14 0.41
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.39
Consensus pattern (23 bp):
TCAATTGAGTGGTTAATTAGACT
Found at i:33596299 original size:13 final size:13
Alignment explanation
Indices: 33596281--33596323 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
33596271 TTTAATAATA
33596281 AAATAAAGAAATG
1 AAATAAAGAAATG
33596294 AAATAAAGAAAT-
1 AAATAAAGAAATG
* *
33596306 AAATGAAATAAAAG
1 AAAT-AAAGAAATG
33596320 AAAT
1 AAAT
33596324 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:33596311 original size:17 final size:18
Alignment explanation
Indices: 33596277--33596323 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
33596267 ATAGTTTAAT
* *
33596277 AATAAAATAAAGAAATGA
1 AATAAAAGAAATAAATGA
33596295 AAT-AAAGAAATAAATGA
1 AATAAAAGAAATAAATGA
33596312 AATAAAAGAAAT
1 AATAAAAGAAAT
33596324 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (18 bp):
AATAAAAGAAATAAATGA
Found at i:33596315 original size:9 final size:9
Alignment explanation
Indices: 33596289--33596323 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
33596279 TAAAATAAAG
33596289 AAATGAAAT
1 AAATGAAAT
33596298 AAA-GAAAT
1 AAATGAAAT
33596306 AAATGAAAT
1 AAATGAAAT
*
33596315 AAAAGAAAT
1 AAATGAAAT
33596324 GAAAAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (9 bp):
AAATGAAAT
Found at i:33597719 original size:15 final size:15
Alignment explanation
Indices: 33597699--33597733 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
33597689 AAGTGAATTT
*
33597699 GAATTGAATTGAATG
1 GAATTGAATGGAATG
33597714 GAATTGAATGGAATG
1 GAATTGAATGGAATG
33597729 GAATT
1 GAATT
33597734 ATGATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (15 bp):
GAATTGAATGGAATG
Found at i:33598518 original size:15 final size:15
Alignment explanation
Indices: 33598498--33598531 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
33598488 AGTGAATTTT
*
33598498 AATTGAATTGAATGG
1 AATTGAATGGAATGG
33598513 AATTGAATGGAATGG
1 AATTGAATGGAATGG
33598528 AATT
1 AATT
33598532 ATGATTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.32
Consensus pattern (15 bp):
AATTGAATGGAATGG
Found at i:33598984 original size:45 final size:45
Alignment explanation
Indices: 33598918--33599202 Score: 374
Period size: 45 Copynumber: 6.3 Consensus size: 45
33598908 CTGTTACCGC
33598918 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
33598963 TACTACTACTGTTACCGATTCGGCACTTTTTGTGTCGAACATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
33599008 TACTGTTACCGTTACCGATTCGGCACTTTGTATGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* ** * *
33599053 TACTGTTACCATTACCGATTCAGCACTGTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
33599098 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
** * ** * *
33599143 TACTAATACTGTTACCAATTCAACACTTTGTGTGTTGAATACTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
33599188 TACT-CTTACTGTTAC
1 TACTGC-TACTGTTAC
33599203 TGTTACTATT
Statistics
Matches: 214, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 214 1.00
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (45 bp):
TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:33599409 original size:18 final size:18
Alignment explanation
Indices: 33599388--33599658 Score: 133
Period size: 18 Copynumber: 14.6 Consensus size: 18
33599378 TAACTGATTA
*
33599388 TTACTAAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
33599406 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
*
33599424 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
33599442 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
33599460 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
33599478 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
33599496 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
33599514 CTACTGAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
*
33599533 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
* *
33599550 TTTCTGAATTATTGACTG
1 TTACTGAATAATTGACTG
33599568 TTACTAGATAACCGATCAATTGA-TCG
1 TTACT-G---A---AT-AATTGACT-G
* * ** *
33599594 ATACTGAATAACTGGTTA
1 TTACTGAATAATTGACTG
* *
33599612 TTATTGAATAATTGATTG
1 TTACTGAATAATTGACTG
* *
33599630 TTACCGAATAACTGACTG
1 TTACTGAATAATTGACTG
33599648 TTACTGAATAA
1 TTACTGAATAA
33599659 ATAATTATCC
Statistics
Matches: 195, Mismatches: 36, Indels: 44
0.71 0.13 0.16
Matches are distributed among these distances:
17 18 0.09
18 141 0.72
19 20 0.10
22 2 0.01
25 4 0.02
26 10 0.05
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:33599656 original size:36 final size:36
Alignment explanation
Indices: 33599376--33599658 Score: 169
Period size: 36 Copynumber: 7.6 Consensus size: 36
33599366 AAAGGTATAA
* * * * *
33599376 AATAACTGATTATTACTAAATAATTGACTGTTACCG
1 AATAACTGACTGTTACTGAATAATTGATTGTTACTG
* * * *
33599412 GATAATTGACTGTTACTGGAT-ATTAGACTGTTACTG
1 AATAACTGACTGTTACTGAATAATT-GATTGTTACTG
* * **
33599448 AATAACTGAATATTACTGAATAATTGATCATTACTG
1 AATAACTGACTGTTACTGAATAATTGATTGTTACTG
* * * *
33599484 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTGACTGTTACTGAAT-AATTGATTGTTACTG
* * *
33599520 AATAACTTAATAGTTACTGAAT-ATCTGATT-TTTCTG
1 AATAACTGACT-GTTACTGAATAAT-TGATTGTTACTG
* * * *
33599556 AATTATTGACTGTTACTAGATAACCGATCAATTGATCGATACTG
1 AATAACTGACTGTTACT-G---A---AT-AATTGATTGTTACTG
** * * *
33599600 AATAACTGGTTATTATTGAATAATTGATTGTTACCG
1 AATAACTGACTGTTACTGAATAATTGATTGTTACTG
33599636 AATAACTGACTGTTACTGAATAA
1 AATAACTGACTGTTACTGAATAA
33599659 ATAATTATCC
Statistics
Matches: 183, Mismatches: 48, Indels: 32
0.70 0.18 0.12
Matches are distributed among these distances:
35 10 0.05
36 127 0.69
37 20 0.11
39 1 0.01
40 1 0.01
42 2 0.01
43 5 0.03
44 17 0.09
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (36 bp):
AATAACTGACTGTTACTGAATAATTGATTGTTACTG
Found at i:33603986 original size:13 final size:13
Alignment explanation
Indices: 33603968--33603992 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33603958 TTTAATAATA
33603968 AAATAAAGAAATG
1 AAATAAAGAAATG
33603981 AAATAAAGAAAT
1 AAATAAAGAAAT
33603993 CAATGAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:33603999 original size:17 final size:18
Alignment explanation
Indices: 33603977--33604010 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
33603967 AAAATAAAGA
33603977 AATGAAAT-AAAGAAATC
1 AATGAAATAAAAGAAATC
33603994 AATGAAATAAAAGAAAT
1 AATGAAATAAAAGAAAT
33604011 GAAAAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.68, C:0.03, G:0.12, T:0.18
Consensus pattern (18 bp):
AATGAAATAAAAGAAATC
Found at i:33605384 original size:5 final size:5
Alignment explanation
Indices: 33605369--33605410 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
33605359 AGTGGAAAAG
* *
33605369 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT T
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT T
33605411 ATGATTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (5 bp):
TGAAT
Found at i:33606058 original size:45 final size:45
Alignment explanation
Indices: 33605819--33606051 Score: 295
Period size: 45 Copynumber: 5.2 Consensus size: 45
33605809 CTGTTACCGC
* * * *
33605819 TACTGCTACTGTTATCGATTCGGCACTTTGTGTGTCAAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
** * *
33605864 TACTACTACTGTTACCGATTCGTCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * * *
33605909 TACTATTACCGTTACTGATTCGGCACTGTGTGTGTCAAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
33605954 TATTGTTACCGTTATCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* ** * *
33605999 TACTGATACCGTTACCGATTCAACACTTTGTGTGTTGAATACTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
33606044 TACTGTTA
1 TACTGTTA
33606052 TTGTTACTAT
Statistics
Matches: 164, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 164 1.00
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:33606246 original size:18 final size:18
Alignment explanation
Indices: 33606219--33606514 Score: 120
Period size: 18 Copynumber: 16.1 Consensus size: 18
33606209 AAAGGTATAA
*
33606219 AATAACTGATTATTACTG
1 AATAATTGATTATTACTG
* *
33606237 AATAATTGATTGTTACCG
1 AATAATTGATTATTACTG
* * *
33606255 GATAATTGACTGTTACTG
1 AATAATTGATTATTACTG
* * * *
33606273 GAT-ATTAGACTGTTACTA
1 AATAATT-GATTATTACTG
* *
33606291 AATAACTGAATATTACTG
1 AATAATTGATTATTACTG
*
33606309 AATAATTGATCATTACTG
1 AATAATTGATTATTACTG
* *
33606327 AATAATTGATTGTAACTG
1 AATAATTGATTATTACTG
* **
33606345 AATGAATT-ACTGCTACTG
1 AAT-AATTGATTATTACTG
*
33606363 AATAACTT-AATAGTTACTG
1 AATAA-TTGATTA-TTACTG
33606382 AAT-ATCTGATT-TTACTG
1 AATAAT-TGATTATTACTG
* * *
33606399 AATTATTGACTGTTACTGG
1 AATAATTGATTATTACT-G
*
33606418 ATAACCGATCAATTGATCGA-TACTG
1 ---A---AT-AATTGAT-TATTACTG
* * *
33606443 AATAACTGGTTATTATTG
1 AATAATTGATTATTACTG
* *
33606461 AATAATTGATTGTTACCG
1 AATAATTGATTATTACTG
* * *
33606479 AATAACTGACTATTTCTG
1 AATAATTGATTATTACTG
* *
33606497 AATAAATAATTATT-CTG
1 AATAATTGATTATTACTG
33606514 A
1 A
33606515 GTGTTAATGA
Statistics
Matches: 212, Mismatches: 47, Indels: 39
0.71 0.16 0.13
Matches are distributed among these distances:
17 24 0.11
18 155 0.73
19 19 0.09
22 2 0.01
25 3 0.01
26 9 0.04
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (18 bp):
AATAATTGATTATTACTG
Found at i:33606335 original size:72 final size:69
Alignment explanation
Indices: 33606218--33606420 Score: 219
Period size: 72 Copynumber: 2.8 Consensus size: 69
33606208 TAAAGGTATA
* * * *
33606218 AAATAACTGATTATTACTGAATAATTGATTGTTACCGGATAATTGACTGTTACTGGATATTAGAC
1 AAATAACTGAATATTACTGAATAATTGA-TATTACTGAATAATTGACTGTTACTGGATATT--AC
*
33606283 TGTTACT
63 TGCTACT
* * *
33606290 AAATAACTGAATATTACTGAATAATTGATCATTACTGAATAATTGATTGTAACTGAATGAATTAC
1 AAATAACTGAATATTACTGAATAATTGAT-ATTACTGAATAATTGACTGTTACTGGAT--ATTAC
33606355 TGCTACT
63 TGCTACT
* * * *
33606362 GAATAACTTAATAGTTACTGAAT-ATCTGATTTTACTGAATTATTGACTGTTACTGGATA
1 AAATAACTGAATA-TTACTGAATAAT-TGATATTACTGAATAATTGACTGTTACTGGATA
33606421 ACCGATCAAT
Statistics
Matches: 111, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
70 1 0.01
71 1 0.01
72 93 0.84
73 13 0.12
74 3 0.03
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (69 bp):
AAATAACTGAATATTACTGAATAATTGATATTACTGAATAATTGACTGTTACTGGATATTACTGC
TACT
Found at i:33606416 original size:54 final size:55
Alignment explanation
Indices: 33606303--33606422 Score: 133
Period size: 54 Copynumber: 2.2 Consensus size: 55
33606293 TAACTGAATA
*
33606303 TTACTGAATAA-TTGATCATTACTGAATAATTGATTGTAACTGAATGAATTACTG
1 TTACTGAATAACTTAATCATTACTGAATAATTGATTGTAACTGAATGAATTACTG
* * *
33606357 CTACTGAATAACTTAAT-AGTTACTGAAT-ATCTGATT-TTACTGAAT-TATTGACTG
1 TTACTGAATAACTTAATCA-TTACTGAATAAT-TGATTGTAACTGAATGAATT-ACTG
*
33606411 TTACTGGATAAC
1 TTACTGAATAAC
33606423 CGATCAATTG
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
53 3 0.05
54 35 0.62
55 18 0.32
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (55 bp):
TTACTGAATAACTTAATCATTACTGAATAATTGATTGTAACTGAATGAATTACTG
Found at i:33610829 original size:13 final size:13
Alignment explanation
Indices: 33610811--33610835 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33610801 TTTAATAATA
33610811 AAATAAAGAAATG
1 AAATAAAGAAATG
33610824 AAATAAAGAAAT
1 AAATAAAGAAAT
33610836 AAAAGAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:33612228 original size:5 final size:5
Alignment explanation
Indices: 33612213--33612248 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
33612203 AGTGGAAAAG
33612213 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT
33612249 GAAATTATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (5 bp):
TGAAT
Found at i:33612721 original size:45 final size:45
Alignment explanation
Indices: 33612668--33612895 Score: 341
Period size: 45 Copynumber: 5.1 Consensus size: 45
33612658 ACTGCTACTA
* *
33612668 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGCTACTG
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACCG
33612713 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACCG
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACCG
* *
33612758 TTACCGATT-GGCACTGTCTGTGTCGAATATTGTTACTGTTACCG
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACCG
* *
33612802 TTACCGATTCGGCATTTTGTGTGTCGAATATTGTTACTGATACCG
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACCG
* ** * * *
33612847 TTACCAATTCAACACTTTGTGTGTTGAATACTGTTACTGTTACTG
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACCG
33612892 TTAC
1 TTAC
33612896 TATTCTGGAT
Statistics
Matches: 166, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
44 42 0.25
45 124 0.75
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (45 bp):
TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACCG
Found at i:33612785 original size:89 final size:90
Alignment explanation
Indices: 33612668--33612895 Score: 350
Period size: 89 Copynumber: 2.5 Consensus size: 90
33612658 ACTGCTACTA
*
33612668 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGCTACTGTTACCGATTCGGCACTTTGT
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACTGTTACCGATTCGGCACTTTGT
*
33612733 GTGTCGAATATTGTTACTGTTACCG
66 GTGTCGAATATTGTTACTGATACCG
* * * *
33612758 TTACCGATT-GGCACTGTCTGTGTCGAATATTGTTACTGTTACCGTTACCGATTCGGCATTTTGT
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACTGTTACCGATTCGGCACTTTGT
33612822 GTGTCGAATATTGTTACTGATACCG
66 GTGTCGAATATTGTTACTGATACCG
* ** * *
33612847 TTACCAATTCAACACTTTGTGTGTTGAATACTGTTACTGTTACTGTTAC
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACTGTTAC
33612896 TATTCTGGAT
Statistics
Matches: 123, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
89 82 0.67
90 41 0.33
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (90 bp):
TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACTGTTACCGATTCGGCACTTTGT
GTGTCGAATATTGTTACTGATACCG
Found at i:33613134 original size:18 final size:18
Alignment explanation
Indices: 33613083--33613266 Score: 101
Period size: 18 Copynumber: 10.2 Consensus size: 18
33613073 TTATTTCTGA
**
33613083 ATAATTGACTGTTACCAG
1 ATAATTGACTGTTACTGG
33613101 ATAATTGACTGTTACTGG
1 ATAATTGACTGTTACTGG
*
33613119 AT-ATTAGACTGTTACTGA
1 ATAATT-GACTGTTACTGG
* * *
33613137 ATAATTGAATATTACTGA
1 ATAATTGACTGTTACTGG
* *
33613155 ATAATTGA-TCATTACTGA
1 ATAATTGACT-GTTACTGG
* * * **
33613173 ATAACTGATTGTCACTAA
1 ATAATTGACTGTTACTGG
* *
33613191 ATGAA-TGACTGCTACTGA
1 AT-AATTGACTGTTACTGG
* *
33613209 ATAACTT-AATAGTTACTGA
1 ATAA-TTGACT-GTTACTGG
* *
33613228 AT-ATCTGA-TTTTACTGA
1 ATAAT-TGACTGTTACTGG
33613245 ATAATTGACTGTTACTGG
1 ATAATTGACTGTTACTGG
33613263 ATAA
1 ATAA
33613267 CCGATCAATT
Statistics
Matches: 136, Mismatches: 18, Indels: 24
0.76 0.10 0.13
Matches are distributed among these distances:
17 19 0.14
18 100 0.74
19 17 0.12
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
ATAATTGACTGTTACTGG
Found at i:33613141 original size:36 final size:34
Alignment explanation
Indices: 33613079--33613261 Score: 127
Period size: 36 Copynumber: 5.1 Consensus size: 34
33613069 CTGATTATTT
* *
33613079 CTGAATAATTGACTGTTAC-CAGATAATTGACTGTTA
1 CTGAAT-ATTGA-TGTTACTGA-ATAATTGAATGTTA
* *
33613115 CTGGATATTAGACTGTTACTGAATAATTGAATATTA
1 CTGAATATT-GA-TGTTACTGAATAATTGAATGTTA
* * * *
33613151 CTGAATAATTGATCATTACTGAATAACTGATTGTCA
1 CTGAAT-ATTGAT-GTTACTGAATAATTGAATGTTA
* * *
33613187 CTAAATGAATGACTGCTACTGAATAACTT-AATAGTTA
1 CTGAAT-ATTGA-TGTTACTGAATAA-TTGAAT-GTTA
* *
33613224 CTGAATATCTGATTTTACTGAATAATTGACTGTTA
1 CTGAATAT-TGATGTTACTGAATAATTGAATGTTA
33613259 CTG
1 CTG
33613262 GATAACCGAT
Statistics
Matches: 115, Mismatches: 23, Indels: 19
0.73 0.15 0.12
Matches are distributed among these distances:
35 13 0.11
36 85 0.74
37 17 0.15
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (34 bp):
CTGAATATTGATGTTACTGAATAATTGAATGTTA
Found at i:33613255 original size:54 final size:55
Alignment explanation
Indices: 33613064--33613267 Score: 163
Period size: 54 Copynumber: 3.8 Consensus size: 55
33613054 AAAGGTATAA
* * * * *
33613064 AATAACTGATTATTTCTGAATAATTGACTGTTAC-CAGATAA-TTGA-CTGTTACTG
1 AATAACTGATTGTTACTGAATAATTGACTGTTACTGA-ATAACTTAATC-ATTACTG
* * * * * *
33613118 GAT-ATTAGACTGTTACTGAATAATTGAATATTACTGAATAA-TTGATCATTACTG
1 AATAACT-GATTGTTACTGAATAATTGACTGTTACTGAATAACTTAATCATTACTG
* * *
33613172 AATAACTGATTGTCACTAAATGAA-TGACTGCTACTGAATAACTTAAT-AGTTACTG
1 AATAACTGATTGTTACTGAAT-AATTGACTGTTACTGAATAACTTAATCA-TTACTG
* *
33613227 AATATCTGATT-TTACTGAATAATTGACTGTTACTGGATAAC
1 AATAACTGATTGTTACTGAATAATTGACTGTTACTGAATAAC
33613268 CGATCAATTG
Statistics
Matches: 119, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
53 4 0.03
54 89 0.75
55 26 0.22
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (55 bp):
AATAACTGATTGTTACTGAATAATTGACTGTTACTGAATAACTTAATCATTACTG
Found at i:33613346 original size:36 final size:36
Alignment explanation
Indices: 33613273--33613346 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
33613263 ATAACCGATC
* * *
33613273 AATTGATTGATACTGAATAACTGGTTATTATTAAAT
1 AATTGATTGATACCGAATAACTGCTTATTACTAAAT
* *
33613309 AATTGATTGTTACCGAATAACTGACTT-TTACTGAAT
1 AATTGATTGATACCGAATAACTG-CTTATTACTAAAT
33613345 AA
1 AA
33613347 ATAATTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 30 0.94
37 2 0.06
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (36 bp):
AATTGATTGATACCGAATAACTGCTTATTACTAAAT
Found at i:33614574 original size:15 final size:17
Alignment explanation
Indices: 33614542--33614574 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
33614532 TGTTGATACA
33614542 TGTGAATGTGAGTTTGG
1 TGTGAATGTGAGTTTGG
33614559 TGTGAAT-TGA-TTTGG
1 TGTGAATGTGAGTTTGG
33614574 T
1 T
33614575 AAATTATGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (17 bp):
TGTGAATGTGAGTTTGG
Found at i:33616355 original size:59 final size:59
Alignment explanation
Indices: 33616263--33616381 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
33616253 ACCTTGAAAG
33616263 TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
1 TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
33616322 TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
1 TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
33616381 T
1 T
33616382 ACGCATATAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (59 bp):
TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
Found at i:33623658 original size:59 final size:59
Alignment explanation
Indices: 33623566--33623684 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
33623556 ACCTTGAAAG
33623566 TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
1 TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
33623625 TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
1 TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
33623684 T
1 T
33623685 ACGTATATAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (59 bp):
TGTAAATATTTTTAAGTATGGCATGTATAGGCTAGAATGTCTATGTATTTAAGCTTTGA
Found at i:33632283 original size:40 final size:40
Alignment explanation
Indices: 33632239--33632367 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
33632229 TGCTGGAAAT
* *
33632239 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
33632279 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
33632319 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
33632359 TATATCCGG
1 TATATCCGG
33632368 TTATATTCTG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:33636271 original size:15 final size:15
Alignment explanation
Indices: 33636251--33636289 Score: 69
Period size: 15 Copynumber: 2.5 Consensus size: 15
33636241 TTGGCATTAT
33636251 AGATCAAGAGAAACG
1 AGATCAAGAGAAACG
33636266 AGATCAAGAGAAACG
1 AGATCAAGAGAAACG
33636281 AGATTCAAG
1 AGA-TCAAG
33636290 TCGCGATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.51, C:0.13, G:0.26, T:0.10
Consensus pattern (15 bp):
AGATCAAGAGAAACG
Found at i:33636681 original size:46 final size:46
Alignment explanation
Indices: 33636631--33636803 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
33636621 TGGTTGAGCA
33636631 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
33636677 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
33636722 CATCCGAACTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33636770 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33636804 GGGGCAGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:33636787 original size:93 final size:93
Alignment explanation
Indices: 33636628--33636798 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
33636618 GGATGGTTGA
* * *
33636628 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33636693 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
33636721 GCATCCGAACTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
33636786 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
33636799 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:33663496 original size:16 final size:16
Alignment explanation
Indices: 33663477--33663508 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
33663467 TATTATGAGA
33663477 TATTTAAATTGTTATG
1 TATTTAAATTGTTATG
33663493 TATTTAAATTGTTATG
1 TATTTAAATTGTTATG
33663509 AGATAGAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (16 bp):
TATTTAAATTGTTATG
Found at i:33666818 original size:50 final size:50
Alignment explanation
Indices: 33666685--33666885 Score: 217
Period size: 50 Copynumber: 4.0 Consensus size: 50
33666675 ATGATCTATT
* * * * *
33666685 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAA
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATA
* * * * **
33666736 TTGCGATCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATA
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
*
33666786 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACT-
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TA
* * * * *
33666836 GT-TGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCAGATA
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
33666885 G
1 G
33666886 CTTTGGTTAC
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
48 1 0.01
49 40 0.32
50 46 0.37
51 37 0.30
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (50 bp):
GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
Found at i:33668759 original size:80 final size:80
Alignment explanation
Indices: 33668675--33668823 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
33668665 TATGGTAACC
* * * *
33668675 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
33668739 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
33668755 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
33668820 CCGG
66 CCGG
33668824 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:33668765 original size:40 final size:38
Alignment explanation
Indices: 33668716--33668823 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
33668706 ATCACGATTT
*
33668716 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
33668756 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
33668796 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
33668824 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:33675008 original size:29 final size:28
Alignment explanation
Indices: 33674976--33675078 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
33674966 GTGACGAGAT
* *
33674976 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
33675005 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
33675034 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
33675063 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33675079 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:33682797 original size:29 final size:28
Alignment explanation
Indices: 33682765--33682867 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
33682755 GTGACGAGAT
* *
33682765 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
33682794 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
33682823 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
33682852 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33682868 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:33689215 original size:54 final size:54
Alignment explanation
Indices: 33689133--33689240 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
33689123 GCAAATCATC
33689133 TGGAAATGCTTTGAGAAAATATTTTTTTAAATTTCACCTATAAATTAATTATTT
1 TGGAAATGCTTTGAGAAAATATTTTTTTAAATTTCACCTATAAATTAATTATTT
33689187 TGGAAATGCTTTGAGAAAATATTTTTTTAAATTTCACCTATAAATTAATTATTT
1 TGGAAATGCTTTGAGAAAATATTTTTTTAAATTTCACCTATAAATTAATTATTT
33689241 CAGAAAATGA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.46
Consensus pattern (54 bp):
TGGAAATGCTTTGAGAAAATATTTTTTTAAATTTCACCTATAAATTAATTATTT
Found at i:33693664 original size:2 final size:2
Alignment explanation
Indices: 33693657--33693694 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
33693647 AAAGTAACAT
33693657 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
33693695 TTAACGCCAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:33694232 original size:17 final size:17
Alignment explanation
Indices: 33694201--33694233 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33694191 GAAAAAAACA
33694201 TTACAAAAATATTAAAT
1 TTACAAAAATATTAAAT
33694218 TTACTAAAAAT-TTAAA
1 TTAC-AAAAATATTAAA
33694234 AATATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
TTACAAAAATATTAAAT
Found at i:33694237 original size:47 final size:48
Alignment explanation
Indices: 33694130--33694237 Score: 123
Period size: 47 Copynumber: 2.3 Consensus size: 48
33694120 AAAATTATAA
* ** * **
33694130 AAAAATATAAAAAT-GAAAAAAATATTTTAAAAATTAATAATTTTTTT
1 AAAAATATAAAAATAGAAAAAAACATTACAAAAATTAATAAATTTACT
*
33694177 AAAAATAT-AAAATAGAAAAAAACATTACAAAAA-TATTAAATTTACT
1 AAAAATATAAAAATAGAAAAAAACATTACAAAAATTAATAAATTTACT
*
33694223 AAAAATTTAAAAATA
1 AAAAATATAAAAATA
33694238 TATATTAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 21 0.41
47 30 0.59
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (48 bp):
AAAAATATAAAAATAGAAAAAAACATTACAAAAATTAATAAATTTACT
Found at i:33694314 original size:14 final size:14
Alignment explanation
Indices: 33694295--33694323 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
33694285 TCAATAAATC
33694295 GGAATTTAAAATTA
1 GGAATTTAAAATTA
33694309 GGAATTTAAAATTA
1 GGAATTTAAAATTA
33694323 G
1 G
33694324 TAAATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (14 bp):
GGAATTTAAAATTA
Found at i:33694967 original size:19 final size:19
Alignment explanation
Indices: 33694923--33694967 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
33694913 ACTTTTCCTA
33694923 ATTTTTTATAATTTTAAAT
1 ATTTTTTATAATTTTAAAT
33694942 -TTGTTTTA-AATTCTTAAAT
1 ATT-TTTTATAATT-TTAAAT
33694961 ATTTTTT
1 ATTTTTT
33694968 TTGTAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
18 6 0.26
19 15 0.65
20 2 0.09
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (19 bp):
ATTTTTTATAATTTTAAAT
Found at i:33702301 original size:27 final size:28
Alignment explanation
Indices: 33702236--33702305 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
33702226 AAATTTGTAC
33702236 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
33702264 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
33702291 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33702306 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:33702316 original size:27 final size:27
Alignment explanation
Indices: 33702236--33702317 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
33702226 AAATTTGTAC
* *
33702236 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
33702264 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
33702291 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
33702318 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:33710198 original size:27 final size:28
Alignment explanation
Indices: 33710133--33710202 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
33710123 AAATTTGTAC
33710133 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
33710161 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
33710188 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33710203 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:33710213 original size:27 final size:27
Alignment explanation
Indices: 33710133--33710214 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
33710123 AAATTTGTAC
* *
33710133 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
33710161 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
33710188 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
33710215 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:33717712 original size:43 final size:46
Alignment explanation
Indices: 33717656--33717790 Score: 168
Period size: 51 Copynumber: 2.9 Consensus size: 46
33717646 GAGATATGTG
* *
33717656 GCATCCGAGCTCGTTGAAAGGTCCGAGTTCATCATGGATG-C-G-A
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGTCAGTA
33717699 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGTGATTCATGTA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGA--TG--TCA-GTA
* *
33717750 ACATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGT
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGT
33717791 GTTACATATT
Statistics
Matches: 80, Mismatches: 4, Indels: 12
0.83 0.04 0.12
Matches are distributed among these distances:
43 36 0.45
45 2 0.03
47 1 0.01
48 1 0.01
49 2 0.03
50 1 0.01
51 37 0.46
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (46 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGTCAGTA
Found at i:33721566 original size:48 final size:48
Alignment explanation
Indices: 33721495--33721677 Score: 276
Period size: 48 Copynumber: 3.8 Consensus size: 48
33721485 CTTGCACACT
* * * *
33721495 TATCATCACTGATGACATGTCCCAGACATGGTCTTACACTGGCATGCA
1 TATCAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGCATACA
33721543 TATCAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGCATACA
1 TATCAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGCATACA
* *
33721591 TATCAACGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCATACA
1 TATCAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGCATACA
* * * *
33721639 CATAAACGCCGATGCCATGTCCTAGACATGGTCTTACAC
1 TATCAACACCGATGCCATGTCCCAGACATGGTCTTACAC
33721678 GGGATCTCAC
Statistics
Matches: 125, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 125 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (48 bp):
TATCAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGCATACA
Found at i:33723556 original size:32 final size:32
Alignment explanation
Indices: 33723507--33723581 Score: 127
Period size: 32 Copynumber: 2.4 Consensus size: 32
33723497 GCCAATCAAT
33723507 CTGTGTAA--TTTTTCTTGACACAATTTAGGC
1 CTGTGTAATTTTTTTCTTGACACAATTTAGGC
*
33723537 CTGTGTAATTTTTTTCTTGACACAGTTTAGGC
1 CTGTGTAATTTTTTTCTTGACACAATTTAGGC
33723569 CTGTGTAATTTTT
1 CTGTGTAATTTTT
33723582 ATTACAAGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
30 8 0.19
32 34 0.81
ACGTcount: A:0.20, C:0.15, G:0.17, T:0.48
Consensus pattern (32 bp):
CTGTGTAATTTTTTTCTTGACACAATTTAGGC
Found at i:33725910 original size:251 final size:252
Alignment explanation
Indices: 33725459--33725962 Score: 922
Period size: 251 Copynumber: 2.0 Consensus size: 252
33725449 TGTGTCGCCA
*
33725459 ATGTGTCAGGCAGCACCAGTGGGAATTAAAAGGAAAACAGGTGAAATAGGAAAAGAAAGATGAAA
1 ATGTGTCAGGCAACACCAGTGGGAATTAAAAGGAAAACAGGTGAAATAGGAAAAGAAAGATGAAA
*
33725524 AGAAAGAGTTGTAATAGAAAAAAAAACTAAAAAAAATAAAAGGGAAAGCCCATGACCAATGCTTG
66 AGAAAGAGTTGTAATAGAAAAAAAAACCAAAAAAAATAAAAGGGAAAGCCCATGACCAATGCTTG
* * *
33725589 CTTCATAAGTGGTTCTTGTCTTCTTAACTTGTCAATGTCACCATCAGTAGATGAAGAATATTTTC
131 CTTCATAAGTGGTTCTTGTCTTCCTAACTTGCCAATGTCACCATCAGTAGATGAAAAATATTTTC
*
33725654 AAAAAAATAATCTTAAATAAGATTAAAGTAGGAAAGAAAGAGATATGAGAGAAAGAT
196 AAAAAAATAATCTTAAATAAGATAAAAGTAGGAAAGAAAGAGATATGAGAGAAAGAT
33725711 ATGTGTCAGGCAACACCAGTGGGAATTAAAAGGAAAACAGGTGAAATAGGAAAAGAAAGATGAAA
1 ATGTGTCAGGCAACACCAGTGGGAATTAAAAGGAAAACAGGTGAAATAGGAAAAGAAAGATGAAA
33725776 AGAAAGAGTTGTAATAGAAAAAAAAACCAAAAAAAA-AAAAGGGAAAGCCCATGACCAATGCTTG
66 AGAAAGAGTTGTAATAGAAAAAAAAACCAAAAAAAATAAAAGGGAAAGCCCATGACCAATGCTTG
*
33725840 CTTCATAAGTGGTTCTTGTCTTCCTAATTTGCCAATGTCACCATCAGTAGATGAAAAAT-TATTT
131 CTTCATAAGTGGTTCTTGTCTTCCTAACTTGCCAATGTCACCATCAGTAGATGAAAAATAT-TTT
33725904 CAAAAAAATAATCTTAAATAAGATAAAAGTAGGAAAGAAAGAGATATGAGAGAAAGAT
195 CAAAAAAATAATCTTAAATAAGATAAAAGTAGGAAAGAAAGAGATATGAGAGAAAGAT
33725962 A
1 A
33725963 GAGAGACAGG
Statistics
Matches: 244, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
250 1 0.00
251 144 0.59
252 99 0.41
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.21
Consensus pattern (252 bp):
ATGTGTCAGGCAACACCAGTGGGAATTAAAAGGAAAACAGGTGAAATAGGAAAAGAAAGATGAAA
AGAAAGAGTTGTAATAGAAAAAAAAACCAAAAAAAATAAAAGGGAAAGCCCATGACCAATGCTTG
CTTCATAAGTGGTTCTTGTCTTCCTAACTTGCCAATGTCACCATCAGTAGATGAAAAATATTTTC
AAAAAAATAATCTTAAATAAGATAAAAGTAGGAAAGAAAGAGATATGAGAGAAAGAT
Found at i:33725967 original size:21 final size:19
Alignment explanation
Indices: 33725936--33725981 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
33725926 ATAAAAGTAG
* *
33725936 GAAAGAAAGAGATATGAGA
1 GAAAGAAAGAGACAGGAGA
33725955 GAAAGATAGAGAGACAGGAGA
1 GAAAGA-A-AGAGACAGGAGA
33725976 GAAAGA
1 GAAAGA
33725982 GATATAAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 1 0.04
21 16 0.70
ACGTcount: A:0.57, C:0.02, G:0.35, T:0.07
Consensus pattern (19 bp):
GAAAGAAAGAGACAGGAGA
Found at i:33726012 original size:36 final size:36
Alignment explanation
Indices: 33725934--33726005 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
33725924 AGATAAAAGT
* * *
33725934 AGGAAAGAAAGAGATATGAGAGAAAGATAGAGAGAC
1 AGGAGAGAAAGAGATATAAGAGAAAGATAGAAAGAC
*
33725970 AGGAGAGAAAGAGATATAAGAGAAATATAGAAAGAC
1 AGGAGAGAAAGAGATATAAGAGAAAGATAGAAAGAC
33726006 GAGAGAGGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.57, C:0.03, G:0.31, T:0.10
Consensus pattern (36 bp):
AGGAGAGAAAGAGATATAAGAGAAAGATAGAAAGAC
Found at i:33726182 original size:22 final size:23
Alignment explanation
Indices: 33726154--33726199 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
33726144 ATTTAATATT
33726154 TTCATATTTT-TAT-TCTATTTTC
1 TTCATATTTTAT-TCTCTATTTTC
33726176 TTCATATTTTATTCTCTATTTTC
1 TTCATATTTTATTCTCTATTTTC
33726199 T
1 T
33726200 ATATACTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.67
Consensus pattern (23 bp):
TTCATATTTTATTCTCTATTTTC
Found at i:33726197 original size:23 final size:22
Alignment explanation
Indices: 33726154--33726199 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
33726144 ATTTAATATT
33726154 TTCATATTTTTATTCTATTTTC
1 TTCATATTTTTATTCTATTTTC
33726176 TTCATA-TTTTATTCTCTATTTTC
1 TTCATATTTTTA-T-TCTATTTTC
33726199 T
1 T
33726200 ATATACTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.23
22 7 0.32
23 10 0.45
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.67
Consensus pattern (22 bp):
TTCATATTTTTATTCTATTTTC
Found at i:33726203 original size:21 final size:20
Alignment explanation
Indices: 33726150--33726203 Score: 58
Period size: 23 Copynumber: 2.6 Consensus size: 20
33726140 GAGAATTTAA
33726150 TATTTTC-ATATTTTTATTC
1 TATTTTCTATATTTTTATTC
33726169 TATTTTCT-TCATATTTTATTCTC
1 TATTTTCTAT-AT-TTTTA-T-TC
33726192 TATTTTCTATAT
1 TATTTTCTATAT
33726204 ACTCTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 8 0.28
20 2 0.07
21 5 0.17
22 1 0.03
23 12 0.41
24 1 0.03
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (20 bp):
TATTTTCTATATTTTTATTC
Found at i:33735384 original size:40 final size:39
Alignment explanation
Indices: 33735258--33735402 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 39
33735248 TGCTGGAAAT
* * * * *
33735258 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * * *
33735297 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-G
* *
33735338 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
33735377 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
33735403 CTTGGTGCGG
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 84 0.99
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
Found at i:33735427 original size:80 final size:81
Alignment explanation
Indices: 33735259--33735447 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
33735249 GCTGGAAATT
* * * *
33735259 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
33735324 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
33735340 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
33735403 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
33735419 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
33735448 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:33752916 original size:50 final size:46
Alignment explanation
Indices: 33752845--33752960 Score: 133
Period size: 46 Copynumber: 2.4 Consensus size: 46
33752835 TGTCTTCGAC
** * *
33752845 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTATCTCCAAAGCC----ATATATCTAAT
* * *
33752895 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTATCTCCAAAGCCATATATCTAAT
33752941 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
33752961 TCTGTCCTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 29 0.50
50 29 0.50
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTATCTCCAAAGCCATATATCTAAT
Found at i:33758720 original size:47 final size:47
Alignment explanation
Indices: 33758631--33758721 Score: 137
Period size: 47 Copynumber: 1.9 Consensus size: 47
33758621 AATCGATAAG
* * *
33758631 TACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCCTCACAAAA
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTACTCACAAAA
**
33758678 TACCTATACCATGGCCCATAGCCAAATCAAGGTATTTACTCACA
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTACTCACA
33758722 CCCAAAGTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.35, C:0.30, G:0.12, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTACTCACAAAA
Found at i:33761509 original size:24 final size:24
Alignment explanation
Indices: 33761465--33761510 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
33761455 AAAAGTTATT
* *
33761465 TAAAAAGATAAATAAAGATAAAAG
1 TAAAAAAATAAATAAAAATAAAAG
33761489 TAAAAAAAT-AATAAATAATAAA
1 TAAAAAAATAAATAAA-AATAAA
33761511 TAAAAGTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.20
Consensus pattern (24 bp):
TAAAAAAATAAATAAAAATAAAAG
Found at i:33762135 original size:19 final size:19
Alignment explanation
Indices: 33762108--33762155 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
33762098 TCAACTGGTG
* *
33762108 AACTAAACCGCCGAGACGA
1 AACTGAACCACCGAGACGA
* *
33762127 AACTGAACCACCGAGATGG
1 AACTGAACCACCGAGACGA
33762146 AACTGAACCA
1 AACTGAACCA
33762156 TTCTAGGATC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.42, C:0.29, G:0.21, T:0.08
Consensus pattern (19 bp):
AACTGAACCACCGAGACGA
Found at i:33763401 original size:13 final size:13
Alignment explanation
Indices: 33763383--33763407 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33763373 GTGTAGTGCA
33763383 CATGGCCGTGTCG
1 CATGGCCGTGTCG
33763396 CATGGCCGTGTC
1 CATGGCCGTGTC
33763408 TTGTTTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.36, T:0.24
Consensus pattern (13 bp):
CATGGCCGTGTCG
Found at i:33772040 original size:40 final size:39
Alignment explanation
Indices: 33771872--33772042 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
33771862 AGAAATTGAA
* *
33771872 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
33771912 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
33771952 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
33771992 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
33772032 TGATATCCGGG
1 TGATATCCGGG
33772043 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:33779958 original size:40 final size:39
Alignment explanation
Indices: 33779790--33779960 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
33779780 AGAAATTGAA
* *
33779790 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
33779830 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
33779870 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
33779910 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
33779950 TGATATCCGGG
1 TGATATCCGGG
33779961 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:33782977 original size:21 final size:20
Alignment explanation
Indices: 33782953--33783028 Score: 53
Period size: 21 Copynumber: 3.5 Consensus size: 20
33782943 CATCATGAAC
33782953 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTC-ATGAGT
* * **
33782974 TCAGATGTCACATATATCATGAAC
1 TCAGA--CCACA-A-CTCATGAGT
33782998 TCAGACCACAACTCGATGAGT
1 TCAGACCACAACTC-ATGAGT
*
33783019 TCAGATCACA
1 TCAGACCACA
33783029 TAATTCCGAG
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
20 2 0.05
21 19 0.46
22 4 0.10
23 4 0.10
24 10 0.24
25 2 0.05
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.22
Consensus pattern (20 bp):
TCAGACCACAACTCATGAGT
Found at i:33783002 original size:45 final size:45
Alignment explanation
Indices: 33782938--33783024 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
33782928 AACATGTGTT
33782938 ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTC
1 ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTC
* *
33782983 ACATATATCATGAACTCAGACCACAACTCGATGAGTTCAGAT
1 ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
33783025 CACATAATTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.23
Consensus pattern (45 bp):
ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTC
Found at i:33784633 original size:40 final size:40
Alignment explanation
Indices: 33784580--33784771 Score: 273
Period size: 40 Copynumber: 4.8 Consensus size: 40
33784570 GGATATAGCT
* *
33784580 ACTCGCTCGAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
33784620 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
33784660 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
33784700 ACTCGCA-ACAATGCCTTCGGGACTTAGCCTGGAATTAGTC
1 ACTCGCACA-AATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
33784740 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
33784772 TTATCATCCG
Statistics
Matches: 139, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 135 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:33793526 original size:92 final size:92
Alignment explanation
Indices: 33793415--33793584 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
33793405 GCCCCTAAGT
* *
33793415 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33793480 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
* *
33793507 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33793572 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33793585 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:33793581 original size:46 final size:46
Alignment explanation
Indices: 33793410--33793581 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
33793400 AACCCGCCCC
* * * *
33793410 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
33793456 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT---
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
33793503 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
33793548 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33793582 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
45 2 0.02
46 90 0.85
47 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:33793600 original size:46 final size:46
Alignment explanation
Indices: 33793412--33793600 Score: 144
Period size: 46 Copynumber: 4.1 Consensus size: 46
33793402 CCCGCCCCTA
* ** * *
33793412 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
33793457 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * *
33793505 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
33793550 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
33793596 AGTGA
1 AGTGA
33793601 CATGTCACTT
Statistics
Matches: 115, Mismatches: 12, Indels: 32
0.72 0.08 0.20
Matches are distributed among these distances:
44 8 0.07
45 3 0.03
46 95 0.83
47 1 0.01
48 3 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:33794029 original size:30 final size:30
Alignment explanation
Indices: 33793995--33794054 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
33793985 ATTTAATACG
33793995 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
33794025 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
33794055 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:33801082 original size:92 final size:92
Alignment explanation
Indices: 33800971--33801140 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
33800961 GCCCCTAAGT
* *
33800971 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33801036 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
33801063 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33801128 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33801141 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:33801137 original size:46 final size:46
Alignment explanation
Indices: 33800966--33801137 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
33800956 AACCCGCCCC
* * *
33800966 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
33801012 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
33801058 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
33801104 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33801138 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:33801156 original size:46 final size:46
Alignment explanation
Indices: 33800968--33801156 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
33800958 CCCGCCCCTA
* ** * *
33800968 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
33801013 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
33801061 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
33801106 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
33801152 AGTGA
1 AGTGA
33801157 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:33801580 original size:30 final size:30
Alignment explanation
Indices: 33801546--33801605 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
33801536 ATTTAATACG
33801546 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
33801576 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
33801606 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:33805103 original size:40 final size:40
Alignment explanation
Indices: 33805059--33805260 Score: 268
Period size: 40 Copynumber: 5.0 Consensus size: 40
33805049 CTGGATTTAA
* *
33805059 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
** *
33805099 CCGGATATAGTAGTTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
33805139 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
33805179 CCGGA-ATTAGTAACTCGCA-ACAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACA-AATGCCTTCGGGACTTAGC
* *
33805219 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
33805259 CC
1 CC
33805261 AGTTATCATC
Statistics
Matches: 146, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:33808393 original size:21 final size:21
Alignment explanation
Indices: 33808347--33808393 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 21
33808337 AAGTAGTTTT
*
33808347 GAAATGGAAAAGTAATGGATT
1 GAAATGGAAAAGTAATGGATG
33808368 GAAAT-GAAAAGT-ATGGTATG
1 GAAATGGAAAAGTAATGG-ATG
33808388 GTAAAT
1 G-AAAT
33808394 AGTTTCATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 4 0.17
20 10 0.43
21 9 0.39
ACGTcount: A:0.47, C:0.00, G:0.28, T:0.26
Consensus pattern (21 bp):
GAAATGGAAAAGTAATGGATG
Found at i:33808651 original size:30 final size:30
Alignment explanation
Indices: 33808615--33808675 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
33808605 GCACTCCATG
33808615 TTGGTGATTACATTACAGTACCATGTACTA
1 TTGGTGATTACATTACAGTACCATGTACTA
33808645 TTGGTGATTACATTACAGTACCATGTACTA
1 TTGGTGATTACATTACAGTACCATGTACTA
33808675 T
1 T
33808676 GTACTGGTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (30 bp):
TTGGTGATTACATTACAGTACCATGTACTA
Found at i:33816530 original size:93 final size:93
Alignment explanation
Indices: 33816402--33816572 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
33816392 GCCCATAAGT
* * *
33816402 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33816467 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
* *
33816495 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33816560 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33816573 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:33816569 original size:46 final size:46
Alignment explanation
Indices: 33816394--33816569 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
33816384 TGTAACCCGC
* * * * *
33816394 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
33816440 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGC-A--T
* ***
33816486 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
33816533 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33816570 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:33816588 original size:46 final size:45
Alignment explanation
Indices: 33816445--33816588 Score: 122
Period size: 46 Copynumber: 3.1 Consensus size: 45
33816435 CGCATCCATA
33816445 AGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCC-A---ACCATC-CT
* *
33816494 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
33816537 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
33816584 AGTGA
1 AGTGA
33816589 CATTTCACTT
Statistics
Matches: 80, Mismatches: 4, Indels: 25
0.73 0.04 0.23
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 36 0.45
47 27 0.34
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:33819150 original size:40 final size:40
Alignment explanation
Indices: 33819091--33819259 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
33819081 CGGGACTTTA
* * *
33819091 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
33819131 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
33819171 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
33819211 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
33819251 CCCGGATAT
1 CCCGGATAT
33819260 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:33827140 original size:40 final size:40
Alignment explanation
Indices: 33827081--33827248 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
33827071 CGGGACTTTA
* * *
33827081 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
33827121 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
33827161 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
33827201 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGG-CTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
33827240 CCCGGATAT
1 CCCGGATAT
33827249 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 14 0.13
40 86 0.81
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:33833918 original size:91 final size:92
Alignment explanation
Indices: 33833762--33833929 Score: 286
Period size: 91 Copynumber: 1.8 Consensus size: 92
33833752 CCCCCTAAGT
* *
33833762 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
33833827 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
33833854 GAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTC-GACTCAACTCAA
33833917 CGAGTTCGGATGC
65 CGAGTTCGGATGC
33833930 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
90 9 0.12
91 38 0.53
92 25 0.35
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33834382 original size:30 final size:30
Alignment explanation
Indices: 33834348--33834407 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
33834338 ATTTAATACG
33834348 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
33834378 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
33834408 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:33835416 original size:29 final size:29
Alignment explanation
Indices: 33835374--33835456 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 29
33835364 AAATTCACAT
*
33835374 ACCTGTATC-TGGCCCATTAGGCGCAAATC
1 ACCTGTA-CATGGCCCATTAGGCCCAAATC
* *
33835403 ACCTGTACATGGCCCACTAGGCCCAAGTC
1 ACCTGTACATGGCCCATTAGGCCCAAATC
* * *
33835432 ACATTTATATGGCCCATTAGGCCCA
1 ACCTGTACATGGCCCATTAGGCCCA
33835457 GCCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
28 1 0.02
29 45 0.98
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (29 bp):
ACCTGTACATGGCCCATTAGGCCCAAATC
Found at i:33835698 original size:8 final size:8
Alignment explanation
Indices: 33835687--33835723 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
33835677 ACTTTCGACT
33835687 TTTCGGCA
1 TTTCGGCA
*
33835695 TTTCGGCT
1 TTTCGGCA
33835703 TTTCGGCA
1 TTTCGGCA
*
33835711 TTTCAGCA
1 TTTCGGCA
33835719 TTTCG
1 TTTCG
33835724 ATTTTTGCCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.11, C:0.24, G:0.22, T:0.43
Consensus pattern (8 bp):
TTTCGGCA
Found at i:33835704 original size:16 final size:16
Alignment explanation
Indices: 33835679--33835714 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
33835669 GTAGCCGAAC
33835679 TTTCGACTTTTCGGCA
1 TTTCGACTTTTCGGCA
*
33835695 TTTCGGCTTTTCGGCA
1 TTTCGACTTTTCGGCA
33835711 TTTC
1 TTTC
33835715 AGCATTTCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.25, G:0.19, T:0.47
Consensus pattern (16 bp):
TTTCGACTTTTCGGCA
Found at i:33841216 original size:2 final size:2
Alignment explanation
Indices: 33841209--33841248 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
33841199 GCATGGCTAT
33841209 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33841249 CTCTGAAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:33866196 original size:17 final size:18
Alignment explanation
Indices: 33866154--33866202 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
33866144 AGTTGAAAAG
33866154 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
33866173 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
33866190 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
33866203 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:33867188 original size:40 final size:40
Alignment explanation
Indices: 33867024--33867190 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
33867014 AAATTGAATG
* * * **
33867024 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGA-AAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GATTGATT
* * * * **
33867063 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTGATT
* *
33867103 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-ATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTGATT
*
33867143 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTGATT
33867183 ATATCCGG
1 ATATCCGG
33867191 TTATATTCCG
Statistics
Matches: 103, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 17 0.17
40 85 0.83
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTGATT
Found at i:33867754 original size:19 final size:19
Alignment explanation
Indices: 33867713--33867751 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33867703 ACTTTAGACT
* *
33867713 AATGTTTATGTCATATTTG
1 AATGTATATGTCATATTGG
33867732 AATGTATATGTC-TATTGG
1 AATGTATATGTCATATTGG
33867750 AA
1 AA
33867752 ATGAGAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.31, C:0.05, G:0.18, T:0.46
Consensus pattern (19 bp):
AATGTATATGTCATATTGG
Found at i:33879971 original size:29 final size:29
Alignment explanation
Indices: 33879938--33880011 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
33879928 GTGACGAGAT
33879938 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
33879967 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
33879996 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33880012 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:33880027 original size:29 final size:28
Alignment explanation
Indices: 33879995--33880069 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
33879985 CTGGAAATAT
* *
33879995 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
33880024 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
33880052 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
33880070 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:33880038 original size:58 final size:57
Alignment explanation
Indices: 33879938--33880069 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
33879928 GTGACGAGAT
* * * * * *
33879938 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
33879996 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
33880053 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
33880070 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:33887239 original size:29 final size:29
Alignment explanation
Indices: 33887206--33887279 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
33887196 GTGACGAGAT
33887206 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
33887235 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
33887264 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33887280 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:33887295 original size:29 final size:29
Alignment explanation
Indices: 33887263--33887338 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
33887253 CTGGAAATAT
* *
33887263 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
33887292 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
33887321 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
33887339 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:33892473 original size:18 final size:18
Alignment explanation
Indices: 33892450--33892494 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
33892440 ACAAATGAAT
*
33892450 ATGTTTTATAATACTAGG
1 ATGTTTTATAATACTAGA
33892468 ATGTTTTATAATACTAGA
1 ATGTTTTATAATACTAGA
33892486 ATGTTTTAT
1 ATGTTTTAT
33892495 CAAATATATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.49
Consensus pattern (18 bp):
ATGTTTTATAATACTAGA
Found at i:33896868 original size:660 final size:660
Alignment explanation
Indices: 33895608--33896930 Score: 2547
Period size: 660 Copynumber: 2.0 Consensus size: 660
33895598 TGATACTTTG
*
33895608 ATAACTTTACAAATTAATTCCCAAAATTGATAGATTAAACTATTCCGATCACAAAAATATAAAAG
1 ATAACTTTACAAATTAATTCCCAAAATTGATAGATTAAACTATTCCGACCACAAAAATATAAAAG
33895673 TTACTAAAAACAGGACAAAAATTCATACCTAATTAAGCTTGATTAGTTTCCTTTCTCTCCCTTAG
66 TTACTAAAAACAGGACAAAAATTCATACCTAATTAAGCTTGATTAGTTTCCTTTCTCTCCCTTAG
33895738 GGTTTCCATGTAAATTTTGGGGAAGAAAATGATATCAAATGATGTTATTTGATATTTATTTTATT
131 GGTTTCCATGTAAATTTTGGGGAAGAAAATGATATCAAATGATGTTATTTGATATTTATTTTATT
*
33895803 TATCATCTTTAATGTTTCAACTTTCCAATTTCATCCTTTTCTTTTTCTAATTTTCAATGGATGAA
196 TATCACCTTTAATGTTTCAACTTTCCAATTTCATCCTTTTCTTTTTCTAATTTTCAATGGATGAA
*
33895868 TCACCAAAAATATCTACTAACTTTTATTTATTGGTCTAATTACCATATAAGGACCTCTCATTTTG
261 TCACCAAAAATATCTACTAACTTTTATTTAATGGTCTAATTACCATATAAGGACCTCTCATTTTG
*
33895933 AATTCCATAGCTATTTGATCCTTTTGCTACTAGAACTCAACTTTTGCATTTTATGCAATTTGGTC
326 AATTCCATAGCTATTTGATCCTTTTCCTACTAGAACTCAACTTTTGCATTTTATGCAATTTGGTC
33895998 CTTTCCCTAATTAAACACATAATCGATAAAATTTTATTATCAGAATTTTCATATAGCATTCCTAT
391 CTTTCCCTAATTAAACACATAATCGATAAAATTTTATTATCAGAATTTTCATATAGCATTCCTAT
*
33896063 CATAATGCGGACCATGCAATAATATTAAAATAAATTTTCTTTTTAACTCAGATTTGTGGTCCCGA
456 CATAATGAGGACCATGCAATAATATTAAAATAAATTTTCTTTTTAACTCAGATTTGTGGTCCCGA
33896128 AACCACTATTCTGATTTCACTGAAAACGAGCTGTTACAACTCTCCCCCTTTAAAAATTTTTGTCC
521 AACCACTATTCTGATTTCACTGAAAACGAGCTGTTACAACTCTCCCCCTTTAAAAATTTTTGTCC
33896193 TTGAAAATCTTACCATTAAAGAGGTTTGGGTATTGCTTTCTCATGGTATCCTCTGGTTCCTAGGT
586 TTGAAAATCTTACCATTAAAGAGGTTTGGGTATTGCTTTCTCATGGTATCCTCTGGTTCCTAGGT
33896258 AGCCTCCTCT
651 AGCCTCCTCT
33896268 ATAACTTTACAAATTAATTCCCAAAATTGATAGATTAAACTATTCCGACCACAAAAATATAAAAG
1 ATAACTTTACAAATTAATTCCCAAAATTGATAGATTAAACTATTCCGACCACAAAAATATAAAAG
* * *
33896333 TTACTAAAAACGGGACAAAAATTCTTACCTAATTAAGCTTGCTTAGTTTCCTTTCTCTCCCTTAG
66 TTACTAAAAACAGGACAAAAATTCATACCTAATTAAGCTTGATTAGTTTCCTTTCTCTCCCTTAG
33896398 GGTTTCCATGTAAATTTTGGGGAAGAAAATGATATCAAATGATGTTATTTGATATTTATTTTATT
131 GGTTTCCATGTAAATTTTGGGGAAGAAAATGATATCAAATGATGTTATTTGATATTTATTTTATT
33896463 TATCACCTTTAATGTTTCAACTTTCCAATTTCATCCTTTTCTTTTTCTAATTTTCAATGGATGAA
196 TATCACCTTTAATGTTTCAACTTTCCAATTTCATCCTTTTCTTTTTCTAATTTTCAATGGATGAA
33896528 TCACCAAAAATATCTACTAACTTTTATTTAATGGTCTAATTACCATATAAGGACCTCTCATTTTG
261 TCACCAAAAATATCTACTAACTTTTATTTAATGGTCTAATTACCATATAAGGACCTCTCATTTTG
* *
33896593 AATTCTATAGCTATTTGATCCTTTTCCTACTAGAACTCAACTTTTTCATTTTATGCAATTTGGTC
326 AATTCCATAGCTATTTGATCCTTTTCCTACTAGAACTCAACTTTTGCATTTTATGCAATTTGGTC
33896658 CTTTCCCTAATTAAACACATAATCGATAAAATTTTATTATCAGAATTTTCATATAGCATTCCTAT
391 CTTTCCCTAATTAAACACATAATCGATAAAATTTTATTATCAGAATTTTCATATAGCATTCCTAT
33896723 CATAATGAGGACCATGCAATAATATTAAAATAAATTTTCTTTTTAACTCAGATTTGTGGTCCCGA
456 CATAATGAGGACCATGCAATAATATTAAAATAAATTTTCTTTTTAACTCAGATTTGTGGTCCCGA
*
33896788 AACCACTATTCTGATTTCACTGAAAACGAGTTGTTACAACTCTCCCCCTTTAAAAATTTTTGTCC
521 AACCACTATTCTGATTTCACTGAAAACGAGCTGTTACAACTCTCCCCCTTTAAAAATTTTTGTCC
33896853 TTGAAAATCTTACCATTAAAGAGGTTTGGGTATTGCTTTCTCATGGTATCCTCTGGTTCCTAGGT
586 TTGAAAATCTTACCATTAAAGAGGTTTGGGTATTGCTTTCTCATGGTATCCTCTGGTTCCTAGGT
33896918 AGCCTCCTCT
651 AGCCTCCTCT
33896928 ATA
1 ATA
33896931 CCATGTCGTT
Statistics
Matches: 652, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
660 652 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.39
Consensus pattern (660 bp):
ATAACTTTACAAATTAATTCCCAAAATTGATAGATTAAACTATTCCGACCACAAAAATATAAAAG
TTACTAAAAACAGGACAAAAATTCATACCTAATTAAGCTTGATTAGTTTCCTTTCTCTCCCTTAG
GGTTTCCATGTAAATTTTGGGGAAGAAAATGATATCAAATGATGTTATTTGATATTTATTTTATT
TATCACCTTTAATGTTTCAACTTTCCAATTTCATCCTTTTCTTTTTCTAATTTTCAATGGATGAA
TCACCAAAAATATCTACTAACTTTTATTTAATGGTCTAATTACCATATAAGGACCTCTCATTTTG
AATTCCATAGCTATTTGATCCTTTTCCTACTAGAACTCAACTTTTGCATTTTATGCAATTTGGTC
CTTTCCCTAATTAAACACATAATCGATAAAATTTTATTATCAGAATTTTCATATAGCATTCCTAT
CATAATGAGGACCATGCAATAATATTAAAATAAATTTTCTTTTTAACTCAGATTTGTGGTCCCGA
AACCACTATTCTGATTTCACTGAAAACGAGCTGTTACAACTCTCCCCCTTTAAAAATTTTTGTCC
TTGAAAATCTTACCATTAAAGAGGTTTGGGTATTGCTTTCTCATGGTATCCTCTGGTTCCTAGGT
AGCCTCCTCT
Found at i:33899817 original size:10 final size:10
Alignment explanation
Indices: 33899799--33899837 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
33899789 AATGTAAGGT
*
33899799 ATAATATATA
1 ATAAAATATA
33899809 ATAAAATATAA
1 ATAAAATAT-A
33899820 ATAAAATATA
1 ATAAAATATA
*
33899830 ATGAAATA
1 ATAAAATA
33899838 AAAATACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (10 bp):
ATAAAATATA
Found at i:33899823 original size:21 final size:21
Alignment explanation
Indices: 33899799--33899843 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
33899789 AATGTAAGGT
* *
33899799 ATAATATATAATAAAATATAA
1 ATAAAATATAATAAAATAAAA
*
33899820 ATAAAATATAATGAAATAAAA
1 ATAAAATATAATAAAATAAAA
33899841 ATA
1 ATA
33899844 CTATCATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (21 bp):
ATAAAATATAATAAAATAAAA
Found at i:33899824 original size:11 final size:11
Alignment explanation
Indices: 33899801--33899843 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
33899791 TGTAAGGTAT
33899801 AATATATAATAA
1 AATATA-AATAA
33899813 AATATAAATAA
1 AATATAAATAA
*
33899824 AATAT-AATGA
1 AATATAAATAA
*
33899834 AATAAAAATA
1 AATATAAATA
33899844 CTATCATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 8 0.30
11 13 0.48
12 6 0.22
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (11 bp):
AATATAAATAA
Found at i:33899992 original size:34 final size:36
Alignment explanation
Indices: 33899927--33899998 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 36
33899917 ATTTATAAAA
**
33899927 AATAAAAATAAAATATAATTTATAAGTAAAAT-ATAT
1 AATAAAAAT-AAATATAATGGATAAGTAAAATAATAT
33899963 AATAAAAAT-AATATAATGGATAA-TAAAAATAATAT
1 AATAAAAATAAATATAATGGATAAGT-AAAATAATAT
33899998 A
1 A
33899999 CATTATTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
33 1 0.03
34 17 0.53
35 5 0.16
36 9 0.28
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (36 bp):
AATAAAAATAAATATAATGGATAAGTAAAATAATAT
Found at i:33900067 original size:18 final size:19
Alignment explanation
Indices: 33900046--33900082 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
33900036 ATATATAAGG
33900046 TATTTA-AAATAA-ATTAAA
1 TATTTATAAA-AAGATTAAA
33900064 TATTTATAAAAAGATTAAA
1 TATTTATAAAAAGATTAAA
33900083 ATTGAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
TATTTATAAAAAGATTAAA
Found at i:33900573 original size:13 final size:14
Alignment explanation
Indices: 33900555--33900583 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
33900545 AAATGGGAGA
33900555 CCTCCGGCCTC-GG
1 CCTCCGGCCTCAGG
33900568 CCTCCGGCCTCAGG
1 CCTCCGGCCTCAGG
33900582 CC
1 CC
33900584 ACTGTACCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.03, C:0.55, G:0.28, T:0.14
Consensus pattern (14 bp):
CCTCCGGCCTCAGG
Found at i:33901914 original size:44 final size:44
Alignment explanation
Indices: 33901855--33901960 Score: 185
Period size: 44 Copynumber: 2.4 Consensus size: 44
33901845 CTCTCCGTTG
*
33901855 AATATAGAGATGCCAAATTTGTTATCTTCGATCTGCTCTCTAAC
1 AATATAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTAAC
* *
33901899 AATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTGAC
1 AATATAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTAAC
33901943 AATATAGAGATGCCAAAT
1 AATATAGAGATGCCAAAT
33901961 CATCTTAGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (44 bp):
AATATAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTAAC
Found at i:33902132 original size:265 final size:266
Alignment explanation
Indices: 33901659--33902228 Score: 769
Period size: 265 Copynumber: 2.2 Consensus size: 266
33901649 ACCATGTTGA
* * *
33901659 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCC-AA-ATCTTGGATCTACTTCAGCGTAAAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATATCTTAGATCTACTTCAGCATAAAC
* * *
33901722 ACGTGAAAGCCAAATCAGCTATATCTTCAATTTGCTCCTTGTAAACGCAAGGATGCCAAATCATC
66 ACGTGAAAGCCAAATCAGCTACATCTTCAATCTGCTCCTTATAAACGCAAGGATGCCAAATCATC
* * *
33901787 TTGGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTAGATCTGCTCTCCG
131 TTGGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTCAGATCTACTCTCCA
* * * *
33901852 TTGAATATAGAGATGCCAAATTTGTTATCTTCGATCTGC-TC-TCT-AACA-ATACAGAGATGCC
196 TCGAATATAGAGATGCCAAATCTGTTATCTTCGATCTGCTTCATCTGAAAACATACA-A-AGGCC
*
33901913 AAATTTGC
259 AAATCTGC
* *
33901921 TATCTTCGATCTGCTCTCTGACAATATAGAGATGCCAAATCATCTTAGATCTGCTTCAGCATAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT-ATCTTAGATCTACTTCAGCATAAA
* * *
33901986 CATGTGAAAGCCAAATCTGCTACGTCTTCGAA-CTGCTCCTTATAAACGCAAGGATGCCAAATCA
65 CACGTGAAAGCCAAATCAGCTACATCTTC-AATCTGCTCCTTATAAACGCAAGGATGCCAAATCA
* *
33902050 TCTTGGATCTACTTCGATGT-AGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTACTCT
129 TCTTGGATCTACTTCGATGTGA-AAACATCCAAAGGTTAGATCTGCTATGTCTCAGATCTACTCT
* * * * *
33902114 CCATCGGATATGGAGATGCCAAATCTGTTATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGG
193 CCATCGAATATAGAGATGCCAAATCTGTTATCTTCGATCTGCTTC-ATCTGAAAACATACAAAGG
* *
33902179 TCAGATCTGC
257 CCAAATCTGC
*
33902189 TATCTTCGATCTGGTCTCTGACAATACAGAGATGCCAAAT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT
33902229 TTGCTATATT
Statistics
Matches: 268, Mismatches: 30, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
262 34 0.13
263 2 0.01
264 1 0.00
265 170 0.63
266 4 0.01
268 49 0.18
269 4 0.01
270 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (266 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATATCTTAGATCTACTTCAGCATAAAC
ACGTGAAAGCCAAATCAGCTACATCTTCAATCTGCTCCTTATAAACGCAAGGATGCCAAATCATC
TTGGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTCAGATCTACTCTCCA
TCGAATATAGAGATGCCAAATCTGTTATCTTCGATCTGCTTCATCTGAAAACATACAAAGGCCAA
ATCTGC
Found at i:33902241 original size:44 final size:44
Alignment explanation
Indices: 33902186--33902272 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
33902176 AGGTCAGATC
* *
33902186 TGCTATCTTCGATCTGGTCTCTGACAATACAGAGATGCCAAATT
1 TGCTATATTCGATCTGCTCTCTGACAATACAGAGATGCCAAATT
33902230 TGCTATATTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT
1 TGCTATATTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT
33902273 CATCTTAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (44 bp):
TGCTATATTCGATCTGCTCTCTGACAATACAGAGATGCCAAATT
Found at i:33902445 original size:312 final size:312
Alignment explanation
Indices: 33901877--33902633 Score: 1289
Period size: 312 Copynumber: 2.4 Consensus size: 312
33901867 CCAAATTTGT
*
33901877 TATCTTCGATCTGCTCTCTAACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTGA
* * *
33901942 CAATATAGAGATGCCAAATCATCTTAGATCTGCTTCAGCATAAACATGTGAAAGCCAAATCTGCT
66 CAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAACACGTGAAAGCCAAATCTGCT
*
33902007 ACGTCTTCGAACTGCTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTAG
131 ATGTCTTCGAACTGCTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTAG
* **
33902072 AAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCATCGGATATGGAGATGCCAAA
196 AAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCATCGAATATACAGATGCCAAA
*
33902137 TCTGTTATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGC
261 TCTGTTATCTTGGATCTGCTTCGACGTGAAAACATCCAAAGGTCAGATCTGC
* *
33902189 TATCTTCGATCTGGTCTCTGACAATACAGAGATGCCAAATTTGCTATATTCGATCTGCTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTGA
* *
33902254 CAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAACACATAAAAGCCAAATCTGCT
66 CAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAACACGTGAAAGCCAAATCTGCT
* * *
33902319 ATGTCTTCGATCTGCTCCTTATAAATGCAATGATGCCAAATCATCTTGGATCTACTTCGATGTAG
131 ATGTCTTCGAACTGCTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTAG
* * *
33902384 AAACATCCGAAGGTTAGATTTGCTATGTCTCCGATCTGCTCTCCGTCGAATATACAGATGCCAAA
196 AAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCATCGAATATACAGATGCCAAA
* **
33902449 TCTGTTATCTTGGATCTGTTTCGACGTGAAAACATCTGAAGGTCAGATCTGC
261 TCTGTTATCTTGGATCTGCTTCGACGTGAAAACATCCAAAGGTCAGATCTGC
* *
33902501 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTACTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTGA
*
33902566 CAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCT
66 CAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAACACGTGAAAGCCAAATCTGCT
33902631 ATG
131 ATG
33902634 CTTTAGCCTG
Statistics
Matches: 416, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
312 416 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (312 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTGA
CAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAACACGTGAAAGCCAAATCTGCT
ATGTCTTCGAACTGCTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTAG
AAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCATCGAATATACAGATGCCAAA
TCTGTTATCTTGGATCTGCTTCGACGTGAAAACATCCAAAGGTCAGATCTGC
Found at i:33902482 original size:94 final size:91
Alignment explanation
Indices: 33902361--33902559 Score: 238
Period size: 94 Copynumber: 2.2 Consensus size: 91
33902351 ATGCCAAATC
* * *
33902361 ATCTTGGATCTACTTCGATGTAGAAACATCCGAAGGTTAGATTTGCTATGTCTCCGATCTGCTCT
1 ATCTTGGATCTACTTCGACGTAGAAACATCCGAAGGTCAGATCTGCTA--TCTCCGATCTGCTCT
* * *
33902426 CCGTCGAATATACAGATGCCAAATCTGTT
64 CCGAC-AATACACAGATGCCAAATCTGCT
** * *
33902455 ATCTTGGATCTGTTTCGACGT-GAAAACATCTGAAGGTCAGATCTGCTATCTTCGATCTGCTCTC
1 ATCTTGGATCTACTTCGACGTAG-AAACATCCGAAGGTCAGATCTGCTATCTCCGATCTGCTCTC
* *
33902519 TGACAATACAGAGATGCCAAATCTGCT
65 CGACAATACACAGATGCCAAATCTGCT
*
33902546 ATCTTCGATCTACT
1 ATCTTGGATCTACT
33902560 CTCTGACAAT
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
91 31 0.35
92 17 0.19
93 1 0.01
94 40 0.45
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (91 bp):
ATCTTGGATCTACTTCGACGTAGAAACATCCGAAGGTCAGATCTGCTATCTCCGATCTGCTCTCC
GACAATACACAGATGCCAAATCTGCT
Found at i:33902550 original size:44 final size:44
Alignment explanation
Indices: 33902495--33902585 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
33902485 TGAAGGTCAG
*
33902495 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGATGCCAA
33902539 ATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGATGCCAA
33902583 ATC
1 ATC
33902586 ATCTTAGATT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGATGCCAA
Found at i:33904933 original size:13 final size:13
Alignment explanation
Indices: 33904917--33904949 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
33904907 CAAAACTAGG
33904917 AAGAAAAAGAAAA
1 AAGAAAAAGAAAA
*
33904930 AAGAAAAAGAGAA
1 AAGAAAAAGAAAA
33904943 AAGAAAA
1 AAGAAAA
33904950 GCTTCATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAGAAAAAGAAAA
Found at i:33906243 original size:40 final size:40
Alignment explanation
Indices: 33906232--33906405 Score: 224
Period size: 40 Copynumber: 4.4 Consensus size: 40
33906222 ATGCTAATGA
* *
33906232 TTATATCCGGGCTAAGACTCGAAGGCATTCGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
33906272 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
** *
33906312 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGAAAGTTA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
** * * * ** *
33906352 CCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
33906392 TTATATCC-GGCTAA
1 TTATATCCGGGCTAA
33906406 ATTCTGAAGA
Statistics
Matches: 115, Mismatches: 19, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 5 0.04
40 110 0.96
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:33912547 original size:39 final size:40
Alignment explanation
Indices: 33912504--33912641 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 40
33912494 GGACTAGGAT
*
33912504 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
* * *
33912543 CCGAAGGCATT-GTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
*** **
33912582 CCGAAGGCATTCGTGCGAGTCGCTATAA-CCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGCTAAGTC
* *
33912622 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
33912642 CGTTATATCC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 22 0.26
39 23 0.27
40 37 0.44
41 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
Found at i:33912586 original size:78 final size:79
Alignment explanation
Indices: 33912452--33912632 Score: 199
Period size: 78 Copynumber: 2.3 Consensus size: 79
33912442 TCGAATGATG
* * * *
33912452 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCGGACTAGGATCCGAAGGCATTCG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCGGACTAAGATCCGAAGGCATTCG
33912517 TGCGAGTTAATAAA
66 TGCGAGTTAATAAA
* **
33912531 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAA-CCGGACTAAGAT-CCGAAGGCATT
***
33912593 CGTGCGAGTCGCTATAA
64 CGTGCGAGTTAATA-AA
**
33912610 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33912633 TGAGCGAGTC
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
77 10 0.12
78 51 0.59
79 25 0.29
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCGGACTAAGATCCGAAGGCATTCG
TGCGAGTTAATAAA
Found at i:33917625 original size:40 final size:40
Alignment explanation
Indices: 33917580--33917786 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
33917570 TGAATGATAC
* ** * *
33917580 CCGGGCTAAGTCCCGAAGGCATTTATGCTA-ATGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
33917620 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
33917660 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* * *** *
33917700 CC-GGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* ** *
33917739 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
33917779 CC-GGCTAA
1 CCGGGCTAA
33917787 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 38 0.26
40 101 0.70
41 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:33917795 original size:79 final size:79
Alignment explanation
Indices: 33917580--33917786 Score: 254
Period size: 79 Copynumber: 2.6 Consensus size: 79
33917570 TGAATGATAC
* * * * *
33917580 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCC-GGCTAAGACCCGAAGGCATTCG
* *** *
33917645 TGCGAGTTGTTATAT
65 TGCAAGTTACCAAAT
* * *
33917660 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGCTAAGACCCGAAGGCATTCG
33917724 TGCAAGTTACCAAAT
65 TGCAAGTTACCAAAT
* *
33917739 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGCTAA
33917787 ATTCCGAAGA
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 73 0.68
80 35 0.32
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGCTAAGACCCGAAGGCATTCGT
GCAAGTTACCAAAT
Found at i:33927179 original size:20 final size:20
Alignment explanation
Indices: 33927149--33927235 Score: 138
Period size: 20 Copynumber: 4.3 Consensus size: 20
33927139 ATTTTAGTAA
* *
33927149 ACATGGTATGTGTGATATGC
1 ACATGATATGTATGATATGC
* *
33927169 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
33927189 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33927209 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33927229 ACATGAT
1 ACATGAT
33927236 GTATTCATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.