Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 114 of 410
Found at i:33927214 original size:11 final size:11
Alignment explanation
Indices: 33927161--33927235 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
33927151 ATGGTATGTG
33927161 TGATATGCACA
1 TGATATGCACA
* *
33927172 TGACATG--TA
1 TGATATGCACA
*
33927181 TGCTATGCACA
1 TGATATGCACA
*
33927192 TGATATG--TA
1 TGATATGCACA
33927201 TGATATGCACA
1 TGATATGCACA
*
33927212 TGATATG--TA
1 TGATATGCACA
33927221 TGATATGCACA
1 TGATATGCACA
33927232 TGAT
1 TGAT
33927236 GTATTCATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (11 bp):
TGATATGCACA
Found at i:33927364 original size:24 final size:24
Alignment explanation
Indices: 33927285--33927388 Score: 167
Period size: 23 Copynumber: 4.4 Consensus size: 24
33927275 GAGGAAGTGC
*
33927285 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
33927309 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
33927332 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
33927355 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
33927379 AAAAGAGGCT
1 AAAAG-GGCT
33927389 AGGCCTCTAG
Statistics
Matches: 76, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
23 45 0.59
24 27 0.36
25 4 0.05
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:33927378 original size:47 final size:46
Alignment explanation
Indices: 33927286--33927381 Score: 165
Period size: 47 Copynumber: 2.1 Consensus size: 46
33927276 AGGAAGTGCA
*
33927286 AAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
33927332 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
33927379 AAA
1 AAA
33927382 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 22 0.47
47 25 0.53
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:33927629 original size:31 final size:31
Alignment explanation
Indices: 33927594--33927657 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
33927584 CGTTTACAGT
33927594 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
33927625 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
33927656 AA
1 AA
33927658 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:33935312 original size:20 final size:20
Alignment explanation
Indices: 33935246--33935312 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
33935236 ATTTTAGTAA
*
33935246 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
33935266 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
33935286 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33935306 ACATGAT
1 ACATGAT
33935313 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:33935393 original size:23 final size:23
Alignment explanation
Indices: 33935363--33935435 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
33935353 AGGAAGTGCA
33935363 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
33935386 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
33935409 AAAAGGGCTTTTGCCCCAATTATT
1 -AAAGGGCTTATGCCCCAGTTATT
33935433 AAA
1 AAA
33935436 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:33935418 original size:24 final size:24
Alignment explanation
Indices: 33935362--33935442 Score: 128
Period size: 24 Copynumber: 3.4 Consensus size: 24
33935352 AAGGAAGTGC
33935362 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
33935386 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
33935409 AAAAGGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
33935433 AAAAGAGGCT
1 AAAAG-GGCT
33935443 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
23 23 0.43
24 26 0.49
25 4 0.08
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:33935685 original size:31 final size:31
Alignment explanation
Indices: 33935650--33935713 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
33935640 CGTTTACAGT
33935650 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTTGGCCCAGTAATATGAAATATGA
**
33935681 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTTGGCCCAGTAATATGAAATATGA
33935712 AA
1 AA
33935714 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTAATATGAAATATGA
Found at i:33939137 original size:21 final size:21
Alignment explanation
Indices: 33939113--33939157 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
33939103 AATGTAAGGT
* *
33939113 ATAATATATAATAAAATATAA
1 ATAAAATATAATAAAATAAAA
*
33939134 ATAAAATATAATGAAATAAAA
1 ATAAAATATAATAAAATAAAA
33939155 ATA
1 ATA
33939158 CTATCATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (21 bp):
ATAAAATATAATAAAATAAAA
Found at i:33939138 original size:11 final size:11
Alignment explanation
Indices: 33939115--33939157 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
33939105 TGTAAGGTAT
33939115 AATATATAATAA
1 AATATA-AATAA
33939127 AATATAAATAA
1 AATATAAATAA
*
33939138 AATAT-AATGA
1 AATATAAATAA
*
33939148 AATAAAAATA
1 AATATAAATA
33939158 CTATCATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 8 0.30
11 13 0.48
12 6 0.22
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (11 bp):
AATATAAATAA
Found at i:33939150 original size:10 final size:10
Alignment explanation
Indices: 33939113--33939151 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
33939103 AATGTAAGGT
*
33939113 ATAATATATA
1 ATAAAATATA
33939123 ATAAAATATAA
1 ATAAAATAT-A
33939134 ATAAAATATA
1 ATAAAATATA
*
33939144 ATGAAATA
1 ATAAAATA
33939152 AAAATACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (10 bp):
ATAAAATATA
Found at i:33939231 original size:7 final size:6
Alignment explanation
Indices: 33939212--33939321 Score: 50
Period size: 6 Copynumber: 17.8 Consensus size: 6
33939202 TTTACACAAT
* * *
33939212 TAATGAA TAATAA TACATAA TTTATAA AAATAA AAATAA -AATATA TAATAA
1 TAAT-AA TAATAA TA-ATAA -TAATAA TAATAA TAATAA TAATA-A TAATAA
* * *
33939263 -AAT-A TAATTTA TAAGTAA -AATATA TAATAA AAATAA T-ATAA TGGATAA
1 TAATAA TAA-TAA TAA-TAA TAATA-A TAATAA TAATAA TAATAA T-AATAA
*
33939311 TAAAAA TAATA
1 TAATAA TAATA
33939322 TGCATTATTT
Statistics
Matches: 82, Mismatches: 10, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
4 1 0.01
5 16 0.20
6 33 0.40
7 31 0.38
8 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.32
Consensus pattern (6 bp):
TAATAA
Found at i:33939263 original size:18 final size:18
Alignment explanation
Indices: 33939240--33939319 Score: 64
Period size: 21 Copynumber: 4.6 Consensus size: 18
33939230 AATTTATAAA
33939240 AATAAAAATAAAATATAT
1 AATAAAAATAAAATATAT
*
33939258 AAT-AAAATATAAT-T-T
1 AATAAAAATAAAATATAT
*
33939273 -AT--AAGTAAAATATAT
1 AATAAAAATAAAATATAT
*
33939288 AATAAAAATAATATAATGGAT
1 AATAAAAATAAAAT-AT--AT
33939309 AATAAAAATAA
1 AATAAAAATAA
33939320 TATGCATTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
13 7 0.14
14 3 0.06
15 2 0.04
16 3 0.06
17 9 0.18
18 10 0.20
19 2 0.04
21 13 0.27
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (18 bp):
AATAAAAATAAAATATAT
Found at i:33939317 original size:34 final size:34
Alignment explanation
Indices: 33939240--33939319 Score: 83
Period size: 34 Copynumber: 2.3 Consensus size: 34
33939230 AATTTATAAA
* **
33939240 AATAAAAATAAAATATATAATAAAATATAATTTAT
1 AATAAAAAT-AAATATATAAAAAAATATAATGGAT
*
33939275 AAGT-AAAATATATA-ATAAAAATAATATAATGGAT
1 AA-TAAAAATAAATATATAAAAA-AATATAATGGAT
33939309 AATAAAAATAA
1 AATAAAAATAA
33939320 TATGCATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
33 7 0.19
34 22 0.59
35 7 0.19
36 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (34 bp):
AATAAAAATAAATATATAAAAAAATATAATGGAT
Found at i:33939392 original size:18 final size:19
Alignment explanation
Indices: 33939371--33939407 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
33939361 ATATATAAGG
33939371 TATTTA-AAATAA-ATTAAA
1 TATTTATAAA-AAGATTAAA
33939389 TATTTATAAAAAGATTAAA
1 TATTTATAAAAAGATTAAA
33939408 ATTGAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
TATTTATAAAAAGATTAAA
Found at i:33940080 original size:50 final size:50
Alignment explanation
Indices: 33939986--33940086 Score: 150
Period size: 50 Copynumber: 2.0 Consensus size: 50
33939976 AAATCTCGGG
*** *
33939986 TAATATCCTCTCCCTTTTAAACTTTACTTTTTTTGTTTTTAAAAATGGTT
1 TAATATCCTCTCCCTTTTAAACTTTACTTTTTTTGTTAAAAAAAATAGTT
33940036 TAATATCCTCTCCCTTTTAAACTTTACTTTTTTT-TTAAAAAAAAATAGTT
1 TAATATCCTCTCCCTTTTAAACTTTACTTTTTTTGTT-AAAAAAAATAGTT
33940086 T
1 T
33940087 CTGTGCGTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 2 0.04
50 44 0.96
ACGTcount: A:0.29, C:0.16, G:0.04, T:0.51
Consensus pattern (50 bp):
TAATATCCTCTCCCTTTTAAACTTTACTTTTTTTGTTAAAAAAAATAGTT
Found at i:33943567 original size:11 final size:11
Alignment explanation
Indices: 33943551--33943577 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
33943541 TAATTAGCCA
33943551 TATAAGATCAT
1 TATAAGATCAT
33943562 TATAAGATCAT
1 TATAAGATCAT
33943573 TATAA
1 TATAA
33943578 TGTATAGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.37
Consensus pattern (11 bp):
TATAAGATCAT
Found at i:33956474 original size:53 final size:53
Alignment explanation
Indices: 33956410--33956515 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
33956400 CTATGATAGC
*
33956410 TTACTGTGTGTATAATTGCTTCTGTTTTATAGATTTTGGATTCAAGGTACGAG
1 TTACTATGTGTATAATTGCTTCTGTTTTATAGATTTTGGATTCAAGGTACGAG
33956463 TTACTATGTGTATAATTGCTTCTGTTTTATAGATTTTGGATTCAAGGTACGAG
1 TTACTATGTGTATAATTGCTTCTGTTTTATAGATTTTGGATTCAAGGTACGAG
33956516 CCCGGGATCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.45
Consensus pattern (53 bp):
TTACTATGTGTATAATTGCTTCTGTTTTATAGATTTTGGATTCAAGGTACGAG
Found at i:33962186 original size:8 final size:8
Alignment explanation
Indices: 33962169--33962201 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
33962159 GCCAATCCTA
33962169 AAATGCCG
1 AAATGCCG
*
33962177 AAATGTCG
1 AAATGCCG
33962185 AAATGCCG
1 AAATGCCG
33962193 AAATGCCG
1 AAATGCCG
33962201 A
1 A
33962202 GAACCCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.15
Consensus pattern (8 bp):
AAATGCCG
Found at i:33962458 original size:29 final size:28
Alignment explanation
Indices: 33962402--33962488 Score: 113
Period size: 29 Copynumber: 3.1 Consensus size: 28
33962392 TGAGCATGAC
*
33962402 TATAAAAGTGATT-GGCCTAGTGGACCA
1 TATAAAAGTGATTGGGCCTAGTGGGCCA
*
33962429 TATAAAAGTGATTGGGGCCTAATGGGCCA
1 TATAAAAGTGATT-GGGCCTAGTGGGCCA
* * *
33962458 TATGAAAGAGATTGGGCCTTGTGGGCCA
1 TATAAAAGTGATTGGGCCTAGTGGGCCA
33962486 TAT
1 TAT
33962489 GTAGGTATGT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 13 0.25
28 16 0.31
29 23 0.44
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (28 bp):
TATAAAAGTGATTGGGCCTAGTGGGCCA
Found at i:33966064 original size:27 final size:26
Alignment explanation
Indices: 33966020--33966071 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
33966010 CTCACTGCAA
*
33966020 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
33966047 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
33966072 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:33975609 original size:31 final size:31
Alignment explanation
Indices: 33975558--33975637 Score: 101
Period size: 31 Copynumber: 2.5 Consensus size: 31
33975548 TCAAACATAT
33975558 ACTGGGCC-ATAGCCCTTTTCATA-TTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCA-AGTTTCATAAC
**
33975590 ACTGGGCCGAAGCCTTTTCAAGTTTCATATT
1 ACTGGGCCGAAGCCTTTTCAAGTTTCATAAC
33975621 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
33975638 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
30 1 0.02
31 32 0.73
32 10 0.23
33 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.33
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCAAGTTTCATAAC
Found at i:33975884 original size:24 final size:24
Alignment explanation
Indices: 33975832--33976044 Score: 290
Period size: 24 Copynumber: 9.0 Consensus size: 24
33975822 GCTTTATCAT
*
33975832 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
33975857 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
33975881 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
** *
33975904 ATAACTGGGGCGCAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
33975928 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
** *
33975951 ATAACTGGGGCGCAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
33975975 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
33975999 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
33976022 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
33976045 TCACTTCCTC
Statistics
Matches: 167, Mismatches: 17, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
23 62 0.37
24 93 0.56
25 12 0.07
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:33976044 original size:47 final size:48
Alignment explanation
Indices: 33975832--33976044 Score: 308
Period size: 47 Copynumber: 4.5 Consensus size: 48
33975822 GCTTTATCAT
* * *
33975832 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCACAAGCCCTTTTG
*
33975881 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGCAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCACAAGCCCTTTTG
*
33975928 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGCAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCACAAGCCCTTTTG
* * *
33975975 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCACAAGCCCTTTTG
33976022 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
33976045 TCACTTCCTC
Statistics
Matches: 154, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
47 117 0.76
48 25 0.16
49 12 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCACAAGCCCTTTTG
Found at i:33976044 original size:71 final size:71
Alignment explanation
Indices: 33975832--33976044 Score: 304
Period size: 71 Copynumber: 3.0 Consensus size: 71
33975822 GCTTTATCAT
* * * *
33975832 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAA
33975896 GCCC-TTTA
63 GCCCTTTTA
** **
33975904 ATAACTGGGGCGCAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCGCAAGCC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
33975969 CTTTTG
66 CTTTTA
33975975 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
33976040 CTTTT
66 CTTTT
33976045 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
70 20 0.16
71 95 0.75
72 12 0.09
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
CTTTTA
Found at i:33976122 original size:20 final size:20
Alignment explanation
Indices: 33976099--33976201 Score: 197
Period size: 20 Copynumber: 5.2 Consensus size: 20
33976089 GAACATCTCG
33976099 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
33976119 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
33976139 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
33976159 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
33976179 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
33976199 TGT
1 TGT
33976202 TTATCAAAAT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 81 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:33976284 original size:25 final size:25
Alignment explanation
Indices: 33976238--33976285 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
33976228 ATATATAAAC
* * * *
33976238 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
33976263 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
33976286 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:33977544 original size:27 final size:27
Alignment explanation
Indices: 33977525--33977972 Score: 383
Period size: 27 Copynumber: 16.6 Consensus size: 27
33977515 AAGGGTATTT
*
33977525 TAGTAATTTTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* *
33977552 CAGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* *
33977579 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* *
33977606 -CGATAATTCTGTAAATCGAGGGTAAAA
1 TAG-TAATTCTGTAAATCAAGGGTAAAA
* * *
33977633 -CGATAATTATGTAAATCGAGGGTAAAA
1 TAG-TAATTCTGTAAATCAAGGGTAAAA
* **
33977660 -CGATAATTAC-GTAAATCGGGGGTAAAA
1 TAG-TAATT-CTGTAAATCAAGGGTAAAA
* * ***
33977687 -CGATAATTATGTAAATTGGGGGTAAAA
1 TAG-TAATTCTGTAAATCAAGGGTAAAA
** *
33977714 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
*
33977741 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-AAGGGTAAAA
* *
33977768 CAGTAATTCTGTAAATC-GGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
** * ** *
33977794 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
** *
33977821 CGGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
33977848 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* * *
33977875 CAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-AAGGGTAAAA
** *
33977902 CGGTAATTCTGTAAATCTAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
*
33977929 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-AAGGGTAAAA
**
33977956 CGGTAATTCTGTAAATC
1 TAGTAATTCTGTAAATC
33977973 GAGAGTACTT
Statistics
Matches: 367, Mismatches: 43, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
26 25 0.07
27 338 0.92
28 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCAAGGGTAAAA
Found at i:33977990 original size:54 final size:54
Alignment explanation
Indices: 33977527--33977975 Score: 548
Period size: 54 Copynumber: 8.3 Consensus size: 54
33977517 GGGTATTTTA
* * * * * *
33977527 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
33977581 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
33977635 ATAATTATGTAAATCGAGGGTAAAACGATAATTAC-GTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATT-CTGTAAATCGAGGGTAAAACG
* * * * **
33977689 ATAATTATGTAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
33977743 GTAATTCTGTAAA-CTGAGGGTAAAACAGTAATTCTGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * * **
33977796 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* **
33977850 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
* **
33977904 GTAATTCTGTAAATCTAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
33977958 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
33977976 AGTACTTTGG
Statistics
Matches: 344, Mismatches: 45, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
53 45 0.13
54 298 0.87
55 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:33977990 original size:81 final size:81
Alignment explanation
Indices: 33977525--33977975 Score: 556
Period size: 81 Copynumber: 5.6 Consensus size: 81
33977515 AAGGGTATTT
* * * * * *
33977525 TAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTG
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
33977590 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * *
33977606 -CGATAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAACGATAATTAC
1 TAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-C
*
33977670 -GTAAATCGGGGGTAAAA
64 TGTAAATCGAGGGTAAAA
* * * * **
33977687 -CGATAATTATGTAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCT
1 TAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCT
33977751 GTAAA-CTGAGGGTAAAA
65 GTAAATC-GAGGGTAAAA
* * ** *
33977768 CAGTAATTCTGTAAATCG-GGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
*
33977832 TAAATCAAGGGTAAAA
66 TAAATCGAGGGTAAAA
* **
33977848 TAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCT
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCT
*
33977912 GTAAATCTAGGGTAAAA
65 GTAAATCGAGGGTAAAA
33977929 TAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAG
1 TAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAG
33977976 AGTACTTTGG
Statistics
Matches: 318, Mismatches: 42, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
80 74 0.23
81 241 0.76
82 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:33979596 original size:43 final size:42
Alignment explanation
Indices: 33979480--33979629 Score: 237
Period size: 42 Copynumber: 3.5 Consensus size: 42
33979470 GATAATGCAT
*
33979480 AGACCATATCTGGGATATGGCATCGATATGAGACTTCATGTA
1 AGACCATATCTGGGATATGGCATCGATATGAGATTTCATGTA
* *
33979522 AGACCATATCTAGGATATGGCATCGATATGAGATTTCGTGTA
1 AGACCATATCTGGGATATGGCATCGATATGAGATTTCATGTA
* * *
33979564 AGACCATAGCTGGGCTATTGGCATCGATATGAGATTACATGTA
1 AGACCATATCTGGGATA-TGGCATCGATATGAGATTTCATGTA
33979607 AGACCATATCTGGGATATGGCAT
1 AGACCATATCTGGGATATGGCAT
33979630 TGGTACGGTA
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
42 59 0.61
43 38 0.39
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
AGACCATATCTGGGATATGGCATCGATATGAGATTTCATGTA
Found at i:33985944 original size:42 final size:42
Alignment explanation
Indices: 33985895--33986048 Score: 191
Period size: 42 Copynumber: 3.6 Consensus size: 42
33985885 TGAGATAATA
* * ** *
33985895 TGTAAGACCATATTTGGGATATTGCATTGATATGAGATTTTG
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCG
* *
33985937 TGTAAGACCATATCTGGGATATGGAATCAATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCG
* * * *
33985979 TGTAAGACCATAGCTGGGTTATTGGCATCAATATGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCAATATGAGATTTCG
*
33986022 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
33986049 TGGTATGGTA
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 60 0.63
43 35 0.37
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCG
Found at i:33987828 original size:93 final size:93
Alignment explanation
Indices: 33987721--33987891 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
33987711 GCCCCTAAGT
* *
33987721 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33987786 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
33987814 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33987879 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33987892 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33987888 original size:46 final size:46
Alignment explanation
Indices: 33987716--33987888 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
33987706 AACCCGCCCC
* * *
33987716 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
33987762 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
33987810 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
33987855 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33987889 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:33988336 original size:30 final size:30
Alignment explanation
Indices: 33988302--33988361 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
33988292 ATTTAATACG
33988302 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
33988332 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
33988362 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:33995335 original size:46 final size:46
Alignment explanation
Indices: 33995268--33995439 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
33995258 AACCCGCCCC
*
33995268 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
*
33995314 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACATCCA
* * * * *
33995362 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
*
33995407 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
33995440 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 59 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
Found at i:33995380 original size:93 final size:93
Alignment explanation
Indices: 33995273--33995443 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
33995263 GCCCCTAAGT
* *
33995273 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
33995338 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
33995366 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
33995431 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33995444 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33995899 original size:30 final size:30
Alignment explanation
Indices: 33995865--33995924 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
33995855 ATTTAATACG
33995865 AACTTTGGAAAAACTACACTTTTGCCCCTA
1 AACTTTGGAAAAACTACACTTTTGCCCCTA
* * * *
33995895 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAACTACACTTTTGCCCCTA
33995925 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (30 bp):
AACTTTGGAAAAACTACACTTTTGCCCCTA
Found at i:33998208 original size:2 final size:2
Alignment explanation
Indices: 33998203--33998238 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
33998193 TGACCCTTTT
33998203 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33998239 CTTAAGCAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34014580 original size:28 final size:28
Alignment explanation
Indices: 34014519--34014616 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
34014509 TCACAAATTG
** * *
34014519 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
34014548 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
34014576 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
34014604 GCACTAAGTGTGC
1 GCACTAAGTGTGC
34014617 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:34021802 original size:28 final size:28
Alignment explanation
Indices: 34021741--34021838 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
34021731 TCACAAATTG
** * *
34021741 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
34021770 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
34021798 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
34021826 GCACTAAGTGTGC
1 GCACTAAGTGTGC
34021839 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:34037556 original size:5 final size:5
Alignment explanation
Indices: 34037548--34037586 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
34037538 TTGTTTTCTT
*
34037548 TTTCA TTTCA TTTTA TTTCA TTTCA TTTTCA TTTCA TTT
1 TTTCA TTTCA TTTCA TTTCA TTTCA -TTTCA TTTCA TTT
34037587 TATGTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.67
Consensus pattern (5 bp):
TTTCA
Found at i:34037571 original size:26 final size:26
Alignment explanation
Indices: 34037532--34037604 Score: 92
Period size: 26 Copynumber: 2.7 Consensus size: 26
34037522 GATCACTGAT
**
34037532 TTTTATTTGTTTTCTTTTTCATTTCA
1 TTTTATTTCATTTCTTTTTCATTTCA
*
34037558 TTTTATTTCATTTCATTTTCATTTCA
1 TTTTATTTCATTTCTTTTTCATTTCA
*
34037584 TTTTATGTTTATTTCTCTTTT
1 TTTTAT-TTCATTTCT-TTTT
34037605 TAGTTGTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 29 0.73
27 7 0.17
28 4 0.10
ACGTcount: A:0.14, C:0.12, G:0.03, T:0.71
Consensus pattern (26 bp):
TTTTATTTCATTTCTTTTTCATTTCA
Found at i:34037659 original size:23 final size:22
Alignment explanation
Indices: 34037613--34037659 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
34037603 TTTAGTTGTT
* * *
34037613 TTGTTTTGTTTTTATTTTTTTC
1 TTGTTTTGTTTTAATTATTATC
34037635 TTGTATTTGTTTTAATTATTATC
1 TTGT-TTTGTTTTAATTATTATC
34037658 TT
1 TT
34037660 TTGAATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.13, C:0.04, G:0.09, T:0.74
Consensus pattern (22 bp):
TTGTTTTGTTTTAATTATTATC
Found at i:34042643 original size:29 final size:29
Alignment explanation
Indices: 34042613--34042743 Score: 142
Period size: 29 Copynumber: 4.6 Consensus size: 29
34042603 ATAAGGTGAT
* *
34042613 TTGGGCCTAACGGGCCATATAAATATGAT
1 TTGGGCCTAATGGGCCATATAAATATGAA
* *
34042642 TTGGGCTTAATGGGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATAAATATGAA
* * *
34042671 TTGGGCCTAATGGGCCATATGAATGTAAA
1 TTGGGCCTAATGGGCCATATAAATATGAA
* *
34042700 TTGGGCCTGATGGGCCACAT-AA-ATGAGA
1 TTGGGCCTAATGGGCCATATAAATATGA-A
34042728 TTGGGCC-AAGTGGGCC
1 TTGGGCCTAA-TGGGCC
34042744 TGTGACAACC
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
27 3 0.03
28 16 0.18
29 69 0.78
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATAAATATGAA
Found at i:34044451 original size:28 final size:28
Alignment explanation
Indices: 34044386--34044484 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
34044376 CATGAGATTG
* * *
34044386 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
34044415 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
34044443 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
*
34044471 GCACTAAATGTGCG
1 GCACTAAGTGTGCG
34044485 GGCTTATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 1 0.02
28 44 0.71
29 17 0.27
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:34053430 original size:28 final size:29
Alignment explanation
Indices: 34053398--34053458 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
34053388 GTGAGCATTA
* *
34053398 ATAT-AAGGTGATTTGGGCCTAATGGGAC
1 ATATAAAGGTGATTAGGGCCTAATAGGAC
*
34053426 ATATAAAGGTGATTAGGGCCTAATAGGCC
1 ATATAAAGGTGATTAGGGCCTAATAGGAC
34053455 ATAT
1 ATAT
34053459 GAATATAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (29 bp):
ATATAAAGGTGATTAGGGCCTAATAGGAC
Found at i:34058027 original size:29 final size:29
Alignment explanation
Indices: 34057995--34058058 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
34057985 AAGGTGATTT
*
34057995 GGGCCTAATCGGCCATATGAATATGAATC
1 GGGCCTAATAGGCCATATGAATATGAATC
* * * *
34058024 GGGCCTTATAGGCGATATGAATGTGAATT
1 GGGCCTAATAGGCCATATGAATATGAATC
34058053 GGGCCT
1 GGGCCT
34058059 GATGGTCGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
GGGCCTAATAGGCCATATGAATATGAATC
Found at i:34066428 original size:40 final size:40
Alignment explanation
Indices: 34066373--34066536 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
34066363 TGAATGATAC
* * * *
34066373 CCGGGCAAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
34066413 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
34066453 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
34066493 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
34066533 CCGG
1 CCGG
34066537 TTAAATCCCG
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 96 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:34066506 original size:80 final size:79
Alignment explanation
Indices: 34066383--34066550 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
34066373 CCGGGCAAAG
* * * * *
34066383 TCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG
1 TCCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGG
34066447 TTATATCCGGGTTAAGA
65 TTATATCC-GGTTAA-A
* * * **
34066464 -CCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGT
1 TCCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGT
34066528 TATATCCGGTTAAA
66 TATATCCGGTTAAA
34066542 TCCCGAAGG
1 TCCCGAAGG
34066551 TACGTGACTC
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 14 0.19
80 57 0.76
81 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGT
TATATCCGGTTAAA
Found at i:34073221 original size:12 final size:12
Alignment explanation
Indices: 34073204--34073230 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
34073194 GTTTATAGGA
34073204 TTTTGCTAGTAC
1 TTTTGCTAGTAC
34073216 TTTTGCTAGTAC
1 TTTTGCTAGTAC
34073228 TTT
1 TTT
34073231 GGCAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (12 bp):
TTTTGCTAGTAC
Found at i:34073691 original size:29 final size:27
Alignment explanation
Indices: 34073658--34073721 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
34073648 TAATTAATAG
34073658 CTTTTAACAT-AATTATCATTAGTATTTAT
1 CTTTTAA-ATAAATT-T-ATTAGTATTTAT
*
34073687 CTTTTATAATAAATTTATTTGTATTTAT
1 CTTTTA-AATAAATTTATTAGTATTTAT
34073715 -TTTTAAA
1 CTTTTAAA
34073722 CTCTTCAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
26 2 0.06
27 5 0.16
28 11 0.34
29 9 0.28
30 5 0.16
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (27 bp):
CTTTTAAATAAATTTATTAGTATTTAT
Found at i:34079430 original size:31 final size:32
Alignment explanation
Indices: 34079393--34079707 Score: 366
Period size: 31 Copynumber: 10.2 Consensus size: 32
34079383 TGTGTACAAT
*
34079393 GTGAAAAGTGGTAGCTTCGA-CTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGAGCTACCTGATTA
34079424 GTGAAAAGTGGTAGCTTCG-GCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGAGCTACCTGATTA
* * *
34079455 GTGGAAAGTAGTAGCTTC-AGCTACTTGATTA
1 GTGAAAAGTGGTAGCTTCGAGCTACCTGATTA
* *
34079486 GTGAAAAGCGGTAGCTTC-AGCTACCTCG-TCA
1 GTGAAAAGTGGTAGCTTCGAGCTACCT-GATTA
*
34079517 GTGAAAAGTAGTAGCTTCGA-CTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGAGCTACCTGATTA
34079548 GTGAAAAGTGGTAGCTTCG-GCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGAGCTACCTGATTA
* * *
34079579 GTGGAAAGTAGTAGCTTC-AGCTACTTGATTA
1 GTGAAAAGTGGTAGCTTCGAGCTACCTGATTA
* *
34079610 GTGAAAAGCGGTAGCTTC-AGCTACCTCG-TCA
1 GTGAAAAGTGGTAGCTTCGAGCTACCT-GATTA
* *
34079641 GTGAAAAGTAGTAGCTTCGA-CTACCTGATTT
1 GTGAAAAGTGGTAGCTTCGAGCTACCTGATTA
* * * *
34079672 GTGAAAAGTGGTAAC-TCCAGCTACATGATCA
1 GTGAAAAGTGGTAGCTTCGAGCTACCTGATTA
34079703 GTGAA
1 GTGAA
34079708 TAGGGATAGC
Statistics
Matches: 242, Mismatches: 31, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
30 5 0.02
31 233 0.96
32 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (32 bp):
GTGAAAAGTGGTAGCTTCGAGCTACCTGATTA
Found at i:34079704 original size:62 final size:62
Alignment explanation
Indices: 34079393--34079707 Score: 422
Period size: 62 Copynumber: 5.1 Consensus size: 62
34079383 TGTGTACAAT
* * * *
34079393 GTGAAAAGTGGTAGCTTCGACTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTAGCTTCAGCTACCTGATCA
* * *
34079455 GTGGAAAGTAGTAGCTTC-AGCTACTTGATTAGTGAAAAGCGGTAGCTTCAGCTACCTCG-TCA
1 GTGAAAAGTAGTAGCTTCGA-CTACCTGATTAGTGAAAAGTGGTAGCTTCAGCTACCT-GATCA
* *
34079517 GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTAGCTTCAGCTACCTGATCA
* * *
34079579 GTGGAAAGTAGTAGCTTC-AGCTACTTGATTAGTGAAAAGCGGTAGCTTCAGCTACCTCG-TCA
1 GTGAAAAGTAGTAGCTTCGA-CTACCTGATTAGTGAAAAGTGGTAGCTTCAGCTACCT-GATCA
* * * *
34079641 GTGAAAAGTAGTAGCTTCGACTACCTGATTTGTGAAAAGTGGTAACTCCAGCTACATGATCA
1 GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTAGCTTCAGCTACCTGATCA
34079703 GTGAA
1 GTGAA
34079708 TAGGGATAGC
Statistics
Matches: 221, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
61 4 0.02
62 213 0.96
63 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (62 bp):
GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTAGCTTCAGCTACCTGATCA
Found at i:34079719 original size:124 final size:124
Alignment explanation
Indices: 34079393--34079684 Score: 557
Period size: 124 Copynumber: 2.4 Consensus size: 124
34079383 TGTGTACAAT
* *
34079393 GTGAAAAGTGGTAGCTTCGACTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTG
1 GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTG
34079458 GAAAGTAGTAGCTTCAGCTACTTGATTAGTGAAAAGCGGTAGCTTCAGCTACCTCGTCA
66 GAAAGTAGTAGCTTCAGCTACTTGATTAGTGAAAAGCGGTAGCTTCAGCTACCTCGTCA
34079517 GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTG
1 GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTG
34079582 GAAAGTAGTAGCTTCAGCTACTTGATTAGTGAAAAGCGGTAGCTTCAGCTACCTCGTCA
66 GAAAGTAGTAGCTTCAGCTACTTGATTAGTGAAAAGCGGTAGCTTCAGCTACCTCGTCA
*
34079641 GTGAAAAGTAGTAGCTTCGACTACCTGATTTGTGAAAAGTGGTA
1 GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTA
34079685 ACTCCAGCTA
Statistics
Matches: 165, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 165 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (124 bp):
GTGAAAAGTAGTAGCTTCGACTACCTGATTAGTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTG
GAAAGTAGTAGCTTCAGCTACTTGATTAGTGAAAAGCGGTAGCTTCAGCTACCTCGTCA
Found at i:34083667 original size:46 final size:46
Alignment explanation
Indices: 34083614--34083789 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 46
34083604 TATTTGGGCA
34083614 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
34083660 TCCGAACTCGTTGAGTTGAGTCC-ATGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGA-GTTCACTTATG-GATGTGAA-T--G
* * * * *
34083705 CATCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATAGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
34083753 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34083790 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
45 2 0.02
46 60 0.56
47 24 0.22
48 2 0.02
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:34089261 original size:46 final size:45
Alignment explanation
Indices: 34089117--34089278 Score: 149
Period size: 46 Copynumber: 3.6 Consensus size: 45
34089107 GGCATCCGAA
* *
34089117 CTCGTTGAGTT-AGTCCG-GTTCACTTATGGATGCGAATG-TCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAACGCT-CGAG
* ** * *
34089161 CTCGTTGAG-TGAGTCCGAGTT--C-GAGAGATGTAATAGGCATCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTAG-GATGCGA-ACGC-TCGAG
34089205 CTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCTCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAACGCTCGAG
*
34089251 CTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTA
34089279 TGGGCGGGTT
Statistics
Matches: 95, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
41 1 0.01
42 6 0.06
43 4 0.04
44 26 0.27
45 16 0.17
46 31 0.33
47 4 0.04
48 6 0.06
49 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAACGCTCGAG
Found at i:34091310 original size:2 final size:2
Alignment explanation
Indices: 34091303--34091329 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
34091293 TAATTGATTT
34091303 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
34091330 GAGAAGCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34091494 original size:15 final size:15
Alignment explanation
Indices: 34091474--34091515 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
34091464 GCTGTAAATG
34091474 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
34091489 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
34091504 GGATTTCCTTAT
1 GGATTTCCTTAT
34091516 TCTGGGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:34094101 original size:31 final size:31
Alignment explanation
Indices: 34094063--34094266 Score: 269
Period size: 31 Copynumber: 6.7 Consensus size: 31
34094053 GTGTACAATA
34094063 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
34094094 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
34094125 -CAATAA---GTAGCTTCGGCTACCTGATTAG
1 TGAA-AAGTGGTAGCTTCGGCTACCTGATCAG
*
34094153 TGAAAAGTGGTAGCTTCTGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
34094184 TGAAAAGTAGTAGCTTCGGCTACCTGA-CTAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATC-AG
* *
34094215 TGAAAAGTGGTAGC-TCAGCTATCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
34094245 TGAATAG-GGATAGCTTCGGCTA
1 TGAAAAGTGG-TAGCTTCGGCTA
34094267 TGGAATGTGC
Statistics
Matches: 152, Mismatches: 12, Indels: 18
0.84 0.07 0.10
Matches are distributed among these distances:
28 23 0.15
29 4 0.03
30 25 0.16
31 100 0.66
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Found at i:34094144 original size:59 final size:61
Alignment explanation
Indices: 34094072--34094266 Score: 254
Period size: 59 Copynumber: 3.2 Consensus size: 61
34094062 ATGAAAAGTG
* *
34094072 GTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATCAG-CAATA-A
1 GTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTCAAAAGA
* * *
34094131 GTAGCTTCGGCTACCTGATTAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAGTGAAAAGTA
1 GTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTCAAAAG-A
* * * *
34094193 GTAGCTTCGGCTACCTGA-CTAGTGAAAAGTGGTAGC-TCAGCTATCTGATCAGTGAATAGG
1 GTAGCTTCGGCTACCTGATC-AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTCAAAAGA
34094253 GATAGCTTCGGCTA
1 G-TAGCTTCGGCTA
34094267 TGGAATGTGC
Statistics
Matches: 122, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
59 51 0.42
60 4 0.03
61 32 0.26
62 35 0.29
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (61 bp):
GTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTCAAAAGA
Found at i:34094283 original size:29 final size:29
Alignment explanation
Indices: 34094244--34094337 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
34094234 TATCTGATCA
* **
34094244 GTGAATAGGGATAGCTTCGGCTATGGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
* * *
34094273 GTGCAAAGGGATAACTTCAGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
* **
34094302 GTGAAAAGGGATAGCTTTGGCTATCGTAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
34094331 GTGAAAA
1 GTGAAAA
34094338 TGTTAGGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGGCTATCAAAT
Found at i:34094369 original size:33 final size:33
Alignment explanation
Indices: 34094342--34094527 Score: 221
Period size: 33 Copynumber: 5.7 Consensus size: 33
34094332 TGAAAATGTT
**
34094342 AGGTATACTTTGTGTATACCACATGAAAAGGTT
1 AGGTATACTTTGTGTATACCACATGAAAAGGAA
* * * * *
34094375 ATGTACACATTGTGTGTA-CACTTGAAAAGGAA
1 AGGTATACTTTGTGTATACCACATGAAAAGGAA
* * *
34094407 AGGTATACTTTGTATATACCATATAAAAAGGAA
1 AGGTATACTTTGTGTATACCACATGAAAAGGAA
* *
34094440 ATGTATACTTTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCACATGAAAAGGAA
* * *
34094473 GGGTATACTCTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCACATGAAAAGGAA
*
34094506 AGGTATACTTTGTGTGTACCAC
1 AGGTATACTTTGTGTATACCAC
34094528 TCAGAAAGAA
Statistics
Matches: 127, Mismatches: 25, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
32 24 0.19
33 103 0.81
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (33 bp):
AGGTATACTTTGTGTATACCACATGAAAAGGAA
Found at i:34094492 original size:66 final size:66
Alignment explanation
Indices: 34094342--34094528 Score: 252
Period size: 66 Copynumber: 2.8 Consensus size: 66
34094332 TGAAAATGTT
* ** * *
34094342 AGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACATTGTGTGTA-CACTTGAAAAGGA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAAATGTATACTTTGTGTGTACCACTTGAAAAGGA
34094406 A
66 A
* * *
34094407 AGGTATACTTTGTATATACCATATAAAAAGGAAATGTATACTTTGTGTATACCA-TATGAAAAGG
1 AGGTATACTTTGTGTATACCATATGAAAAGGAAATGTATACTTTGTGTGTACCACT-TGAAAAGG
34094471 AA
65 AA
* * *
34094473 GGGTATACTCTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCACT
1 AGGTATACTTTGTGTATACCATATGAAAAGGAAATGTATACTTTGTGTGTACCACT
34094529 CAGAAAGAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
65 44 0.42
66 60 0.57
67 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (66 bp):
AGGTATACTTTGTGTATACCATATGAAAAGGAAATGTATACTTTGTGTGTACCACTTGAAAAGGA
A
Found at i:34115474 original size:29 final size:29
Alignment explanation
Indices: 34115441--34115514 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
34115431 CCTTCGAGCT
34115441 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
34115470 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
34115499 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
34115515 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:34115475 original size:58 final size:58
Alignment explanation
Indices: 34115382--34115514 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
34115372 ATACTCGATT
* * * * *
34115382 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
34115440 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
34115498 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
34115515 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:34123373 original size:29 final size:29
Alignment explanation
Indices: 34123341--34123413 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
34123331 CTTCGAGCTC
*
34123341 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
34123370 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
34123399 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
34123414 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:34132842 original size:40 final size:40
Alignment explanation
Indices: 34132757--34132907 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
34132747 AATTGAATGA
* * *
34132757 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
34132797 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
34132838 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
34132877 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
34132908 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:34132921 original size:40 final size:40
Alignment explanation
Indices: 34132794--34132923 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
34132784 ATGCTGGAAA
* * * *
34132794 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
34132834 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
34132874 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
34132914 TTATATCCGG
1 TTATATCCGG
34132924 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:34138067 original size:27 final size:27
Alignment explanation
Indices: 34137902--34138070 Score: 169
Period size: 27 Copynumber: 6.3 Consensus size: 27
34137892 TAAGTTGTAG
* * * * *
34137902 AATTACCAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAA
* * * *
34137929 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAA
* * * *
34137956 AATTACCAAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAA
34137983 AATTACCGAAATACCCTTGTAGGGTAGA
1 AATTACCGAAATACCCTTGTAGGGTA-A
*
34138011 AA-TACCGAAATACCTTTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAA
* * *
34138037 AATTACAGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAA
34138064 AATTACC
1 AATTACC
34138071 ATTTTGCCCC
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.02
27 122 0.96
28 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAA
Found at i:34138068 original size:81 final size:81
Alignment explanation
Indices: 34137902--34138071 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
34137892 TAAGTTGTAG
* *
34137902 AATTACCAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTACCAAAA
1 AATTACCAAAATACCCCTATAAGGTAGAAATACCAAAATACCCCTATAGGGTAAAATTACCAAAA
*
34137967 TACCCCTGTAGGATAG
66 TACCCCTGTAGGATAA
* * * * * ** * *
34137983 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCTTTGTAGGGTAAAATTA-CAGAG
1 AATTACCAAAATACCCCTATAAGGTAGAAATACCAAAATACCCCTATAGGGTAAAATTACCA-AA
* * *
34138047 ATACCCTTGTGGGGTAA
65 ATACCCCTGTAGGATAA
34138064 AATTACCA
1 AATTACCA
34138072 TTTTGCCCCT
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 2 0.03
81 70 0.97
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.24
Consensus pattern (81 bp):
AATTACCAAAATACCCCTATAAGGTAGAAATACCAAAATACCCCTATAGGGTAAAATTACCAAAA
TACCCCTGTAGGATAA
Found at i:34139980 original size:40 final size:40
Alignment explanation
Indices: 34139892--34139981 Score: 121
Period size: 40 Copynumber: 2.2 Consensus size: 40
34139882 ATGCTGGAAA
*
34139892 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGG
* *
34139932 CTACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GTGG
34139972 TTATATCCGG
1 TTATATCCGG
34139982 TTGTATTCCG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
39 4 0.09
40 39 0.91
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGG
Found at i:34141954 original size:2 final size:2
Alignment explanation
Indices: 34141947--34141991 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
34141937 GGCTTCGCCC
34141947 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
34141989 TA T
1 TA T
34141992 CTGTTCTGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:34142028 original size:27 final size:26
Alignment explanation
Indices: 34141988--34142047 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
34141978 ATATATATAT
* *
34141988 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTATTCTGGTGACCTAGCCACA
* * *
34142014 ATATCTATATCTGGTGACTTCGTCACA
1 ATATCTAT-TCTGGTGACCTAGCCACA
34142041 ATATCTA
1 ATATCTA
34142048 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (26 bp):
ATATCTATTCTGGTGACCTAGCCACA
Found at i:34147260 original size:23 final size:23
Alignment explanation
Indices: 34147234--34147295 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
34147224 CAACTGCCTA
*
34147234 TCTCGAAAAG-TCTGCAACACAAG
1 TCTC-AAAAGTTCAGCAACACAAG
*
34147257 TCTCAAATGTTCAGCAACACAAG
1 TCTCAAAAGTTCAGCAACACAAG
*
34147280 TCTCAAATGTTCAGCA
1 TCTCAAAAGTTCAGCA
34147296 TGTTCAGCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.11
23 32 0.89
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.23
Consensus pattern (23 bp):
TCTCAAAAGTTCAGCAACACAAG
Found at i:34154458 original size:30 final size:30
Alignment explanation
Indices: 34154424--34154484 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
34154414 TCCTTAATTC
34154424 AAAATTTTGAAAAATTACAATTTTGCCCCT
1 AAAATTTTGAAAAATTACAATTTTGCCCCT
* * * *
34154454 AAAATTTTGCATATTTACACTTTTGCCCCT
1 AAAATTTTGAAAAATTACAATTTTGCCCCT
34154484 A
1 A
34154485 GGCTTGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (30 bp):
AAAATTTTGAAAAATTACAATTTTGCCCCT
Found at i:34184144 original size:46 final size:44
Alignment explanation
Indices: 34184088--34184202 Score: 124
Period size: 46 Copynumber: 2.5 Consensus size: 44
34184078 GAGCTAGTAA
* *
34184088 AAGACATGTCTAGGACATGCATTGACCT-CGAGATGTAAGCCAGTGT
1 AAGACATGTCTGGGACATGCA-TCACCTACGAGATGT--GCCAGTGT
* * * *
34184134 AAGACGTGTCTGGGCCATGCATCAGCTACGAGATGTGTCAGTGT
1 AAGACATGTCTGGGACATGCATCACCTACGAGATGTGCCAGTGT
34184178 AAGACCATGTCTGGGACATGGCATC
1 AAGA-CATGTCTGGGACAT-GCATC
34184203 GGCACGAAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
44 11 0.19
45 16 0.28
46 31 0.53
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (44 bp):
AAGACATGTCTGGGACATGCATCACCTACGAGATGTGCCAGTGT
Found at i:34184281 original size:97 final size:94
Alignment explanation
Indices: 34184170--34184345 Score: 255
Period size: 94 Copynumber: 1.8 Consensus size: 94
34184160 TACGAGATGT
* *
34184170 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAGGTGTGA-GAGCCAGTGTAAGACC
1 GTCAGTGAAAGACCATGTCTGGGACATGGCATC-G-AC-AAGGTG-GATAAGCCAGTGTAAGACC
34184234 AAGTCTGGGACATGGCATCGGTCAATTTCGATA
62 AAGTCTGGGACATGGCATCGGTCAATTTCGATA
** * *
34184267 GTCAGTGAAAGACCATGTCTGGGACATGGCATCGACTTGTTGGATAAGCCAGTGTAAGACCATGT
1 GTCAGTGAAAGACCATGTCTGGGACATGGCATCGACAAGGTGGATAAGCCAGTGTAAGACCAAGT
34184332 CTGGGACATGGCAT
66 CTGGGACATGGCAT
34184346 TGGCATTATG
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
93 2 0.03
94 35 0.49
95 2 0.03
96 1 0.01
97 32 0.44
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (94 bp):
GTCAGTGAAAGACCATGTCTGGGACATGGCATCGACAAGGTGGATAAGCCAGTGTAAGACCAAGT
CTGGGACATGGCATCGGTCAATTTCGATA
Found at i:34184289 original size:47 final size:46
Alignment explanation
Indices: 34184172--34184345 Score: 199
Period size: 47 Copynumber: 3.7 Consensus size: 46
34184162 CGAGATGTGT
* *
34184172 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAGGTGTGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-AC-AA--TTTGATAGC
* * *
34184222 CAGTGTAAGACCAAGTCTGGGACATGGCATCGGTCAATTTCGATAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGACAATTT-GATAGC
* *
34184269 CAGTGAAAGACCATGTCTGGGACATGGCATC-GAC-TTGTTGGATAAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGACAAT-TT-GAT-AGC
34184316 CAGTGTAAGACCATGTCTGGGACATGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCAT
34184346 TGGCATTATG
Statistics
Matches: 109, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
45 1 0.01
46 9 0.08
47 64 0.59
48 2 0.02
49 1 0.01
50 32 0.29
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGACAATTTGATAGC
Found at i:34201057 original size:42 final size:42
Alignment explanation
Indices: 34200998--34201101 Score: 181
Period size: 42 Copynumber: 2.5 Consensus size: 42
34200988 AGGGTTACTA
*
34200998 AGACTTTGTGTAAGACCATATCTAGGATATGGCATCAATATG
1 AGACTTCGTGTAAGACCATATCTAGGATATGGCATCAATATG
*
34201040 AGACTTCGTGTAAGACCATATCTAGGATATGGCATTAATATG
1 AGACTTCGTGTAAGACCATATCTAGGATATGGCATCAATATG
*
34201082 AGACTTCGTGTAAAACCATA
1 AGACTTCGTGTAAGACCATA
34201102 GTTGGGCTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (42 bp):
AGACTTCGTGTAAGACCATATCTAGGATATGGCATCAATATG
Found at i:34209472 original size:40 final size:39
Alignment explanation
Indices: 34209428--34209612 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
34209418 GCTACTCGTT
* * *
34209428 CAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
*
34209468 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* *
34209508 CAAATGCCTTC-GGATCTTAGTCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCG-GTTTAGTAACTCGCA
* * *
34209548 CAAATGCCTTC-GGATCTTAGTCCGAATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCG-GTTTAGTAAC-TCGCA
*
34209589 CAGA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
34209613 ATATCATTCG
Statistics
Matches: 129, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:34209607 original size:80 final size:80
Alignment explanation
Indices: 34209428--34209611 Score: 216
Period size: 80 Copynumber: 2.3 Consensus size: 80
34209418 GCTACTCGTT
* * * * *
34209428 CAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGA
*
34209493 ATTTAGTAACTCGCA
66 ATTTAGTAACTAGCA
*
34209508 CAAATGCCTTC-GGATCTTAGTCCGAATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-
1 CAAATGCCTTCGGGA-CTTAGCCCG-ATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-TC
34209569 CCGAATTTAGTAACTTAGCA
62 CCGAATTTAGTAAC-TAGCA
*
34209589 CAGA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
34209612 GATATCATTC
Statistics
Matches: 89, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
79 6 0.07
80 70 0.79
81 13 0.15
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGA
ATTTAGTAACTAGCA
Found at i:34214357 original size:29 final size:29
Alignment explanation
Indices: 34214295--34214397 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
34214285 GTGACGAGAT
* * *
34214295 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
34214324 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
34214353 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
34214382 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
34214398 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:34220598 original size:31 final size:31
Alignment explanation
Indices: 34220560--34220618 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
34220550 CAACTGAGCG
34220560 AATCATACGTGTAATCTCGACATGTATATCA
1 AATCATACGTGTAATCTCGACATGTATATCA
34220591 AATCATACGTGTAATCTCGACATGTATA
1 AATCATACGTGTAATCTCGACATGTATA
34220619 ATCGAAGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.32
Consensus pattern (31 bp):
AATCATACGTGTAATCTCGACATGTATATCA
Found at i:34223342 original size:40 final size:40
Alignment explanation
Indices: 34223260--34223445 Score: 197
Period size: 40 Copynumber: 4.7 Consensus size: 40
34223250 GCTACTCGTT
* * * *
34223260 CAAATACCTTCGGGACATAGCCC-G-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTATCCCGGATT-TAGTAACTCGCA
*
34223299 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
34223339 CAAATGCCTTC-GGATCTTAGT-CCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTA-TCCCGGATTTAGTAACTCGCA
*
34223379 CAAATGCCTTC-GGATCTTAGT-CCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTA-TCCCGGATTTAGTAAC-TCGCA
* *
34223420 CAGA-GCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACTTATCCCGGAT
34223446 ATCATTCGAA
Statistics
Matches: 131, Mismatches: 9, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
39 23 0.18
40 95 0.73
41 13 0.10
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
Found at i:34223385 original size:80 final size:80
Alignment explanation
Indices: 34223266--34223445 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 80
34223256 CGTTCAAATA
* *
34223266 CCTTCGGGACATAGCCC-G-TTATAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
34223327 TAGTAACTT-GCACAAATG
63 TAGTAACTTAGCACAAA-G
*
34223345 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTA
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTA
*
34223409 GTAACTTAGCACAGAG
65 GTAACTTAGCACAAAG
34223425 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
34223446 ATCATTCGAA
Statistics
Matches: 89, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 3 0.03
79 14 0.16
80 60 0.67
81 12 0.13
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAG
TAACTTAGCACAAAG
Found at i:34225982 original size:24 final size:24
Alignment explanation
Indices: 34225955--34226003 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
34225945 CTTGTCTAAA
34225955 ACATATTTGTAAGTAACAATATCT
1 ACATATTTGTAAGTAACAATATCT
34225979 ACATATTTGTAAGTAACAATATCT
1 ACATATTTGTAAGTAACAATATCT
34226003 A
1 A
34226004 TGTAAAGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (24 bp):
ACATATTTGTAAGTAACAATATCT
Found at i:34234805 original size:22 final size:22
Alignment explanation
Indices: 34234765--34234806 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
34234755 AGGACCAATT
*
34234765 TGTAAAAGGGTTATAAAATGTG
1 TGTAAAAGGGTGATAAAATGTG
* *
34234787 TGTAAAAGTGTGATTAAATG
1 TGTAAAAGGGTGATAAAATG
34234807 AACATGTGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.33
Consensus pattern (22 bp):
TGTAAAAGGGTGATAAAATGTG
Found at i:34235321 original size:42 final size:42
Alignment explanation
Indices: 34235261--34235369 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 42
34235251 AGGGTTACTA
* * *
34235261 AGACTTTGTGTAAGACCATATTTGGGATATGGCATTAATATG
1 AGACTTCGTGTAAAACCATATTTGGGATATGGCATCAATATG
* *
34235303 AGACTTCG-GATAAAACCATTTTTGGGATATGGCATCGATATG
1 AGACTTCGTG-TAAAACCATATTTGGGATATGGCATCAATATG
* *
34235345 AGACTTCGTGTAAGACCATAGTTGG
1 AGACTTCGTGTAAAACCATATTTGG
34235370 CCTATTGTCA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
41 1 0.02
42 55 0.96
43 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (42 bp):
AGACTTCGTGTAAAACCATATTTGGGATATGGCATCAATATG
Found at i:34237727 original size:21 final size:21
Alignment explanation
Indices: 34237701--34237740 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
34237691 GACGCAACTT
*
34237701 GACTCTAAATTACAGCATCCC
1 GACTCTAAATTACAACATCCC
34237722 GACTCTAAATTACAACATC
1 GACTCTAAATTACAACATC
34237741 GTTTTTAGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.30, G:0.07, T:0.25
Consensus pattern (21 bp):
GACTCTAAATTACAACATCCC
Found at i:34243642 original size:21 final size:21
Alignment explanation
Indices: 34243618--34243688 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
34243608 GTGGGGCTCT
34243618 ACATGCCCATGTGAAGGCCAC
1 ACATGCCCATGTGAAGGCCAC
* *
34243639 ACATGCCTATCTGAAGGCCAC
1 ACATGCCCATGTGAAGGCCAC
* * * **
34243660 ACACGACCATGTGGAGGGGAC
1 ACATGCCCATGTGAAGGCCAC
34243681 ACATGCCC
1 ACATGCCC
34243689 GTGTATGCAG
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.28, C:0.32, G:0.25, T:0.14
Consensus pattern (21 bp):
ACATGCCCATGTGAAGGCCAC
Found at i:34243741 original size:25 final size:25
Alignment explanation
Indices: 34243703--34243752 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
34243693 ATGCAGCCCG
*
34243703 TGTAACTCGCTGTCCAAAAATGCCA
1 TGTAACTCGATGTCCAAAAATGCCA
*
34243728 TGTAACTTGATGTCCAAAAATGCCA
1 TGTAACTCGATGTCCAAAAATGCCA
34243753 AAAATAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (25 bp):
TGTAACTCGATGTCCAAAAATGCCA
Found at i:34245575 original size:48 final size:48
Alignment explanation
Indices: 34245462--34245611 Score: 174
Period size: 48 Copynumber: 3.1 Consensus size: 48
34245452 GCTGGCAATC
* * * *
34245462 GGCATCGATATATGATCCCATGTAATACCATGTTTGGGACATGGAATT
1 GGCATCAATATATGATCCCATGTAAGACCATGTCTGGGACATGGCATT
* ** * *
34245510 AGCATCAACCTACGATCCCATGTAAGACCATGTGTGGGACATGGCATT
1 GGCATCAATATATGATCCCATGTAAGACCATGTCTGGGACATGGCATT
* * * * *
34245558 GGCATCAATATGTGATCCTATGTAAGACCATATCCGGGATATGGCATT
1 GGCATCAATATATGATCCCATGTAAGACCATGTCTGGGACATGGCATT
34245606 GGCATC
1 GGCATC
34245612 CTACCATGTG
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (48 bp):
GGCATCAATATATGATCCCATGTAAGACCATGTCTGGGACATGGCATT
Found at i:34251980 original size:18 final size:17
Alignment explanation
Indices: 34251957--34252003 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
34251947 TTATTTTTCT
34251957 TTCATTAAGTTTTTAAGA
1 TTCATT-AGTTTTTAAGA
*
34251975 TTCATTTGTTTTTAAGA
1 TTCATTAGTTTTTAAGA
*
34251992 TTCATTTGTTTT
1 TTCATTAGTTTT
34252004 CTTTTTAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 22 0.79
18 6 0.21
ACGTcount: A:0.23, C:0.06, G:0.11, T:0.60
Consensus pattern (17 bp):
TTCATTAGTTTTTAAGA
Found at i:34251986 original size:16 final size:17
Alignment explanation
Indices: 34251965--34252003 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
34251955 CTTTCATTAA
34251965 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTT
34251982 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTT
34251999 GTTTT
1 GTTTT
34252004 CTTTTTAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.21, C:0.05, G:0.13, T:0.62
Consensus pattern (17 bp):
GTTTTTAAGATTCATTT
Found at i:34259241 original size:44 final size:44
Alignment explanation
Indices: 34259177--34259390 Score: 235
Period size: 44 Copynumber: 4.9 Consensus size: 44
34259167 TGTACAGTAC
34259177 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
1 TATTC-GGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
** *
34259222 TATTCGGCCTTTGAGCCTAGCAGGCTATAATATCGGTGAGATAT
1 TATTCGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
34259266 TATTCGGTCCTTTGAGCCTAGCAGGCTATAATGCC-GATGAGATAT
1 TATTCGG-CCTTTGAGCCTAGCAGGCTATAATGCCAG-TGAGATAT
* * *
34259311 TATTCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA-ATGA-
1 TATTC-GGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGAT-AT
* * * *
34259353 -ATTCGGCTTTTTAAACCTAGCAGGCT-GAATGCCAGTGA
1 TATTCGGC-CTTTGAGCCTAGCAGGCTATAATGCCAGTGA
34259391 TTTGATAAAA
Statistics
Matches: 148, Mismatches: 13, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
40 3 0.02
41 4 0.03
42 24 0.16
43 10 0.07
44 60 0.41
45 45 0.30
46 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (44 bp):
TATTCGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
Found at i:34259293 original size:45 final size:45
Alignment explanation
Indices: 34259177--34259348 Score: 260
Period size: 44 Copynumber: 3.9 Consensus size: 45
34259167 TGTACAGTAC
*
34259177 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
**
34259222 TATTC-GGCCTTTGAGCCTAGCAGGCTATAATATCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
34259266 TATTCGGTCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
34259311 TATTCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
34259349 ATGAATTCGG
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
43 10 0.09
44 56 0.49
45 49 0.43
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:34263431 original size:21 final size:21
Alignment explanation
Indices: 34263397--34263436 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
34263387 AATGGTCATG
*
34263397 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
**
34263418 GATGATTTGCGAGTCACTT
1 GATGATTTAAGAGTCACTT
34263437 GTGTTTAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:34263980 original size:28 final size:28
Alignment explanation
Indices: 34263940--34264041 Score: 109
Period size: 28 Copynumber: 3.6 Consensus size: 28
34263930 ATTGCATGAC
*
34263940 TATGAATGTGATTGGGCCTGACGGG-TCA
1 TATGAATGTGATTGGGCCCGACGGGCT-A
*
34263968 TATGAGA-GTGATTGGGCCCGATGGGCTA
1 TATGA-ATGTGATTGGGCCCGACGGGCTA
* * *
34263996 TATGAATGTGATTGGGCCCAATGGGCCA
1 TATGAATGTGATTGGGCCCGACGGGCTA
* *
34264024 TATAAATGAGATTGGGCC
1 TATGAATGTGATTGGGCC
34264042 TAAAGGGGTC
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
27 1 0.02
28 62 0.95
29 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCCGACGGGCTA
Found at i:34266310 original size:30 final size:30
Alignment explanation
Indices: 34266274--34266374 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
34266264 GACAAGATTG
* * *
34266274 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
34266304 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
34266332 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
34266361 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
34266375 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 20 0.32
30 19 0.31
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:34266368 original size:29 final size:29
Alignment explanation
Indices: 34266274--34266374 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
34266264 GACAAGATTG
* * * *
34266274 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
*
34266304 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-TTGAAAATATATA
*
34266332 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
34266361 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
34266375 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 22 0.36
30 15 0.25
31 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:34271928 original size:30 final size:30
Alignment explanation
Indices: 34271892--34271992 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
34271882 GACAAGATTG
* * *
34271892 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
34271922 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
34271950 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
34271979 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
34271993 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 20 0.32
30 19 0.31
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:34271986 original size:29 final size:29
Alignment explanation
Indices: 34271892--34271992 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
34271882 GACAAGATTG
* * * *
34271892 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
*
34271922 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-TTGAAAATATATA
*
34271950 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
34271979 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
34271993 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 22 0.36
30 15 0.25
31 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:34276265 original size:32 final size:33
Alignment explanation
Indices: 34276229--34276292 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
34276219 TTCCTTACCT
*
34276229 CATCTTTTAATCACCATTTTA-TTTTATTTTTG
1 CATCTTTTAATCACCATTGTACTTTTATTTTTG
* *
34276261 CATCTTTTAGTCACCATTGTACTTTTTTTTTT
1 CATCTTTTAATCACCATTGTACTTTTATTTTT
34276293 TCTTTTGCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 19 0.68
33 9 0.32
ACGTcount: A:0.19, C:0.17, G:0.05, T:0.59
Consensus pattern (33 bp):
CATCTTTTAATCACCATTGTACTTTTATTTTTG
Found at i:34277541 original size:105 final size:105
Alignment explanation
Indices: 34277351--34277630 Score: 422
Period size: 105 Copynumber: 2.7 Consensus size: 105
34277341 GTAGATGCAC
* ** * *
34277351 TAGTGGCG-TTTTATATAAAACGCCGCAATATATCAGCATTAGCGGCGTTTGTCATAAAACGCTG
1 TAGTGGCGTTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
34277415 CAAAATTGTTGAGCAAAACGGCATCGTTATATAGG-GGCAT
66 CAAAATTGTTGAGCAAAACGGCATCGTTATAT-GGAGGCAT
* * *
34277455 TAGTGGCGTTTTTATGTAAAATGCCGCAATAGATCATAATTAGCGGCGTTTGTCTTAAAAAGCCG
1 TAGTGGCGTTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
*
34277520 CAAAATTGTTGAGGAAAACGGCATCGTTATATGGAGGCAT
66 CAAAATTGTTGAGCAAAACGGCATCGTTATATGGAGGCAT
* *
34277560 TAGTGGCGTTTGTATGTAAAACGCCGCAATATATCATAATTAGCGGCATTTGT-TCTAAAACGCC
1 TAGTGGCGTTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCT-TAAAACGCC
34277624 GCAAAAT
65 GCAAAAT
34277631 GTTATGTTAT
Statistics
Matches: 159, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
104 11 0.07
105 148 0.93
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (105 bp):
TAGTGGCGTTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
CAAAATTGTTGAGCAAAACGGCATCGTTATATGGAGGCAT
Found at i:34282377 original size:14 final size:14
Alignment explanation
Indices: 34282358--34282397 Score: 80
Period size: 14 Copynumber: 2.9 Consensus size: 14
34282348 TTTAACATTT
34282358 TATTTTATTTTAAA
1 TATTTTATTTTAAA
34282372 TATTTTATTTTAAA
1 TATTTTATTTTAAA
34282386 TATTTTATTTTA
1 TATTTTATTTTA
34282398 TTTTAACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTTTATTTTAAA
Found at i:34282378 original size:19 final size:18
Alignment explanation
Indices: 34282346--34282403 Score: 70
Period size: 19 Copynumber: 3.4 Consensus size: 18
34282336 ACGAAAAATA
*
34282346 ATTTTAACATTTTATTTT
1 ATTTTAAAATTTTATTTT
34282364 ATTTT-AAA---TATTTT
1 ATTTTAAAATTTTATTTT
34282378 ATTTTAAATATTTTATTTT
1 ATTTTAAA-ATTTTATTTT
34282397 ATTTTAA
1 ATTTTAA
34282404 CATTACCTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
14 11 0.32
15 2 0.06
16 1 0.03
17 2 0.06
18 5 0.15
19 13 0.38
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTTTAAAATTTTATTTT
Found at i:34282399 original size:127 final size:130
Alignment explanation
Indices: 34282261--34282501 Score: 391
Period size: 127 Copynumber: 1.9 Consensus size: 130
34282251 TTTTGTTCTC
*
34282261 TTTTATTTTATTTTTAA-ATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAAT-TT
1 TTTTATTTTA-TTTTAACATTACCTAATTAAATTAAATTATATTTAAAATTTTATTTTAAATATT
*
34282324 T-TTT-TTTGAATCACGAAAAATAATTTTAACATTTTATTTTATTTTAAATATTTTATTTTAAAT
65 TATTTATTTGAATCACGAAAAATAATTTCAACATTTTATTTTATTTTAAATATTTTATTTTAAAT
34282387 A
130 A
*
34282388 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTT
1 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTATATTTAAAATTTTATTTTAAATATTT
*
34282453 CATTTAATTTGAATCACGAAAAATAATTTCAATATTTTATTTTATTTTA
66 -ATTT-ATTTGAATCACGAAAAATAATTTCAACATTTTATTTTATTTTA
34282502 TTTTATCATT
Statistics
Matches: 104, Mismatches: 4, Indels: 7
0.90 0.03 0.06
Matches are distributed among these distances:
126 6 0.06
127 52 0.50
128 3 0.03
130 3 0.03
132 40 0.38
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.55
Consensus pattern (130 bp):
TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTATATTTAAAATTTTATTTTAAATATTT
ATTTATTTGAATCACGAAAAATAATTTCAACATTTTATTTTATTTTAAATATTTTATTTTAAATA
Found at i:34282449 original size:104 final size:98
Alignment explanation
Indices: 34282353--34282664 Score: 337
Period size: 104 Copynumber: 3.1 Consensus size: 98
34282343 ATAATTTTAA
* *
34282353 CATTTTATTTTATTTTAAATATTTTATTTTAAATATTTTATTTTATTTTAACATTACCTAATTAA
1 CATTTTATTTTA-ATAAAATATTTTATTTT-AATATTTTATTTTATTTTAACATTACCTAATTAA
*
34282418 ATTAAATTGTATTTAAAATTTTATTTTAAATATTT
64 ATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * * *
34282453 CATTTAATTTGAATCACGAAAAATAATTTCAATATTT--TATTTTATTTTATTTTATCATTACCT
1 CATTTTATTTTAAT-----AAAAT-ATTT-TAT-TTTAATATTTTATTTTATTTTAACATTACCT
34282516 AATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
58 AATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* ** * * * * *
34282557 CATTTT-TTTGAATCAAGAA-AAATAATTTCAATAATTTATTATATTTTAACATTACTTAATTAA
1 CATTTTATTTTAAT-AA-AATATTTTATTTTAATATTTTATTTTATTTTAACATTACCTAATTAA
34282620 ATTAAATTGTATTTAAAGTTTTATTTTAAATA-TT
64 ATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
34282654 CTATTTTATTT
1 C-ATTTTATTT
34282665 CACTTTAATT
Statistics
Matches: 183, Mismatches: 16, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
96 2 0.01
97 6 0.03
98 67 0.37
99 6 0.03
100 12 0.07
103 7 0.04
104 74 0.40
105 4 0.02
106 2 0.01
107 3 0.02
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (98 bp):
CATTTTATTTTAATAAAATATTTTATTTTAATATTTTATTTTATTTTAACATTACCTAATTAAAT
TAAATTGTATTTAAAGTTTTATTTTAAATATTT
Found at i:34282660 original size:98 final size:98
Alignment explanation
Indices: 34282384--34282653 Score: 423
Period size: 104 Copynumber: 2.7 Consensus size: 98
34282374 TTTTATTTTA
* *
34282384 AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAATTTTATTTTAAAT
1 AATAATTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
* *
34282449 ATTTCATTTAATTTGAATCACGAAAAATAATTTC
66 ATTTCATTT-TTTTGAATCAAGAAAAATAATTTC
*
34282483 AATATTTTATTTTATTTTATTTTATCATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
1 AATA----A-TTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
34282548 TAAATATTTCATTTTTTTGAATCAAGAAAAATAATTTC
61 TAAATATTTCATTTTTTTGAATCAAGAAAAATAATTTC
* *
34282586 AATAATTTATTATATTTTAACATTACTTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
1 AATAATTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
34282651 ATT
66 ATT
34282654 CTATTTTATT
Statistics
Matches: 158, Mismatches: 8, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
98 60 0.38
99 5 0.03
103 26 0.16
104 67 0.42
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (98 bp):
AATAATTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
ATTTCATTTTTTTGAATCAAGAAAAATAATTTC
Found at i:34282777 original size:9 final size:9
Alignment explanation
Indices: 34282763--34282870 Score: 82
Period size: 9 Copynumber: 12.1 Consensus size: 9
34282753 CCAGCAACTC
34282763 ACATAATTT
1 ACATAATTT
34282772 ACATAATTT
1 ACATAATTT
34282781 ACATAA--T
1 ACATAATTT
*
34282788 ACATAACTT
1 ACATAATTT
*
34282797 ACATAATTG
1 ACATAATTT
*
34282806 AAAGTTTGAATTT
1 ACA---T-AATTT
*
34282819 -CATAACTT
1 ACATAATTT
34282827 ACATAATTT
1 ACATAATTT
*
34282836 ACATAACTT
1 ACATAATTT
34282845 ACATAA--T
1 ACATAATTT
* *
34282852 ACATGACTT
1 ACATAATTT
34282861 ACATAATTT
1 ACATAATTT
34282870 A
1 A
34282871 AAGATCAAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
7 13 0.16
8 4 0.05
9 56 0.71
12 2 0.03
13 4 0.05
ACGTcount: A:0.44, C:0.14, G:0.04, T:0.38
Consensus pattern (9 bp):
ACATAATTT
Found at i:34282792 original size:16 final size:16
Alignment explanation
Indices: 34282771--34282867 Score: 81
Period size: 16 Copynumber: 6.1 Consensus size: 16
34282761 TCACATAATT
*
34282771 TACATAATTTACATAA
1 TACATAACTTACATAA
34282787 TACATAACTTACATAA
1 TACATAACTTACATAA
** * ** *
34282803 TTGA-AAGTTTGA-AT
1 TACATAACTTACATAA
*
34282817 TTCATAACTTACATAA
1 TACATAACTTACATAA
34282833 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
*
34282851 TACATGACTTACATAA
1 TACATAACTTACATAA
34282867 T
1 T
34282868 TTAAAGATCA
Statistics
Matches: 63, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
14 4 0.06
15 10 0.16
16 34 0.54
18 15 0.24
ACGTcount: A:0.44, C:0.14, G:0.04, T:0.37
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:34282882 original size:64 final size:64
Alignment explanation
Indices: 34282758--34282885 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
34282748 GTTCACCAGC
* * **
34282758 AACTCACATAATTTACATAATTTACATAATACATAACTTACATAATTGAAAGTTTGAATTTCAT
1 AACTCACATAATTTACATAACTTACATAATACATAACTTACATAATTGAAAGATCAAATTTCAT
* * *
34282822 AACTTACATAATTTACATAACTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCAT
1 AACTCACATAATTTACATAACTTACATAATACATAACTTACATAATTGAAAGATCAAATTTCAT
34282886 TACCTTATGT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.37
Consensus pattern (64 bp):
AACTCACATAATTTACATAACTTACATAATACATAACTTACATAATTGAAAGATCAAATTTCAT
Found at i:34282929 original size:9 final size:9
Alignment explanation
Indices: 34282905--34282976 Score: 60
Period size: 9 Copynumber: 8.2 Consensus size: 9
34282895 TCGTACATAA
34282905 TACATAACT
1 TACATAACT
* *
34282914 TAAATAATT
1 TACATAACT
34282923 TACATAACT
1 TACATAACT
34282932 TACATAA--
1 TACATAACT
*
34282939 TACATAA-A
1 TACATAACT
* * *
34282947 TATATATCA
1 TACATAACT
34282956 TATCATAACT
1 TA-CATAACT
34282966 TACATAACT
1 TACATAACT
34282975 TA
1 TA
34282977 ATTATACTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 7 0.14
8 5 0.10
9 33 0.65
10 6 0.12
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (9 bp):
TACATAACT
Found at i:34282939 original size:34 final size:34
Alignment explanation
Indices: 34282898--34282972 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
34282888 CCTTATGTCG
* *
34282898 TACATAATACATAACT-TAAATAATTTACATAACT
1 TACATAATACATAAATATAAATAATAT-CATAACT
* *
34282932 TACATAATACATAAATATATATCATATCATAACT
1 TACATAATACATAAATATAAATAATATCATAACT
34282966 TACATAA
1 TACATAA
34282973 CTTAATTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.35
Consensus pattern (34 bp):
TACATAATACATAAATATAAATAATATCATAACT
Found at i:34284732 original size:47 final size:47
Alignment explanation
Indices: 34284661--34284979 Score: 467
Period size: 47 Copynumber: 6.7 Consensus size: 47
34284651 CCCTTCGGGA
* * * * * *
34284661 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34284708 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34284755 CTTATCACATAGATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34284802 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34284849 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34284898 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34284947 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
34284980 GCGTAAAATC
Statistics
Matches: 254, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
47 140 0.55
49 114 0.45
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34286603 original size:35 final size:35
Alignment explanation
Indices: 34286564--34286634 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
34286554 CACTTGCCTC
*
34286564 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
*
34286599 TTCCCATTCTCCCATGCTGTCTGCCACCAACACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
34286634 T
1 T
34286635 CACACACTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.18, C:0.46, G:0.10, T:0.25
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
Found at i:34287033 original size:12 final size:12
Alignment explanation
Indices: 34287016--34287065 Score: 93
Period size: 12 Copynumber: 4.2 Consensus size: 12
34287006 ATTAAAACAT
34287016 AAAAAAATATAC
1 AAAAAAATATAC
34287028 AAAAAAATATAC
1 AAAAAAATATAC
34287040 -AAAAAATATAC
1 AAAAAAATATAC
34287051 AAAAAAATATAC
1 AAAAAAATATAC
34287063 AAA
1 AAA
34287066 TTTTTTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.30
12 26 0.70
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAAATATAC
Found at i:34287047 original size:23 final size:23
Alignment explanation
Indices: 34287009--34287065 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
34286999 TATATATATT
*
34287009 AAAACATA-AAAAAATATACAAA
1 AAAATATACAAAAAATATACAAA
34287031 AAAATATACAAAAAATATACAAA
1 AAAATATACAAAAAATATACAAA
34287054 AAAATATACAAA
1 AAAATATACAAA
34287066 TTTTTTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 7 0.21
23 26 0.79
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (23 bp):
AAAATATACAAAAAATATACAAA
Found at i:34287202 original size:11 final size:11
Alignment explanation
Indices: 34287169--34287203 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
34287159 CGGATTCCCC
34287169 TCCCT-TCTCT
1 TCCCTCTCTCT
34287179 CTCCCTCTCTCT
1 -TCCCTCTCTCT
34287191 TCCCTCTCTCT
1 TCCCTCTCTCT
34287202 TC
1 TC
34287204 TTTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
TCCCTCTCTCT
Done.