Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 118 of 410
Found at i:35437951 original size:27 final size:27
Alignment explanation
Indices: 35437895--35437952 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
35437885 GAGTTTGATC
* * * *
35437895 ATATAGCACTAAGTGTGCGAGTTGATT
1 ATATAGCACGAAGTGTGCGAGCTCACT
35437922 ATATAGCACGAAGTGTGCG-GACTCACT
1 ATATAGCACGAAGTGTGCGAG-CTCACT
35437949 ATAT
1 ATAT
35437953 GCTTTTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (27 bp):
ATATAGCACGAAGTGTGCGAGCTCACT
Found at i:35441625 original size:27 final size:27
Alignment explanation
Indices: 35441607--35441675 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
35441597 ATAGTGAGTC
35441607 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
35441634 CGCACACTTAGTGCTATATGATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
35441661 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
35441676 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:35448844 original size:27 final size:28
Alignment explanation
Indices: 35448788--35448857 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
35448778 AAATTTGTAC
35448788 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
35448816 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
35448843 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
35448858 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:35448868 original size:27 final size:27
Alignment explanation
Indices: 35448788--35448869 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
35448778 AAATTTGTAC
* *
35448788 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
35448816 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
35448843 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
35448870 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:35452593 original size:28 final size:27
Alignment explanation
Indices: 35452532--35452601 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
35452522 ATAGTGAGTC
*
35452532 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
35452559 CGCACACTTAGTGCTATATGATCCAACT
1 CGCACACTTAGTGCTATATAAT-CAACT
35452587 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35452602 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:35457544 original size:28 final size:27
Alignment explanation
Indices: 35457494--35457557 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 27
35457484 CGTGTCCATG
*
35457494 GCCCGTGTCCCTCACAGGCCATGACAC
1 GCCCATGTCCCTCACAGGCCATGACAC
* *
35457521 GCCTATGTCCCTTACACGGCCATGACAC
1 GCCCATGTCCCTCACA-GGCCATGACAC
35457549 GCCCATGTC
1 GCCCATGTC
35457558 TCAGTCTATG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 13 0.41
28 19 0.59
ACGTcount: A:0.19, C:0.42, G:0.20, T:0.19
Consensus pattern (27 bp):
GCCCATGTCCCTCACAGGCCATGACAC
Found at i:35459906 original size:4 final size:4
Alignment explanation
Indices: 35459897--35459931 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
35459887 TTACTAACAA
35459897 TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
35459932 TTTTTTAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:35460932 original size:6 final size:6
Alignment explanation
Indices: 35460921--35460947 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
35460911 TAAATAAAGG
35460921 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
35460948 TAATAAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:35464531 original size:32 final size:33
Alignment explanation
Indices: 35464495--35464584 Score: 105
Period size: 32 Copynumber: 2.8 Consensus size: 33
35464485 CTCAATCGGC
* * * *
35464495 TATATCAAACTACACCTAGATACACATTCGA-T
1 TATATCCAACTACACATATATACACATTCAACT
*
35464527 TATATCCAA-TCACACATATATAGACATTCAACT
1 TATATCCAACT-ACACATATATACACATTCAACT
35464560 T-TATCCAACTACACATATATACACA
1 TATATCCAACTACACATATATACACA
35464585 CTTATATATG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
31 1 0.02
32 45 0.92
33 3 0.06
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.29
Consensus pattern (33 bp):
TATATCCAACTACACATATATACACATTCAACT
Found at i:35465145 original size:20 final size:20
Alignment explanation
Indices: 35465120--35465157 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
35465110 GTTTATTCGC
*
35465120 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
35465140 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
35465158 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:35466803 original size:28 final size:28
Alignment explanation
Indices: 35466771--35466839 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
35466761 GCGTAGATCA
35466771 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
35466799 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
35466827 CGATA-TACCCCTA
1 CGAAATTACCCCTA
35466840 GGGTTTTAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:35473112 original size:20 final size:20
Alignment explanation
Indices: 35473087--35473124 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
35473077 GTTTATTCGC
*
35473087 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
35473107 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
35473125 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:35474767 original size:28 final size:28
Alignment explanation
Indices: 35474735--35474803 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
35474725 GCGTAGATCA
35474735 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
35474763 CGAAATTACCCCTAAAGAGCAAAATTAT
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
35474791 CGATA-TACCCCTA
1 CGAAATTACCCCTA
35474804 GGGTTTTAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:35476588 original size:24 final size:24
Alignment explanation
Indices: 35476556--35476858 Score: 534
Period size: 24 Copynumber: 12.6 Consensus size: 24
35476546 TATCTCAAAT
*
35476556 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
35476580 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
35476604 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
35476628 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
35476652 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
35476676 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
35476700 GCACTATGTGTACGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
35476724 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
35476748 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
35476772 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
35476796 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
35476820 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
35476844 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
35476859 ACATAATAAG
Statistics
Matches: 269, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 269 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:35484587 original size:24 final size:24
Alignment explanation
Indices: 35484555--35484833 Score: 477
Period size: 24 Copynumber: 11.6 Consensus size: 24
35484545 TATCTCAAAT
*
35484555 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
35484579 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
35484603 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
35484627 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
35484651 GCACTATGGGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
35484675 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
35484699 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
35484723 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
35484747 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
35484771 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
** *
35484795 GCACTATGTGTGCGATTGGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
35484819 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
35484834 ACATAATAAG
Statistics
Matches: 244, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 244 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:35493173 original size:18 final size:19
Alignment explanation
Indices: 35493140--35493177 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
35493130 GTTCTTCTGT
35493140 GCTTAAAAAAACACTTTTG
1 GCTTAAAAAAACACTTTTG
*
35493159 GCTTAAAAAGA-ACTTTTG
1 GCTTAAAAAAACACTTTTG
35493177 G
1 G
35493178 AAGAAAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (19 bp):
GCTTAAAAAAACACTTTTG
Found at i:35494293 original size:45 final size:45
Alignment explanation
Indices: 35494108--35494409 Score: 248
Period size: 45 Copynumber: 6.9 Consensus size: 45
35494098 ATATCATACA
** * *
35494108 ATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTC--ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATATCG
* *
35494151 ATGCC-ACTGTCCCAGATAG-GGTCTTACATG-AATCA-A-ATA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACATGAAAACACATATATCG
** * ** * * *
35494192 ATGCTGATGTCCCAGAAATGGTCTTAC-TCATAAC-CACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATATCG
* * * *
35494235 ATTCCAACATCCTAGATGTGGTCTTACATGAAAACACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATATCG
* **
35494280 ATGCCAACGTCCTAGACGTGGTCTTACACAAAAACACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATATCG
* * * *
35494325 ATGCCAATGTCCCAGACGT-GTCATACAAGAATACACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATATCG
* * **
35494369 ATGCCAACGTCCCAGAAGTGGTGTTACACAAAAACACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATAT
35494410 CAGAATCCTA
Statistics
Matches: 209, Mismatches: 38, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
40 2 0.01
41 25 0.12
42 12 0.06
43 45 0.22
44 44 0.21
45 81 0.39
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (45 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATATCG
Found at i:35495524 original size:14 final size:15
Alignment explanation
Indices: 35495507--35495535 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
35495497 GCATGAAAAT
35495507 TTCACACAT-ATAAA
1 TTCACACATAATAAA
35495521 TTCACACATAATAAA
1 TTCACACATAATAAA
35495536 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:35497183 original size:15 final size:15
Alignment explanation
Indices: 35497163--35497194 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
35497153 TGATGGATAG
35497163 TTACTAAGGTAATAT
1 TTACTAAGGTAATAT
35497178 TTACTAAGGTAATAT
1 TTACTAAGGTAATAT
35497193 TT
1 TT
35497195 TCTTACACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (15 bp):
TTACTAAGGTAATAT
Found at i:35501806 original size:48 final size:49
Alignment explanation
Indices: 35501690--35501925 Score: 257
Period size: 48 Copynumber: 4.9 Consensus size: 49
35501680 GGTAAGATGC
* * * *
35501690 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAGTGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATATCAG-AT
* * * * *
35501740 CGATGCCATGTTCAAAACATCGTCTTACACTAGCTCACATGTCT-AGAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATATCAGAT
*
35501788 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATA--A-AT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATATCAGAT
* * * *
35501834 GCCGATGCCATGTTCCAAACACGGTCTTACACTAGCTCACATAT-TGAGGT
1 --CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATATCAGAT
* * *
35501884 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
35501926 CAATGCTGTA
Statistics
Matches: 157, Mismatches: 24, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
46 2 0.01
47 1 0.01
48 114 0.73
49 3 0.02
50 37 0.24
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATATCAGAT
Found at i:35501889 original size:96 final size:96
Alignment explanation
Indices: 35501690--35501931 Score: 353
Period size: 96 Copynumber: 2.5 Consensus size: 96
35501680 GGTAAGATGC
* * *
35501690 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAGTGTCGATGCCATGTTCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA--AATGCCGATGCCATGTTCAA
*
35501755 AACATCGTCTTACACTAGCTCACATGTCTAGAT
64 AACATCGTCTTACACTAGCTCACATATCTAGAT
* *
35501788 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCAAAA
*
35501853 CA-CGGTCTTACACTAGCTCACATAT-TGAGGT
66 CATC-GTCTTACACTAGCTCACATATCT-AGAT
* *
35501884 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGC
35501932 TGTAACACCC
Statistics
Matches: 132, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
95 2 0.02
96 89 0.67
98 41 0.31
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCAAAA
CATCGTCTTACACTAGCTCACATATCTAGAT
Found at i:35502680 original size:31 final size:31
Alignment explanation
Indices: 35502642--35502705 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
35502632 CCTTTTCATA
35502642 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
35502673 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
35502704 TT
1 TT
35502706 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:35502980 original size:23 final size:24
Alignment explanation
Indices: 35502916--35503038 Score: 180
Period size: 24 Copynumber: 5.2 Consensus size: 24
35502906 GGCCTACCCT
*
35502916 CTTTTAATAACTGGGGCCA-AAGCC
1 CTTTTGATAACTGGGG-CATAAGCC
** *
35502940 CTTTCAATAACTGCGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
35502964 CTTTT-ATAACTGGGGCATAAG-C
1 CTTTTGATAACTGGGGCATAAGCC
35502986 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
35503010 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
35503034 CTTTT
1 CTTTT
35503039 TCACTTCCTC
Statistics
Matches: 92, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
22 6 0.07
23 33 0.36
24 53 0.58
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
CTTTTGATAACTGGGGCATAAGCC
Found at i:35503114 original size:20 final size:20
Alignment explanation
Indices: 35503089--35503148 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
35503079 TATGATTACC
35503089 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
35503109 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
35503129 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
35503149 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:35507176 original size:47 final size:46
Alignment explanation
Indices: 35507111--35507466 Score: 317
Period size: 47 Copynumber: 7.6 Consensus size: 46
35507101 GCACTGGCAC
*
35507111 TAAGACAAGGATATCATGTAAGACCATGTTTGGACCATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGA-CATGGCATTTGG
* *
35507158 TAAGACAAGCATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGG-ACATGGCATTTGG
* * * ***
35507205 TAAGATAAGGATATCATGTAAGCCCATGTCAAGACATGGCA-TTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGACATGGCATTTGG
** * *** * *
35507250 TAA-AGCAAGGACCCCGTGTAAGACCATGTCAAGACATGG-AATCGG
1 TAAGA-CAAGGATACCATGTAAGACCATGTTTGGACATGGCATTTGG
* * * ** ** **
35507295 CATTGATTAAGGACT-CCATGTAAGACCACATTAAGATGTGGCA-TTGG
1 TA-AGA-CAAGGA-TACCATGTAAGACCATGTTTGGACATGGCATTTGG
35507342 CACTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 ---TAAGACAAGGATACCATGTAAGACCATGTTTGG-ACATGGCATTTGG
35507392 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGG-ACATGGCATTTGG
** *
35507439 TAAGATGAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
35507467 CCAAGGCATG
Statistics
Matches: 254, Mismatches: 42, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
44 2 0.01
45 39 0.15
46 7 0.03
47 170 0.67
48 23 0.09
49 8 0.03
50 5 0.02
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (46 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGACATGGCATTTGG
Found at i:35507441 original size:234 final size:234
Alignment explanation
Indices: 35507032--35507476 Score: 773
Period size: 234 Copynumber: 1.9 Consensus size: 234
35507022 AAGGATACCA
* *
35507032 TGTAAGACCATGTCAATACATGGCATCGACATTGATTAAGGACTCCATGTAAGACCACATCAAGA
1 TGTAAGACCATGTCAAGACATGGAATCGACATTGATTAAGGACTCCATGTAAGACCACATCAAGA
* *
35507097 TGTGGCACTGGCACTAAGACAAGGATATCATGTAAGACCATGTTTGGACCATGGCATTTGGTAAG
66 TGTGGCACTGGCACTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
35507162 ACAAGCATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATGTAAG
131 ACAAGCATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATGTAAG
* *
35507227 CCCATGTCAAGACATGGCATTGGTAAAGCAAGGACCCCG
196 ACCATGCCAAGACATGGCATTGGTAAAGCAAGGACCCCG
* *
35507266 TGTAAGACCATGTCAAGACATGGAATCGGCATTGATTAAGGACTCCATGTAAGACCACATTAAGA
1 TGTAAGACCATGTCAAGACATGGAATCGACATTGATTAAGGACTCCATGTAAGACCACATCAAGA
*
35507331 TGTGGCATTGGCACTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
66 TGTGGCACTGGCACTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
* * *
35507396 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATGAGGATATCATGTAAG
131 ACAAGCATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATGTAAG
*
35507461 ACCATGCCAAGGCATG
196 ACCATGCCAAGACATG
35507477 TTCTTGATAA
Statistics
Matches: 198, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
234 198 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (234 bp):
TGTAAGACCATGTCAAGACATGGAATCGACATTGATTAAGGACTCCATGTAAGACCACATCAAGA
TGTGGCACTGGCACTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
ACAAGCATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATGTAAG
ACCATGCCAAGACATGGCATTGGTAAAGCAAGGACCCCG
Found at i:35507571 original size:55 final size:53
Alignment explanation
Indices: 35507446--35507641 Score: 200
Period size: 55 Copynumber: 3.6 Consensus size: 53
35507436 TGGTAAGATG
* * * *
35507446 AGGATATCATGTAAGACCATGCCAAGGCATGTTC-TTGAT-AAGTTCTATAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGGCATG-GCATTGATGAA-TTC-ATAAGGAA
* * *
35507500 AGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAATTACTATAAGGCAA
1 AGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAATT-C-ATAAGG-AA
* * * * *
35507556 AGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGTA
1 AGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAATTCATAAGGAA
*
35507608 AGGATACCACGTAAGACCATGTCAAGGCATGGCA
1 AGGATACCATGTAAGACCATGTCAAGGCATGGCA
35507642 ATGGCAAGTT
Statistics
Matches: 121, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
52 4 0.03
53 34 0.28
54 36 0.30
55 43 0.36
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (53 bp):
AGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAATTCATAAGGAA
Found at i:35507653 original size:53 final size:53
Alignment explanation
Indices: 35507446--35507652 Score: 188
Period size: 53 Copynumber: 3.8 Consensus size: 53
35507436 TGGTAAGATG
* * * * *
35507446 AGGATATCATGTAAGACCATGCCAAGGCATGTTC-TTGATAAGTTCTATAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGGCATG-GCATTG-GAAGTTCTATAAGGAA
* * *
35507500 AGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAA-TTACTATAAGGCAA
1 AGGATACCATGTAAGACCATGTCAAGGCATGGCATTG--GAAGTT-CTATAAGG-AA
* * * *
35507556 AGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGTA
1 AGGATACCATGTAAGACCATGTCAAGGCATGGCATTGG-AAGTTCTATAAGGAA
* *
35507608 AGGATACCACGTAAGACCATGTCAAGGCATGGCAATGGCAAGTTC
1 AGGATACCATGTAAGACCATGTCAAGGCATGGCATTGG-AAGTTC
35507653 AAAAGAAAAA
Statistics
Matches: 126, Mismatches: 20, Indels: 15
0.78 0.12 0.09
Matches are distributed among these distances:
52 4 0.03
53 43 0.34
54 35 0.28
55 40 0.32
56 4 0.03
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (53 bp):
AGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGAAGTTCTATAAGGAA
Found at i:35508316 original size:48 final size:48
Alignment explanation
Indices: 35508245--35508348 Score: 208
Period size: 48 Copynumber: 2.2 Consensus size: 48
35508235 TCCTTATGGT
35508245 ATGGCTAAAGAATGGTATGTAAATATTTGATAATGATTAGCTATTGAA
1 ATGGCTAAAGAATGGTATGTAAATATTTGATAATGATTAGCTATTGAA
35508293 ATGGCTAAAGAATGGTATGTAAATATTTGATAATGATTAGCTATTGAA
1 ATGGCTAAAGAATGGTATGTAAATATTTGATAATGATTAGCTATTGAA
35508341 ATGGCTAA
1 ATGGCTAA
35508349 TGAAGAACAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.35
Consensus pattern (48 bp):
ATGGCTAAAGAATGGTATGTAAATATTTGATAATGATTAGCTATTGAA
Found at i:35513515 original size:40 final size:40
Alignment explanation
Indices: 35513466--35513633 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
35513456 TCTTCGGAAT
* * *
35513466 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
35513505 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
35513545 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
35513585 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
35513625 TTAGCCCGG
1 TTAGCCCGG
35513634 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:35521813 original size:39 final size:39
Alignment explanation
Indices: 35521765--35521929 Score: 176
Period size: 39 Copynumber: 4.2 Consensus size: 39
35521755 TCTTCGGAAT
* *
35521765 TTAG-CCGGATATAACACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
* * * *
35521803 TTAACCCGGATTTGGTA-ACTTGCACAAATGCC-TCGGGTC
1 TTAGCCCGGATAT--AACACTAGCACAAATGCCTTCGGGTC
* *
35521842 TTAGCCCGGATATAACAACTCGCACGAATGCCTT-GGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* *
35521881 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
35521921 TTAGCCCGG
1 TTAGCCCGG
35521930 GTATCATTCA
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
37 1 0.01
38 3 0.03
39 72 0.69
40 27 0.26
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
Found at i:35521910 original size:78 final size:79
Alignment explanation
Indices: 35521756--35521929 Score: 194
Period size: 78 Copynumber: 2.2 Consensus size: 79
35521746 AACCGAGTCT
* * * **
35521756 CTTCGGAATTTAG-CCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTA
1 CTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATA
*
35521820 ACTTGCACAAATGC
66 ACTAGCACAAATGC
* ** *
35521834 C-TCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTT-GGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
* *
35521896 TCACTAGCATAAATGC
64 TAACTAGCACAAATGC
35521912 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
35521930 GTATCATTCA
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
77 8 0.10
78 42 0.53
79 27 0.34
80 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATA
ACTAGCACAAATGC
Found at i:35525711 original size:47 final size:45
Alignment explanation
Indices: 35525658--35525968 Score: 221
Period size: 47 Copynumber: 6.7 Consensus size: 45
35525648 TATGTAAGAC
*** *
35525658 CATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATAT
1 CATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGACAAGGATAT
* **
35525705 CATGTAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCC
1 CATGTAAGACCATGTCAAGACATGGCATTGGTAAGACAAGGATAT
* * * * *
35525750 CGTGTAAGACCATGTCAAGACATGGCATCGGCATTGATTAAGGACT-T
1 CATGTAAGACCATGTCAAGACATGGCATTGGTA-AGA-CAAGGA-TAT
* ** ** *
35525797 CATGTAGGACCACATCAAGATGTGGCATTGGCACTAAGACAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCATTGG---TAAGACAAGGATAT
***
35525845 CATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATAT
1 CATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGACAAGGATAT
* ** * *
35525892 CATGTAAGACCACATTTGGAG-CATGACATTTGGTAAGATAAGGATAT
1 CATGTAAGA-C-CATGTCAAGACATGGCA-TTGGTAAGACAAGGATAT
* * * *
35525939 CATGTAAAACCATGCCAAGGCATGGTATTG
1 CATGTAAGACCATGTCAAGACATGGCATTG
35525969 ATAATTTCTA
Statistics
Matches: 205, Mismatches: 47, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
45 52 0.25
46 15 0.07
47 100 0.49
48 20 0.10
49 13 0.06
50 5 0.02
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (45 bp):
CATGTAAGACCATGTCAAGACATGGCATTGGTAAGACAAGGATAT
Found at i:35526070 original size:26 final size:26
Alignment explanation
Indices: 35526033--35526083 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
35526023 ATGAGTTACC
*
35526033 ATAAGGCGAAGGTCCCATGTAAGACT
1 ATAAGGCAAAGGTCCCATGTAAGACT
35526059 ATAAGGCAAAGGTCCCATGTAAGAC
1 ATAAGGCAAAGGTCCCATGTAAGAC
35526084 CATGCCAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (26 bp):
ATAAGGCAAAGGTCCCATGTAAGACT
Found at i:35526117 original size:53 final size:53
Alignment explanation
Indices: 35526059--35526165 Score: 126
Period size: 53 Copynumber: 2.0 Consensus size: 53
35526049 ATGTAAGACT
* * * * * *
35526059 ATAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC
1 ATAAGGC-AAGGATACCACGTAAGACCATGCCAAGACATAGCAATGGTAAGTTC
* *
35526112 ATAAGGCGAGGATACCACGTAAGACCATGTCAAGACATAGCAATGGTAAGTTC
1 ATAAGGCAAGGATACCACGTAAGACCATGCCAAGACATAGCAATGGTAAGTTC
35526165 A
1 A
35526166 AAAAGGAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
52 3 0.07
53 42 0.93
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAGGATACCACGTAAGACCATGCCAAGACATAGCAATGGTAAGTTC
Found at i:35530422 original size:31 final size:31
Alignment explanation
Indices: 35530373--35530459 Score: 140
Period size: 31 Copynumber: 2.8 Consensus size: 31
35530363 TTCAATCTCA
35530373 GCATAT-ACTGGGCCGAAGCCTTTACATTAT
1 GCATATCACTGGGCCGAAGCCTTTACATTAT
* *
35530403 GCATATCACTGGGCTGAAGCCTTTTCATTAT
1 GCATATCACTGGGCCGAAGCCTTTACATTAT
*
35530434 TCATATCACTGGGCCGAAGCCTTTAC
1 GCATATCACTGGGCCGAAGCCTTTAC
35530460 TGGAACAATA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 6 0.12
31 45 0.88
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (31 bp):
GCATATCACTGGGCCGAAGCCTTTACATTAT
Found at i:35530702 original size:24 final size:24
Alignment explanation
Indices: 35530664--35530772 Score: 105
Period size: 25 Copynumber: 4.4 Consensus size: 24
35530654 CTGGAGCCCT
*
35530664 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTGATAAACTGGGGC-AA
35530689 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
* * *
35530714 ATCCCTTTTCGGTAAACTGAGGCAA
1 AGCCCTTTT-GATAAACTGGGGCAA
* *
35530739 AGCCCTTTTCGGT-AACTGGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
35530763 AGCCCTTTTG
1 AGCCCTTTTG
35530773 CACTTCCTCC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
23 1 0.01
24 25 0.33
25 38 0.51
26 11 0.15
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:35530750 original size:25 final size:26
Alignment explanation
Indices: 35530677--35530771 Score: 126
Period size: 25 Copynumber: 3.8 Consensus size: 26
35530667 CTCTTTTAAT
*
35530677 AACTGGGGCAAAAGCCCTTTT-GATA
1 AACTGGGGCAAAAGCCCTTTTCGGTA
*
35530702 AACTGGGGCAAAATCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGGTA
*
35530728 AACTGAGGC-AAAGCCCTTTTCGGT-
1 AACTGGGGCAAAAGCCCTTTTCGGTA
*
35530752 AACTGGGGC-ATAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
35530772 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.29
25 34 0.54
26 11 0.17
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGGTA
Found at i:35570287 original size:26 final size:26
Alignment explanation
Indices: 35570256--35570307 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
35570246 CCCGAGAGTG
*
35570256 TGTTTCCACTGAAGCCATAATGTGTA
1 TGTTTCAACTGAAGCCATAATGTGTA
35570282 TGTTTCAACTGAAGCCATAATGTGTA
1 TGTTTCAACTGAAGCCATAATGTGTA
35570308 AAAGATTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (26 bp):
TGTTTCAACTGAAGCCATAATGTGTA
Found at i:35572789 original size:68 final size:68
Alignment explanation
Indices: 35572675--35572811 Score: 229
Period size: 68 Copynumber: 2.0 Consensus size: 68
35572665 AAAGCCGAAC
* * *
35572675 GGCTAATGTGAAATACATGTGTGATATGTATGTGTGGTAAAACCGAATGGCTAATGTGAAATACA
1 GGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATACA
35572740 TGT
66 TGT
* *
35572743 GGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
1 GGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATACA
35572808 TGT
66 TGT
35572811 G
1 G
35572812 TGATATGTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (68 bp):
GGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATACA
TGT
Found at i:35572794 original size:48 final size:48
Alignment explanation
Indices: 35572742--35573042 Score: 440
Period size: 48 Copynumber: 6.3 Consensus size: 48
35572732 GAAATACATG
*
35572742 TGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* * *
35572790 TGGCTAATGTGAAATACATGTGTGATATGTATGTGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* *
35572838 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* *
35572886 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* * **
35572934 TGGCTAATGTGAAATATATATGAGATGTGTATATGTCTTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* * ** * *
35572982 TGGCGAATGTAAAATATGTATGAGATATGAATATGTGGTAAAGCTGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
35573030 TGGCTAATGTGAA
1 TGGCTAATGTGAA
35573043 TGTTGTAACA
Statistics
Matches: 232, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 232 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
Found at i:35573137 original size:37 final size:37
Alignment explanation
Indices: 35573087--35573172 Score: 154
Period size: 37 Copynumber: 2.3 Consensus size: 37
35573077 GGAAATATAT
*
35573087 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
35573124 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
35573161 TCCAGGTAAGAC
1 TCCGGGTAAGAC
35573173 TTTGTAATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:35575116 original size:40 final size:40
Alignment explanation
Indices: 35575049--35575367 Score: 408
Period size: 40 Copynumber: 7.8 Consensus size: 40
35575039 GAGAATTGAG
* * *
35575049 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCT
*
35575089 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
35575129 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCC---GA--A---GAGCATTCGTGCT
* *
35575177 AGTGATGTATCCGAACTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
35575217 AGTGATGTATCCGGACTAAGTTCCGGAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
35575257 AG-GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
35575296 AGTAATGCAACCGGACTAAGTCCCGAAGAGTATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
35575336 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
35575368 ATCATGCTGG
Statistics
Matches: 247, Mismatches: 22, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
39 40 0.16
40 166 0.67
43 3 0.01
45 3 0.01
48 35 0.14
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:35575225 original size:88 final size:87
Alignment explanation
Indices: 35575076--35575331 Score: 368
Period size: 88 Copynumber: 3.0 Consensus size: 87
35575066 AAATCCCGAA
35575076 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT-TCGAAGAGCATTCGTGCTAGTGATGTATC
1 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCT-GAAGAGCATTCGTGCTAGTGATGTATC
35575140 CGGACTAAGTTCCGAAGAGCATTC
65 CGGACTAAGTTCCGAAGAG-ATTC
*
35575164 GAGCATTCGTGCTAGTGATGTATCCGAACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTATCC
1 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTATCC
35575229 GGACTAAGTTCC---G-GA---
66 GGACTAAGTTCCGAAGAGATTC
* * * *
35575244 GAGCATTCGTGCTAG-GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACC
1 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTATCC
*
35575308 GGACTAAGTCCCGAAGAGTATTC
66 GGACTAAGTTCCGAAGAG-ATTC
35575331 G
1 G
35575332 TGCTAGTGAT
Statistics
Matches: 152, Mismatches: 7, Indels: 19
0.85 0.04 0.11
Matches are distributed among these distances:
79 55 0.36
80 15 0.10
82 1 0.01
83 2 0.01
84 2 0.01
85 1 0.01
87 1 0.01
88 74 0.49
89 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (87 bp):
GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTATCC
GGACTAAGTTCCGAAGAGATTC
Found at i:35575296 original size:79 final size:80
Alignment explanation
Indices: 35575164--35575367 Score: 302
Period size: 79 Copynumber: 2.6 Consensus size: 80
35575154 AAGAGCATTC
* * * * *
35575164 GAGCATTCGTGCTAGTGATGTATCCGAACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTATCC
1 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACC
* *
35575229 GGACTAAGTTCCGGA
66 GGACTAAGTCCCGAA
35575244 GAGCATTCGTGCTAG-GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACC
1 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACC
35575308 GGACTAAGTCCCGAA
66 GGACTAAGTCCCGAA
* * * *
35575323 GAGTATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
35575368 ATCATGCTGG
Statistics
Matches: 112, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
79 71 0.63
80 41 0.37
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACC
GGACTAAGTCCCGAA
Found at i:35578216 original size:48 final size:48
Alignment explanation
Indices: 35578164--35578464 Score: 458
Period size: 48 Copynumber: 6.3 Consensus size: 48
35578154 GAAATACATG
*
35578164 TGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* * *
35578212 TGGCTAATGTGAAATACATGTGTGATATGTATGTGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* *
35578260 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* *
35578308 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* * **
35578356 TGGCTAATGTGAAATATATATGAGATGTGTATATGTCTTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* ** *
35578404 TGGCGAATGTGAAATATGTATGAGATATGAATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
35578452 TGGCTAATGTGAA
1 TGGCTAATGTGAA
35578465 TGTTGTAACA
Statistics
Matches: 235, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 235 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
Found at i:35578216 original size:68 final size:68
Alignment explanation
Indices: 35578097--35578233 Score: 220
Period size: 68 Copynumber: 2.0 Consensus size: 68
35578087 AAAGCCGAAC
* * * *
35578097 GGCTAATGTGAAATACATGTGTGATATGTATGTGTGGTAAAACCGAGTGGCTAATGTGAAATACA
1 GGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATACA
35578162 TGT
66 TGT
* *
35578165 GGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
1 GGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATACA
35578230 TGT
66 TGT
35578233 G
1 G
35578234 TGATATGTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (68 bp):
GGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATACA
TGT
Found at i:35578561 original size:37 final size:37
Alignment explanation
Indices: 35578511--35578594 Score: 150
Period size: 37 Copynumber: 2.3 Consensus size: 37
35578501 AAATATATTT
*
35578511 CGGGTGAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
35578548 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
35578585 CAGGTAAGAC
1 CGGGTAAGAC
35578595 TTTGTAATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:35581067 original size:12 final size:12
Alignment explanation
Indices: 35581050--35581075 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
35581040 GAAGTGATGC
35581050 ATCGAGTAAAGA
1 ATCGAGTAAAGA
35581062 ATCGAGTAAAGA
1 ATCGAGTAAAGA
35581074 AT
1 AT
35581076 TTGTTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.23, T:0.19
Consensus pattern (12 bp):
ATCGAGTAAAGA
Found at i:35584523 original size:40 final size:40
Alignment explanation
Indices: 35584478--35584644 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
35584468 CGGAATATAA
35584478 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
35584518 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
35584558 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
35584598 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
35584637 CCGGATAT
1 CCGGATAT
35584645 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:35589529 original size:19 final size:17
Alignment explanation
Indices: 35589488--35589535 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 17
35589478 ATACTCCAAT
35589488 TGAGATTTATTGAGTCC
1 TGAGATTTATTGAGTCC
*
35589505 -GAGATTTATTGGGTCGC
1 TGAGATTTATTGAGTC-C
35589522 ATGAGA-TTATTGAG
1 -TGAGATTTATTGAG
35589536 CGTATAGGGC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 14 0.54
17 1 0.04
18 7 0.27
19 4 0.15
ACGTcount: A:0.25, C:0.08, G:0.29, T:0.38
Consensus pattern (17 bp):
TGAGATTTATTGAGTCC
Found at i:35593808 original size:40 final size:40
Alignment explanation
Indices: 35593763--35593929 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
35593753 CGGAATATAA
35593763 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
35593803 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
35593843 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
35593883 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
35593922 CCGGATAT
1 CCGGATAT
35593930 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:35601762 original size:40 final size:40
Alignment explanation
Indices: 35601717--35601883 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
35601707 CGGAATATAA
35601717 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
35601757 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
35601797 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
35601837 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
35601876 CCGGATAT
1 CCGGATAT
35601884 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:35604484 original size:71 final size:71
Alignment explanation
Indices: 35604400--35604563 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35604390 CGATTTGTCT
35604400 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35604465 CTTTCA
66 CTTTCA
35604471 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35604536 CTTTCA
66 CTTTCA
35604542 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
35604564 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:35604601 original size:71 final size:70
Alignment explanation
Indices: 35604400--35604597 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
35604390 CGATTTGTCT
* * * *
35604400 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35604465 CTTTCA
65 CTTTCA
* * * *
35604471 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35604536 CTTTCA
65 CTTTCA
* *
35604542 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
35604598 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:35612059 original size:71 final size:71
Alignment explanation
Indices: 35611973--35612136 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35611963 CGATTTGTCT
35611973 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35612038 CTTTCA
66 CTTTCA
35612044 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35612109 CTTTCA
66 CTTTCA
35612115 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
35612137 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:35612174 original size:71 final size:70
Alignment explanation
Indices: 35611973--35612170 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
35611963 CGATTTGTCT
* * * *
35611973 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35612038 CTTTCA
65 CTTTCA
* * * *
35612044 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35612109 CTTTCA
65 CTTTCA
* *
35612115 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
35612171 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:35615865 original size:40 final size:40
Alignment explanation
Indices: 35615769--35615959 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
35615759 CGAATGGTAT
* * * * * *
35615769 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
35615810 CCGGGTCAATTCCCGAAGACATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
35615850 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
35615890 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
35615930 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
35615960 ATCACTATAA
Statistics
Matches: 133, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 110 0.83
41 23 0.17
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:35615975 original size:40 final size:39
Alignment explanation
Indices: 35615770--35615987 Score: 222
Period size: 40 Copynumber: 5.4 Consensus size: 39
35615760 GAATGGTATC
* * *
35615770 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
* * * *
35615810 CCGGG-TCAATTCCCGAAGACATTTGTGCGAGTTACCAAAAC
1 -CGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAAT
* * *
35615851 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAAT
*
35615891 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * * *
35615930 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
35615971 CGGGCTATGTCCCGAAG
1 CGGGCTAAGTCCCGAAG
35615988 ACAATCGAGC
Statistics
Matches: 154, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 4 0.03
40 120 0.78
41 30 0.19
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:35615983 original size:120 final size:121
Alignment explanation
Indices: 35615769--35615987 Score: 298
Period size: 120 Copynumber: 1.8 Consensus size: 121
35615759 CGAATGGTAT
* *
35615769 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGACATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGACAATT
* * *
35615834 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
35615890 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGACAAT
* * * *
35615953 TGTGCGAATCACTATAATCGGGCTATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
35615988 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
119 1 0.01
120 57 0.68
121 26 0.31
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGACAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:35616008 original size:40 final size:40
Alignment explanation
Indices: 35615923--35616008 Score: 95
Period size: 40 Copynumber: 2.1 Consensus size: 40
35615913 TGTGCGAGTT
* * *
35615923 ACTA-AATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATC
1 ACTATAAT-CGGGCTAATTCCCGAAGACAATCGAGCGAATC
*
35615963 ACTATAATCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTC
1 ACTATAATCGGGCTAAT-TCCCGAAGACAATCGAGCGAATC
*
35616003 GCTATA
1 ACTATA
35616009 TCCGGTTAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
39 2 0.05
40 34 0.87
41 3 0.08
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTATAATCGGGCTAATTCCCGAAGACAATCGAGCGAATC
Found at i:35616013 original size:80 final size:79
Alignment explanation
Indices: 35615767--35615990 Score: 252
Period size: 80 Copynumber: 2.8 Consensus size: 79
35615757 TTCGAATGGT
* * * *
35615767 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAAT-TCCCGAAGACA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAAT-CGGG-CTATGTCCCGAAGACA
*
35615831 TTTGTGCGAGTTACCAA
63 TTTGTGCGAGTTACTAA
* * * * * * * * *
35615848 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAATCGGGCTATGTCCCGAAGACATT
35615913 TGTGCGAGTTACTAA
65 TGTGCGAGTTACTAA
* *
35615928 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAATCGGGCTATGTCCCGAAGACA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AATCGGGCTATGTCCCGAAGACA
35615991 ATCGAGCGAG
Statistics
Matches: 116, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
79 3 0.03
80 81 0.70
81 32 0.28
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAATCGGGCTATGTCCCGAAGACATTT
GTGCGAGTTACTAA
Found at i:35617384 original size:48 final size:47
Alignment explanation
Indices: 35617328--35617454 Score: 178
Period size: 40 Copynumber: 2.8 Consensus size: 47
35617318 TTAACCCTTG
*
35617328 TATTCAACAAGTCATTCAATTTTATCCATATATATATATATATATATT
1 TATTCAACAAGTCATTCAATTTGATCCATATA-ATATATATATATATT
35617376 TATTCAACAAGTCATTCAATTTGATCC-------ATATATATATATT
1 TATTCAACAAGTCATTCAATTTGATCCATATAATATATATATATATT
35617416 TATTCAACAAGTCATTCAATTTGATCCATATACATATAT
1 TATTCAACAAGTCATTCAATTTGATCCATATA-ATATAT
35617455 TTAGGGCATT
Statistics
Matches: 70, Mismatches: 1, Indels: 16
0.80 0.01 0.18
Matches are distributed among these distances:
40 40 0.57
48 30 0.43
ACGTcount: A:0.39, C:0.15, G:0.04, T:0.43
Consensus pattern (47 bp):
TATTCAACAAGTCATTCAATTTGATCCATATAATATATATATATATT
Found at i:35617416 original size:40 final size:40
Alignment explanation
Indices: 35617363--35617457 Score: 181
Period size: 40 Copynumber: 2.4 Consensus size: 40
35617353 CCATATATAT
35617363 ATATATATATATTTATTCAACAAGTCATTCAATTTGATCC
1 ATATATATATATTTATTCAACAAGTCATTCAATTTGATCC
35617403 ATATATATATATTTATTCAACAAGTCATTCAATTTGATCC
1 ATATATATATATTTATTCAACAAGTCATTCAATTTGATCC
*
35617443 ATATACATATATTTA
1 ATATATATATATTTA
35617458 GGGCATTTTA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.43
Consensus pattern (40 bp):
ATATATATATATTTATTCAACAAGTCATTCAATTTGATCC
Found at i:35622386 original size:40 final size:40
Alignment explanation
Indices: 35622332--35622428 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
35622322 CTATCTCAAT
*
35622332 ATTGCACACTTAGTGCCACATATAGCCGAAGCTATTCCAG
1 ATTGCACACTTAGTGCCACATATAGCCGAAGCTATTCCAA
* * ** *
35622372 TTTGCACACTTAGTGCTATTTATAGCCGAAGCTATTTCAA
1 ATTGCACACTTAGTGCCACATATAGCCGAAGCTATTCCAA
*
35622412 ATCGCACACTTAGTGCC
1 ATTGCACACTTAGTGCC
35622429 GAACATAGTT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (40 bp):
ATTGCACACTTAGTGCCACATATAGCCGAAGCTATTCCAA
Found at i:35639648 original size:48 final size:48
Alignment explanation
Indices: 35639586--35639719 Score: 187
Period size: 48 Copynumber: 2.8 Consensus size: 48
35639576 AGATCCTGCA
* * **
35639586 TAAGACCATATCTGGGATATGTTATCGGCATCGATATGTGATCCCATG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGATCCCATG
* *
35639634 TAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGTGATCCCATG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGATCCCATG
* * *
35639682 TAAGACCATGTTTGGGACATGGCATTGGCATTGATATG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATG
35639720 AGAACATTGT
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGATCCCATG
Found at i:35642505 original size:37 final size:37
Alignment explanation
Indices: 35642452--35642554 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
35642442 CGAATAGTCC
* *
35642452 CCACACGTAGTTATCGGGTCTTACCCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
35642489 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
35642526 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
35642555 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:35642753 original size:48 final size:48
Alignment explanation
Indices: 35642695--35643178 Score: 842
Period size: 48 Copynumber: 10.0 Consensus size: 48
35642685 ATATACACAC
* *
35642695 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
35642743 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
35642791 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
35642839 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
35642887 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
35642937 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
35642985 ATCTCATACATATTTCACATTAGCCATTGGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
35643033 ATCTCATACATATTCCACATTAGCCATTCGGTTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
35643081 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
35643129 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
35643177 AT
1 AT
35643179 ATATTTATCT
Statistics
Matches: 415, Mismatches: 19, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
48 369 0.89
50 46 0.11
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:35663902 original size:21 final size:20
Alignment explanation
Indices: 35663866--35663906 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
35663856 CAAATCCATG
*
35663866 CCTATTATTCGAATTCGTTTA
1 CCTATTATTAGAATTC-TTTA
*
35663887 CCTATTATTAGTATTCTTTA
1 CCTATTATTAGAATTCTTTA
35663907 TATTACAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.51
Consensus pattern (20 bp):
CCTATTATTAGAATTCTTTA
Found at i:35666376 original size:27 final size:27
Alignment explanation
Indices: 35666191--35666361 Score: 229
Period size: 27 Copynumber: 6.3 Consensus size: 27
35666181 TTTGCTCTTA
* **
35666191 TAAATCAAGGGTAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTG
* * *
35666218 TAAATTGATGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTG
*
35666245 TAAATCGAGGGTAAAATAGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTG
*
35666272 TAAA-CTGAGGGTAAAACGGTAATTCTG
1 TAAATC-GAGGGTAAAATGGTAATTCTG
*
35666299 TAAATCGAGGGTAAAATAGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTG
35666326 TAAA-CTGAGGGTAAAATGGTAATTCTG
1 TAAATC-GAGGGTAAAATGGTAATTCTG
35666353 TAAATCGAG
1 TAAATCGAG
35666362 AGTACTTTGG
Statistics
Matches: 127, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
26 2 0.02
27 123 0.97
28 2 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTG
Found at i:35666390 original size:54 final size:54
Alignment explanation
Indices: 35666191--35666361 Score: 297
Period size: 54 Copynumber: 3.2 Consensus size: 54
35666181 TTTGCTCTTA
* * * *
35666191 TAAATCAAGGGTAAAACAGTAATTCTGTAAATTGATGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTG
35666245 TAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTG
*
35666299 TAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTG
35666353 TAAATCGAG
1 TAAATCGAG
35666362 AGTACTTTGG
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 112 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
TAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTG
Found at i:35667755 original size:15 final size:15
Alignment explanation
Indices: 35667735--35667777 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
35667725 CCTAGAGAAG
*
35667735 GAAGAAAAGGGAGAC
1 GAAGAATAGGGAGAC
*
35667750 GAAGAATAGGGAGAT
1 GAAGAATAGGGAGAC
*
35667765 GGAGAATAGGGAG
1 GAAGAATAGGGAG
35667778 TAAGGAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.47, C:0.02, G:0.44, T:0.07
Consensus pattern (15 bp):
GAAGAATAGGGAGAC
Found at i:35672198 original size:40 final size:39
Alignment explanation
Indices: 35672030--35672200 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
35672020 AGAAATTGAA
* *
35672030 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
35672070 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
35672110 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
35672150 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
35672190 TGATATCCGGG
1 TGATATCCGGG
35672201 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:35680117 original size:40 final size:39
Alignment explanation
Indices: 35679949--35680119 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
35679939 AGAAATTGAA
* *
35679949 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
35679989 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
35680029 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
35680069 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
35680109 TGATATCCGGG
1 TGATATCCGGG
35680120 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:35686559 original size:20 final size:18
Alignment explanation
Indices: 35686522--35686564 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
35686512 TTCAAAATTT
35686522 TGGGCCCACATGCTTGTG
1 TGGGCCCACATGCTTGTG
* *
35686540 TGGGCCCCCATGCCTGTG
1 TGGGCCCACATGCTTGTG
35686558 T-GGCCCA
1 TGGGCCCA
35686565 TACACCCAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.09, C:0.35, G:0.33, T:0.23
Consensus pattern (18 bp):
TGGGCCCACATGCTTGTG
Found at i:35687909 original size:28 final size:27
Alignment explanation
Indices: 35687873--35687982 Score: 123
Period size: 28 Copynumber: 4.0 Consensus size: 27
35687863 CTGCCAGAAT
* *
35687873 AGAT-ATTGTGACAGAGTCACCAAATAC
1 AGATAATTGTGGCAGAGCCACCAAA-AC
*
35687900 AGATAATTGTGGCAGGGCCACCAGAAAC
1 AGATAATTGTGGCAGAGCCACCA-AAAC
* * *
35687928 AGATATTTGTGGCAGGGCCACCAAAAAT
1 AGATAATTGTGGCAGAGCCACC-AAAAC
*
35687956 AGATATTTGTGGCAGAGCCACCAAAAC
1 AGATAATTGTGGCAGAGCCACCAAAAC
35687983 GTTTCCTCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
27 8 0.11
28 62 0.85
29 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
AGATAATTGTGGCAGAGCCACCAAAAC
Found at i:35687950 original size:56 final size:54
Alignment explanation
Indices: 35687873--35687982 Score: 139
Period size: 56 Copynumber: 2.0 Consensus size: 54
35687863 CTGCCAGAAT
* * *
35687873 AGATATTGTGACAGAGTCACCAAATACAGATAATTGTGGCAGGGCCACCAGAAAC
1 AGATATTGTGACAGAGCCACCAAAAACAGATAATTGTGGCAGAGCCACCA-AAAC
* * * *
35687928 AGATATTTGTGGCAGGGCCACCAAAAATAGATATTTGTGGCAGAGCCACCAAAAC
1 AGATA-TTGTGACAGAGCCACCAAAAACAGATAATTGTGGCAGAGCCACCAAAAC
35687983 GTTTCCTCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
55 9 0.19
56 38 0.81
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (54 bp):
AGATATTGTGACAGAGCCACCAAAAACAGATAATTGTGGCAGAGCCACCAAAAC
Found at i:35692280 original size:28 final size:28
Alignment explanation
Indices: 35692243--35692333 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
35692233 TTGTGACAGT
* *
35692243 CACCAAATACAGATAATTGTGGCA-AGGC
1 CACCAGATACAGATATTTGTGGCAGA-GC
35692271 CACCAGATACAGATATTTGTGGCAGAGC
1 CACCAGATACAGATATTTGTGGCAGAGC
* * *
35692299 CACCAGAAATAGATATTTGTGGTAGAGC
1 CACCAGATACAGATATTTGTGGCAGAGC
35692327 CACCAGA
1 CACCAGA
35692334 ACGTTTCCTC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 56 0.98
29 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (28 bp):
CACCAGATACAGATATTTGTGGCAGAGC
Found at i:35694381 original size:28 final size:27
Alignment explanation
Indices: 35694331--35694438 Score: 139
Period size: 27 Copynumber: 3.9 Consensus size: 27
35694321 GGCTGCTAGA
* *
35694331 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
35694358 ACAGATAATCGTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
35694385 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
35694413 -CAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAA--TGTGGCAGAGCCACCAG
35694439 GACCCTTCCT
Statistics
Matches: 73, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
26 1 0.01
27 39 0.53
28 33 0.45
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:35694411 original size:55 final size:54
Alignment explanation
Indices: 35694328--35694438 Score: 161
Period size: 55 Copynumber: 2.0 Consensus size: 54
35694318 CATGGCTGCT
*
35694328 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCACC
1 AGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCACC
* * *
35694382 AGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCACC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCACC
35694437 AG
1 AG
35694439 GACCCTTCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 17 0.33
55 34 0.67
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCACC
Found at i:35700885 original size:40 final size:40
Alignment explanation
Indices: 35700829--35701036 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
35700819 CAATTGAATG
* * *
35700829 ATATCCGGGTTAAGACCCAAAGGCAATTGTGCTAGT-GACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCG--TT
* *
35700870 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCGTT
* *
35700909 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCGTT
* *
35700949 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCGTT
* *
35700989 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCGTT
35701029 ATATCCGG
1 ATATCCGG
35701037 TTGTATTCCG
Statistics
Matches: 151, Mismatches: 11, Indels: 11
0.87 0.06 0.06
Matches are distributed among these distances:
39 7 0.05
40 141 0.93
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCGTT
Found at i:35707751 original size:40 final size:40
Alignment explanation
Indices: 35707632--35707837 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
35707622 CAATTGAATG
* * *
35707632 ATATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGT-GACTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCG--TT
* * *
35707672 -TATCCGGGCTAAGACCCG-AGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGTT
*
35707710 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGTT
*
35707750 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGTT
* * *
35707790 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGTT
35707830 ATATCCGG
1 ATATCCGG
35707838 TTGTATTCCG
Statistics
Matches: 150, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 43 0.29
40 105 0.70
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGTT
Found at i:35711643 original size:28 final size:27
Alignment explanation
Indices: 35711588--35711700 Score: 133
Period size: 27 Copynumber: 4.1 Consensus size: 27
35711578 ATCATGGCTG
* *
35711588 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
35711614 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
35711642 CCA-AAACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
35711669 CCAGAT-CAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAA--TGTGGCAGAGCCA
35711697 CCAG
1 CCAG
35711701 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
26 6 0.08
27 38 0.50
28 32 0.42
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:35711689 original size:55 final size:54
Alignment explanation
Indices: 35711592--35711699 Score: 155
Period size: 55 Copynumber: 2.0 Consensus size: 54
35711582 TGGCTGCCAG
*
35711592 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAA
1 AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
* * *
35711646 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTTGTGGCATAGCCACCA
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGATAA-TCGTGGCAGAGCCACCA
35711700 GGACGCTTCC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
54 15 0.31
55 33 0.69
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
Found at i:35725094 original size:12 final size:12
Alignment explanation
Indices: 35725077--35725103 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
35725067 ATAGGTTTGG
35725077 CACGGCCTAGCA
1 CACGGCCTAGCA
35725089 CACGGCCTAGCA
1 CACGGCCTAGCA
35725101 CAC
1 CAC
35725104 AAGTGTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.44, G:0.22, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:35726133 original size:21 final size:21
Alignment explanation
Indices: 35726107--35726149 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
35726097 TTTCCTTATT
*
35726107 GAGGGACACTGCGTATTAGTG
1 GAGGGACACTGCGTATCAGTG
35726128 GAGGGACACTGCGTATCAGTG
1 GAGGGACACTGCGTATCAGTG
35726149 G
1 G
35726150 TGGAACACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.16, G:0.40, T:0.21
Consensus pattern (21 bp):
GAGGGACACTGCGTATCAGTG
Found at i:35726157 original size:21 final size:21
Alignment explanation
Indices: 35726107--35726157 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
35726097 TTTCCTTATT
* *
35726107 GAGGGACACTGCGTATTAGTG
1 GAGGAACACTGCGTATCAGTG
*
35726128 GAGGGACACTGCGTATCAGTG
1 GAGGAACACTGCGTATCAGTG
*
35726149 GTGGAACAC
1 GAGGAACAC
35726158 ATTAGTATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.37, T:0.20
Consensus pattern (21 bp):
GAGGAACACTGCGTATCAGTG
Found at i:35729654 original size:38 final size:38
Alignment explanation
Indices: 35729591--35729710 Score: 120
Period size: 38 Copynumber: 3.1 Consensus size: 38
35729581 TATTGATGTG
* *
35729591 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTATGTGCTGGAATTA
* *
35729631 TATCCGGGTTAAATCTCGCAGGCT-TCGTGTTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTAT-GTGCTGG-AATTA
* *
35729669 TATCTGGGTTAAATCCCGCAGGCCTA-GTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGG-CTATGTGCTGGAATTA
35729707 TATC
1 TATC
35729711 TGAGTTTAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
37 2 0.03
38 48 0.72
39 9 0.13
40 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTATGTGCTGGAATTA
Found at i:35729711 original size:38 final size:38
Alignment explanation
Indices: 35729607--35729731 Score: 126
Period size: 38 Copynumber: 3.2 Consensus size: 38
35729597 GGCTTAAAGA
* * *
35729607 CCCGCAGG-CTATATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCCTA-GTGCTGGTATTATATCTGGGTTAAAT
* * * * *
35729645 CTCGCAGGCTTCGTGTTGGTAATATATCTGGGTTAAAT
1 CCCGCAGGCCTAGTGCTGGTATTATATCTGGGTTAAAT
*
35729683 CCCGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGT
1 CCCGCAGGCCTAGTGCTGGTATTATATCTG-GGTTAAA-T
*
35729723 CCCGTAGGC
1 CCCGCAGGC
35729732 TTCGTGATGG
Statistics
Matches: 69, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
38 53 0.77
39 7 0.10
40 9 0.13
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
CCCGCAGGCCTAGTGCTGGTATTATATCTGGGTTAAAT
Found at i:35748554 original size:30 final size:30
Alignment explanation
Indices: 35748518--35748618 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
35748508 GACAAGATTG
* * *
35748518 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
35748548 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
35748576 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
35748605 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
35748619 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:35748630 original size:29 final size:28
Alignment explanation
Indices: 35748547--35748622 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
35748537 AAAATTGTAC
* *
35748547 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
35748575 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
35748604 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
35748623 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:35756405 original size:30 final size:30
Alignment explanation
Indices: 35756369--35756469 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
35756359 GACAAGATTG
* * *
35756369 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
35756399 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
35756427 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
35756456 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
35756470 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:35756481 original size:29 final size:28
Alignment explanation
Indices: 35756398--35756473 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
35756388 AAAATTGTAC
* *
35756398 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
35756426 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
35756455 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
35756474 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:35761115 original size:43 final size:42
Alignment explanation
Indices: 35761022--35761258 Score: 189
Period size: 43 Copynumber: 5.7 Consensus size: 42
35761012 TGCAATATCT
* *
35761022 CAGATATGGTCTTACATGTAATCTC--AT--ATGCCAATAG-CC
1 CAGATATGGTCTTACACGAAATCTCATATCAATGCC-AT-GTCC
* *
35761061 CAGCTATGGTCTTACACGAAATCTCATAACAAATGCCATGTCC
1 CAGATATGGTCTTACACGAAATCTCATATC-AATGCCATGTCC
* * *
35761104 CAGATATGGTCTTACACGTAATATCATATCGATGCCAATAG-CC
1 CAGATATGGTCTTACACGAAATCTCATATCAATGCC-AT-GTCC
* * * *
35761147 CAGCTATGGTCTTACATGAAATCTCGTATCGATGCCATGTCC
1 CAGATATGGTCTTACACGAAATCTCATATCAATGCCATGTCC
* * * * * *
35761189 TAGACATGGTCTTACACAAAATATTATATCAAAGCCATGTCC
1 CAGATATGGTCTTACACGAAATCTCATATCAATGCCATGTCC
** * * *
35761231 CAGGCATGGTCTGACATGAAGTCTCATA
1 CAGATATGGTCTTACACGAAATCTCATA
35761259 ATAGTGCCGA
Statistics
Matches: 157, Mismatches: 32, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
39 22 0.14
41 2 0.01
42 62 0.39
43 65 0.41
44 6 0.04
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
CAGATATGGTCTTACACGAAATCTCATATCAATGCCATGTCC
Found at i:35761333 original size:48 final size:48
Alignment explanation
Indices: 35761276--35761392 Score: 112
Period size: 48 Copynumber: 2.4 Consensus size: 48
35761266 CGATGCCATG
*
35761276 TCCCGGATATGGTCTTATACGGGACCGCATA-TCGATGCCAATGTC-ATA
1 TCCCAGATATGGTCTTATACGGGACCGCATACT-GATGCCAATG-CAATA
* * * * * * **
35761324 TCCTAGATATGGCCTTACATGGGATCTCATACTGATGCTGATGCAATA
1 TCCCAGATATGGTCTTATACGGGACCGCATACTGATGCCAATGCAATA
*
35761372 TCCCAGATATGATCTTATACG
1 TCCCAGATATGGTCTTATACG
35761393 AGATCTCAAT
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
47 1 0.02
48 51 0.96
49 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (48 bp):
TCCCAGATATGGTCTTATACGGGACCGCATACTGATGCCAATGCAATA
Found at i:35761513 original size:24 final size:25
Alignment explanation
Indices: 35761481--35761530 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
35761471 TTTTGTCGAG
35761481 TCGTCATTGAGAC-TCATGGATCAA
1 TCGTCATTGAGACTTCATGGATCAA
35761505 TCGTCATTGAGACTTCATGGATCAA
1 TCGTCATTGAGACTTCATGGATCAA
35761530 T
1 T
35761531 TTCATAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (25 bp):
TCGTCATTGAGACTTCATGGATCAA
Found at i:35761541 original size:24 final size:24
Alignment explanation
Indices: 35761481--35761541 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
35761471 TTTTGTCGAG
**
35761481 TCGTCATTGAGACTCATGGATCAA
1 TCGTCATAAAGACTCATGGATCAA
**
35761505 TCGTCATTGAGACTTCATGGATCAA
1 TCGTCATAAAGAC-TCATGGATCAA
*
35761530 T-TTCATAAAGAC
1 TCGTCATAAAGAC
35761542 AATTACATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 21 0.64
25 12 0.36
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (24 bp):
TCGTCATAAAGACTCATGGATCAA
Found at i:35761556 original size:6 final size:6
Alignment explanation
Indices: 35761545--35761573 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
35761535 TAAAGACAAT
35761545 TACATA TACATA TACATA TACATA TACAT
1 TACATA TACATA TACATA TACATA TACAT
35761574 TTCATGCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (6 bp):
TACATA
Found at i:35767673 original size:46 final size:48
Alignment explanation
Indices: 35767606--35767702 Score: 144
Period size: 48 Copynumber: 2.1 Consensus size: 48
35767596 ACAGAATAGA
* *
35767606 AATGAGCCATGTAAGTCCATA-T-CAGATATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGAGACAGG
* *
35767652 AATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGAGACAGG
35767700 AAT
1 AAT
35767703 AATTCATGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 20 0.44
47 1 0.02
48 24 0.53
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (48 bp):
AATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGAGACAGG
Found at i:35770998 original size:39 final size:39
Alignment explanation
Indices: 35770955--35771052 Score: 169
Period size: 39 Copynumber: 2.5 Consensus size: 39
35770945 CCGGACATAT
* *
35770955 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
35770994 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
*
35771033 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
35771053 GTCTTTAAGC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
Found at i:35776809 original size:30 final size:31
Alignment explanation
Indices: 35776775--35776858 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 31
35776765 TCATGAATAA
*
35776775 ATGGTCGAAACCATCCCTTTTCATTAACT-G
1 ATGGTCGAAACCATCCCTTTTCATTAAATCG
** *
35776805 ATGGTCGTCACCGTCCCTTTTCA-TAAATCG
1 ATGGTCGAAACCATCCCTTTTCATTAAATCG
* *
35776835 ATAGTC-AAAGCCATCCTTTTTCAT
1 ATGGTCGAAA-CCATCCCTTTTCAT
35776859 ATTCAATGGT
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
29 5 0.12
30 37 0.88
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (31 bp):
ATGGTCGAAACCATCCCTTTTCATTAAATCG
Found at i:35796516 original size:19 final size:19
Alignment explanation
Indices: 35796492--35796531 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
35796482 TGTGTCATCA
*
35796492 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
35796511 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
35796530 TA
1 TA
35796532 CACATTCTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:35799109 original size:48 final size:49
Alignment explanation
Indices: 35799057--35799332 Score: 234
Period size: 48 Copynumber: 5.8 Consensus size: 49
35799047 TGGCTAGCAC
* *
35799057 ATCAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTA-CTTTCATAT
1 ATCAAAGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAT
* *
35799105 ATCAAGGCCGATGCCATGTCCCAGACAGGTCTTACAC-AGGCTCTCATCT
1 ATCAAAGCCGATGCCATGTCCCAGACAGGTCTTACACTA-GCTCTCATAT
*** * * * * *
35799154 ATCGGTGCCGATGCCATGTCCTAGACAAGTCTTACACT-G---ACAGAC
1 ATCAAAGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAT
* * *
35799199 AAC-AAGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATAT
1 ATCAAAGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCT-CATAT
* * * * *
35799247 CTCGAGGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTC--GT
1 ATCAAAGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAT
* * * *
35799293 CTCAATGTCGATG-CATGTCCCAGACATGTCTTACACTAGC
1 ATCAAAGCCGATGCCATGTCCCAGACAGGTCTTACACTAGC
35799333 ACACATATCA
Statistics
Matches: 186, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
44 29 0.16
45 5 0.03
46 38 0.20
47 1 0.01
48 66 0.35
49 47 0.25
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (49 bp):
ATCAAAGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAT
Found at i:35799257 original size:93 final size:92
Alignment explanation
Indices: 35799114--35799283 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 92
35799104 TATCAAGGCC
* *
35799114 GATGCCATGTCCCAGACAGGTCTTACACAGGCTCTCATCTATCGGTGCCGATGCCATGTCCTAGA
1 GATGCCATGTCCCAGACAGGTCTTACACAGGCTCTCATATATCGGTGCCGATG-CATGTCCCAGA
35799179 CAAGTCTTACACTGACAGACAACAAGCT
65 CAAGTCTTACACTGACAGACAACAAGCT
* *
35799207 GATGCCATGTCCCAGACAGGTCTTACACTA-GCT-TGTATATCTCGAG-GCCGATGCATGTCCCA
1 GATGCCATGTCCCAGACAGGTCTTACAC-AGGCTCT-CATATATCG-GTGCCGATGCATGTCCCA
*
35799269 GACATGTCTTACACT
63 GACAAGTCTTACACT
35799284 AGCTCTCGTC
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
92 23 0.33
93 44 0.64
94 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (92 bp):
GATGCCATGTCCCAGACAGGTCTTACACAGGCTCTCATATATCGGTGCCGATGCATGTCCCAGAC
AAGTCTTACACTGACAGACAACAAGCT
Found at i:35799272 original size:141 final size:142
Alignment explanation
Indices: 35799013--35799329 Score: 389
Period size: 141 Copynumber: 2.2 Consensus size: 142
35799003 ATGGGATAAG
* * * * *
35799013 ATGCCGACGCCATGTCCTAAACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGTCC
1 ATGCCGATGCCATGTCCTAGACA-AGTCTTACACTGACTAGCACAACAAAGTCGATGCCATGTCC
35799078 CAGACAGGTCTTACACTACTTTCATATATCAAGGCCGATGCCATGTCCCAGACAGGTCTTACAC-
65 CAGACAGGTCTTACACTACTTTCATATATCAAGGCCGATGCCATGTCCCAGACAGGTCTTACACT
*
35799142 AGGCTCTCATCTATCG
130 A-GCTCTCATC--TCA
*
35799158 GTGCCGATGCCATGTCCTAGACAAGTCTTACACTGAC-AG-ACAAC-AAG-CTGATGCCATGTCC
1 ATGCCGATGCCATGTCCTAGACAAGTCTTACACTGACTAGCACAACAAAGTC-GATGCCATGTCC
* * *
35799219 CAGACAGGTCTTACACTAGCTTGT-ATATCTCGAGGCCGATG-CATGTCCCAGACATGTCTTACA
65 CAGACAGGTCTTACACTA-CTT-TCATATATCAAGGCCGATGCCATGTCCCAGACAGGTCTTACA
*
35799282 CTAGCTCTCGTCTCA
128 CTAGCTCTCATCTCA
* * *
35799297 ATGTCGATG-CATGTCCCAGACATGTCTTACACT
1 ATGCCGATGCCATGTCCTAGACAAGTCTTACACT
35799330 AGCACACATA
Statistics
Matches: 153, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
138 22 0.14
139 9 0.06
140 1 0.01
141 63 0.41
142 23 0.15
143 3 0.02
144 12 0.08
145 20 0.13
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (142 bp):
ATGCCGATGCCATGTCCTAGACAAGTCTTACACTGACTAGCACAACAAAGTCGATGCCATGTCCC
AGACAGGTCTTACACTACTTTCATATATCAAGGCCGATGCCATGTCCCAGACAGGTCTTACACTA
GCTCTCATCTCA
Found at i:35808905 original size:29 final size:29
Alignment explanation
Indices: 35808872--35808945 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
35808862 CCTTCGAGCT
35808872 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
35808901 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
35808930 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
35808946 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:35808906 original size:58 final size:58
Alignment explanation
Indices: 35808813--35808945 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
35808803 ATACTCGATT
* * * * *
35808813 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
35808871 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
35808929 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
35808946 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:35816692 original size:25 final size:25
Alignment explanation
Indices: 35816663--35816775 Score: 133
Period size: 25 Copynumber: 4.6 Consensus size: 25
35816653 TTACCAATTC
*
35816663 CAGCTCTTATGAGCTTACCGATACT
1 CAGCTCGTATGAGCTTACCGATACT
35816688 CAGCTCGTATGAGCTTACCGATACT
1 CAGCTCGTATGAGCTTACCGATACT
* * *
35816713 CAGCTCGTATGAGCTTATCGTTATT
1 CAGCTCGTATGAGCTTACCGATACT
* *
35816738 CAGCTCAG-AGGAGCTTACC-ATTCAT
1 CAGCTC-GTATGAGCTTACCGATAC-T
35816763 -AGCTCGTATGAGC
1 CAGCTCGTATGAGC
35816776 ATACATGTAC
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
23 1 0.01
24 11 0.15
25 62 0.83
26 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATACT
Found at i:35825469 original size:28 final size:28
Alignment explanation
Indices: 35825429--35825498 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
35825419 CATGAGATTG
* *
35825429 GCACTAAGTGTGCGAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGACTATTA-A
35825457 GCACTAAGTGTGCGAGTTCGACTATTAA
1 GCACTAAGTGTGCGAGTTCGACTATTAA
35825485 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
35825499 GGCTTATTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATTAA
Found at i:35835685 original size:28 final size:28
Alignment explanation
Indices: 35835620--35835718 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
35835610 CATGAGATTG
* * *
35835620 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
35835649 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
35835677 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
35835705 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
35835719 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:35837316 original size:65 final size:65
Alignment explanation
Indices: 35837211--35837341 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
35837201 AGTCCCATGC
* *
35837211 ATCAGATAATAATAACATGGCATGCAGTAAATAGTGACAGTCAAACATGCATTCAGGTCAATCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
35837276 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
35837341 A
1 A
35837342 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:35837393 original size:26 final size:26
Alignment explanation
Indices: 35837344--35837394 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
35837334 CAACCTTAAC
* *
35837344 CCTAGGGGTATATCAGTAATTTTTCT
1 CCTAGGGGTAAATCAGTAAATTTTCT
35837370 CCTAGGGGTAAATCTA-TAAATTTTC
1 CCTAGGGGTAAATC-AGTAAATTTTC
35837395 CACCTATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAAATTTTCT
Found at i:35837400 original size:27 final size:26
Alignment explanation
Indices: 35837344--35837400 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
35837334 CAACCTTAAC
* * *
35837344 CCTAGGGGTATATCAGTAATTTTTCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
35837370 CCTAGGGGTAAATCTA-TAAATTTTCCA
1 CCTAGGGGTAAATC-AGT-AATTTTCCA
35837397 CCTA
1 CCTA
35837401 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:35837679 original size:20 final size:20
Alignment explanation
Indices: 35837647--35837685 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
35837637 ACTTATTGCC
35837647 TATTTTTTATTATTTATTAT
1 TATTTTTTATTATTTATTAT
35837667 TATTATTTT-TTATTTATTA
1 TATT-TTTTATTATTTATTA
35837686 ACCTGTATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (20 bp):
TATTTTTTATTATTTATTAT
Found at i:35838722 original size:42 final size:42
Alignment explanation
Indices: 35838675--35838760 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
35838665 AAAAAGGAAG
* *
35838675 AAAGAAAATAAAGGAAAATGAGAGGAAGAAGAAATCGGCACC
1 AAAGAAAATAAAGGAAAAAGAGAGGAAGAAGAAATCAGCACC
* *
35838717 AAAGAAAATGAAGTAAAAAGAGAGGAAGAAGAAATCAGCACC
1 AAAGAAAATAAAGGAAAAAGAGAGGAAGAAGAAATCAGCACC
35838759 AA
1 AA
35838761 GGAGAACGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.59, C:0.09, G:0.24, T:0.07
Consensus pattern (42 bp):
AAAGAAAATAAAGGAAAAAGAGAGGAAGAAGAAATCAGCACC
Found at i:35842286 original size:45 final size:45
Alignment explanation
Indices: 35842198--35842415 Score: 368
Period size: 45 Copynumber: 4.9 Consensus size: 45
35842188 CCGAATTCAT
* *
35842198 TCACCGGCATT-TCGCCTGCTAGGCTC-AAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
**
35842241 TCACCAACATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
35842286 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
* *
35842331 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
35842376 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
35842416 GTTCTGTACA
Statistics
Matches: 164, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
43 9 0.05
44 14 0.09
45 141 0.86
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
Found at i:35852530 original size:50 final size:50
Alignment explanation
Indices: 35852365--35852589 Score: 265
Period size: 49 Copynumber: 4.5 Consensus size: 50
35852355 CTGGTACGCA
* * *
35852365 TAGTAGCCTGCACATAGTACTACACATGCGA-CTAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACACG
*
35852414 TAGTAGCCTACACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACACG
* * ** * *
35852463 TTGTAGCCTGCACTTAGTACTACACACGTGACCTGACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACACG
* * * * * * *
35852513 TAGTAGCCTGCACTTAGTACTACACATGTGATCATAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAATTATCCGGTACACG
*
35852564 TAGTAGCCTGCACTTAGTATTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
35852590 TGCGACCTCA
Statistics
Matches: 149, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 74 0.50
50 41 0.28
51 34 0.23
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACACG
Found at i:35852535 original size:99 final size:100
Alignment explanation
Indices: 35852352--35852595 Score: 285
Period size: 99 Copynumber: 2.5 Consensus size: 100
35852342 TAGCCAAAGC
* * * * ** *
35852352 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACTAATTATCCGGTACACGTAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACTAACCATCCGATACACGTAG
35852417 TAGCCTACACTTAGTACTACACACGTGACCA-A-T
66 TAGCCTACACTTAGTACTACACACGTGACCATAGT
* * * * *
35852450 TATCCGGTACACGTTGTAGCCTGCACTTAGTACTACACACGTGACCTGACCATCTGATACACGTA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CTAACCATCCGATACACGTA
* * *
35852515 GTAGCCTGCACTTAGTACTACACATGTGATCATAGT
65 GTAGCCTACACTTAGTACTACACACGTGACCATAGT
* * * * *
35852551 TTTCGGGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGAC
35852596 CTCACAATAG
Statistics
Matches: 120, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
98 37 0.31
99 44 0.37
100 2 0.02
101 37 0.31
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACTAACCATCCGATACACGTAG
TAGCCTACACTTAGTACTACACACGTGACCATAGT
Found at i:35856140 original size:18 final size:18
Alignment explanation
Indices: 35856117--35856153 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
35856107 TTTGTGATCA
35856117 AAATTGAAAGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
*
35856135 AAATTGAAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
35856153 A
1 A
35856154 TAAGAATTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:35856142 original size:12 final size:12
Alignment explanation
Indices: 35856117--35856153 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
35856107 TTTGTGATCA
35856117 AAATTGAAAGTG
1 AAATTGAAAGTG
* *
35856129 AAAGTGAAATTG
1 AAATTGAAAGTG
35856141 AAATTGAAAGTG
1 AAATTGAAAGTG
35856153 A
1 A
35856154 TAAGAATTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (12 bp):
AAATTGAAAGTG
Done.