Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 119 of 410
Found at i:35856548 original size:19 final size:19
Alignment explanation
Indices: 35856513--35856559 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 19
35856503 AAGAAACTTG
35856513 AATGTGGAATATGATTTGAA
1 AATGT-GAATATGATTTGAA
35856533 AATGTGAAT-TGAATTTGAA
1 AATGTGAATATG-ATTTGAA
35856552 AATGTGAA
1 AATGTGAA
35856560 AAGAAAGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 2 0.08
19 19 0.73
20 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.34
Consensus pattern (19 bp):
AATGTGAATATGATTTGAA
Found at i:35862322 original size:9 final size:9
Alignment explanation
Indices: 35862299--35862346 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
35862289 CTATTTTAAG
*
35862299 TATAAGATA
1 TATAATATA
*
35862308 TTTAATATA
1 TATAATATA
35862317 TATAATATA
1 TATAATATA
*
35862326 TATATTATA
1 TATAATATA
35862335 -ATAATATA
1 TATAATATA
35862343 -ATAA
1 TATAA
35862347 AGCATAAAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
8 11 0.32
9 23 0.68
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (9 bp):
TATAATATA
Found at i:35862346 original size:11 final size:12
Alignment explanation
Indices: 35862310--35862346 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
35862300 ATAAGATATT
35862310 TAATATATATAA
1 TAATATATATAA
*
35862322 T-ATATATATTA
1 TAATATATATAA
35862333 TAATA-ATATAA
1 TAATATATATAA
35862344 TAA
1 TAA
35862347 AGCATAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 18 0.82
12 4 0.18
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
TAATATATATAA
Found at i:35864291 original size:17 final size:17
Alignment explanation
Indices: 35864269--35864325 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 17
35864259 AGATCTGCCC
35864269 ACCCCATGGCCATGGGA
1 ACCCCATGGCCATGGGA
* *
35864286 ACCCCACGGCC--CGG-
1 ACCCCATGGCCATGGGA
*
35864300 -CCCTATGGCCATGGGA
1 ACCCCATGGCCATGGGA
35864316 ACCCCATGGC
1 ACCCCATGGC
35864326 TTGGCCACAC
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
13 8 0.27
15 4 0.13
17 18 0.60
ACGTcount: A:0.19, C:0.42, G:0.28, T:0.11
Consensus pattern (17 bp):
ACCCCATGGCCATGGGA
Found at i:35866530 original size:55 final size:53
Alignment explanation
Indices: 35866393--35866539 Score: 197
Period size: 53 Copynumber: 2.7 Consensus size: 53
35866383 TTTTCCTTTT
* * * *
35866393 TGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTA
* *
35866446 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTA
*
35866499 TAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATG
1 T-G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATG
35866540 ATTTCCTTAC
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
52 2 0.02
53 45 0.55
54 1 0.01
55 34 0.41
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTA
Found at i:35866556 original size:55 final size:53
Alignment explanation
Indices: 35866405--35866585 Score: 195
Period size: 55 Copynumber: 3.4 Consensus size: 53
35866395 AACTTACCAT
* * *
35866405 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAGAACTCATCAA
* *
35866458 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACAT-GTATCC-TTGCCTTATAG-AACTCATCAA
* * * * * *
35866513 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCATATAGAAATTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-TATCCTTGCCTTATAGAACTCATCAA
*
35866567 TGCCATGCCTTGGCATGGT
1 TGCCATGCCTTGACATGGT
35866586 TTTTGTAACA
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 35 0.32
54 27 0.25
55 42 0.39
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGTATCCTTGCCTTATAGAACTCATCAA
Found at i:35868024 original size:47 final size:45
Alignment explanation
Indices: 35867837--35868093 Score: 168
Period size: 47 Copynumber: 5.5 Consensus size: 45
35867827 CAATGCCATA
* * * *
35867837 TCCCAGACATGGTCTTACACTGGCTCTAATATATGTGTGCTGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCACT-CT-TA-ATGTGCCGATGCATG
* *
35867886 TCCCAGACATGTCTTACACTAGCACAACTCTT-A---GCCGATGCGTG
1 TCCCAGACATGTCTTACACT-G-GC-ACTCTTAATGTGCCGATGCATG
* * * * *
35867930 TCTCAGACACGTCTTACACAGGCTATTTCTGTCGA-G-GCCGATGCATG
1 TCCCAGACATGTCTTACACTGGC-A-CTCT-T-AATGTGCCGATGCATG
* * *
35867977 TCCCATACATGTCTTACTCTGGCACTCATCT-CTGTGCCGATGCCATG
1 TCCCAGACATGTCTTACACTGGCACTC-T-TAATGTGCCGATG-CATG
* * *
35868024 TCCCAGACATGGTCTTACACTAGCTCTCTTAATGTGACCGAAGCATG
1 TCCCAGACAT-GTCTTACACTGGCACTCTTAATGTG-CCGATGCATG
35868071 TCCCAGACATGTCTTACACTGGC
1 TCCCAGACATGTCTTACACTGGC
35868094 GCACAAATCA
Statistics
Matches: 165, Mismatches: 28, Indels: 33
0.73 0.12 0.15
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 27 0.16
45 3 0.02
46 24 0.15
47 60 0.36
48 29 0.18
49 12 0.07
50 2 0.01
51 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
TCCCAGACATGTCTTACACTGGCACTCTTAATGTGCCGATGCATG
Found at i:35868072 original size:94 final size:90
Alignment explanation
Indices: 35867823--35868093 Score: 262
Period size: 94 Copynumber: 2.9 Consensus size: 90
35867813 ATGGGATATA
* * * * * *
35867823 TTGCCAATGCCATATCCCAGACATGGTCTTACACTGGCTCTAATATATGTGTGCTGATGCATGTC
1 TTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-TTA-ATGTG-ACCGATGCATGTC
*
35867888 CCAGACATGTCTTACACTAGCACAACTC
63 CCAGACATGTCTTACACTGGCACAACTC
* * * * *
35867916 TTAGCCGATG-CGTGTCTCAGACA-CGTCTTACAC-AGGCTATTT-CTGTCGAGGCCGATGCATG
1 TT-GCCGATGCCATGTCCCAGACATGGTCTTACACTA-GCTCTTTAATGT-GA--CCGATGCATG
* * *
35867977 TCCCATACATGTCTTACTCTGGCACTCATCTC
61 TCCCAGACATGTCTTACACTGGCA--CAACTC
*
35868009 TGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTAATGTGACCGAAGCATGTCC
1 T-TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-TTAATGTGACCGATGCATGTCC
35868074 CAGACATGTCTTACACTGGC
64 CAGACATGTCTTACACTGGC
35868094 GCACAAATCA
Statistics
Matches: 142, Mismatches: 23, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
89 3 0.02
90 1 0.01
91 31 0.22
92 13 0.09
93 25 0.18
94 48 0.34
95 13 0.09
96 5 0.04
97 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (90 bp):
TTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTTAATGTGACCGATGCATGTCCCA
GACATGTCTTACACTGGCACAACTC
Found at i:35869386 original size:47 final size:47
Alignment explanation
Indices: 35869316--35869435 Score: 186
Period size: 47 Copynumber: 2.6 Consensus size: 47
35869306 GGTTGTTACA
* *
35869316 GTCTTACATGATATCCTTATCTTAGTAAATGCCATGTTCCAAACATG
1 GTCTTACATGGTATCCTTGTCTTAGTAAATGCCATGTTCCAAACATG
** **
35869363 GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCTGAACATG
1 GTCTTACATGGTATCCTTGTCTTAGTAAATGCCATGTTCCAAACATG
35869410 GTCTTACATGGTATCCTTGTCTTAGT
1 GTCTTACATGGTATCCTTGTCTTAGT
35869436 TCCAATGCCA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (47 bp):
GTCTTACATGGTATCCTTGTCTTAGTAAATGCCATGTTCCAAACATG
Found at i:35869565 original size:90 final size:94
Alignment explanation
Indices: 35869358--35869567 Score: 202
Period size: 95 Copynumber: 2.3 Consensus size: 94
35869348 CATGTTCCAA
* * *
35869358 ACATGGTCTTACATGGTATCCTT-GTCTTACCAAATGCCATGTTCTGAACATGGTCTTACATGGT
1 ACATGGTCTTACATGGTATCCTTAATCATACCAAATGCCATGTTCTGAACATGGTCTTACACGGT
*
35869422 ATCCTTGTCTTAGTTCCAATGCCACATATTG
66 ATCCTTGCCTTA--TCCAATGCCACATATTG
** * * * *
35869453 ATGTGGCCTTACATAG-ATTCCTTAATCAATGCC-GATGCCATG-TCTTG-ACATGGTCTTACAC
1 ACATGGTCTTACATGGTA-TCCTTAATC-ATACCAAATGCCATGTTC-TGAACATGGTCTTACAC
** *
35869514 GG-ATCCTTGCCTTA-CCAAT-CCATGTCTTG
63 GGTATCCTTGCCTTATCCAATGCCACATATTG
35869543 ACATGGTCTTACATGGTATCCTTAA
1 ACATGGTCTTACATGGTATCCTTAA
35869568 CCGTCAATTC
Statistics
Matches: 93, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
90 26 0.28
91 6 0.06
94 12 0.13
95 34 0.37
96 12 0.13
97 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (94 bp):
ACATGGTCTTACATGGTATCCTTAATCATACCAAATGCCATGTTCTGAACATGGTCTTACACGGT
ATCCTTGCCTTATCCAATGCCACATATTG
Found at i:35872633 original size:47 final size:47
Alignment explanation
Indices: 35872561--35872910 Score: 502
Period size: 47 Copynumber: 7.3 Consensus size: 47
35872551 CCCTTCGGGA
* * * * * * *
35872561 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
35872608 CCTATCACATATATACACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
35872655 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35872702 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35872751 CTCATCACATGTATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35872800 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
35872849 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35872896 CTTATCACATATATA
1 CTTATCACATATATA
35872911 TATCTCATAC
Statistics
Matches: 276, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
47 146 0.53
49 126 0.46
51 4 0.01
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:35872735 original size:49 final size:49
Alignment explanation
Indices: 35872561--35872910 Score: 518
Period size: 49 Copynumber: 7.3 Consensus size: 49
35872551 CCCTTCGGGA
* * * * * * *
35872561 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
35872608 CCTATCACATATAT--ACACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
35872655 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
35872702 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35872751 CTCATCACATGTATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35872800 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
35872849 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
35872896 CTTATCACATATATA
1 CTTATCACATATATA
35872911 TATCTCATAC
Statistics
Matches: 280, Mismatches: 17, Indels: 12
0.91 0.06 0.04
Matches are distributed among these distances:
47 135 0.48
48 4 0.01
49 141 0.50
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:35877512 original size:29 final size:29
Alignment explanation
Indices: 35877488--35877581 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
35877478 ACGCACACCC
*
35877488 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
35877517 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
35877546 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
35877575 AGTGCCA
1 AGTGCCA
35877582 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:35883726 original size:15 final size:15
Alignment explanation
Indices: 35883687--35883765 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
35883677 GTATCTTGGG
*
35883687 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
35883702 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
35883717 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
35883731 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
35883746 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
35883760 TTTCTT
1 TTTCTT
35883766 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:35883750 original size:29 final size:29
Alignment explanation
Indices: 35883678--35883764 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
35883668 CATAGTATCG
* * * *
35883678 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
35883708 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
35883737 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
35883765 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:35886183 original size:46 final size:46
Alignment explanation
Indices: 35886133--35886308 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
35886123 GATGGTTGCA
35886133 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
35886179 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
35886224 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
35886272 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35886309 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:35886289 original size:93 final size:93
Alignment explanation
Indices: 35886130--35886300 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
35886120 TAGGATGGTT
* *
35886130 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
35886195 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
35886223 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
35886288 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
35886301 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:35887908 original size:39 final size:39
Alignment explanation
Indices: 35887864--35888067 Score: 300
Period size: 39 Copynumber: 5.2 Consensus size: 39
35887854 ATATATGGTG
35887864 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
*
35887903 ATTATATCCGGACTTAAGGTCCGTAGGCTATACGCGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
35887942 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
*
35887981 ATTATATCCAGACTTAAGGTCCGTAGGCTATATGCGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
* * * ** * ** * *
35888020 ATCATATTCGAACTTCGGGTTCGCCGGCTATGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
35888059 ATTATATCC
1 ATTATATCC
35888068 AGGCTAATAG
Statistics
Matches: 149, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 149 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (39 bp):
ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
Found at i:35892339 original size:34 final size:34
Alignment explanation
Indices: 35892293--35892359 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
35892283 GTTGCATTAC
*
35892293 TGATACTATTACTA-TAATGGGCTAAGGCCCACAT
1 TGATACTATTACTACT-ATGAGCTAAGGCCCACAT
*
35892327 TGATACTGTTACTACTATGAGCTAAGGCCCACA
1 TGATACTATTACTACTATGAGCTAAGGCCCACA
35892360 CAAATACTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 29 0.97
35 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (34 bp):
TGATACTATTACTACTATGAGCTAAGGCCCACAT
Found at i:35892367 original size:34 final size:34
Alignment explanation
Indices: 35892295--35892368 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
35892285 TGCATTACTG
* ***
35892295 ATACTATTACTATAATGGGCTAAGGCCCACATTG
1 ATACTATTACTATAATGAGCTAAGGCCCACACAA
*
35892329 ATACTGTTACTACT-ATGAGCTAAGGCCCACACAA
1 ATACTATTACTA-TAATGAGCTAAGGCCCACACAA
35892363 ATACTA
1 ATACTA
35892369 GACTGCCACT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
34 32 0.97
35 1 0.03
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (34 bp):
ATACTATTACTATAATGAGCTAAGGCCCACACAA
Found at i:35895773 original size:39 final size:39
Alignment explanation
Indices: 35895729--35895919 Score: 292
Period size: 39 Copynumber: 4.9 Consensus size: 39
35895719 TTCGGGTTTA
*
35895729 AAGGTCCGCAGGCTATGTGCTGAAATTATATCCGGACTT
1 AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTT
*
35895768 GAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTT
1 AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTT
**
35895807 AAGGTCAACAGGCTATGTGCTGGAATTATATCCGGACTT
1 AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTT
* *
35895846 CAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTT
1 AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTT
* * * *
35895885 AAGGTCCGTAGGCTACGTGCTGGAAATATGTCCGG
1 AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGG
35895920 GCTAAATTCC
Statistics
Matches: 137, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 137 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTT
Found at i:35895946 original size:78 final size:78
Alignment explanation
Indices: 35895737--35895953 Score: 224
Period size: 78 Copynumber: 2.8 Consensus size: 78
35895727 TAAAGGTCCG
* * * * *
35895737 CAGGCTATGTGCT-GAAATTATATCCGGACTTGAGGTCCGCAGGCTATGTGCTGGAATTATATCC
1 CAGGCTACGTGCTGGAAA-TATATCCGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATAACC
35895801 GGACTTAAGGTCAA
65 GGACTTAAGGTCAA
* * * * *
35895815 CAGGCTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTATAACCG
1 CAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATAACCG
**
35895880 GACTTAAGGTCCG
66 GACTTAAGGTCAA
* * * * * *
35895893 TAGGCTACGTGCTGGAAATATGTCCGGGC-TAAATTCCCGCGGGCT-TCGAGCTGGTATTATA
1 CAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGGCTAT-GAGCTGGAATTATA
35895954 CTGGGTTTAA
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
77 4 0.03
78 113 0.94
79 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (78 bp):
CAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATAACCG
GACTTAAGGTCAA
Found at i:35901436 original size:40 final size:40
Alignment explanation
Indices: 35901387--35901594 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
35901377 TCTTCGGAAT
* *
35901387 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
35901426 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
35901466 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* *
35901506 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
35901546 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
35901586 TTAGCCCGG
1 TTAGCCCGG
35901595 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 136 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:35909536 original size:40 final size:40
Alignment explanation
Indices: 35909487--35909694 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
35909477 TCTTCGGAAT
* *
35909487 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
35909526 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
35909566 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
35909606 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
35909646 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
35909686 TTAGCCCGG
1 TTAGCCCGG
35909695 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 136 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:35911575 original size:46 final size:46
Alignment explanation
Indices: 35911525--35911700 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
35911515 TGGTTGAGCA
35911525 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
35911571 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
35911616 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
35911664 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35911701 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:35911681 original size:93 final size:93
Alignment explanation
Indices: 35911522--35911693 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
35911512 GGATGGTTGA
* *
35911522 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
35911587 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
35911615 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
35911680 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
35911694 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:35915871 original size:93 final size:93
Alignment explanation
Indices: 35915759--35915930 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
35915749 GCCCATAAGT
* *
35915759 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
35915824 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
35915852 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
35915917 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
35915931 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:35915926 original size:46 final size:46
Alignment explanation
Indices: 35915751--35915926 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
35915741 TGTAACCCGC
* * *
35915751 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
35915797 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
35915847 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
35915890 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
35915927 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:35918353 original size:30 final size:30
Alignment explanation
Indices: 35918309--35918397 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
35918299 CAAAGATAAC
35918309 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
35918338 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
35918368 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
35918398 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:35918357 original size:15 final size:15
Alignment explanation
Indices: 35918309--35918388 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
35918299 CAAAGATAAC
*
35918309 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
35918323 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
35918338 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
35918353 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
35918368 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
35918383 AAGAAA
1 AAGAAA
35918389 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:35918397 original size:15 final size:15
Alignment explanation
Indices: 35918320--35918397 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
35918310 AGAAAACCGA
35918320 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
35918335 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
35918349 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
35918364 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
35918380 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
35918395 ATA
1 ATA
35918398 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:35921463 original size:93 final size:93
Alignment explanation
Indices: 35921351--35921522 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
35921341 GCCCATAAGT
* *
35921351 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
35921416 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
35921444 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
35921509 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
35921523 AAATATCCAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:35921518 original size:46 final size:46
Alignment explanation
Indices: 35921343--35921518 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
35921333 TGTAACCCGC
* * *
35921343 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
35921389 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
35921439 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
35921482 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
35921519 TGCCAAATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:35927513 original size:46 final size:46
Alignment explanation
Indices: 35927463--35927638 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
35927453 TGGTTGAGCA
35927463 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
35927509 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
35927554 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
35927602 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35927639 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:35927619 original size:93 final size:93
Alignment explanation
Indices: 35927460--35927631 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
35927450 GGATGGTTGA
* *
35927460 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
35927525 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
35927553 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
35927618 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
35927632 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:35931360 original size:14 final size:14
Alignment explanation
Indices: 35931341--35931478 Score: 91
Period size: 14 Copynumber: 9.9 Consensus size: 14
35931331 TTCATACATT
35931341 CAGATTTATAGATG
1 CAGATTTATAGATG
*
35931355 CAGATTTATAGATT
1 CAGATTTATAGATG
* *
35931369 TAGATTTATAAATG
1 CAGATTTATAGATG
**
35931383 TGGATTTATAGATG
1 CAGATTTATAGATG
* * *
35931397 -TGAATTAATAGATA
1 CAG-ATTTATAGATG
*
35931411 CAGATTCATAGATG
1 CAGATTTATAGATG
* * *
35931425 CAAATTTACAAATG
1 CAGATTTATAGATG
* *
35931439 CAGATTCATACATG
1 CAGATTTATAGATG
** *
35931453 TGGATTCATAGATG
1 CAGATTTATAGATG
*
35931467 C-GATTCATAGAT
1 CAGATTTATAGAT
35931479 AACCCGTAGA
Statistics
Matches: 98, Mismatches: 24, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
13 12 0.12
14 85 0.87
15 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (14 bp):
CAGATTTATAGATG
Found at i:35931467 original size:28 final size:28
Alignment explanation
Indices: 35931301--35931478 Score: 128
Period size: 28 Copynumber: 6.4 Consensus size: 28
35931291 TGGAAATTAG
*** *
35931301 GATTCATAGATGTAGACACATAGATACA
1 GATTCATAGATGTAGATTTATAGATGCA
* *
35931329 AATTCATACAT-TCAGATTTATAGATGCA
1 GATTCATAGATGT-AGATTTATAGATGCA
* * * **
35931357 GATTTATAGATTTAGATTTATAAATGTG
1 GATTCATAGATGTAGATTTATAGATGCA
* * *
35931385 GATTTATAGATGT-GAATTAATAGATACA
1 GATTCATAGATGTAG-ATTTATAGATGCA
* * * *
35931413 GATTCATAGATGCAAATTTACAAATGCA
1 GATTCATAGATGTAGATTTATAGATGCA
* * *
35931441 GATTCATACATGTGGATTCATAGATGC-
1 GATTCATAGATGTAGATTTATAGATGCA
35931468 GATTCATAGAT
1 GATTCATAGAT
35931479 AACCCGTAGA
Statistics
Matches: 113, Mismatches: 33, Indels: 9
0.73 0.21 0.06
Matches are distributed among these distances:
27 12 0.11
28 100 0.88
29 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (28 bp):
GATTCATAGATGTAGATTTATAGATGCA
Found at i:35933186 original size:29 final size:29
Alignment explanation
Indices: 35933151--35933224 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
35933141 GTTGTGAGAT
* *
35933151 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
35933180 TGGCACTAAGTGTGAGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
35933209 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
35933225 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:35940336 original size:29 final size:29
Alignment explanation
Indices: 35940301--35940373 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
35940291 GTTGTGAGAT
* *
35940301 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
35940330 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
35940359 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
35940374 ATGGTTGATT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:35941493 original size:13 final size:13
Alignment explanation
Indices: 35941475--35941510 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
35941465 ATTGTTGTTT
35941475 TGGCATATAGGTC
1 TGGCATATAGGTC
35941488 TGGCATATAGGTC
1 TGGCATATAGGTC
* *
35941501 GGGCACATAG
1 TGGCATATAG
35941511 CAAATGTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (13 bp):
TGGCATATAGGTC
Found at i:35943093 original size:31 final size:31
Alignment explanation
Indices: 35943052--35943115 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
35943042 CCTTTTCATA
*
35943052 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
35943083 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
35943114 TT
1 TT
35943116 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:35943386 original size:23 final size:24
Alignment explanation
Indices: 35943307--35943448 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
35943297 GCTTTATCAT
* *
35943307 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
35943332 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
35943356 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
35943379 ATAACTGGGGCATAAG-CCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
35943402 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
35943426 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
35943449 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 6 0.06
23 32 0.29
24 59 0.54
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:35943523 original size:20 final size:20
Alignment explanation
Indices: 35943498--35943558 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
35943488 TTATGATTAC
35943498 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
35943518 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
35943538 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
35943558 A
1 A
35943559 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:35943633 original size:25 final size:25
Alignment explanation
Indices: 35943601--35943648 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
35943591 ATACATAAAC
* * *
35943601 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
35943626 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
35943649 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:35945432 original size:27 final size:27
Alignment explanation
Indices: 35944889--35945421 Score: 612
Period size: 27 Copynumber: 19.8 Consensus size: 27
35944879 GGGTATTTTA
* * *
35944889 GTAATTTTGTAAATCGAGGGT-AAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
35944915 GTAATT-TGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
35944941 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
35944968 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
35944995 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
35945022 ATAATTCTGTAAATCGAGGGTAAAACC
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
35945049 ATAATTATGTAAATCTG-GGGTAAAATG
1 GTAATTCTATAAATC-GAGGGTAAAACG
* * *
35945076 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
**
35945103 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
35945130 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
*
35945157 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
35945184 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
35945211 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
35945238 GTAATTCTATATATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
35945265 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
35945292 ATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
* **
35945319 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
35945346 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
* *
35945373 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
35945400 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
35945422 CTTTGGTAAT
Statistics
Matches: 448, Mismatches: 47, Indels: 23
0.86 0.09 0.04
Matches are distributed among these distances:
25 13 0.03
26 20 0.04
27 410 0.92
28 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:35945443 original size:27 final size:27
Alignment explanation
Indices: 35945372--35945648 Score: 249
Period size: 27 Copynumber: 10.3 Consensus size: 27
35945362 AGGGTAAAAC
****
35945372 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
35945399 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
35945426 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
35945453 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
35945480 AGTAATTTCACAAAT-TAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
*
35945506 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
35945533 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
35945560 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
35945587 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
35945614 AGTAATTTTACAAAGC-AGGATATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
35945640 GGTAATTTT
1 GGTAATTTT
35945649 GTAAACCAAA
Statistics
Matches: 216, Mismatches: 31, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
26 40 0.19
27 174 0.81
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:35945645 original size:80 final size:80
Alignment explanation
Indices: 35945373--35945648 Score: 263
Period size: 80 Copynumber: 3.4 Consensus size: 80
35945363 GGGTAAAACG
* **** * * * *
35945373 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACA
1 GTAATTTTACAAAGCGAGGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTTGGTAATTTTACA
** * *
35945438 AGTCGAGGGTATTTCA
65 AACCAAGGGTATTTTA
* * ** * *
35945454 ATAATTTTAC-AGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAAG-CGAGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACA
* *
35945518 AACTAGGGGTATTTT-
65 AACCAAGGGTATTTTA
*
35945533 GATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTA
1 G-TAATTTTACAAAGCGA-GGGTATTTTGGTAATTTTACAAACTA-GGGTATTTTGGTAATTTTA
*
35945597 TAAACCAAGGGTATTTTA
63 CAAACCAAGGGTATTTTA
*
35945615 GTAATTTTACAAAGC-AGGATATTTTGGTAATTTT
1 GTAATTTTACAAAGCGAGGGTATTTTGGTAATTTT
35945649 GTAAACCAAA
Statistics
Matches: 158, Mismatches: 30, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
79 2 0.01
80 79 0.50
81 75 0.47
82 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
GTAATTTTACAAAGCGAGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAA
ACCAAGGGTATTTTA
Found at i:35945663 original size:26 final size:26
Alignment explanation
Indices: 35945498--35945665 Score: 167
Period size: 27 Copynumber: 6.3 Consensus size: 26
35945488 CACAAATTAG
* *
35945498 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
35945525 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
35945552 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
35945579 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* *
35945605 GGGTATTTTAGTAATTTTACAAAGC-A
1 -GGTATTTTGGTAATTTTACAAACCAA
**
35945631 GGATATTTTGGTAATTTTGTAAACCAA
1 GG-TATTTTGGTAATTTTACAAACCAA
*
35945658 AGTATTTT
1 GGTATTTT
35945666 AAACATGGAT
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
25 2 0.02
26 25 0.20
27 98 0.78
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:35946679 original size:31 final size:31
Alignment explanation
Indices: 35946644--35946705 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
35946634 GGTGTTACAT
35946644 ATTAAGCATAGAGAAAGGGAGAGTTTTTTTC
1 ATTAAGCATAGAGAAAGGGAGAGTTTTTTTC
35946675 ATTAAGCATAGAGAAAGGGAGAGTTTTTTTC
1 ATTAAGCATAGAGAAAGGGAGAGTTTTTTTC
35946706 TTTCTTTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (31 bp):
ATTAAGCATAGAGAAAGGGAGAGTTTTTTTC
Found at i:35947554 original size:27 final size:27
Alignment explanation
Indices: 35947521--35947576 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
35947511 TCATGAAAAG
*
35947521 AAGCCTTTGTGGCGAATCACAAAAGAA
1 AAGCCTTTCTGGCGAATCACAAAAGAA
**
35947548 AAGCCTTTCTGGCGAATCATGAAAGAA
1 AAGCCTTTCTGGCGAATCACAAAAGAA
35947575 AA
1 AA
35947577 AACTTTTACG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.20
Consensus pattern (27 bp):
AAGCCTTTCTGGCGAATCACAAAAGAA
Found at i:35947582 original size:27 final size:26
Alignment explanation
Indices: 35947525--35947604 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 26
35947515 GAAAAGAAGC
** **
35947525 CTTTGTGGCGAATCACAAAAGAAAAGC
1 CTTT-TGGCGAATCATGAAAGAAAAAA
35947552 CTTTCTGGCGAATCATGAAAGAAAAAA
1 CTTT-TGGCGAATCATGAAAGAAAAAA
* *
35947579 CTTTTACGGCAAATCATGCAAGAAAA
1 CTTTT--GGCGAATCATGAAAGAAAA
35947605 GCCTCTATAG
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 26 0.59
28 17 0.39
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.21
Consensus pattern (26 bp):
CTTTTGGCGAATCATGAAAGAAAAAA
Found at i:35948811 original size:28 final size:28
Alignment explanation
Indices: 35948779--35948872 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
35948769 ACGGTGCATG
*
35948779 CAGTAACAGTCTGGGCCTGAGCCCTATT
1 CAGTAACAGTCTGGGCCTGAGCCCTATA
* *
35948807 CAGTATCAGTACAGTCTGGGCCTTAGCTCTATA
1 CAG--T-A--ACAGTCTGGGCCTGAGCCCTATA
* * * *
35948840 CAGTAACAGTGTGGGCCTAAGCACAATA
1 CAGTAACAGTCTGGGCCTGAGCCCTATA
35948868 CAGTA
1 CAGTA
35948873 TCAATATAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
28 27 0.50
30 2 0.04
31 2 0.04
33 23 0.43
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTGAGCCCTATA
Found at i:35948822 original size:33 final size:34
Alignment explanation
Indices: 35948779--35948849 Score: 99
Period size: 33 Copynumber: 2.1 Consensus size: 34
35948769 ACGGTGCATG
* *
35948779 CAGTAACAGTCTGGGCCTGAGCCCTATTCAGTAT
1 CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
* *
35948813 CAGT-ACAGTCTGGGCCTTAGCTCTATACAGTAA
1 CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
35948846 CAGT
1 CAGT
35948850 GTGGGCCTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 29 0.88
34 4 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
Found at i:35950182 original size:37 final size:37
Alignment explanation
Indices: 35950128--35950217 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
35950118 CCAACTAGAC
*
35950128 ATGT-ATGTTCGGCCACATGAATGAGTATATGAGTTG
1 ATGTGATGTTCGGCCACATGAATGAGTATATGACTTG
*
35950164 ATGTGATGTTCAGCCACATGAATGAGTATATGACTTG
1 ATGTGATGTTCGGCCACATGAATGAGTATATGACTTG
35950201 ATGTGTATGTTCGGCCA
1 ATGTG-ATGTTCGGCCA
35950218 TAGGTAGCCT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
36 4 0.08
37 35 0.71
38 10 0.20
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (37 bp):
ATGTGATGTTCGGCCACATGAATGAGTATATGACTTG
Found at i:35953809 original size:25 final size:25
Alignment explanation
Indices: 35953781--35953829 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
35953771 AGCTATGTTT
35953781 TGATTCACAGCTCGTGTAAGCATAC
1 TGATTCACAGCTCGTGTAAGCATAC
*
35953806 TGATTCACAGCTCGTGTGAGCATA
1 TGATTCACAGCTCGTGTAAGCATA
35953830 TATGTACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
TGATTCACAGCTCGTGTAAGCATAC
Found at i:35957688 original size:24 final size:24
Alignment explanation
Indices: 35957656--35957703 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
35957646 GCAATTAATG
35957656 TTAGTTCGGAAAATAAAGTTTACA
1 TTAGTTCGGAAAATAAAGTTTACA
35957680 TTAGTTCGGAAAATAAAGTTTACA
1 TTAGTTCGGAAAATAAAGTTTACA
35957704 CAGTGGTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (24 bp):
TTAGTTCGGAAAATAAAGTTTACA
Found at i:35958892 original size:24 final size:24
Alignment explanation
Indices: 35958840--35959005 Score: 203
Period size: 24 Copynumber: 7.0 Consensus size: 24
35958830 GCTTTATCAT
*
35958840 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
35958865 ATAACTGGGGAAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
35958889 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
35958912 ATAACTGTGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
35958936 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
35958960 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
35958983 ATAACTAGGGCACAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
35959006 TCACTTCCTC
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 40 0.33
24 71 0.58
25 12 0.10
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:35958916 original size:47 final size:48
Alignment explanation
Indices: 35958839--35959005 Score: 205
Period size: 47 Copynumber: 3.5 Consensus size: 48
35958829 TGCTTTATCA
* * *
35958839 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGAAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
* *
35958888 TATAACTGGGGCATAAGCCC-TTTAATAACTGTGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
35958935 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
35958982 AATAACTAGGGCACAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
35959006 TCACTTCCTC
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
47 66 0.63
48 25 0.24
49 13 0.12
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:35958940 original size:71 final size:71
Alignment explanation
Indices: 35958854--35959005 Score: 225
Period size: 71 Copynumber: 2.1 Consensus size: 71
35958844 CTGGAGGCCT
*
35958854 AGCCTCTTTTAATAACTGGGGAAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACT-
1 AGCC-CTTTTAATAACTGGGGAAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTA
**
35958918 GTGGCGTA
65 G-GGCACA
* * *
35958926 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTAG
1 AGCCCTTTTAATAACTGGGGAAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTAG
35958991 GGCACA
66 GGCACA
35958997 AGCCCTTTT
1 AGCCCTTTT
35959006 TCACTTCCTC
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 68 0.93
72 5 0.07
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGAAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTAG
GGCACA
Found at i:35959078 original size:9 final size:9
Alignment explanation
Indices: 35959064--35959140 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
35959054 ATCTCGTGTG
35959064 CATATCATA
1 CATATCATA
*
35959073 CATATCATGTG
1 CATATCA--TA
35959084 CATATCATA
1 CATATCATA
* *
35959093 CATGTCATGTG
1 CATATCA--TA
35959104 CATATCATA
1 CATATCATA
*
35959113 CATATCATGTG
1 CATATCA--TA
35959124 CATATCATA
1 CATATCATA
35959133 CATATCAT
1 CATATCAT
35959141 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:35959083 original size:20 final size:20
Alignment explanation
Indices: 35959060--35959142 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
35959050 GAACATCTCG
35959060 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
35959080 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
35959100 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
35959120 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
35959140 TGT
1 TGT
35959143 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:35959089 original size:11 final size:11
Alignment explanation
Indices: 35959060--35959131 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
35959050 GAACATCTCG
35959060 TGTGCATATCA
1 TGTGCATATCA
*
35959071 --TACATATCA
1 TGTGCATATCA
35959080 TGTGCATATCA
1 TGTGCATATCA
* *
35959091 --TACATGTCA
1 TGTGCATATCA
35959100 TGTGCATATCA
1 TGTGCATATCA
*
35959111 --TACATATCA
1 TGTGCATATCA
35959120 TGTGCATATCA
1 TGTGCATATCA
35959131 T
1 T
35959132 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:35959792 original size:156 final size:156
Alignment explanation
Indices: 35959508--35959821 Score: 565
Period size: 156 Copynumber: 2.0 Consensus size: 156
35959498 CTATTGGGCC
* *
35959508 CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGCTGAAACCATGTCCTTACTGTTTCCAT
1 CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGCCGAAACCACGTCCTTACTGTTTCCAT
*
35959573 TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAGTGAGCGTTCGCTTGCTCAGAAGTCCTC
66 TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAGTGAGCGTTCGCTTGCTCACAAGTCCTC
*
35959638 AAAATGCTAGAATTTCGGCATTTCGG
131 AAAATGCCAGAATTTCGGCATTTCGG
*
35959664 CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGCCGAAATCACGTCCTTACTGTTTCCAT
1 CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGCCGAAACCACGTCCTTACTGTTTCCAT
35959729 TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAGTGAGCGTTCGCTTGCTCACAAGTCCTC
66 TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAGTGAGCGTTCGCTTGCTCACAAGTCCTC
* *
35959794 GAAATGCCAGAATTTCGGCATTTTGG
131 AAAATGCCAGAATTTCGGCATTTCGG
35959820 CT
1 CT
35959822 TTTCGGCATT
Statistics
Matches: 151, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
156 151 1.00
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (156 bp):
CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGCCGAAACCACGTCCTTACTGTTTCCAT
TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAGTGAGCGTTCGCTTGCTCACAAGTCCTC
AAAATGCCAGAATTTCGGCATTTCGG
Found at i:35960652 original size:27 final size:27
Alignment explanation
Indices: 35960623--35960908 Score: 342
Period size: 27 Copynumber: 10.6 Consensus size: 27
35960613 GGGTATTTTA
* * *
35960623 GTAATTTTGTAAATCGAAGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
35960650 GTAATTCTGTGAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
35960677 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
35960704 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
35960731 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
35960758 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
35960785 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
35960812 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
35960839 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
35960866 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
35960893 ATAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
35960909 GGAGTACTTT
Statistics
Matches: 225, Mismatches: 30, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.00
27 222 0.99
28 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:35963910 original size:24 final size:24
Alignment explanation
Indices: 35963858--35964023 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
35963848 GCTTTATCAT
*
35963858 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
35963883 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
35963907 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
35963930 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
35963954 ACAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
35963978 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
35964001 ATAACTGGGGCACAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
35964024 TCACTTCCTC
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
23 42 0.33
24 72 0.57
25 12 0.10
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:35963934 original size:47 final size:48
Alignment explanation
Indices: 35963857--35964023 Score: 223
Period size: 47 Copynumber: 3.5 Consensus size: 48
35963847 TGCTTTATCA
* *
35963857 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
35963906 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
35963953 GACAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
35964000 AATAACTGGGGCACAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
35964024 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 67 0.63
48 26 0.25
49 13 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:35963960 original size:71 final size:71
Alignment explanation
Indices: 35963858--35964023 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
35963848 GCTTTATCAT
* * *
35963858 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAACAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
35963922 GCCCTTTA
64 GCCCTTTA
* * *
35963930 ATAACTGGGGCGTAAGCCCTTTTGACAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
35963995 CCTTTA
66 CCTTTA
*
35964001 ATAACTGGGGCACAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
35964024 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 74 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:35964096 original size:9 final size:9
Alignment explanation
Indices: 35964082--35964158 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
35964072 ATCTCGTGTG
35964082 CATATCATA
1 CATATCATA
*
35964091 CATATCATGTG
1 CATATCA--TA
35964102 CATATCATA
1 CATATCATA
* *
35964111 CATGTCATGTG
1 CATATCA--TA
35964122 CATATCATA
1 CATATCATA
*
35964131 CATATCATGTG
1 CATATCA--TA
35964142 CATATCATA
1 CATATCATA
35964151 CATATCAT
1 CATATCAT
35964159 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:35964101 original size:20 final size:20
Alignment explanation
Indices: 35964078--35964160 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
35964068 GAACATCTCG
35964078 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
35964098 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
35964118 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
35964138 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
35964158 TGT
1 TGT
35964161 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:35964107 original size:11 final size:11
Alignment explanation
Indices: 35964078--35964149 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
35964068 GAACATCTCG
35964078 TGTGCATATCA
1 TGTGCATATCA
*
35964089 --TACATATCA
1 TGTGCATATCA
35964098 TGTGCATATCA
1 TGTGCATATCA
* *
35964109 --TACATGTCA
1 TGTGCATATCA
35964118 TGTGCATATCA
1 TGTGCATATCA
*
35964129 --TACATATCA
1 TGTGCATATCA
35964138 TGTGCATATCA
1 TGTGCATATCA
35964149 T
1 T
35964150 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:35964243 original size:25 final size:25
Alignment explanation
Indices: 35964197--35964244 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
35964187 ATATATAAAC
* * * *
35964197 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
35964222 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
35964245 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:35964811 original size:156 final size:156
Alignment explanation
Indices: 35964527--35964840 Score: 601
Period size: 156 Copynumber: 2.0 Consensus size: 156
35964517 CTATTGGGCC
* *
35964527 CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGTCGAAATCACGTCCTTACTGTTTCTAT
1 CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGCCGAAATCACGTCCTTACTGTTTCCAT
35964592 TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAATGAGCGTTCGCTTGCTCACAAGTCCTC
66 TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAATGAGCGTTCGCTTGCTCACAAGTCCTC
35964657 GAAATGCCAGAATTTCGGCATTTCGG
131 GAAATGCCAGAATTTCGGCATTTCGG
35964683 CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGCCGAAATCACGTCCTTACTGTTTCCAT
1 CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGCCGAAATCACGTCCTTACTGTTTCCAT
*
35964748 TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAGTGAGCGTTCGCTTGCTCACAAGTCCTC
66 TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAATGAGCGTTCGCTTGCTCACAAGTCCTC
35964813 GAAATGCCAGAATTTCGGCATTTCGG
131 GAAATGCCAGAATTTCGGCATTTCGG
35964839 CT
1 CT
35964841 TTTCGGCATT
Statistics
Matches: 155, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
156 155 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (156 bp):
CTAATTCAGCCCCTCGAGGCCCAACCTACCTGTGAACGCCGAAATCACGTCCTTACTGTTTCCAT
TGCTCCCAATCATCATCTCATCGATTCTAACTAACTAATGAGCGTTCGCTTGCTCACAAGTCCTC
GAAATGCCAGAATTTCGGCATTTCGG
Found at i:35965608 original size:27 final size:27
Alignment explanation
Indices: 35965578--35965649 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
35965568 TACCATACAG
* **
35965578 GGGTATTTTGGTAGTTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
35965605 GGGTATTGCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
35965632 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
35965650 GTAAATCGAA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:35965671 original size:27 final size:27
Alignment explanation
Indices: 35965642--35965927 Score: 324
Period size: 27 Copynumber: 10.6 Consensus size: 27
35965632 GGGTATTTTA
* * *
35965642 GTAATTTTGTAAATCGAAGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
35965669 GTAATTCTGTGAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
35965696 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
35965723 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
35965750 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
35965777 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
35965804 GTAATTGTGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
35965831 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
35965858 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
35965885 GTAATTCTATAAA-CTGAGGATAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
35965912 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
35965928 GGAGTACTTT
Statistics
Matches: 224, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.00
27 221 0.99
28 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:35969949 original size:60 final size:61
Alignment explanation
Indices: 35969847--35970011 Score: 187
Period size: 60 Copynumber: 2.7 Consensus size: 61
35969837 CCAACTGTGT
* * * *
35969847 TGATATGGGCAAGGCCCAATATA-TCTCGA-CTTGTAATAGGGCTACGGCCCAGATTGATAC
1 TGATATGGGCTAGGCCCAGTATACTCT-GATATTGTAATAGGGCTACGGCCCAGATTAATAC
* * *
35969907 TGATATGGGCTAGGCCCAGTATACTCTGATATTGTAA-GGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACGGCCCAGATTAATAC
*
35969967 TGATATGGGCTAAGGCCCAGT-TAACTCTGAT-TTTTGAATAGGGCT
1 TGATATGGGCT-AGGCCCAGTAT-ACTCTGATATTGT-AATAGGGCT
35970012 TAAGCCCAGT
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
60 57 0.63
61 28 0.31
62 5 0.06
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (61 bp):
TGATATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACGGCCCAGATTAATAC
Found at i:35969976 original size:28 final size:27
Alignment explanation
Indices: 35969885--35969990 Score: 81
Period size: 28 Copynumber: 3.7 Consensus size: 27
35969875 ACTTGTAATA
* *
35969885 GGGCTACGGCCCAGATTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
* *
35969913 GGGCTAGGCCCAGTATACTCTGATATTG-TAAG
1 GGGCTAGGCCCAG---A-T-TAATATTGAT-AT
35969945 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
35969973 GGGCTAAGGCCCAG-TTAA
1 GGGCT-AGGCCCAGATTAA
35969991 CTCTGATTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
27 11 0.17
28 26 0.40
29 3 0.05
30 2 0.03
31 2 0.03
32 14 0.22
33 7 0.11
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATATTGATAT
Found at i:35970444 original size:15 final size:15
Alignment explanation
Indices: 35970424--35970463 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
35970414 TAAACTTTCC
35970424 AAATGGTTTTAAACG
1 AAATGGTTTTAAACG
35970439 AAATGGTTTTAAACG
1 AAATGGTTTTAAACG
35970454 AAATGGTTTT
1 AAATGGTTTT
35970464 TTCCTGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.38, C:0.05, G:0.20, T:0.38
Consensus pattern (15 bp):
AAATGGTTTTAAACG
Found at i:35972698 original size:34 final size:35
Alignment explanation
Indices: 35972646--35972715 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 35
35972636 GTCCAGTCTA
* *
35972646 ATGTACTATTAGTTACATGTATGTC-TCTATTTTG
1 ATGTACTATCAGTCACATGTATGTCTTCTATTTTG
*
35972680 ATGTACTGTCAGTCACATGTATGTCTTTCTATTTTG
1 ATGTACTATCAGTCACATGTATGTC-TTCTATTTTG
35972716 GAAGTCATCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
34 22 0.71
36 9 0.29
ACGTcount: A:0.21, C:0.14, G:0.16, T:0.49
Consensus pattern (35 bp):
ATGTACTATCAGTCACATGTATGTCTTCTATTTTG
Found at i:35977731 original size:46 final size:45
Alignment explanation
Indices: 35977677--35977852 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
35977667 TGTTTGGGCA
35977677 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
35977723 TTCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
35977770 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
35977816 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35977853 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:35977832 original size:93 final size:93
Alignment explanation
Indices: 35977673--35977844 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
35977663 AGGATGTTTG
* **
35977673 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
35977738 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
35977766 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
35977831 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
35977845 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:35982223 original size:71 final size:71
Alignment explanation
Indices: 35982139--35982302 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
35982129 CGATTTGTCT
35982139 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
35982204 CTTTCA
66 CTTTCA
* *
35982210 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
35982275 CTTTCA
66 CTTTCA
35982281 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
35982303 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:35982340 original size:71 final size:70
Alignment explanation
Indices: 35982139--35982336 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
35982129 CGATTTGTCT
* * * * *
35982139 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35982204 CTTTCA
65 CTTTCA
* * * *
35982210 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35982275 CTTTCA
65 CTTTCA
* *
35982281 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
35982337 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:35988968 original size:71 final size:71
Alignment explanation
Indices: 35988884--35989047 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
35988874 CGATTTGTCT
35988884 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
35988949 CTTTCA
66 CTTTCA
* *
35988955 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
35989020 CTTTCA
66 CTTTCA
35989026 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
35989048 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:35989085 original size:71 final size:70
Alignment explanation
Indices: 35988884--35989081 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
35988874 CGATTTGTCT
* * * * *
35988884 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35988949 CTTTCA
65 CTTTCA
* * * *
35988955 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35989020 CTTTCA
65 CTTTCA
* *
35989026 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
35989082 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:35990416 original size:47 final size:47
Alignment explanation
Indices: 35990362--35990602 Score: 365
Period size: 47 Copynumber: 5.1 Consensus size: 47
35990352 TTAGGATTTT
** *
35990362 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
35990409 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
35990456 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
35990503 ATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
35990550 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
35990597 ATGTGA
1 ATGTGA
35990603 AATATGTAGG
Statistics
Matches: 175, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 175 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:35990449 original size:25 final size:25
Alignment explanation
Indices: 35990421--35990492 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 25
35990411 GTGATGAATG
35990421 TGAACATGCATATATGTGATAAGGC
1 TGAACATGCATATATGTGATAAGGC
* *
35990446 TG-A-ATGGC--CTATGTGATGAATG-
1 TGAACAT-GCATATATGTGAT-AAGGC
35990468 TGAACATGCATATATGTGATAAGGC
1 TGAACATGCATATATGTGATAAGGC
35990493 CGAATGGCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
22 10 0.28
23 8 0.22
24 8 0.22
25 10 0.28
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.29
Consensus pattern (25 bp):
TGAACATGCATATATGTGATAAGGC
Found at i:35990558 original size:25 final size:25
Alignment explanation
Indices: 35990483--35990558 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
35990473 ATGCATATAT
35990483 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
35990508 ATGA-ACGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
35990530 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
35990555 GTGA
1 GTGA
35990559 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.22
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:35990902 original size:37 final size:37
Alignment explanation
Indices: 35990757--35990901 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
35990747 GGAAATATAT
*
35990757 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
35990794 TCCGGGTAAGACCCGATGACTATGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
35990831 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
35990868 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
35990902 TCGGCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:35992234 original size:40 final size:40
Alignment explanation
Indices: 35992170--35992334 Score: 242
Period size: 40 Copynumber: 4.1 Consensus size: 40
35992160 GAGAATTGAG
* *
35992170 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTCCCGAAGAGCATTCGTGCT
35992210 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
35992250 AGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
35992290 AGTGATGTATCCGGGCTAGGTCCCGAAGAGTAATCATGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
35992330 AGTGA
1 AGTGA
35992335 CGTGTATTCA
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.02
40 113 0.98
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:35996315 original size:47 final size:47
Alignment explanation
Indices: 35996261--35996540 Score: 425
Period size: 47 Copynumber: 6.0 Consensus size: 47
35996251 TTAGGATTTT
** *
35996261 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
35996308 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
35996355 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
35996402 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* ** * *
35996449 ATGTGATGAACGTGAGTATGCATATGTGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
35996496 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
35996541 TAGTGTGAAA
Statistics
Matches: 212, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 212 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:35996360 original size:22 final size:22
Alignment explanation
Indices: 35996332--35996408 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
35996322 AACATGCATA
35996332 TATGTGATAAGGTCGAATGGCC
1 TATGTGATAAGGTCGAATGGCC
* *
35996354 TATGTGATGAATGT-GAACAT-GCATA
1 TATGTGAT-AAGGTCG-A-ATGGC--C
*
35996379 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGTCGAATGGCC
35996401 TATGTGAT
1 TATGTGAT
35996409 GAATGTGAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 17 0.40
23 9 0.21
24 8 0.19
25 9 0.21
ACGTcount: A:0.30, C:0.12, G:0.29, T:0.30
Consensus pattern (22 bp):
TATGTGATAAGGTCGAATGGCC
Found at i:35996847 original size:37 final size:37
Alignment explanation
Indices: 35996702--35996846 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
35996692 GGAAATATAT
*
35996702 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
35996739 TCCGGGTAAGACCCGATGACTATGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
35996776 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
35996813 TCCGGGTAAGACCCAATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
35996847 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36001642 original size:38 final size:39
Alignment explanation
Indices: 36001592--36001683 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 39
36001582 CCAACTCTAT
* *
36001592 CCAACCCAACACACC-ATGTGGGGATAAAATCG-ACCCAC
1 CCAACCCTACACACCAATATGGGGATAAAATCGTA-CCAC
* *
36001630 CCATCCCTACACACCATATATGGGGATAAAATCGTACCAT
1 CCAACCCTACACACCA-ATATGGGGATAAAATCGTACCAC
36001670 CCAACCCTACACAC
1 CCAACCCTACACAC
36001684 GATAAAGTAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 13 0.28
40 32 0.70
41 1 0.02
ACGTcount: A:0.36, C:0.37, G:0.12, T:0.15
Consensus pattern (39 bp):
CCAACCCTACACACCAATATGGGGATAAAATCGTACCAC
Found at i:36002921 original size:27 final size:26
Alignment explanation
Indices: 36002877--36002930 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
36002867 TAAAATTACC
*
36002877 ATTTTTCCCCTAGGGTGTTAAATGACT
1 ATTTTGCCCCTAGGGTG-TAAATGACT
* *
36002904 ATTTTGCCCCTCGTGTGTAAATGACT
1 ATTTTGCCCCTAGGGTGTAAATGACT
36002930 A
1 A
36002931 ACTTGTGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (26 bp):
ATTTTGCCCCTAGGGTGTAAATGACT
Found at i:36008210 original size:73 final size:67
Alignment explanation
Indices: 36008075--36008210 Score: 182
Period size: 73 Copynumber: 1.9 Consensus size: 67
36008065 TGACTGGAAA
* * *
36008075 CCTCGCTGCAATCTGGTGGCCTCGCCATATATATCTGTTCTGGTGACTTCGTCACAATATCTGGC
1 CCTCGCTGCAATCTGGTGGCCTCGCCATATATATCTGTTCTGGTGACCTAGCCACAATATCTGGC
36008140 AG
66 AG
*
36008142 CCTCGCTGCAATCTGGTGGCTTCGCCACATATATATATATCTGTTCTGGTGACCTAGCCACAATA
1 CCTCGCTGCAATCTGGTGGCCTCG-C-C----ATATATATCTGTTCTGGTGACCTAGCCACAATA
36008207 TCTG
60 TCTG
36008211 TATCTGGTGA
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
67 23 0.39
68 1 0.02
69 1 0.02
73 34 0.58
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.32
Consensus pattern (67 bp):
CCTCGCTGCAATCTGGTGGCCTCGCCATATATATCTGTTCTGGTGACCTAGCCACAATATCTGGC
AG
Found at i:36008220 original size:27 final size:26
Alignment explanation
Indices: 36008178--36008237 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
36008168 ACATATATAT
36008178 ATATCTGTTCTGGTGACCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
36008204 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
36008231 ATATCTG
1 ATATCTG
36008238 GCAGCCCCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:36009044 original size:17 final size:17
Alignment explanation
Indices: 36009012--36009130 Score: 98
Period size: 17 Copynumber: 6.9 Consensus size: 17
36009002 TGTGGCCTGT
*
36009012 CCGTGTGGGCCCACACGC
1 CCGTGTAGG-CCACACGC
36009030 CCGTGTAGGCCACACGC
1 CCGTGTAGGCCACACGC
* * * *
36009047 CTGTATAGCCCACACAC
1 CCGTGTAGGCCACACGC
36009064 CCGTGT-GGCCCACACGC
1 CCGTGTAGG-CCACACGC
* * *
36009081 CTGTGTAGCCCACACGA
1 CCGTGTAGGCCACACGC
*
36009098 CCATGT-GGCCCACACGC
1 CCGTGTAGG-CCACACGC
* *
36009115 CCTTGTAGCCCACACG
1 CCGTGTAGGCCACACG
36009131 GCCTAGCCCA
Statistics
Matches: 79, Mismatches: 18, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
16 2 0.03
17 67 0.85
18 10 0.13
ACGTcount: A:0.18, C:0.43, G:0.24, T:0.14
Consensus pattern (17 bp):
CCGTGTAGGCCACACGC
Found at i:36009077 original size:51 final size:51
Alignment explanation
Indices: 36009012--36009130 Score: 143
Period size: 51 Copynumber: 2.3 Consensus size: 51
36009002 TGTGGCCTGT
*
36009012 CCGTGTGGGCCCACACGCCCGTGTAGGCCACACG-CC-TGTATAGCCCACACAC
1 CCGTGT-GGCCCACACGCCCGTGTAGCCCACACGACCATG--TAGCCCACACAC
* * *
36009064 CCGTGTGGCCCACACGCCTGTGTAGCCCACACGACCATGTGGCCCACACGC
1 CCGTGTGGCCCACACGCCCGTGTAGCCCACACGACCATGTAGCCCACACAC
* *
36009115 CCTTGTAGCCCACACG
1 CCGTGTGGCCCACACG
36009131 GCCTAGCCCA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
51 49 0.83
52 8 0.14
53 2 0.03
ACGTcount: A:0.18, C:0.43, G:0.24, T:0.14
Consensus pattern (51 bp):
CCGTGTGGCCCACACGCCCGTGTAGCCCACACGACCATGTAGCCCACACAC
Found at i:36009130 original size:34 final size:34
Alignment explanation
Indices: 36009020--36009130 Score: 147
Period size: 34 Copynumber: 3.3 Consensus size: 34
36009010 GTCCGTGTGG
* *
36009020 GCCCACACGCCCGTGTAGG-CCACACGCCTGTATA
1 GCCCACACGACCGTGT-GGCCCACACGCCTGTGTA
36009054 GCCCACAC-ACCCGTGTGGCCCACACGCCTGTGTA
1 GCCCACACGA-CCGTGTGGCCCACACGCCTGTGTA
*
36009088 GCCCACACGACCATGTGGCCCACACGCCCT-TGTA
1 GCCCACACGACCGTGTGGCCCACACG-CCTGTGTA
36009122 GCCCACACG
1 GCCCACACG
36009131 GCCTAGCCCA
Statistics
Matches: 70, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
33 2 0.03
34 64 0.91
35 4 0.06
ACGTcount: A:0.20, C:0.44, G:0.23, T:0.14
Consensus pattern (34 bp):
GCCCACACGACCGTGTGGCCCACACGCCTGTGTA
Found at i:36015654 original size:32 final size:33
Alignment explanation
Indices: 36015608--36015671 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
36015598 CACAACGGGT
36015608 ACTGGGCTGAAGCCCT-TTTCAGA-ATACAGTAA
1 ACTGGGCTGAAGCCCTATTTCAGATA-ACAGTAA
**
36015640 ACTGGGCTTTAGCCCTATTTCAGATAACAGTA
1 ACTGGGCTGAAGCCCTATTTCAGATAACAGTA
36015672 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 14 0.50
33 13 0.46
34 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (33 bp):
ACTGGGCTGAAGCCCTATTTCAGATAACAGTAA
Found at i:36018969 original size:29 final size:28
Alignment explanation
Indices: 36018911--36019026 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
36018901 GTGAGCATGA
* * *
36018911 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
36018939 ATATAAATGTGATTTGGGCCTAATGGCCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
36018968 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
36018997 ATATGAATATGATTGGGCTTTAATGGGCC
1 ATATAAATGTGATTGGGC-CTAATGGGCC
36019026 A
1 A
36019027 AATACAGGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
28 17 0.23
29 57 0.77
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:36018996 original size:58 final size:58
Alignment explanation
Indices: 36018924--36019035 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
36018914 TGAATGTGAC
* *
36018924 TGGGCCTAACGGGCCATATAAATGTGATTTGGGC-CTAATGGCCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCTCTAATGGCCCAAATACAGGTGATT
* * * *
36018982 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTTAATGGGCCAAATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCTCTAATGGCCCAAATACAGGT
36019036 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 6 0.13
58 41 0.87
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCTCTAATGGCCCAAATACAGGTGATT
Found at i:36019155 original size:18 final size:18
Alignment explanation
Indices: 36019132--36019171 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
36019122 ACAAGTCAAA
*
36019132 GGGTTAAGGTGTGGCAAT
1 GGGTTAAGCTGTGGCAAT
36019150 GGGTTAAGCTGTGGCAAT
1 GGGTTAAGCTGTGGCAAT
36019168 GGGT
1 GGGT
36019172 ATATGTATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.07, G:0.45, T:0.28
Consensus pattern (18 bp):
GGGTTAAGCTGTGGCAAT
Found at i:36021609 original size:38 final size:38
Alignment explanation
Indices: 36021559--36021654 Score: 113
Period size: 40 Copynumber: 2.5 Consensus size: 38
36021549 CCAACTCTGT
* *
36021559 CCAA-CCTAACACACCATGTAGGGATAAAATTGACCCAC
1 CCAACCCT-ACACACCATATAGGGATAAAATCGACCCAC
* *
36021597 CCATCCCTACACACTACATATGGGGATAAAATCGACCCAC
1 CCAACCCTACACAC--CATATAGGGATAAAATCGACCCAC
*
36021637 CGAACCCTACACACCATA
1 CCAACCCTACACACCATA
36021655 AAGTACCGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
38 13 0.27
39 3 0.06
40 33 0.67
ACGTcount: A:0.38, C:0.35, G:0.11, T:0.16
Consensus pattern (38 bp):
CCAACCCTACACACCATATAGGGATAAAATCGACCCAC
Found at i:36027854 original size:29 final size:29
Alignment explanation
Indices: 36027821--36027922 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
36027811 TGACGAGATC
36027821 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
36027850 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
36027879 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
36027908 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
36027923 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:36034091 original size:46 final size:46
Alignment explanation
Indices: 36034035--36034204 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
36034025 TGGTTGAGCA
36034035 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
36034081 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
** *
36034126 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
36034174 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
36034205 TTAGGGGCGG
Statistics
Matches: 104, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 1 0.01
46 56 0.54
47 28 0.27
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:36034191 original size:93 final size:93
Alignment explanation
Indices: 36034032--36034202 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
36034022 GGATGGTTGA
* *
36034032 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
36034097 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
** *
36034125 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
36034190 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36034203 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36040146 original size:40 final size:40
Alignment explanation
Indices: 36040045--36040229 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
36040035 TATTCGAATG
* *
36040045 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
36040086 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
36040126 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
36040166 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
36040206 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36040230 CTTGTGCGAA
Statistics
Matches: 120, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 90 0.75
41 29 0.24
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:36044912 original size:30 final size:29
Alignment explanation
Indices: 36044869--36044943 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
36044859 CCTCCGAGCT
** * *
36044869 CGCACACCCAGTGCCGTATTTTTTCCAGCT
1 CGCACACTTAGTGCCGTA-TATTTCCAGCA
* *
36044899 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCA
36044928 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
36044944 ATCTCGTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
29 23 0.62
30 14 0.38
ACGTcount: A:0.21, C:0.33, G:0.17, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:36052861 original size:29 final size:29
Alignment explanation
Indices: 36052829--36052906 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
36052819 ATACCCTCCG
* *
36052829 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
36052858 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
36052887 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACCCAGTGCCA
36052907 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:36059517 original size:20 final size:20
Alignment explanation
Indices: 36059492--36059529 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36059482 GTTTATTCGC
*
36059492 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
36059512 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
36059530 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:36064496 original size:46 final size:46
Alignment explanation
Indices: 36064446--36064621 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
36064436 TGGTTGAGCA
*
36064446 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
36064492 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
36064537 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
36064585 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36064622 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36064602 original size:93 final size:93
Alignment explanation
Indices: 36064443--36064613 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
36064433 GGATGGTTGA
* * *
36064443 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36064508 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
36064536 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36064601 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36064614 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:36070033 original size:45 final size:45
Alignment explanation
Indices: 36069875--36070049 Score: 208
Period size: 46 Copynumber: 3.8 Consensus size: 45
36069865 TGGTTGAGCA
*
36069875 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-C
*** * * * *
36069921 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTATGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-AC
*
36069967 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
* *
36070013 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36070050 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
45 36 0.33
46 37 0.34
47 35 0.32
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
Found at i:36072710 original size:27 final size:27
Alignment explanation
Indices: 36072692--36072882 Score: 181
Period size: 27 Copynumber: 7.1 Consensus size: 27
36072682 AATAGTCATC
*
36072692 TTACCATATAAGGGCAAAACAATTATT
1 TTACCATATAAGGGCAAAACAGTTATT
*
36072719 TTACCACT-CAAGGGCAAAACAGTTATT
1 TTACCA-TATAAGGGCAAAACAGTTATT
* * * * *
36072746 TTACCACATAACGGTAAAAAAGTTATC
1 TTACCATATAAGGGCAAAACAGTTATT
* * * *
36072773 TTACTACATAAGGGCAAAATAGTTATC
1 TTACCATATAAGGGCAAAACAGTTATT
* *
36072800 TTAGCAAATAAGGGCAAAACAGTTATT
1 TTACCATATAAGGGCAAAACAGTTATT
* * *
36072827 TTACCACT-TAAGCGCAAAATAGTCATT
1 TTACCA-TATAAGGGCAAAACAGTTATT
* *
36072854 TTACCA-CTAAGGGCAAAACAGTCATT
1 TTACCATATAAGGGCAAAACAGTTATT
36072880 TTA
1 TTA
36072883 TCAATTTAGG
Statistics
Matches: 136, Mismatches: 24, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
26 20 0.15
27 115 0.85
28 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.28
Consensus pattern (27 bp):
TTACCATATAAGGGCAAAACAGTTATT
Found at i:36072791 original size:54 final size:54
Alignment explanation
Indices: 36072670--36072871 Score: 187
Period size: 54 Copynumber: 3.8 Consensus size: 54
36072660 ATATATACAT
* * * * * *
36072670 CACAT-AGGGAAAAATAGTCATCTTACCATATAAGGGCAAAACAA-TTATTTTAC
1 CACATAAGGGCAAAATAGTTATTTTACCACATAACGGCAAAA-AAGTTATCTTAC
* *
36072723 CAC-TCAAGGGCAAAACAGTTATTTTACCACATAACGGTAAAAAAGTTATCTTAC
1 CACAT-AAGGGCAAAATAGTTATTTTACCACATAACGGCAAAAAAGTTATCTTAC
* * * * * * *
36072777 TACATAAGGGCAAAATAGTTATCTTAGCAAATAAGGGCAAAACAGTTATTTTAC
1 CACATAAGGGCAAAATAGTTATTTTACCACATAACGGCAAAAAAGTTATCTTAC
* * * *
36072831 CACTTAAGCGCAAAATAGTCATTTTACCAC-TAAGGGCAAAA
1 CACATAAGGGCAAAATAGTTATTTTACCACATAACGGCAAAA
36072872 CAGTCATTTT
Statistics
Matches: 121, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
52 1 0.01
53 16 0.13
54 103 0.85
55 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (54 bp):
CACATAAGGGCAAAATAGTTATTTTACCACATAACGGCAAAAAAGTTATCTTAC
Found at i:36072824 original size:81 final size:82
Alignment explanation
Indices: 36072679--36072873 Score: 238
Period size: 81 Copynumber: 2.4 Consensus size: 82
36072669 TCACATAGGG
* * * *
36072679 AAAAATAGTCATCTTACCATATAAGGGCAAAACAATTATTTTACCACTCAAGGGCAAAACAGTTA
1 AAAAATAGTCATCTTACCACATAAGGGCAAAACAATTATCTTACAAATCAAGGGCAAAACAGTTA
36072744 TTTTACCACATAACGGT
66 TTTTACCACATAACGGT
* * * *
36072761 AAAAA-AGTTATCTTACTACATAAGGGCAAAATAGTTATCTTAGCAAAT-AAGGGCAAAACAGTT
1 AAAAATAGTCATCTTACCACATAAGGGCAAAACAATTATCTTA-CAAATCAAGGGCAAAACAGTT
*
36072824 ATTTTACCACTTAA-GCG-
65 ATTTTACCACATAACG-GT
* *
36072841 CAAAATAGTCATTTTACCAC-TAAGGGCAAAACA
1 AAAAATAGTCATCTTACCACATAAGGGCAAAACA
36072874 GTCATTTTAT
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
80 17 0.18
81 71 0.74
82 8 0.08
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (82 bp):
AAAAATAGTCATCTTACCACATAAGGGCAAAACAATTATCTTACAAATCAAGGGCAAAACAGTTA
TTTTACCACATAACGGT
Found at i:36074794 original size:40 final size:40
Alignment explanation
Indices: 36074542--36074787 Score: 388
Period size: 40 Copynumber: 6.2 Consensus size: 40
36074532 AACCCAATTA
* * *
36074542 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
36074581 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
36074621 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
36074661 CCTTCGGGACTTAGCCCAGATATAGTCACTAGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
36074701 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36074741 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36074781 CCTTCGG
1 CCTTCGG
36074788 ATCTTAGTCC
Statistics
Matches: 192, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 13 0.07
40 179 0.93
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:36076180 original size:13 final size:13
Alignment explanation
Indices: 36076162--36076187 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36076152 ATTTTTATTT
36076162 TTAACATAAAATA
1 TTAACATAAAATA
36076175 TTAACATAAAATA
1 TTAACATAAAATA
36076188 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:36077272 original size:3 final size:3
Alignment explanation
Indices: 36077241--36077316 Score: 111
Period size: 3 Copynumber: 25.0 Consensus size: 3
36077231 ATAGACTCCA
36077241 AAG AA- AAG -AG AGAG AAG AGAG AGAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG A-AG AAG A-AG A-AG AAG AAG AAG AAG AAG AAG AAG
36077287 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
36077317 TAATGATAAA
Statistics
Matches: 69, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
2 4 0.06
3 55 0.80
4 10 0.14
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
AAG
Done.