Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 123 of 410
Found at i:37025384 original size:48 final size:48
Alignment explanation
Indices: 37025308--37025401 Score: 136
Period size: 48 Copynumber: 2.0 Consensus size: 48
37025298 TCTGTAATTC
*
37025308 TACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGATATTTCGG
1 TACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGATATTTCGG
* * *
37025356 TACCCTATAGGGGTATTT-GAGTAATTCTACCCTACAGGGGTATTTC
1 TACCCTACAGGGGTATTTCG-GTAATTCTACCCTACAAGGATATTTC
37025402 AATAATTTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.02
48 40 0.98
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (48 bp):
TACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGATATTTCGG
Found at i:37025394 original size:27 final size:27
Alignment explanation
Indices: 37025273--37025401 Score: 128
Period size: 27 Copynumber: 5.0 Consensus size: 27
37025263 GGGGCAAAAT
* * *
37025273 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
37025300 TGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
37025327 GGTATTTCTACCCTACAAGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
37025354 GG------TACCCTATAGGGGTATTT-
1 GGTAATTCTACCCTACAGGGGTATTTC
37025374 GAGTAATTCTACCCTACAGGGGTATTTC
1 G-GTAATTCTACCCTACAGGGGTATTTC
37025402 AATAATTTTG
Statistics
Matches: 82, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
20 1 0.01
21 16 0.20
27 65 0.79
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:37032778 original size:28 final size:28
Alignment explanation
Indices: 37032746--37032844 Score: 121
Period size: 28 Copynumber: 3.5 Consensus size: 28
37032736 GCAATAAGCC
*
37032746 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
37032774 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* *
37032802 TGCACACTTAGTGCTGT-ATAATTTGAACT
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
37032831 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37032845 CAATTTGTGA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.66
29 18 0.30
30 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:37047902 original size:20 final size:20
Alignment explanation
Indices: 37047879--37047916 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37047869 CACATCCAAA
*
37047879 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
37047899 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
37047917 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:37053075 original size:40 final size:40
Alignment explanation
Indices: 37053017--37053184 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
37053007 CAATTGAATG
* *
37053017 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
37053058 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
37053097 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
37053137 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
37053177 ATATCCGG
1 ATATCCGG
37053185 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:37053155 original size:80 final size:79
Alignment explanation
Indices: 37053017--37053184 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
37053007 CAATTGAATG
* * *
37053017 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
37053082 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
37053097 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
37053161 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
37053177 ATATCCGG
1 ATATCCGG
37053185 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:37060863 original size:40 final size:40
Alignment explanation
Indices: 37060805--37060972 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
37060795 CAATTGAATG
* *
37060805 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
37060846 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
37060885 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
37060925 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
37060965 ATATCCGG
1 ATATCCGG
37060973 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:37060943 original size:80 final size:79
Alignment explanation
Indices: 37060805--37060972 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
37060795 CAATTGAATG
* * *
37060805 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
37060870 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
37060885 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
37060949 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
37060965 ATATCCGG
1 ATATCCGG
37060973 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:37066833 original size:20 final size:20
Alignment explanation
Indices: 37066810--37066847 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37066800 CACATCCAAA
*
37066810 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
37066830 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
37066848 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:37074408 original size:28 final size:27
Alignment explanation
Indices: 37074346--37074409 Score: 110
Period size: 27 Copynumber: 2.3 Consensus size: 27
37074336 AATTACTTGA
*
37074346 ATACCCCTATGTATGGAAATTCCTGTT
1 ATACCCCTATGTATGGAAATTACTGTT
37074373 ATACCCCTATGTATGGAAATTTACTGTT
1 ATACCCCTATGTATGGAAA-TTACTGTT
37074401 ATACCCCTA
1 ATACCCCTA
37074410 GGTGCAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 19 0.54
28 16 0.46
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.36
Consensus pattern (27 bp):
ATACCCCTATGTATGGAAATTACTGTT
Found at i:37074581 original size:27 final size:26
Alignment explanation
Indices: 37074541--37074652 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
37074531 AGGAAGCGTC
*
37074541 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
37074568 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
37074595 CTAGTGGCTCTGCCACGATTGTCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* ** *
37074623 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
37074649 CTGG
1 CTGG
37074653 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.69
28 15 0.21
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:37074645 original size:54 final size:54
Alignment explanation
Indices: 37074544--37074650 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
37074534 AAGCGTCCTG
* *
37074544 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTA
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTTCTA
* * * *
37074598 GTGGCTCTGCCACGATTGTCTGTATCTGGTGACTCTATCACAT-TATCTGTTCT
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTGTTCT
37074651 GGCAGCCATG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTTCTA
Found at i:37081274 original size:93 final size:93
Alignment explanation
Indices: 37081162--37081332 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
37081152 GCCCATAAGT
*
37081162 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37081226 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
37081255 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37081320 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37081333 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37081327 original size:46 final size:46
Alignment explanation
Indices: 37081154--37081329 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
37081144 TGTAACCCGC
* *
37081154 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
*
37081200 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
37081250 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37081293 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37081330 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 62 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37096623 original size:39 final size:39
Alignment explanation
Indices: 37096573--37096883 Score: 523
Period size: 39 Copynumber: 8.0 Consensus size: 39
37096563 ATTATATTAT
* * *
37096573 CAGCACAAAGCCTGCAGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
37096612 CAGCACGAAGCCTGCGGGACTTTGGCCCAGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
37096651 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
37096690 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
37096729 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
37096768 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
37096807 CAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
37096846 CAGCATGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
37096884 TCAGTGTCTT
Statistics
Matches: 260, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 260 1.00
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:37100102 original size:24 final size:25
Alignment explanation
Indices: 37100047--37100102 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
37100037 TTGGTGTCGA
37100047 TTTCTTCTTCCTCTCTTTTTCCTCT
1 TTTCTTCTTCCTCTCTTTTTCCTCT
* * * *
37100072 ATT-TTCTTTCTTTCTTTTTGCT-T
1 TTTCTTCTTCCTCTCTTTTTCCTCT
37100095 TTTCTTCT
1 TTTCTTCT
37100103 ACCTGAAACC
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 3 0.12
24 20 0.80
25 2 0.08
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.70
Consensus pattern (25 bp):
TTTCTTCTTCCTCTCTTTTTCCTCT
Found at i:37105332 original size:54 final size:54
Alignment explanation
Indices: 37105234--37105360 Score: 168
Period size: 54 Copynumber: 2.4 Consensus size: 54
37105224 CAAAATGGTA
* * *
37105234 ATTT-TACCCCACAAGGGTATCTCGGTAATTTTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* *
37105287 ATTTCTACCCTACAAGGGTA-CTTCGGTAATTCTACCTTACAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATC-TCGGTAATTCTACCCTACAGGGGTATTTCAGT
* *
37105341 AATTCTACCCTACAGGGGTA
1 ATTTCTACCCTACAAGGGTA
37105361 GTTCAATAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
53 5 0.08
54 60 0.92
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGT
Found at i:37105370 original size:27 final size:27
Alignment explanation
Indices: 37105231--37105371 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 27
37105221 GGGCAAAATG
* * * * *
37105231 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
37105258 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
37105285 GTATTTCTACCCTACAAGGGTACTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
37105312 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
37105339 GTAATTCTACCCTACAGGGGTAGTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
37105366 ATAATT
1 GTAATT
37105372 TTGTAAATCG
Statistics
Matches: 97, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:37105450 original size:27 final size:27
Alignment explanation
Indices: 37105416--37105833 Score: 274
Period size: 27 Copynumber: 15.5 Consensus size: 27
37105406 TCCAGGAAAC
*
37105416 TTTGGTAATTTTATAAATCGAGGGTAT
1 TTTGGTAATTTTACAAATCGAGGGTAT
* *
37105443 TTTAGTAATTTTGCAAA-CTGAGGGTAT
1 TTTGGTAATTTTACAAATC-GAGGGTAT
*
37105470 TTTGGTAATTTCACAAATC-AGGGGTAT
1 TTTGGTAATTTTACAAATCGA-GGGTAT
*
37105497 TTTGGTAATTTTACAAA-CTAGGGGTAT
1 TTTGGTAATTTTACAAATCGA-GGGTAT
** * *
37105524 TTTGGTAATTTTGTAAACCAAGGGTAT
1 TTTGGTAATTTTACAAATCGAGGGTAT
* *
37105551 TTTGGTAATTTTACAAGTCAAGGGTAT
1 TTTGGTAATTTTACAAATCGAGGGTAT
*** * *
37105578 TTCAATAATTTCACAAAT-TAGGGGTAT
1 TTTGGTAATTTTACAAATCGA-GGGTAT
*
37105605 TTTGGTAATTTTAAAAATC-AGGGGTAT
1 TTTGGTAATTTTACAAATCGA-GGGTAT
* * *
37105632 TTTGGTAATTCTACACTAT-AAGGGTAT
1 TTTGGTAATTTTACA-AATCGAGGGTAT
* * * *
37105659 TTTAGTAATTTCAC-AATTGAGGGTAA
1 TTTGGTAATTTTACAAATCGAGGGTAT
*** ** *
37105685 AACGGTAATTTTGGAAATCGAGGGTAA
1 TTTGGTAATTTTACAAATCGAGGGTAT
** * ** * *
37105712 AATAGTAATTTTGTAAATCAAGGGTAA
1 TTTGGTAATTTTACAAATCGAGGGTAT
** * * * * *
37105739 AATAGTGATTTTATAAATTGAGGGTAC
1 TTTGGTAATTTTACAAATCGAGGGTAT
** * *
37105766 TTTGGTAATTTTGTAAACCAAGGGTAT
1 TTTGGTAATTTTACAAATCGAGGGTAT
*
37105793 TTTGGTAATTTTACAACTCGAGGGTAT
1 TTTGGTAATTTTACAAATCGAGGGTAT
**
37105820 TTCAGTAATTTTAC
1 TTTGGTAATTTTAC
37105834 TATTTTGGTA
Statistics
Matches: 313, Mismatches: 67, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
25 2 0.01
26 17 0.05
27 288 0.92
28 6 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
TTTGGTAATTTTACAAATCGAGGGTAT
Found at i:37105817 original size:81 final size:81
Alignment explanation
Indices: 37105420--37105833 Score: 363
Period size: 81 Copynumber: 5.1 Consensus size: 81
37105410 GGAAACTTTG
* * * * ** *
37105420 GTAATTTTATAAATCGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTTGGTAATTTCACA
1 GTAATTTTACAAATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
* * *
37105485 AATCAGGGGTATTTTG
66 AATCAAGGGTAATTTA
*
37105501 GTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTAC
1 GTAATTTTACAAATTGA-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTAC
*
37105565 AAGTCAAGGGT-ATTTCA
65 AAATCAAGGGTAATTT-A
* * ** * * *
37105582 ATAATTTCACAAATT-AGGGGTATTTTGGTAATTTTAAAAATCAGGGGTATTTTGGTAATTCTAC
1 GTAATTTTACAAATTGA-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTAC
* *
37105646 ACTAT-AAGGGTATTTTA
65 A-AATCAAGGGTAATTTA
* **** * * * *** * **
37105663 GTAATTTCAC-AATTGAGGGTAAAACGGTAATTTTGGAAATCGAGGGTAAAATAGTAATTTTGTA
1 GTAATTTTACAAATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
**
37105727 AATCAAGGGTAAAATA
66 AATCAAGGGTAATTTA
* * *
37105743 GTGATTTTATAAATTGAGGGTACTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
* *
37105808 ACTCGAGGGT-ATTTCA
66 AATCAAGGGTAATTT-A
37105824 GTAATTTTAC
1 GTAATTTTAC
37105834 TATTTTGGTA
Statistics
Matches: 260, Mismatches: 65, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
79 2 0.01
80 59 0.23
81 195 0.75
82 4 0.02
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
GTAATTTTACAAATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
AATCAAGGGTAATTTA
Found at i:37105908 original size:27 final size:27
Alignment explanation
Indices: 37105878--37105969 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
37105868 GTAATTTCAC
* *
37105878 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
37105905 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * * *
37105932 AATCAAGGTTAAAACAGTGATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
37105959 AATTGAGGGTA
1 AATCGAGGGTA
37105970 CTTTGGTAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:37107461 original size:17 final size:18
Alignment explanation
Indices: 37107439--37107472 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
37107429 ACCCAAATTT
37107439 AGAAAAAAA-AAAAAAAG
1 AGAAAAAAATAAAAAAAG
37107456 AGAAAAAAATAAAAAAA
1 AGAAAAAAATAAAAAAA
37107473 TAACAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (18 bp):
AGAAAAAAATAAAAAAAG
Found at i:37108496 original size:16 final size:16
Alignment explanation
Indices: 37108475--37108505 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37108465 AACCCAACCC
*
37108475 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
37108491 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
37108506 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:37108678 original size:27 final size:27
Alignment explanation
Indices: 37108648--37108815 Score: 201
Period size: 27 Copynumber: 6.2 Consensus size: 27
37108638 GGGCAAAATG
* * *
37108648 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
37108675 GTAATTCTGCCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37108702 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37108729 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * **
37108756 GTAATTCTAGCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
37108783 GTAATTCTACTCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37108810 ATAATT
1 GTAATT
37108816 TTGTAAATTG
Statistics
Matches: 121, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:37108740 original size:81 final size:81
Alignment explanation
Indices: 37108648--37108815 Score: 239
Period size: 81 Copynumber: 2.1 Consensus size: 81
37108638 GGGCAAAATG
* *
37108648 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCT-GCCCTACAGGGGTATTTCGGTATTTCTAC
1 GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTAG-CCTACAGGGGTATTTCGGTAATTCTAC
37108712 CCTACAAGGGTATTTCA
65 CCTACAAGGGTATTTCA
* * * * *
37108729 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAGCCTACAGGGGTATTTTGGTAATTCTACT
1 GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTAGCCTACAGGGGTATTTCGGTAATTCTACC
*
37108794 CTACAGGGGTATTTCA
66 CTACAAGGGTATTTCA
*
37108810 ATAATT
1 GTAATT
37108816 TTGTAAATTG
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 76 0.99
82 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTAGCCTACAGGGGTATTTCGGTAATTCTACC
CTACAAGGGTATTTCA
Found at i:37108803 original size:54 final size:54
Alignment explanation
Indices: 37108648--37108815 Score: 228
Period size: 54 Copynumber: 3.1 Consensus size: 54
37108638 GGGCAAAATG
* * * * *
37108648 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCTGCCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
37108702 GTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * ** *
37108756 GTAATTCTAGCCTACAGGGGTATTTTGGTAATTCTACTCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
37108810 ATAATT
1 GTAATT
37108816 TTGTAAATTG
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:37108896 original size:55 final size:54
Alignment explanation
Indices: 37108837--37108943 Score: 126
Period size: 55 Copynumber: 2.0 Consensus size: 54
37108827 GGGTAAAATG
* *
37108837 GTAATTTAGTAAATCCAGGATACTTTGGTAATTTTTACAAATCGAGGG-TATTTCA
1 GTAATTTAGCAAATCCAGGATACTTTGGTAA-TTTCACAAATC-AGGGATATTTCA
* ** * *
37108892 GTAATTTTGCAAATTGAGGGTATTTTGGTAATTTCACAAATCAGGGATATTT
1 GTAATTTAGCAAATCCAGGATACTTTGGTAATTTCACAAATCAGGGATATTT
37108944 TAGTCTCAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
53 4 0.09
54 15 0.34
55 25 0.57
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
GTAATTTAGCAAATCCAGGATACTTTGGTAATTTCACAAATCAGGGATATTTCA
Found at i:37108910 original size:27 final size:27
Alignment explanation
Indices: 37108864--37108943 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
37108854 GGATACTTTG
37108864 GTAATTTTTACAAATCGAGGGTATTTCA
1 GTAA-TTTTACAAATCGAGGGTATTTCA
* * **
37108892 GTAATTTTGCAAATTGAGGGTATTTTG
1 GTAATTTTACAAATCGAGGGTATTTCA
*
37108919 GTAATTTCACAAATC-AGGGATATTT
1 GTAATTTTACAAATCGAGGG-TATTT
37108944 TAGTCTCAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.09
27 36 0.82
28 4 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTCA
Found at i:37108999 original size:27 final size:27
Alignment explanation
Indices: 37108952--37109361 Score: 180
Period size: 27 Copynumber: 15.0 Consensus size: 27
37108942 TTTAGTCTCA
37108952 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
37108979 GTATTTCCACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
37109006 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
37109033 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* ** * **
37109060 ATAATT-T--TGTAAATCGAGGGTA-AACG
1 GTAATTCTACCCTACA--G-GGGTATTTCG
** * *
37109086 GTAATTCTTTA-AATCCA-GGATACTTT-G
1 GTAATTC--TACCCTACAGGGGTA-TTTCG
* ** *
37109113 GTAATTTTTA-CAAATC-GAGGGTATTTCA
1 GTAA-TTCTACCCTA-CAG-GGGTATTTCG
** ** ** *
37109141 GTAATT-TTGCAAATTGAGGGTATTTTG
1 GTAATTCTACCCTACAG-GGGTATTTCG
** *
37109168 GTAATT-T-CACAAATCAGGGGTATTTTG
1 GTAATTCTAC-CCTA-CAGGGGTATTTCG
* ** *
37109195 GTAATTTTA-CAAACTAGGGGTATTTTG
1 GTAATTCTACCCTAC-AGGGGTATTTCG
37109222 GTCTCAGTAATTCTACCCTACAGGGGTATTTCG
1 G--T-A--A-TTCTACCCTACAGGGGTATTTCG
* * **
37109255 GTATTTCCACCCTACAACGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
37109282 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
37109309 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
37109336 GTAATTCTACCCTATAGGGATATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
37109362 AATAATTTTG
Statistics
Matches: 300, Mismatches: 55, Indels: 56
0.73 0.13 0.14
Matches are distributed among these distances:
24 3 0.01
26 17 0.06
27 241 0.80
28 12 0.04
29 2 0.01
30 4 0.01
31 1 0.00
32 1 0.00
33 16 0.05
34 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:37109180 original size:54 final size:55
Alignment explanation
Indices: 37109109--37109630 Score: 192
Period size: 54 Copynumber: 9.5 Consensus size: 55
37109099 TCCAGGATAC
* * *
37109109 TTTGGTAATTTTTACAAATC-GAGGGTATTTCAGTAATTTTGCAAA-TTGAGGGTAT
1 TTTGGTAATTTTCACAAATCAG-GGGTATTTCAGTAATTTTACAAACTAG-GGGTAT
**
37109164 TTTGGTAA-TTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTAT
1 TTTGGTAATTTTCACAAATCAGGGGTATTTCAGTAATTTTACAAACTAGGGGTAT
* * ** * * ** **
37109218 TTTGGTCTCAGTAATTCTAC-CCTACAGGGGTATTTCGGT-A-TTTCCACCCTACAACGGTAT
1 TTTGG--T-AAT-TTTC-ACAAAT-CAGGGGTATTTCAGTAATTTTACAAACT--AGGGGTAT
* * ** * **
37109278 TTCGGTAATTCT-ACCCTAT-AGGGGTATTTCAGTAATTCTACCCTAC-AGGGGTAT
1 TTTGGTAATTTTCA-CAAATCAGGGGTATTTCAGTAATTTTA-CAAACTAGGGGTAT
* ** * * ** * *
37109332 TTTGGTAATTCT-ACCCTAT-AGGGATATTTCAATAATTTTGTAAA-TCGAGGGTAA
1 TTTGGTAATTTTCA-CAAATCAGGGGTATTTCAGTAATTTTACAAACTAG-GGGTAT
** * * * * *
37109386 AATGGTAATTCT-ATAAATCCA-GGATACTTT-GGTAACTTTTACAAA-TCGAGGGTAT
1 TTTGGTAATTTTCACAAAT-CAGGGGTA-TTTCAGTAA-TTTTACAAACTAG-GGGTAT
* * * ** * *
37109441 TTTAGTAATTTT-GCAAAT-TGAGGGTATTTTGGTTATTTCACAAA-TCAGGGGTAT
1 TTTGGTAATTTTCACAAATCAG-GGGTATTTCAGTAATTTTACAAACT-AGGGGTAT
** * * **
37109495 TTTGGTAATTTT-ACAAATCAGGGGTATTTTGGTAATTTTATAAACCAAAGGTAT
1 TTTGGTAATTTTCACAAATCAGGGGTATTTCAGTAATTTTACAAACTAGGGGTAT
* * *
37109549 TTTGGTAATTTT-ACAAGTC-GAGGGTATTTCAGTAATTTCACAAATTAGGGGTAT
1 TTTGGTAATTTTCACAAATCAG-GGGTATTTCAGTAATTTTACAAACTAGGGGTAT
*
37109603 TTT-GTAA-TTTCACAAATCAAGGGTATTT
1 TTTGGTAATTTTCACAAATCAGGGGTATTT
37109631 TGGTAATTCT
Statistics
Matches: 356, Mismatches: 80, Indels: 64
0.71 0.16 0.13
Matches are distributed among these distances:
52 3 0.01
53 23 0.06
54 226 0.63
55 55 0.15
56 5 0.01
57 5 0.01
58 8 0.02
59 5 0.01
60 26 0.07
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (55 bp):
TTTGGTAATTTTCACAAATCAGGGGTATTTCAGTAATTTTACAAACTAGGGGTAT
Found at i:37109203 original size:81 final size:81
Alignment explanation
Indices: 37108860--37109630 Score: 260
Period size: 81 Copynumber: 9.4 Consensus size: 81
37108850 TCCAGGATAC
* *
37108860 TTTGGTAATTTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTTGGTAATT
1 TTTGGTAA-TTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATT
*
37108925 TCACAAATCAGGGATAT
65 TCACAAATCAGGGGTAT
* ** * * ** *
37108942 TTTAGTCTCAGTAATTCTAC-CCTAC-AGGGGTATTTCGGT-A-TTTCCACCCTACAAGGGTATT
1 TTT-G-----GTAATTTTACAAAT-CGA-GGGTATTTCAGTAATTTTACA-AAT-CGAGGGTATT
* **
37109003 TCGGTAA-TTCTAC-CCTACAGGGGTAT
56 TTGGTAATTTC-ACAAAT-CAGGGGTAT
** * ** * ** ***
37109029 TTCAGTAATTCTAC-CCTAC-AGGGGTATTTCAATAATTTTGTAAATCGAGGGTA-AACGGTAA-
1 TTTGGTAATTTTACAAAT-CGA-GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAAT
** * *
37109090 TTCTTTAAATCCA-GGATAC
64 TTC-ACAAAT-CAGGGGTAT
* *
37109109 TTTGGTAATTTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTTGGTAATT
1 TTTGGTAA-TTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATT
37109174 TCACAAATCAGGGGTAT
65 TCACAAATCAGGGGTAT
* * **
37109191 TTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTCTCAGTAATTCTAC-CCTAC-AGGGGTATTT
1 TTTGGTAATTTTACAAATCGA-GGGTA---T--T-TCAGTAATTTTACAAAT-CGA-GGGTATTT
* ** **
37109253 CGGT-ATTTC-CACCCTACAACGGTAT
57 TGGTAATTTCACA-AAT-CAGGGGTAT
* * ** * * **
37109278 TTCGGTAATTCTACCCTATAG-GGGTATTTCAGTAATTCTAC-CCTAC-AGGGGTATTTTGGTAA
1 TTTGGTAATTTTA-CAAATCGAGGGTATTTCAGTAATTTTACAAAT-CGA-GGGTATTTTGGTAA
** *
37109340 -TTCTACCCTAT-AGGGATAT
63 TTTC-A-CAAATCAGGGGTAT
*** ** ** * * * * * *
37109359 TTCAATAATTTTGTAAATCGAGGGTAAAAT-GGTAATTCTATAAATCCAGGATACTTTGGTAACT
1 TTTGGTAATTTTACAAATCGAGGGT-ATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAA-T
*
37109423 TTTACAAATC-GAGGGTAT
64 TTCACAAATCAG-GGGTAT
* * * ** * *
37109441 TTTAGTAATTTTGCAAATTGAGGGTATTTTGGTTATTTCACAAATC-AGGGGTATTTTGGTAATT
1 TTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGA-GGGTATTTTGGTAATT
*
37109505 TTACAAATCAGGGGTAT
65 TCACAAATCAGGGGTAT
* * * * ** * **
37109522 TTTGGTAATTTTATAAACCAAAGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTT
1 TTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTT
*
37109587 CACAAATTAGGGGTAT
66 CACAAATCAGGGGTAT
* *
37109603 TTT-GTAATTTCACAAATCAAGGGTATTT
1 TTTGGTAATTTTACAAATCGAGGGTATTT
37109631 TGGTAATTCT
Statistics
Matches: 519, Mismatches: 120, Indels: 102
0.70 0.16 0.14
Matches are distributed among these distances:
80 46 0.09
81 254 0.49
82 87 0.17
83 11 0.02
84 3 0.01
85 7 0.01
86 17 0.03
87 88 0.17
88 6 0.01
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (81 bp):
TTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTT
CACAAATCAGGGGTAT
Found at i:37109242 original size:249 final size:250
Alignment explanation
Indices: 37108726--37109314 Score: 854
Period size: 249 Copynumber: 2.4 Consensus size: 250
37108716 CAAGGGTATT
* * *
37108726 TCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAGCCTACAGGGGTATTTTGGTAATTCT
1 TCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCT
* * *
37108791 ACTCTACAGGGGTATTTCAATAATTTTGTAAATTGAGGGTAAAATGGTAATTTAGTAAATCCAGG
66 ACCCTACAGGGGTATTTCAATAATTTTGTAAATCGAGGGTAAAACGGTAATTTAGTAAATCCAGG
37108856 ATACTTTGGTAATTTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTTGGT
131 ATACTTTGGTAATTTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTTGGT
**
37108921 AATTTCACAAATCAGGGATATTTTAGTCTCAGTAATTCTACCCTACAGGGGTATTTCGG
196 AATTTCACAAATCAGGGATATTTTAG---C-GTAATTCTACCAAACAGGGGTATTTCGG
* * *
37108980 T-A-T--TTCCACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCT
1 TCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCT
*
37109041 ACCCTACAGGGGTATTTCAATAATTTTGTAAATCGAGGGT-AAACGGTAATTCT-TTAAATCCAG
66 ACCCTACAGGGGTATTTCAATAATTTTGTAAATCGAGGGTAAAACGGTAATT-TAGTAAATCCAG
37109104 GATACTTTGGTAATTTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTTGG
130 GATACTTTGGTAATTTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTTGG
* * *
37109169 TAATTTCACAAATCAGGGGTATTTT-G-GTAATTTTA-CAAACTAGGGGTATTTTGG
195 TAATTTCACAAATCAGGGATATTTTAGCGTAATTCTACCAAAC-AGGGGTATTTCGG
* * **
37109223 TCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCCACCCTACAACGGTATTTCGGTAATT
1 --TCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATT
* *
37109288 CTACCCTATAGGGGTATTTCAGTAATT
64 CTACCCTACAGGGGTATTTCAATAATT
37109315 CTACCCTACA
Statistics
Matches: 303, Mismatches: 24, Indels: 21
0.87 0.07 0.06
Matches are distributed among these distances:
242 3 0.01
243 20 0.07
245 1 0.00
246 1 0.00
247 1 0.00
248 1 0.00
249 182 0.60
250 91 0.30
252 1 0.00
253 1 0.00
254 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (250 bp):
TCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCT
ACCCTACAGGGGTATTTCAATAATTTTGTAAATCGAGGGTAAAACGGTAATTTAGTAAATCCAGG
ATACTTTGGTAATTTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTTGGT
AATTTCACAAATCAGGGATATTTTAGCGTAATTCTACCAAACAGGGGTATTTCGG
Found at i:37109262 original size:276 final size:276
Alignment explanation
Indices: 37108670--37109497 Score: 992
Period size: 276 Copynumber: 3.0 Consensus size: 276
37108660 CACAAGGGTA
* * *
37108670 TCTCAGTAATTCTGCCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATT
1 TCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCCACCCTACAAGGGTATTTCGGTAATT
* *** *
37108735 CTACCCTACAGGGGTATTTCAGTAATTCTAGCCTACAGGGGTATTTTGGTAATTCTACTCTACAG
66 CTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTA-TCTAAAG
** ** * * *
37108800 GGGTATTTCAATAATTTTGTAAATTGAGGGTAAAATGGTAATTTAGTAAATCCAGGATACTTTGG
130 GGGTATAACAATAATTTTGTAAATCCAGGATAAAATGGTAATTTAGCAAATCCAGGATACTTTAG
** *
37108865 TAATTTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTTGGTAATTTCACA
195 TAATTTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATAGAGGGTATTTTGGTAATTTCACA
37108930 AATCAGGGATATTTTAG
260 AATCAGGGATATTTTAG
37108947 TCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCCACCCTACAAGGGTATTTCGGTAATT
1 TCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCCACCCTACAAGGGTATTTCGGTAATT
*
37109012 CTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATT-T-TGTAAATC
66 CTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTATCTAAA--
** *** * *
37109075 GAGGGTA-AACGGTAATTCTT-TAAATCCAGGATACTTTGGTAATTTTTA-CAAATCGAGGGTA-
129 G-GGGTATAACAATAATT-TTGTAAATCCAGGATAAAATGGTAA--TTTAGCAAATCCAGGATAC
* * **
37109136 TTTCAGTAA-TTTTGCAAATTGAGGGTATTTTGGTAATTTCACAAATCAG-GGGTATTTTGGTAA
190 TTT-AGTAATTTTTACAAATCGAGGGTATTTCAGTAATTTCACAAAT-AGAGGGTATTTTGGTAA
* * *
37109199 TTTTACAAA-CTAGGGGTATTTTGG
253 TTTCACAAATC-AGGGATATTTTAG
*
37109223 TCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCCACCCTACAACGGTATTTCGGTAATT
1 TCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCCACCCTACAAGGGTATTTCGGTAATT
* *** * *
37109288 CTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAG
66 CTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTA-TCTAAAG
* ** * * * *
37109353 GGATATTTCAATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTA-TAAATCCAGGATACTTTG
130 GGGTATAACAATAATTTTGTAAATCCAGGATAAAATGGTAATT-TAGCAAATCCAGGATACTTTA
* * ** * *
37109417 GTAACTTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAATTGAGGGTATTTTGGTTATTTCAC
194 GTAATTTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATAGAGGGTATTTTGGTAATTTCAC
*
37109482 AAATCAGGGGTATTTT
259 AAATCAGGGATATTTT
37109498 GGTAATTTTA
Statistics
Matches: 469, Mismatches: 63, Indels: 38
0.82 0.11 0.07
Matches are distributed among these distances:
274 4 0.01
275 3 0.01
276 228 0.49
277 226 0.48
278 5 0.01
279 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (276 bp):
TCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCCACCCTACAAGGGTATTTCGGTAATT
CTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTATCTAAAGG
GGTATAACAATAATTTTGTAAATCCAGGATAAAATGGTAATTTAGCAAATCCAGGATACTTTAGT
AATTTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATAGAGGGTATTTTGGTAATTTCACAA
ATCAGGGATATTTTAG
Found at i:37109368 original size:27 final size:27
Alignment explanation
Indices: 37109228--37109361 Score: 187
Period size: 27 Copynumber: 5.0 Consensus size: 27
37109218 TTTGGTCTCA
37109228 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * **
37109255 GTATTTCCACCCTACAACGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
37109282 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
37109309 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
37109336 GTAATTCTACCCTATAGGGATATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
37109362 AATAATTTTG
Statistics
Matches: 91, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:37109458 original size:27 final size:27
Alignment explanation
Indices: 37109364--37109638 Score: 252
Period size: 27 Copynumber: 10.2 Consensus size: 27
37109354 GATATTTCAA
** ***
37109364 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * * * *
37109391 TAATTCTATAAATCCAGGATACTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
*
37109418 TAACTTTTACAAATCGAGGGTATTTTAG
1 TAA-TTTTACAAATCGAGGGTATTTTGG
* *
37109446 TAATTTTGCAAATTGAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
37109473 TTATTTCACAAATC-AGGGGTATTTTGG
1 TAATTTTACAAATCGA-GGGTATTTTGG
37109500 TAATTTTACAAATC-AGGGGTATTTTGG
1 TAATTTTACAAATCGA-GGGTATTTTGG
* * * *
37109527 TAATTTTATAAACCAAAGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* **
37109554 TAATTTTACAAGTCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
37109581 TAATTTCACAAAT-TAGGGGTATTTT-G
1 TAATTTTACAAATCGA-GGGTATTTTGG
* *
37109607 TAATTTCACAAATCAAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
37109634 TAATT
1 TAATT
37109639 CTACCCTATA
Statistics
Matches: 205, Mismatches: 37, Indels: 12
0.81 0.15 0.05
Matches are distributed among these distances:
26 25 0.12
27 158 0.77
28 22 0.11
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTTGG
Found at i:37109678 original size:27 final size:26
Alignment explanation
Indices: 37109462--37109678 Score: 179
Period size: 27 Copynumber: 8.1 Consensus size: 26
37109452 TGCAAATTGA
*
37109462 GGGTATTTTGGTTATTTCACAAATCAG
1 GGGTATTTTGGTAATTTCAC-AATCAG
*
37109489 GGGTATTTTGGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTCAC-AATCAG
* * * *
37109516 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTCA-CAATCAG
* *
37109543 AGGTATTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTCACAA-TCAG
** *
37109569 AGGGTATTTCAGTAATTTCACAAATTAG
1 -GGGTATTTTGGTAATTTCAC-AATCAG
*
37109597 GGGTATTTT-GTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTCAC-AATCAG
* *
37109623 GGGTATTTTGGTAATTCTACCCTAT-AG
1 GGGTATTTTGGTAATT-T-CACAATCAG
**
37109650 GGGTATTTCAGTAATTTCACAATCGAG
1 GGGTATTTTGGTAATTTCACAATC-AG
37109677 GG
1 GG
37109679 TAAAACGGTA
Statistics
Matches: 156, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
25 4 0.03
26 27 0.17
27 117 0.75
28 6 0.04
29 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTCACAATCAG
Found at i:37109689 original size:26 final size:26
Alignment explanation
Indices: 37109658--37109739 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 26
37109648 AGGGGTATTT
37109658 CAGTAATTT-CACAATCGAGGGTAAAA
1 CAGTAATTTGCA-AATCGAGGGTAAAA
* *
37109684 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAA-TTTGCAAATCGAGGGTAAAA
*
37109711 CAGTAATTCTGTAAATC-AGGGGTAAAA
1 CAGTAATT-TGCAAATCGA-GGGTAAAA
37109738 CA
1 CA
37109740 ATGATTCTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
26 8 0.16
27 40 0.82
28 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (26 bp):
CAGTAATTTGCAAATCGAGGGTAAAA
Found at i:37109700 original size:27 final size:27
Alignment explanation
Indices: 37109670--37109761 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
37109660 GTAATTTCAC
* *
37109670 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
37109697 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * *
37109724 AATC-AGGGGTAAAACAATGATTCTATA
1 AATCGA-GGGTAAAACAGTAATTCTGTA
*
37109751 AATTGAGGGTA
1 AATCGAGGGTA
37109762 CTCGAGGGCA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 55 0.96
28 1 0.02
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:37113297 original size:29 final size:29
Alignment explanation
Indices: 37113258--37113332 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
37113248 GGTTGAGAGA
* *
37113258 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
37113287 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
37113316 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
37113333 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:37115683 original size:27 final size:27
Alignment explanation
Indices: 37115515--37115676 Score: 216
Period size: 27 Copynumber: 6.0 Consensus size: 27
37115505 GGGACAAAAT
* * *
37115515 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37115542 GGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37115569 GGTATTTCTGCCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37115596 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37115623 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
37115650 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37115677 AATAATTTTG
Statistics
Matches: 118, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:37115764 original size:55 final size:54
Alignment explanation
Indices: 37115705--37115847 Score: 130
Period size: 54 Copynumber: 2.6 Consensus size: 54
37115695 GGGTAGAACG
*
37115705 GTAATTCTGCAAA-TCCAGGATACTTTGGTAATTTTTACAAATC-GAGGGTATTTCA
1 GTAATTCTGCAAACT-CAGGATACTTTGGTAA-TTTCACAAATCAG-GGGTATTTCA
* * * * **
37115760 GTAATTTTGCAAACTGAGGGTATTTTGGTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTCTGCAAACTCAGGATACTTTGGTAATTTCACAAATCAGGGGTATTTCA
* * * *
37115814 GTAATTTTACAAACT-AGGGGTATTTTGGTAATTT
1 GTAATTCTGCAAACTCA-GGATACTTTGGTAATTT
37115848 TGTGAACCAA
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
53 1 0.01
54 49 0.64
55 26 0.34
56 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
GTAATTCTGCAAACTCAGGATACTTTGGTAATTTCACAAATCAGGGGTATTTCA
Found at i:37115778 original size:27 final size:27
Alignment explanation
Indices: 37115728--37115980 Score: 196
Period size: 27 Copynumber: 9.4 Consensus size: 27
37115718 TCCAGGATAC
37115728 TTTGGTAATTTTTACAAA-TCGAGGGTAT
1 TTTGGTAA-TTTTACAAACT-GAGGGTAT
** *
37115756 TTCAGTAATTTTGCAAACTGAGGGTAT
1 TTTGGTAATTTTACAAACTGAGGGTAT
* *
37115783 TTTGGTAATTTCACAAA-TCAGGGGTAT
1 TTTGGTAATTTTACAAACTGA-GGGTAT
37115810 TTTGGTAATTTTACAAACT-AGGGGTAT
1 TTTGGTAATTTTACAAACTGA-GGGTAT
*** **
37115837 TTTGGTAATTTTGTGAACCAAGGGTAT
1 TTTGGTAATTTTACAAACTGAGGGTAT
*
37115864 TTTGGTAATTTTAC-AAGTCGAGGGTAT
1 TTTGGTAATTTTACAAACT-GAGGGTAT
*** * *
37115891 TTCAATAATTTCACAAA-TCAGGGTAT
1 TTTGGTAATTTTACAAACTGAGGGTAT
* * *
37115917 TTTGGTAATTTCACTAA-TTAGGGGTAT
1 TTTGGTAATTTTACAAACTGA-GGGTAT
* * *
37115944 TTTGGTAATTTCACTAA-TCAGGGGTAT
1 TTTGGTAATTTTACAAACTGA-GGGTAT
37115971 TTTGGTAATT
1 TTTGGTAATT
37115981 CTACCCTATA
Statistics
Matches: 189, Mismatches: 29, Indels: 15
0.81 0.12 0.06
Matches are distributed among these distances:
26 26 0.14
27 152 0.80
28 11 0.06
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
TTTGGTAATTTTACAAACTGAGGGTAT
Found at i:37115820 original size:54 final size:55
Alignment explanation
Indices: 37115728--37116013 Score: 275
Period size: 54 Copynumber: 5.3 Consensus size: 55
37115718 TCCAGGATAC
* ** *
37115728 TTTGGTAATTTTTACAAATC-GAGGGTATTTCAGTAATTTTGCAAACTGA-GGGTAT
1 TTTGGTAA-TTTCACAAATCAG-GGGTATTTTGGTAATTTTACAAACTGAGGGGTAT
37115783 TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACT-AGGGGTAT
1 TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTGAGGGGTAT
**** * * *
37115837 TTTGGTAATTTTGTGAACCAAGGGTATTTTGGTAATTTTAC-AAGTCGA-GGGTAT
1 TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACT-GAGGGGTAT
*** * * *
37115891 TTCAATAATTTCACAAATCA-GGGTATTTTGGTAATTTCACTAA-TTAGGGGTAT
1 TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTGAGGGGTAT
* * * *
37115944 TTTGGTAATTTCACTAATCAGGGGTATTTTGGTAATTCTAC--CCTATAGGGGTAT
1 TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACT-GAGGGGTAT
*
37115998 TTTAGTAATTTCACAA
1 TTTGGTAATTTCACAA
37116014 TCGAGGGTAA
Statistics
Matches: 192, Mismatches: 30, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 47 0.24
54 134 0.70
55 10 0.05
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (55 bp):
TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTGAGGGGTAT
Found at i:37115861 original size:81 final size:79
Alignment explanation
Indices: 37115728--37116008 Score: 278
Period size: 81 Copynumber: 3.5 Consensus size: 79
37115718 TCCAGGATAC
* * * *
37115728 TTTGGTAATTTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTTGGTAATT
1 TTTGGTAA-TTTTACAAATAG-GGGTATTTTAGTAATTTTG-TAACTAAGGGTATTTTGGTAATT
37115793 TCACAAATCAGGGGTAT
63 TCACAAATCAGGGGTAT
* *
37115810 TTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTGAACCAAGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAA-TAGGGGTATTTTAGTAATTTTGT-AACTAAGGGTATTTTGGTAATTT
* *
37115875 TACAAGTC-GAGGGTAT
64 CACAAATCAG-GGGTAT
*** * * ** * *
37115891 TTCAATAATTTCACAAATCA-GGGTATTTTGGTAATTTCACTAATTAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAAT-AGGGGTATTTTAGTAATTT-TGTAACTAAGGGTATTTTGGTAATTT
*
37115955 CACTAATCAGGGGTAT
64 CACAAATCAGGGGTAT
* **
37115971 TTTGGTAATTCTACCCTATAGGGGTATTTTAGTAATTT
1 TTTGGTAATTTTA-CAAATAGGGGTATTTTAGTAATTT
37116009 CACAATCGAG
Statistics
Matches: 163, Mismatches: 28, Indels: 17
0.78 0.13 0.08
Matches are distributed among these distances:
80 59 0.36
81 94 0.58
82 10 0.06
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (79 bp):
TTTGGTAATTTTACAAATAGGGGTATTTTAGTAATTTTGTAACTAAGGGTATTTTGGTAATTTCA
CAAATCAGGGGTAT
Found at i:37116020 original size:27 final size:26
Alignment explanation
Indices: 37115777--37116020 Score: 233
Period size: 27 Copynumber: 9.1 Consensus size: 26
37115767 TGCAAACTGA
37115777 GGGTATTTTGGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTCAC-AATCAG
* *
37115804 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTCACAATC-AG
*** * *
37115831 GGGTATTTTGGTAATTTTGTGAACCAA
1 GGGTATTTTGGTAA-TTTCACAATCAG
*
37115858 GGGTATTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTCACAA-TCAG
***
37115884 AGGGTATTTCAATAATTTCACAAATCA-
1 -GGGTATTTTGGTAATTTCAC-AATCAG
*
37115911 GGGTATTTTGGTAATTTCACTAATTAG
1 GGGTATTTTGGTAATTTCAC-AATCAG
37115938 GGGTATTTTGGTAATTTCACTAATCAG
1 GGGTATTTTGGTAATTTCAC-AATCAG
* *
37115965 GGGTATTTTGGTAATTCTACCCTAT-AG
1 GGGTATTTTGGTAATT-T-CACAATCAG
*
37115992 GGGTATTTTAGTAATTTCACAATCGAG
1 GGGTATTTTGGTAATTTCACAATC-AG
37116019 GG
1 GG
37116021 TAAAATGGTA
Statistics
Matches: 179, Mismatches: 27, Indels: 22
0.79 0.12 0.10
Matches are distributed among these distances:
25 4 0.02
26 30 0.17
27 132 0.74
28 11 0.06
29 2 0.01
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTCACAATCAG
Found at i:37116031 original size:26 final size:26
Alignment explanation
Indices: 37116000--37116079 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
37115990 AGGGGTATTT
37116000 TAGTAATTT-CACAATCGAGGGTAAAA
1 TAGTAATTTGCA-AATCGAGGGTAAAA
* *
37116026 TGGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAA-TTTGCAAATCGAGGGTAAAA
* *
37116053 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATT-TGCAAATCGAGGGTAAAA
37116080 CAGTGATTCT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 7 0.15
27 39 0.83
28 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (26 bp):
TAGTAATTTGCAAATCGAGGGTAAAA
Found at i:37116034 original size:107 final size:107
Alignment explanation
Indices: 37115775--37116022 Score: 306
Period size: 107 Copynumber: 2.3 Consensus size: 107
37115765 TTTGCAAACT
* *
37115775 GAGGGTATTTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 GAGGGTATTTTAGTAATTTCACAAATCA-GGGTATTTTGGTAATTTCACAAACTAGGGGTATTTT
** * *
37115840 GGTAATTTTGTGAACCAAGGGTATTTTGGTAATTTTACAAGTC
65 GGTAATTTACTGAACCAAGGGTATTTTGGTAATTCTACAAGTA
* * * *
37115883 GAGGGTATTTCAATAATTTCACAAATCAGGGTATTTTGGTAATTTCACTAATTAGGGGTATTTTG
1 GAGGGTATTTTAGTAATTTCACAAATCAGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTG
* * *
37115948 GTAATTTCACT-AATCAGGGGTATTTTGGTAATTCTACCCTA-TA
66 GTAATTT-ACTGAACCAAGGGTATTTTGGTAATTCTA--CAAGTA
37115991 G-GGGTATTTTAGTAATTTCAC-AATCGAGGGTA
1 GAGGGTATTTTAGTAATTTCACAAATC-AGGGTA
37116023 AAATGGTAAT
Statistics
Matches: 121, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
106 4 0.03
107 87 0.72
108 28 0.23
109 2 0.02
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (107 bp):
GAGGGTATTTTAGTAATTTCACAAATCAGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTG
GTAATTTACTGAACCAAGGGTATTTTGGTAATTCTACAAGTA
Found at i:37116042 original size:27 final size:27
Alignment explanation
Indices: 37116012--37116095 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
37116002 GTAATTTCAC
* *
37116012 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
37116039 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
* * * *
37116066 AATCAAGGGTAAAACAGTGATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTGTA
37116093 AAT
1 AAT
37116096 TGAAGGTACT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTGTA
Found at i:37117585 original size:8 final size:8
Alignment explanation
Indices: 37117553--37117582 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
37117543 CCCAATTTCG
37117553 AAAAAAGA
1 AAAAAAGA
37117561 AAAAAAGA
1 AAAAAAGA
*
37117569 AAAAAATA
1 AAAAAAGA
37117577 AAAAAA
1 AAAAAA
37117583 TAACAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (8 bp):
AAAAAAGA
Found at i:37118843 original size:27 final size:27
Alignment explanation
Indices: 37118756--37118836 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
37118746 GGGGAAAAAT
* * * *
37118756 GGTAATTTTACCCCACAATGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37118783 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37118810 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37118837 AATAATTTTG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:37118918 original size:27 final size:25
Alignment explanation
Indices: 37118888--37119087 Score: 132
Period size: 27 Copynumber: 7.4 Consensus size: 25
37118878 TTCGGGATAC
37118888 TTTGGTAATTTTTACAAATCGAGGGTA
1 TTTGGTAA-TTTTACAAATC-AGGGTA
* *
37118915 TTTGAGTAATTTTGCAAACTAAGGGTA
1 TTTG-GTAATTTTACAAA-TCAGGGTA
* *
37118942 TTTTGGTAATTTCACAAATCAGGTGTCT
1 -TTTGGTAATTTTACAAATCAGG-GT-A
*
37118970 TTTGGTAATTTTACAAA-CTAGGGGTGT
1 TTTGGTAATTTTACAAATC-A-GGGT-A
** *
37118997 TTTGGTAATTTTGTAAACTAAGGGTA
1 TTTGGTAATTTTACAAA-TCAGGGTA
* *
37119023 TTTTAGTAATTTTACAAGTCGAGGGTA
1 -TTTGGTAATTTTACAAATC-AGGGTA
* * *
37119050 TTTCAGTAATTTCACAAATCAGGGGCA
1 TTT-GGTAATTTTACAAATCA-GGGTA
37119077 TTTTGGTAATT
1 -TTTGGTAATT
37119088 CTACCCTATA
Statistics
Matches: 138, Mismatches: 21, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
26 10 0.07
27 113 0.82
28 15 0.11
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (25 bp):
TTTGGTAATTTTACAAATCAGGGTA
Found at i:37118980 original size:54 final size:53
Alignment explanation
Indices: 37118888--37119087 Score: 179
Period size: 54 Copynumber: 3.7 Consensus size: 53
37118878 TTCGGGATAC
* * *
37118888 TTTGGTAATTTTTACAAATCGAGGGT-ATTTGAGTAATTTTGCAAACTAAGGGTAT
1 TTTGGTAA-TTTCACAAATC-AGGGTCTTTTG-GTAATTTTACAAACTAAGGGTAT
* *
37118943 TTTGGTAATTTCACAAATCAGGTGTCTTTTGGTAATTTTACAAACTAGGGGTGT
1 TTTGGTAATTTCACAAATCAGG-GTCTTTTGGTAATTTTACAAACTAAGGGTAT
*** * * * * *
37118997 TTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTTAC-AAGTCGAGGGTAT
1 TTTGGTAATTTCACAAA-TCAGGGTCTTTTGGTAATTTTACAAACT-AAGGGTAT
** *
37119051 TTCAGTAATTTCACAAATCAGGGGCATTTTGGTAATT
1 TTTGGTAATTTCACAAATCAGGGTC-TTTTGGTAATT
37119088 CTACCCTATA
Statistics
Matches: 116, Mismatches: 24, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
53 11 0.09
54 89 0.77
55 16 0.14
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
TTTGGTAATTTCACAAATCAGGGTCTTTTGGTAATTTTACAAACTAAGGGTAT
Found at i:37119015 original size:81 final size:79
Alignment explanation
Indices: 37118888--37119129 Score: 231
Period size: 81 Copynumber: 3.0 Consensus size: 79
37118878 TTCGGGATAC
* * *
37118888 TTTGGTAATTTTTACAAATCGAGGGTATTTGAGTAATTTTGCAAACTAAGGGTATTTTGGTAATT
1 TTTGGTAA-TTTTACAAATAG-GGGTTTTTG-GTAATTTTGCAAACTAAGGGTATTTTAGTAATT
*
37118953 TCACAAATC-AGGTGTCT
63 TCACAAATCGAGG-GTAT
*
37118970 TTTGGTAATTTTACAAACTAGGGGTGTTTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAATTT
1 TTTGGTAATTTTACAAA-TAGGGGT-TTTTGGTAATTTTGCAAACTAAGGGTATTTTAGTAATTT
* *
37119035 TACAAGTCGAGGGTAT
64 CACAAATCGAGGGTAT
** * * * ** *
37119051 TTCAGTAATTTCACAAATCAGGGGCATTTTGGTAATTCT--ACCCTATAGGGGTATTTCAGTAAT
1 TTTGGTAATTTTACAAAT-AGGGG-TTTTTGGTAATTTTGCAAACTA-A-GGGTATTTTAGTAAT
37119114 TTCAC-AATCGAGGGTA
62 TTCACAAATCGAGGGTA
37119130 AAACAGTAAT
Statistics
Matches: 136, Mismatches: 17, Indels: 16
0.80 0.10 0.09
Matches are distributed among these distances:
79 4 0.03
80 12 0.09
81 103 0.76
82 17 0.12
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (79 bp):
TTTGGTAATTTTACAAATAGGGGTTTTTGGTAATTTTGCAAACTAAGGGTATTTTAGTAATTTCA
CAAATCGAGGGTAT
Found at i:37119127 original size:27 final size:26
Alignment explanation
Indices: 37119018--37119127 Score: 89
Period size: 27 Copynumber: 4.1 Consensus size: 26
37119008 TGTAAACTAA
* *
37119018 GGGTATTTTAGTAATTTTACAAGTC-G
1 GGGTATTTCAGTAATTTCACAA-TCAG
37119044 AGGGTATTTCAGTAATTTCACAAATCAG
1 -GGGTATTTCAGTAATTTCAC-AATCAG
* ** * *
37119072 GGGCATTTTGGTAATTCTACCCTAT-AG
1 GGGTATTTCAGTAATT-T-CACAATCAG
37119099 GGGTATTTCAGTAATTTCACAATCGAG
1 GGGTATTTCAGTAATTTCACAATC-AG
37119126 GG
1 GG
37119128 TAAAACAGTA
Statistics
Matches: 65, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
25 4 0.06
26 1 0.02
27 52 0.80
28 6 0.09
29 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (26 bp):
GGGTATTTCAGTAATTTCACAATCAG
Found at i:37119149 original size:27 final size:27
Alignment explanation
Indices: 37119119--37119237 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
37119109 GTAATTTCAC
* *
37119119 AATCGAGGGTAAAACAGTAATTTTTTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
37119146 AATCGATGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
37119173 AATCGATGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * * *
37119200 AATCAAGGGTAAAACAGTGATTTTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
37119227 AATTGAGGGTA
1 AATCGAGGGTA
37119238 CTTTGGTAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:37120851 original size:44 final size:44
Alignment explanation
Indices: 37120793--37120880 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
37120783 TATATACGAG
* *
37120793 GCATCTGAGCTCGTTCAGTTAGTCCGAGTTCACT-ATGGATGCGA
1 GCATCTGAACTCGTTCAATTAGTCCGAGTTCA-TAATGGATGCGA
* *
37120837 GCATCTGAACTCGTTGAATTGGTCCGAGTTCATAATGGATGCGA
1 GCATCTGAACTCGTTCAATTAGTCCGAGTTCATAATGGATGCGA
37120881 TACATGTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 1 0.03
44 38 0.97
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (44 bp):
GCATCTGAACTCGTTCAATTAGTCCGAGTTCATAATGGATGCGA
Found at i:37127340 original size:38 final size:39
Alignment explanation
Indices: 37127288--37127430 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
37127278 GAATGTTCGA
37127288 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
37127327 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
37127365 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
37127404 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
37127431 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:37127376 original size:77 final size:79
Alignment explanation
Indices: 37127289--37127470 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
37127279 AATGTTCGAG
37127289 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
37127352 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
37127366 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
37127431 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
37127445 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
37127471 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:37135338 original size:39 final size:39
Alignment explanation
Indices: 37135284--37135427 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
37135274 GAATGTTCGA
37135284 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
37135323 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
37135362 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
37135401 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
37135428 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:37135374 original size:78 final size:79
Alignment explanation
Indices: 37135285--37135467 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
37135275 AATGTTCGAG
37135285 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
37135349 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
37135363 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
37135428 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
37135442 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
37135468 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:37156530 original size:41 final size:41
Alignment explanation
Indices: 37156485--37156602 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
37156475 TGAAAGATAA
37156485 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
37156526 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37156556 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37156597 ATGTAG
1 ATGTAG
37156603 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:37156541 original size:71 final size:71
Alignment explanation
Indices: 37156453--37156616 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37156443 GAGATGTATC
37156453 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37156518 AGGACA
66 AGGACA
37156524 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37156589 AGGACA
66 AGGACA
37156595 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37156617 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:37164636 original size:38 final size:39
Alignment explanation
Indices: 37164540--37164690 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
37164530 AATGTTCGAG
37164540 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
37164579 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
37164618 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
37164656 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
37164691 GGTTACCATA
Statistics
Matches: 105, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
38 36 0.34
39 52 0.50
40 17 0.16
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:37164636 original size:77 final size:79
Alignment explanation
Indices: 37164540--37164690 Score: 243
Period size: 77 Copynumber: 1.9 Consensus size: 79
37164530 AATGTTCGAG
37164540 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGTCCCGAAGGC
37164604 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* * * *
37164618 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGTCCCGAAGGC
*
37164682 ATTTGTGCG
66 AATTGTGCG
37164691 GGTTACCATA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
77 45 0.67
78 22 0.33
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:37185310 original size:60 final size:60
Alignment explanation
Indices: 37185196--37185380 Score: 174
Period size: 60 Copynumber: 2.9 Consensus size: 60
37185186 AATTTCTAGT
* * * ** *
37185196 CCCAAATTTTAAACCGTAGTTTTAAAAAAAA-TCCCTTTTCAAATTTTTATTATTTTTGTTTA
1 CCCAAATTATAAACCGTA-ATTAAAAAAAAACT-TTTTTTCAAA-TTTTAATATTTTTGTTTA
* *
37185258 CCCAAATTATAAACCGTAATTAAAAAAAAACTTTTTTTCAAATTTTAATATTTTCGTTTC
1 CCCAAATTATAAACCGTAATTAAAAAAAAACTTTTTTTCAAATTTTAATATTTTTGTTTA
* *
37185318 CCCAAACTATAAACCGTAGTTAAAAAATTAACCCATTCTTCTTTTTCAAATTTTAATATTTTT
1 CCCAAATTATAAACCGTAATTAAAAAA--AA---A--CTT-TTTTTCAAATTTTAATATTTTT
37185381 TATTTTAATT
Statistics
Matches: 103, Mismatches: 11, Indels: 12
0.82 0.09 0.10
Matches are distributed among these distances:
60 40 0.39
61 18 0.17
62 20 0.19
65 1 0.01
67 3 0.03
68 21 0.20
ACGTcount: A:0.37, C:0.16, G:0.04, T:0.43
Consensus pattern (60 bp):
CCCAAATTATAAACCGTAATTAAAAAAAAACTTTTTTTCAAATTTTAATATTTTTGTTTA
Found at i:37185344 original size:61 final size:61
Alignment explanation
Indices: 37185196--37185344 Score: 185
Period size: 60 Copynumber: 2.4 Consensus size: 61
37185186 AATTTCTAGT
* * * *
37185196 CCCAAATTTTAAACCGTAGTTTTAAAAAAAATCCCTTTTCAAATTTTTATTATTTTTGTTTA
1 CCCAAATTATAAACCGTAG-TTAAAAAAAAATCCCTTTTCAAATTTTTAATATTTTCGTTTA
* ** *
37185258 CCCAAATTATAAACCGTAATTAAAAAAAAA-CTTTTTTTCAAA-TTTTAATATTTTCGTTTC
1 CCCAAATTATAAACCGTAGTTAAAAAAAAATC-CCTTTTCAAATTTTTAATATTTTCGTTTA
*
37185318 CCCAAACTATAAACCGTAGTTAAAAAA
1 CCCAAATTATAAACCGTAGTTAAAAAA
37185345 TTAACCCATT
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
60 41 0.54
61 18 0.24
62 17 0.22
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.40
Consensus pattern (61 bp):
CCCAAATTATAAACCGTAGTTAAAAAAAAATCCCTTTTCAAATTTTTAATATTTTCGTTTA
Found at i:37186406 original size:40 final size:40
Alignment explanation
Indices: 37186292--37186463 Score: 179
Period size: 40 Copynumber: 4.3 Consensus size: 40
37186282 GATAACCGGA
* *
37186292 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCTGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCTGGG
* * * * * *
37186332 CTATGTCTCGAAGGCATTTATGCTAG-TGATTATATCTGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCTGGG
* * * *
37186372 CGAAGACCCGAAGGCATTTGTGTGAGTTGCTATATCCGAG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCTGGG
* *
37186412 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC-CGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCTGGG
37186451 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
37186464 ATACTTGGGT
Statistics
Matches: 106, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.13
40 89 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCTGGG
Found at i:37186445 original size:80 final size:80
Alignment explanation
Indices: 37186294--37186447 Score: 202
Period size: 80 Copynumber: 1.9 Consensus size: 80
37186284 TAACCGGACT
* * * * * * *
37186294 AAGATCCGAAGGCATTCGTGCGAGTTGCTATATCTGGGCTATGTCTCGAAGGCATTTATGCTAGT
1 AAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGAGCTAAGACCCGAAGGCATTTATGCGAGT
37186359 GATTATATCTGGGCG
66 GATTATATCTGGGCG
* * *
37186374 AAGACCCGAAGGCATTTGTGTGAGTTGCTATATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGT
1 AAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGAGCTAAGACCCGAAGGCATTTATGCGAG-
37186439 TG-TTATATC
65 TGATTATATC
37186448 CGGCTAAATC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 61 0.97
81 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (80 bp):
AAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGAGCTAAGACCCGAAGGCATTTATGCGAGT
GATTATATCTGGGCG
Found at i:37186731 original size:22 final size:22
Alignment explanation
Indices: 37186691--37186732 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37186681 GAATGTGCAT
*
37186691 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
37186713 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
37186733 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:37193165 original size:40 final size:40
Alignment explanation
Indices: 37193091--37193262 Score: 233
Period size: 40 Copynumber: 4.3 Consensus size: 40
37193081 GATAACCAGA
* * *
37193091 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
* * * *
37193131 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGG
*
37193171 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
37193211 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
37193250 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
37193263 ATACTTGGGT
Statistics
Matches: 116, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 98 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
Found at i:37193529 original size:22 final size:22
Alignment explanation
Indices: 37193489--37193530 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37193479 GAATGTGCAT
*
37193489 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
37193511 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
37193531 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:37193826 original size:2 final size:2
Alignment explanation
Indices: 37193819--37193855 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
37193809 AATCATTTTG
37193819 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37193856 GGTTATTGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:37202568 original size:43 final size:43
Alignment explanation
Indices: 37202507--37202592 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
37202497 AATCTTATCG
37202507 GTGAATAGGTTCGGATAACGCTTTCTCATAGCATCCTCTGACT
1 GTGAATAGGTTCGGATAACGCTTTCTCATAGCATCCTCTGACT
*
37202550 GTGAATAGGTTCGGATAACGCTTTCTTATAGCATCCTCTGACT
1 GTGAATAGGTTCGGATAACGCTTTCTCATAGCATCCTCTGACT
37202593 CCGATGTTGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (43 bp):
GTGAATAGGTTCGGATAACGCTTTCTCATAGCATCCTCTGACT
Found at i:37205195 original size:40 final size:40
Alignment explanation
Indices: 37205137--37205339 Score: 257
Period size: 40 Copynumber: 5.1 Consensus size: 40
37205127 GGATGATAAT
* *
37205137 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTA-TATC
* *
37205177 CGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATC
* *
37205217 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATC
* ***
37205257 CGAGCTAAGTCCCGAAGGCATTCATGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATC
* * *
37205297 CGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTA-CTATATC
37205337 CGG
1 CGG
37205340 TTAAATCTCG
Statistics
Matches: 149, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
39 3 0.02
40 146 0.98
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATC
Found at i:37210760 original size:26 final size:25
Alignment explanation
Indices: 37210711--37210760 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
37210701 TAAACAAATC
* * *
37210711 AATTATTAATATGAATAGTCGATTT
1 AATTATTAACATCAATAGCCGATTT
37210736 AATTATTAACATCACATAGCCGATT
1 AATTATTAACATCA-ATAGCCGATT
37210761 GTAACTTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (25 bp):
AATTATTAACATCAATAGCCGATTT
Found at i:37216067 original size:22 final size:22
Alignment explanation
Indices: 37216016--37216067 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
37216006 AAGGTCATAC
37216016 GCCCGTGTAGACACAGGGACAT
1 GCCCGTGTAGACACAGGGACAT
* *
37216038 GCCAGTGTGGACACAGGGACACT
1 GCCCGTGTAGACACAGGGACA-T
37216061 -CCCGTGT
1 GCCCGTGT
37216068 CTTCAGGTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.23, C:0.29, G:0.33, T:0.15
Consensus pattern (22 bp):
GCCCGTGTAGACACAGGGACAT
Found at i:37217175 original size:25 final size:26
Alignment explanation
Indices: 37217134--37217186 Score: 99
Period size: 25 Copynumber: 2.1 Consensus size: 26
37217124 TACATCTCAA
37217134 AAGTATAAAAATAACAAAACATGAAG
1 AAGTATAAAAATAACAAAACATGAAG
37217160 AAGTAT-AAAATAACAAAACATGAAG
1 AAGTATAAAAATAACAAAACATGAAG
37217185 AA
1 AA
37217187 AACTCTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.66, C:0.08, G:0.11, T:0.15
Consensus pattern (26 bp):
AAGTATAAAAATAACAAAACATGAAG
Found at i:37219530 original size:6 final size:6
Alignment explanation
Indices: 37219502--37219571 Score: 79
Period size: 6 Copynumber: 11.7 Consensus size: 6
37219492 TATGTCTTTC
* * *
37219502 AAAAT- AAAATA ATAAATT GAAATG AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA A-AAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
37219550 AGAATA AAAATA AGAATA AAAA
1 AAAATA AAAATA AAAATA AAAA
37219572 AAAGATAGGA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
5 5 0.09
6 45 0.83
7 4 0.07
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:37219536 original size:12 final size:12
Alignment explanation
Indices: 37219528--37219576 Score: 80
Period size: 12 Copynumber: 4.1 Consensus size: 12
37219518 TTGAAATGAA
*
37219528 AATAAAAATAAA
1 AATAAAAATAAG
37219540 AATAAAAATAAG
1 AATAAAAATAAG
37219552 AATAAAAATAAG
1 AATAAAAATAAG
*
37219564 AATAAAAAAAAG
1 AATAAAAATAAG
37219576 A
1 A
37219577 TAGGAGGATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (12 bp):
AATAAAAATAAG
Found at i:37224118 original size:46 final size:44
Alignment explanation
Indices: 37223975--37224118 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
37223965 CCTGCCCATA
* *
37223975 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
37224024 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
*
37224067 AAGTGAAGTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
37224114 AGTGA
1 AGTGA
37224119 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.42
47 28 0.37
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:37226528 original size:30 final size:30
Alignment explanation
Indices: 37226493--37226572 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
37226483 CAAGAAAAAC
*
37226493 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* * *
37226523 GAATAAAGAGATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
* *
37226553 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
37226573 CGATACTATG
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
29 2 0.05
30 37 0.90
31 2 0.05
ACGTcount: A:0.55, C:0.15, G:0.19, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:37226540 original size:15 final size:15
Alignment explanation
Indices: 37226493--37226563 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
37226483 CAAGAAAAAC
37226493 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
37226508 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
*
37226523 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
37226538 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
37226553 GGATAAAGAAA
1 GAATAAAGAAA
37226564 CCCAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.56, C:0.13, G:0.20, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:37226572 original size:15 final size:15
Alignment explanation
Indices: 37226495--37226572 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
37226485 AGAAAAACGA
37226495 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
37226510 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
*
37226524 AATAAAGAGATCC-AG
1 -ATAAAGAAATCCAAG
* *
37226539 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37226555 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37226570 ATA
1 ATA
37226573 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37238625 original size:31 final size:31
Alignment explanation
Indices: 37238584--37238647 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
37238574 CCTTTTAATA
*
37238584 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
37238615 TTTCAAATTTCATATTATTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
37238646 TT
1 TT
37238648 ACGATAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:37238893 original size:24 final size:24
Alignment explanation
Indices: 37238841--37239054 Score: 308
Period size: 24 Copynumber: 9.0 Consensus size: 24
37238831 GCTTTATCAT
* *
37238841 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
37238866 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
*
37238890 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
37238913 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
37238937 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
37238961 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
37238985 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
37239009 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
37239032 ATAACTGGGGCATAAGCCATTTT
1 ATAACTGGGGCATAAGCCCTTTT
37239055 TCACTTCCTC
Statistics
Matches: 174, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
23 41 0.24
24 121 0.70
25 12 0.07
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:37239127 original size:9 final size:9
Alignment explanation
Indices: 37239113--37239169 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
37239103 ATCTCGTGTG
37239113 CATATCATA
1 CATATCATA
*
37239122 CATATCATGTG
1 CATATCA--TA
37239133 CATATCATA
1 CATATCATA
* *
37239142 CATGTCATGTG
1 CATATCA--TA
37239153 CATATCATA
1 CATATCATA
37239162 CATATCAT
1 CATATCAT
37239170 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:37239132 original size:20 final size:20
Alignment explanation
Indices: 37239109--37239171 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
37239099 GAACATCTCG
37239109 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
37239129 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
37239149 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
37239169 TGT
1 TGT
37239172 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:37239254 original size:25 final size:25
Alignment explanation
Indices: 37239208--37239255 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37239198 ATATATAAAC
* * *
37239208 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGTAAAACGGTCATTTTTA
37239233 CCTAGGGGTAAAACGGTCATTTT
1 CCTAGGGGTAAAACGGTCATTTT
37239256 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
CCTAGGGGTAAAACGGTCATTTTTA
Found at i:37240513 original size:27 final size:27
Alignment explanation
Indices: 37240492--37240833 Score: 291
Period size: 27 Copynumber: 12.7 Consensus size: 27
37240482 AAGGGTATTT
*
37240492 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
37240519 TAGTAATTCTGTAAATCAAGGGTGAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
37240546 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
37240573 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
37240600 CGGTAATTCTGTAAATCGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
37240627 -CGATAATTATGTAAATCGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* * *
37240654 TGGTAATTATGTAAAT-TAGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
** * * *
37240681 CGGTAATTCTATAAATCAAAGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
37240708 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
** *
37240735 CGGTAATTCTGTAAATAGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
37240762 CGGTAATT-T-TACGAATTGAAGGTAAAA
1 TAGTAATTCTGTA--AATCGAGGGTAAAA
** * *
37240789 CGGTAATTCTAT-AACCTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
37240816 CGGTAATTCTGTAAATCG
1 TAGTAATTCTGTAAATCG
37240834 GGAGTACTTT
Statistics
Matches: 266, Mismatches: 37, Indels: 24
0.81 0.11 0.07
Matches are distributed among these distances:
25 2 0.01
26 5 0.02
27 252 0.95
28 6 0.02
29 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:37240539 original size:54 final size:54
Alignment explanation
Indices: 37240492--37240833 Score: 327
Period size: 54 Copynumber: 6.3 Consensus size: 54
37240482 AAGGGTATTT
* ** *
37240492 TAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTGAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA
* * * *
37240546 CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA
** * * * **
37240600 CGGTAATTCTGTAAATCGGGGGTAAAACGATAATTATGTAAATCGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA
* * * * *
37240654 TGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCAAAGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA
37240708 TAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAAT-AGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCA-AGGGTAAAA
** * * * * *
37240762 CGGTAATT-T-TACGAATTGAAGGTAAAACGGTAATTCTAT-AACCTGAGGGTAAAA
1 TAGTAATTCTGTA--AATCGAGGGTAAAACGGTAATTCTGTAAATC-AAGGGTAAAA
**
37240816 CGGTAATTCTGTAAATCG
1 TAGTAATTCTGTAAATCG
37240834 GGAGTACTTT
Statistics
Matches: 241, Mismatches: 36, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.01
53 4 0.02
54 231 0.96
55 2 0.01
56 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA
Found at i:37240579 original size:81 final size:82
Alignment explanation
Indices: 37240494--37240833 Score: 383
Period size: 81 Copynumber: 4.2 Consensus size: 82
37240484 GGGTATTTTA
* ** *
37240494 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTGAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
*
37240559 AATC-GAGGGTAAAATG
66 AATCTGAGGGTAAAACG
** * *
37240575 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGGGGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAG-TAATTCTAT
* *
37240639 AAATC-GGGGGTAAAATG
65 AAATCTGAGGGTAAAACG
* * * * * *
37240656 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCAAAGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
37240720 AAA-CTGAGGGTAAAACG
65 AAATCTGAGGGTAAAACG
* * *
37240737 GTAATTCTGTAAATAGAGGGTAAAACGGTAATT-T-TACGAATTGAA-GGTAAAACGGTAATTCT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA--AA-TCAAGGGTAAAACAGTAATTCT
*
37240799 AT-AACCTGAGGGTAAAACG
63 ATAAATCTGAGGGTAAAACG
37240818 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
37240834 GGAGTACTTT
Statistics
Matches: 224, Mismatches: 26, Indels: 18
0.84 0.10 0.07
Matches are distributed among these distances:
79 2 0.01
80 6 0.03
81 211 0.94
82 5 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (82 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
AATCTGAGGGTAAAACG
Found at i:37242421 original size:93 final size:93
Alignment explanation
Indices: 37242309--37242480 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
37242299 GCCCATAAGT
* *
37242309 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37242374 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
37242402 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37242467 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
37242481 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37242476 original size:46 final size:46
Alignment explanation
Indices: 37242301--37242476 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
37242291 TGTAACCCGC
* * *
37242301 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
37242347 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
37242397 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
37242440 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37242477 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:37244905 original size:30 final size:30
Alignment explanation
Indices: 37244861--37244949 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
37244851 CAAAGATAAC
37244861 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
37244890 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
37244920 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
37244950 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:37244909 original size:15 final size:15
Alignment explanation
Indices: 37244861--37244940 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
37244851 CAAAGATAAC
*
37244861 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37244875 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
37244890 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
37244905 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37244920 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37244935 AAGAAA
1 AAGAAA
37244941 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37244949 original size:15 final size:15
Alignment explanation
Indices: 37244872--37244949 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
37244862 AGAAAACCGA
37244872 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
37244887 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
37244901 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
37244916 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37244932 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37244947 ATA
1 ATA
37244950 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37248001 original size:93 final size:93
Alignment explanation
Indices: 37247889--37248060 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
37247879 GCCCATAAGT
* *
37247889 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37247954 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
37247982 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37248047 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
37248061 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37248056 original size:46 final size:46
Alignment explanation
Indices: 37247881--37248056 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
37247871 TGTAACCCGC
* * *
37247881 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
37247927 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
37247977 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
37248020 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37248057 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:37248620 original size:19 final size:20
Alignment explanation
Indices: 37248596--37248635 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
37248586 TTCCCTTCTA
37248596 TGGCAACAT-AAATTCTCAC
1 TGGCAACATCAAATTCTCAC
37248615 TGGCAACATCAAATTCTCAC
1 TGGCAACATCAAATTCTCAC
37248635 T
1 T
37248636 CTAACATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.35, C:0.28, G:0.10, T:0.28
Consensus pattern (20 bp):
TGGCAACATCAAATTCTCAC
Found at i:37252075 original size:31 final size:31
Alignment explanation
Indices: 37252034--37252097 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
37252024 CCTTTTAATA
* *
37252034 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCAGAACACTGGGCCGAAGCCT
**
37252065 TTTCAAATTTCAGATTACTGGGCCGAAGCCT
1 TTTCAAATTTCAGAACACTGGGCCGAAGCCT
37252096 TT
1 TT
37252098 ACGGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.34
Consensus pattern (31 bp):
TTTCAAATTTCAGAACACTGGGCCGAAGCCT
Found at i:37252341 original size:23 final size:23
Alignment explanation
Indices: 37252311--37252476 Score: 221
Period size: 23 Copynumber: 7.1 Consensus size: 23
37252301 CCTAGCCTCT
37252311 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
37252334 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37252357 TTT--TGAAGCT-GGGCATAAGCCC
1 TTTAAT-AA-CTGGGGCATAAGCCC
*
37252379 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
37252403 TTTCGATAACTGGGGCATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
*
37252427 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
37252451 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37252474 TTT
1 TTT
37252477 TTTCACTCCT
Statistics
Matches: 131, Mismatches: 4, Indels: 16
0.87 0.03 0.11
Matches are distributed among these distances:
21 1 0.01
22 13 0.10
23 59 0.45
24 54 0.41
25 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:37252399 original size:24 final size:24
Alignment explanation
Indices: 37252290--37252477 Score: 251
Period size: 24 Copynumber: 8.0 Consensus size: 24
37252280 GCTTTATCAT
* *
37252290 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
37252315 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
37252338 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
37252362 A-AGCT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
37252384 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTG
37252408 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
37252432 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
37252455 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37252478 TTCACTCCTC
Statistics
Matches: 148, Mismatches: 10, Indels: 11
0.88 0.06 0.07
Matches are distributed among these distances:
22 17 0.11
23 49 0.33
24 70 0.47
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:37252548 original size:9 final size:9
Alignment explanation
Indices: 37252534--37252590 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
37252524 ACATCTCGTG
37252534 CATATCATA
1 CATATCATA
*
37252543 CATATCATGTG
1 CATATCA--TA
37252554 CATATCATA
1 CATATCATA
* *
37252563 CATGTCATGTG
1 CATATCA--TA
37252574 CATATCATA
1 CATATCATA
37252583 CATATCAT
1 CATATCAT
37252591 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:37252556 original size:20 final size:20
Alignment explanation
Indices: 37252531--37252592 Score: 115
Period size: 20 Copynumber: 3.1 Consensus size: 20
37252521 TGAACATCTC
37252531 GTGCATATCATACATATCAT
1 GTGCATATCATACATATCAT
*
37252551 GTGCATATCATACATGTCAT
1 GTGCATATCATACATATCAT
37252571 GTGCATATCATACATATCAT
1 GTGCATATCATACATATCAT
37252591 GT
1 GT
37252593 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (20 bp):
GTGCATATCATACATATCAT
Found at i:37252674 original size:24 final size:24
Alignment explanation
Indices: 37252629--37252674 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
37252619 ATATATAAAC
* * * *
37252629 CCTAGGGGTATAATGGTTATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
37252653 CCTAGGGGCAAAACGGTCATTT
1 CCTAGGGGCAAAACGGTCATTT
37252675 CATATATATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:37255454 original size:29 final size:29
Alignment explanation
Indices: 37255391--37255487 Score: 117
Period size: 29 Copynumber: 3.4 Consensus size: 29
37255381 TTCACATACT
* * *
37255391 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
37255419 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
37255448 TGTATATGGACCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
37255477 TTTATATGGCC
1 TGTATATGGCC
37255488 GGTTATGTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
27 1 0.02
28 17 0.29
29 39 0.67
30 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:37259188 original size:46 final size:46
Alignment explanation
Indices: 37259121--37259293 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
37259111 TGTAACCCGC
*
37259121 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
37259167 CCATAAGTGAACTCGGACTCAACTCAACGAG-TCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
37259216 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
37259259 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
37259294 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 9, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 27 0.25
46 59 0.55
47 7 0.06
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:37259239 original size:92 final size:92
Alignment explanation
Indices: 37259128--37259297 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 92
37259118 CGCCCATAAG
* *
37259128 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTC-GACTCAACTCA
37259193 ACGAG-TCGGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
*
37259220 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
37259285 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37259298 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 16 0.22
92 58 0.78
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:37271832 original size:40 final size:40
Alignment explanation
Indices: 37271736--37271959 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
37271726 AAACCAAGTA
* * *
37271736 CCTTCGGGATTTAG-CCGGATATCGCAACTCG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37271774 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
37271814 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37271854 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
*
37271897 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37271937 CCTTCAGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
37271960 CATCCGAATA
Statistics
Matches: 159, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
38 12 0.08
39 15 0.09
40 95 0.60
42 1 0.01
43 36 0.23
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37271915 original size:83 final size:80
Alignment explanation
Indices: 37271736--37271959 Score: 272
Period size: 83 Copynumber: 2.8 Consensus size: 80
37271726 AAACCAAGTA
* * * * * *
37271736 CCTTCGGGATTTAG-CCGGATATCGCAACTCG-ACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
37271799 TAACTCGCACACATG
66 AAACTCGCACAAATG
* * *
37271814 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
37271879 CAACTACTCGCACAAATG
66 -AA--ACTCGCACAAATG
* * * *
37271897 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCAGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
37271960 CATCCGAATA
Statistics
Matches: 123, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
78 12 0.10
79 12 0.10
80 30 0.24
81 1 0.01
83 68 0.55
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
AAACTCGCACAAATG
Found at i:37276105 original size:16 final size:16
Alignment explanation
Indices: 37276080--37276111 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37276070 AAGTTCTAGA
*
37276080 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
37276096 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
37276112 GAGTTACAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:37279137 original size:46 final size:46
Alignment explanation
Indices: 37279087--37279259 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
37279077 TGGTTGAGCA
37279087 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
37279133 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
37279178 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37279226 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37279260 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37279243 original size:93 final size:93
Alignment explanation
Indices: 37279084--37279254 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37279074 GGATGGTTGA
* * *
37279084 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
37279149 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
37279177 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
37279242 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37279255 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37282244 original size:15 final size:15
Alignment explanation
Indices: 37282206--37282249 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
37282196 CATAGTATCG
* *
37282206 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
37282221 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
37282236 TATCTTGGATTTCT
1 TATCTTGGATTTCT
37282250 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:37284701 original size:46 final size:46
Alignment explanation
Indices: 37284651--37284821 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
37284641 GGTTGAGCAT
37284651 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * * *
37284697 CGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* ***
37284744 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
37284790 CGAGCTTGTTGAGTTGAGTCTGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37284822 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 18, Indels: 18
0.73 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 55 0.56
47 27 0.28
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:37284762 original size:93 final size:92
Alignment explanation
Indices: 37284647--37284816 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 92
37284637 GGATGGTTGA
* ***
37284647 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTT
37284712 GAGTCTGAGTTCGTGAAATGTAACTAG
66 GAGTCTGAGTTCGTGAAATGTAACTAG
* *
37284739 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTTGTTGAGT
1 GCAT-CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
37284804 TGAGTCTGAGTTC
65 TGAGTCTGAGTTC
37284817 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (92 bp):
GCATCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTT
GAGTCTGAGTTCGTGAAATGTAACTAG
Found at i:37290746 original size:33 final size:32
Alignment explanation
Indices: 37290685--37290748 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
37290675 ACGAAGTAAC
* * *
37290685 CAGATACATATATTGTGGCTAGGTCACCAGAA
1 CAGATACATATATTGTGGCGAAGCCACCAGAA
*
37290717 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACATATAT-TGTGGCGAAGCCACCAGA
37290749 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (32 bp):
CAGATACATATATTGTGGCGAAGCCACCAGAA
Found at i:37298241 original size:27 final size:26
Alignment explanation
Indices: 37298193--37298244 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37298183 GCGAGGCTGC
*
37298193 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
37298219 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
37298245 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37298704 original size:25 final size:26
Alignment explanation
Indices: 37298666--37298718 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
37298656 TCGGTATTTC
*
37298666 GGCTTTTACTGATTCAGT-AAAGGGA
1 GGCTTTTACCGATTCAGTCAAAGGGA
*
37298691 GGCTTTTACCGATTCAGTCTAAGGGA
1 GGCTTTTACCGATTCAGTCAAAGGGA
37298717 GG
1 GG
37298719 GTGTCGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
GGCTTTTACCGATTCAGTCAAAGGGA
Found at i:37301824 original size:40 final size:40
Alignment explanation
Indices: 37301773--37302004 Score: 193
Period size: 40 Copynumber: 5.8 Consensus size: 40
37301763 GGATATAGCG
* * * *
37301773 ACTCGCTCAATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
* *
37301813 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACA-TAGCCCGG-TTATAGTA
* * * *
37301853 ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
* * * * *
37301893 ACTCGCACAAATGCCTTCGGGACTTAACTCGGTTTTGGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
* * * *
37301933 ACTCACACAAATGCCTTCCGGA-ATTGACCCGGATT-TAGTC
1 ACTCGCACAAATGCCTTCGGGACATAG-CCCGG-TTATAGTA
* * *
37301973 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCG
1 AC-TCGCACAAATGCCTTCGGGACATAGCCCG
37302005 AATACCATTC
Statistics
Matches: 160, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
39 4 0.03
40 130 0.81
41 24 0.15
42 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
Done.