Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 130 of 410
Found at i:39123558 original size:3 final size:3
Alignment explanation
Indices: 39123550--39123616 Score: 107
Period size: 3 Copynumber: 21.3 Consensus size: 3
39123540 GATTACAATG
39123550 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
39123598 ATA ATTCA AGTA ATA ATA A
1 ATA A-T-A A-TA ATA ATA A
39123617 CATAATGAAA
Statistics
Matches: 61, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
3 55 0.90
4 3 0.05
5 3 0.05
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:39124571 original size:29 final size:29
Alignment explanation
Indices: 39124486--39124600 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
39124476 TACGTGTATC
* *
39124486 TGGCCCATTAGGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * * *
39124514 TGGCCTACTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
*
39124543 TGGCCCATTAGGCCCAAATTACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * * * *
39124572 TAGTCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
39124600 T
1 T
39124601 TCATGCTCAC
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
28 24 0.35
29 45 0.65
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:39124836 original size:8 final size:8
Alignment explanation
Indices: 39124812--39124853 Score: 66
Period size: 8 Copynumber: 5.2 Consensus size: 8
39124802 TAGCCAAACC
*
39124812 TTCGGCTT
1 TTCGGCAT
*
39124820 TTTGGCAT
1 TTCGGCAT
39124828 TTCGGCAT
1 TTCGGCAT
39124836 TTCGGCAT
1 TTCGGCAT
39124844 TTCGGCAT
1 TTCGGCAT
39124852 TT
1 TT
39124854 GTCGATTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.10, C:0.21, G:0.24, T:0.45
Consensus pattern (8 bp):
TTCGGCAT
Found at i:39131123 original size:3 final size:3
Alignment explanation
Indices: 39131115--39131143 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
39131105 ACTTCTAGTG
39131115 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
39131144 TATTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:39131148 original size:3 final size:3
Alignment explanation
Indices: 39131142--39131183 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
39131132 AATAATAATA
39131142 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
39131184 CAAGTAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:39132122 original size:29 final size:28
Alignment explanation
Indices: 39132065--39132150 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
39132055 TACCTGTATT
* * *
39132065 TGGCCCATCAGGCCCAATCATATTCATA
1 TGGCTCATTAGGCCCAATCACATTCATA
* *
39132093 TGGCTTATTAGGCCCAAATCACATTTATA
1 TGGCTCATTAGGCCC-AATCACATTCATA
* *
39132122 TGGCTCGTTAGGCCCAGTCACATTCATA
1 TGGCTCATTAGGCCCAATCACATTCATA
39132150 T
1 T
39132151 TCATGCTCAC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
28 24 0.50
29 24 0.50
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (28 bp):
TGGCTCATTAGGCCCAATCACATTCATA
Found at i:39132387 original size:8 final size:8
Alignment explanation
Indices: 39132369--39132407 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
39132359 ACCTTCGGTT
*
39132369 TTTCAGCA
1 TTTCGGCA
*
39132377 TTTTGGCA
1 TTTCGGCA
39132385 TTTCGGCA
1 TTTCGGCA
39132393 TTTCGGCA
1 TTTCGGCA
39132401 TTTCGGC
1 TTTCGGC
39132408 TTTTGCCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.13, C:0.23, G:0.23, T:0.41
Consensus pattern (8 bp):
TTTCGGCA
Found at i:39132393 original size:16 final size:16
Alignment explanation
Indices: 39132369--39132412 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
39132359 ACCTTCGGTT
*
39132369 TTTCAGCATTTTGGCA
1 TTTCGGCATTTTGGCA
*
39132385 TTTCGGCATTTCGGCA
1 TTTCGGCATTTTGGCA
39132401 TTTCGGC-TTTTG
1 TTTCGGCATTTTG
39132413 CCAATTCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.45
Consensus pattern (16 bp):
TTTCGGCATTTTGGCA
Found at i:39137246 original size:27 final size:28
Alignment explanation
Indices: 39137189--39137258 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
39137179 AAATTTGTAC
**
39137189 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
39137217 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
39137244 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
39137259 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:39137267 original size:27 final size:27
Alignment explanation
Indices: 39137189--39137270 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
39137179 AAATTTGTAC
* *
39137189 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
39137217 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
39137244 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
39137271 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:39145173 original size:27 final size:28
Alignment explanation
Indices: 39145116--39145185 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
39145106 AAATTTGTAC
**
39145116 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
39145144 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
39145171 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
39145186 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:39145194 original size:27 final size:27
Alignment explanation
Indices: 39145116--39145197 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
39145106 AAATTTGTAC
* *
39145116 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
39145144 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
39145171 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
39145198 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:39150280 original size:47 final size:47
Alignment explanation
Indices: 39150221--39150342 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
39150211 GCATTGGCAC
*
39150221 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACGTGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
39150268 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
39150315 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
39150343 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:39150449 original size:55 final size:54
Alignment explanation
Indices: 39150321--39150517 Score: 254
Period size: 55 Copynumber: 3.6 Consensus size: 54
39150311 TTGGTAAGAT
* * * *
39150321 AAGGATATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
39150375 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
39150430 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
39150483 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
39150518 ATGGTAAGTT
Statistics
Matches: 125, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.26
54 41 0.33
55 43 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:39153689 original size:42 final size:42
Alignment explanation
Indices: 39153630--39153712 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
39153620 TTTCACTTTA
*
39153630 AACATATTTGCTTACCATCCTGTATATAATATAAATTCTTAG
1 AACATATTTGCTTACCATCATGTATATAATATAAATTCTTAG
* *
39153672 AACATATTTGCTTACCATCATGTATATAGTATACATTCTTA
1 AACATATTTGCTTACCATCATGTATATAATATAAATTCTTA
39153713 TATTAACTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (42 bp):
AACATATTTGCTTACCATCATGTATATAATATAAATTCTTAG
Found at i:39155253 original size:49 final size:49
Alignment explanation
Indices: 39155080--39155423 Score: 404
Period size: 49 Copynumber: 6.9 Consensus size: 49
39155070 TAGACAAGGC
* *
39155080 TATCTAGTACGCATAGTAGCCTGCACTTAGTACTACA-ATGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * *
39155128 TATCCGGTACACATAGTAGCCTGCACTTAGTACTGCACATGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* * * *
39155179 TATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * *
39155228 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-AAT
* * * * *
39155278 CATCTGATACACGTAGTAGCCTACACTTAGTACTACACACT-TGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-TGTGA-CCAA-T
* ** * *
39155329 TATCGGGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
39155378 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
39155424 TCACAATAGA
Statistics
Matches: 249, Mismatches: 39, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
48 33 0.13
49 87 0.35
50 53 0.21
51 76 0.31
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:39155258 original size:100 final size:98
Alignment explanation
Indices: 39155080--39155423 Score: 404
Period size: 100 Copynumber: 3.5 Consensus size: 98
39155070 TAGACAAGGC
* *
39155080 TATCTAGTACGCATAGTAGCCTGCACTTAGTACTACA-ATGTGACCAATTATCCGGTACACATAG
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAG
* *
39155144 TAGCCTGCACTTAGTACTGCACATGTGATCGAAGT
66 TAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* * * * * *
39155179 TATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAG
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAG
* *
39155244 TAGCCTGCACTTAGTACTACACACGTGACCTAAC
66 TAGCCTGCACTTAGTACTACACATGTGACC-AAT
* * * * * * **
39155278 CATCTGATACACGTAGTAGCCTACACTTAGTACTACACACT-TGATCGAAGTTATCGGGTATGCA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-TGTGA-CCAA-TTATCCGGTACACA
* *
39155342 TAGTAGCCTACACTTAGTACTACACATGCGACCAAT
63 TAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
39155378 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
39155424 TCACAATAGA
Statistics
Matches: 207, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
99 70 0.34
100 97 0.47
101 40 0.19
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (98 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAG
TAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:39155323 original size:150 final size:150
Alignment explanation
Indices: 39155093--39155424 Score: 535
Period size: 150 Copynumber: 2.2 Consensus size: 150
39155083 CTAGTACGCA
* ** * *
39155093 TAGTAGCCTGCACTTAGTACTACA-ATGTGACC-AATTATCCGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCCGATACACATAGTAGCCTACACTT
* * *
39155156 AGTACTGCACATGTGATCGAAGTTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGC
66 AGTACTACACATGTGATCGAAGTTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGC
39155221 GACCAATTATCTGGTACACG
131 GACCAATTATCTGGTACACG
* *
39155241 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCCGATACACATAGTAGCCTACACTT
*
39155306 AGTACTACACACT-TGATCGAAGTTATCGGGTATGCATAGTAGCCTACACTTAGTACTACACATG
66 AGTACTACACA-TGTGATCGAAGTTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATG
39155370 CGACCAATTATCTGGTACACG
130 CGACCAATTATCTGGTACACG
39155391 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
39155425 CACAATAGAT
Statistics
Matches: 170, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
148 24 0.14
149 7 0.04
150 138 0.81
151 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (150 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCCGATACACATAGTAGCCTACACTT
AGTACTACACATGTGATCGAAGTTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGC
GACCAATTATCTGGTACACG
Found at i:39161766 original size:20 final size:20
Alignment explanation
Indices: 39161741--39161788 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
39161731 GTAACATAAT
39161741 TGTTGTTTTAAGGAATTTAA
1 TGTTGTTTTAAGGAATTTAA
39161761 TGTTGTTTTAAGGAATTTAA
1 TGTTGTTTTAAGGAATTTAA
39161781 TGTTGTTT
1 TGTTGTTT
39161789 ATATGATATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (20 bp):
TGTTGTTTTAAGGAATTTAA
Found at i:39162060 original size:46 final size:45
Alignment explanation
Indices: 39162010--39162185 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
39162000 TGGTTGAGCA
39162010 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
39162056 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
39162103 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
39162149 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
39162186 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:39162166 original size:93 final size:93
Alignment explanation
Indices: 39162007--39162177 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
39161997 GGATGGTTGA
* * *
39162007 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAACTCGTTGAGT
39162072 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
39162100 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAACTCGTTGAGT
39162165 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
39162178 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:39170953 original size:42 final size:40
Alignment explanation
Indices: 39170846--39170963 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 40
39170836 GTACCAAGGC
* * *
39170846 CATATCCCAGATATGGTCTTACATGTCATCTCGTTTCGATG
1 CATATCCCAGATATGGTCTTACACGT-ATCTCATATCGATG
* *
39170887 CTAGTAGCCCAGTTATGGTCTTACACGTAGTCTCATATCGATG
1 C-A-TATCCCAGATATGGTCTTACACGTA-TCTCATATCGATG
39170930 TCATATCCCAGATATGGTCTTACACGTAATCTCA
1 -CATATCCCAGATATGGTCTTACACGT-ATCTCA
39170964 GTAACCTTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 29 0.45
43 34 0.52
44 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (40 bp):
CATATCCCAGATATGGTCTTACACGTATCTCATATCGATG
Found at i:39173071 original size:32 final size:32
Alignment explanation
Indices: 39173035--39173127 Score: 168
Period size: 32 Copynumber: 2.9 Consensus size: 32
39173025 TGTATGCATT
39173035 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
39173067 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
39173099 TTAGTATTTTAATAGTTAATGGATGATGG
1 TTAGCATTTTAATAGTTAATGGATGATGG
39173128 ACATGATAAG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:39176337 original size:12 final size:12
Alignment explanation
Indices: 39176320--39176362 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
39176310 ACTCGGGGAA
39176320 GAGGCCGTGGTC
1 GAGGCCGTGGTC
39176332 GAGGCCGTGGTC
1 GAGGCCGTGGTC
39176344 GAGGCCGTGGTC
1 GAGGCCGTGGTC
39176356 GAGGCCG
1 GAGGCCG
39176363 AGGTAGTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.09, C:0.26, G:0.51, T:0.14
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:39181235 original size:32 final size:32
Alignment explanation
Indices: 39181199--39181295 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
39181189 TGTATGCATT
39181199 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
39181231 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
39181263 TTAGTATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
39181295 T
1 T
39181296 GATAAGCATT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:39184188 original size:24 final size:24
Alignment explanation
Indices: 39184156--39184362 Score: 360
Period size: 24 Copynumber: 8.6 Consensus size: 24
39184146 TATCTCAAAT
*
39184156 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
39184180 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
39184204 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
39184228 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
39184252 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
39184276 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
39184300 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
39184324 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
39184348 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
39184363 ACATAATAAG
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 179 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:39192090 original size:24 final size:24
Alignment explanation
Indices: 39192058--39192216 Score: 264
Period size: 24 Copynumber: 6.6 Consensus size: 24
39192048 TATCTCAAAT
*
39192058 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
39192082 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
39192106 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
39192130 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
39192154 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
39192178 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
39192202 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
39192217 ACATAATAAG
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 131 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:39192229 original size:48 final size:48
Alignment explanation
Indices: 39192058--39192238 Score: 256
Period size: 48 Copynumber: 3.8 Consensus size: 48
39192048 TATCTCAAAT
* * *
39192058 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
*
39192106 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
* *
39192154 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
* ** *
39192202 GCTCTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 GCACTATGTGTGCG-ATTTACTATAGCACTATGTGTGC
39192239 CACATTCGGT
Statistics
Matches: 123, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 118 0.96
49 5 0.04
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
Found at i:39192230 original size:72 final size:72
Alignment explanation
Indices: 39192058--39192238 Score: 222
Period size: 72 Copynumber: 2.5 Consensus size: 72
39192048 TATCTCAAAT
* * * *
39192058 GCACTATGTGTGCGA-TTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGAT
1 GCACTATGTGTGCGACAT-AATATAGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGAT
*
39192122 TTACTATG
65 TTACTATA
** * * *
39192130 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
1 GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
*
39192195 TGCTATA
66 TACTATA
*
39192202 GCTCTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 GCACTATGTGTGCG-ACATAATATAGCACTATGTGTGC
39192239 CACATTCGGT
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
72 91 0.93
73 7 0.07
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (72 bp):
GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
TACTATA
Found at i:39197797 original size:44 final size:43
Alignment explanation
Indices: 39197729--39197841 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 43
39197719 TGATTTCGTA
* * * * *
39197729 TAAGACCATGTCTAGGATGTTGGCATCGAT-TTGAGATTTACATG
1 TAAGACCACGTTTGGGAAGTTGGCATCAATATT-AGA-TTACATG
*
39197773 TAAGACC-CTGTTTGGGATAG-TGGCATCAATATTTGATTACATG
1 TAAGACCAC-GTTTGGGA-AGTTGGCATCAATATTAGATTACATG
39197816 TAAGACCACGTTTGGGAAGTTGGCAT
1 TAAGACCACGTTTGGGAAGTTGGCAT
39197842 TGTATGAGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.03
43 28 0.48
44 25 0.43
45 3 0.05
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (43 bp):
TAAGACCACGTTTGGGAAGTTGGCATCAATATTAGATTACATG
Found at i:39198615 original size:43 final size:42
Alignment explanation
Indices: 39198554--39198669 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 42
39198544 GGGGTGTTAC
* *
39198554 ACGATGCCACTGTCCCAGATAGGGTCTTACACGAAAT-CATAT
1 ACGATGCCACTGTCCCAGACAGAGTCTTACACGAAATACA-AT
* * *
39198596 AACGATGCCAATGTCCCAGACATAGTCTTACACGTAATACAAT
1 -ACGATGCCACTGTCCCAGACAGAGTCTTACACGAAATACAAT
* **
39198639 ACAATGCCACTGTCCCAGACATCGTCTTACA
1 ACGATGCCACTGTCCCAGACAGAGTCTTACA
39198670 TGTAATCACA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 28 0.44
43 34 0.53
44 2 0.03
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
ACGATGCCACTGTCCCAGACAGAGTCTTACACGAAATACAAT
Found at i:39198658 original size:42 final size:43
Alignment explanation
Indices: 39198557--39198677 Score: 147
Period size: 42 Copynumber: 2.8 Consensus size: 43
39198547 GTGTTACACG
* ** * *
39198557 ATGCCACTGTCCCAGATAGGGTCTTACACGAAATCATATAACG
1 ATGCCACTGTCCCAGACATAGTCTTACACGTAATCATATAACA
*
39198600 ATGCCAATGTCCCAGACATAGTCTTACACGTAATACA-AT-ACA
1 ATGCCACTGTCCCAGACATAGTCTTACACGTAAT-CATATAACA
* *
39198642 ATGCCACTGTCCCAGACATCGTCTTACATGTAATCA
1 ATGCCACTGTCCCAGACATAGTCTTACACGTAATCA
39198678 CATCTCAATA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 2 0.03
42 33 0.49
43 31 0.46
44 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATAGTCTTACACGTAATCATATAACA
Found at i:39207249 original size:86 final size:84
Alignment explanation
Indices: 39207085--39207249 Score: 194
Period size: 86 Copynumber: 1.9 Consensus size: 84
39207075 CAGAGAACTT
* * *
39207085 ATACAATGCCAATTTCCCAGACGTGGTCTTACATGTAATCAACATCGATGCCGCTGTCCCAGATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAACATCGATGCCACTGTCCCAGATA
*
39207150 GGGTCTTACACGAACTTAA
66 GAGTCTTACACGAACTTAA
* *
39207169 ATACAATGTCAATGTCCCAGACATTGTCTTACATGTAAAAT-AGA-AGTCGATGCCAAC-GTCCC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGT--AATCA-ACA-TCGATGCC-ACTGTCCC
39207231 AGAT-GTAGTCTTACACGAA
61 AGATAG-AGTCTTACACGAA
39207250 ATCAGATAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
84 32 0.46
85 3 0.04
86 33 0.48
87 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (84 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAACATCGATGCCACTGTCCCAGATA
GAGTCTTACACGAACTTAA
Found at i:39208266 original size:19 final size:22
Alignment explanation
Indices: 39208232--39208271 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
39208222 CTTTAATAAG
39208232 ACAAATCAACTAAGC-ACTTTA
1 ACAAATCAACTAAGCAACTTTA
39208253 ACAAA-CAA-TAAGCAACTTT
1 ACAAATCAACTAAGCAACTTT
39208272 TACATTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 8 0.44
21 5 0.28
ACGTcount: A:0.50, C:0.23, G:0.05, T:0.23
Consensus pattern (22 bp):
ACAAATCAACTAAGCAACTTTA
Found at i:39209714 original size:56 final size:56
Alignment explanation
Indices: 39209653--39209843 Score: 283
Period size: 56 Copynumber: 3.4 Consensus size: 56
39209643 TCCCAGACAG
* * * *
39209653 GGTCTTACTCGCACATATAAATCAAAATCACATATTGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACATATATATCAGAATCACATATCGATGCCAAAGTATTAAACGT
* * *
39209709 TGTCTTACTCGCACATATATATCGGAAGCACATATCGATGCCAAAGTATTAAACGT
1 GGTCTTACTCGCACATATATATCAGAATCACATATCGATGCCAAAGTATTAAACGT
* * *
39209765 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGTCAATGTATTAAACGT
1 GGTCTTACTCGCACATATATATCAGAATCACATATCGATGCCAAAGTATTAAACGT
*
39209821 GGTCTTACTCGCACACATATATC
1 GGTCTTACTCGCACATATATATC
39209844 GATGCCATGG
Statistics
Matches: 122, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 122 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACATATATATCAGAATCACATATCGATGCCAAAGTATTAAACGT
Found at i:39210769 original size:15 final size:16
Alignment explanation
Indices: 39210749--39210786 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
39210739 ATGATGAATT
39210749 TTATTATAACAT-ATA
1 TTATTATAACATCATA
* *
39210764 TTATTATAATATCATT
1 TTATTATAACATCATA
39210780 TTATTAT
1 TTATTAT
39210787 TCATTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATTATAACATCATA
Found at i:39214927 original size:12 final size:11
Alignment explanation
Indices: 39214910--39214954 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 11
39214900 AAATGGTCAT
39214910 GGAGGGATTGTA
1 GGAGGGATTG-A
39214922 GGAGGGAGTTGA
1 GGAGGGA-TTGA
*
39214934 GGAGAGATATGA
1 GGAGGGAT-TGA
39214946 GGAGGGATT
1 GGAGGGATT
39214955 TTAGGATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 2 0.07
12 24 0.83
13 3 0.10
ACGTcount: A:0.29, C:0.00, G:0.51, T:0.20
Consensus pattern (11 bp):
GGAGGGATTGA
Found at i:39214960 original size:12 final size:12
Alignment explanation
Indices: 39214910--39214960 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
39214900 AAATGGTCAT
39214910 GGAGGGA-TTGTA
1 GGAGGGATTTG-A
*
39214922 GGAGGGAGTTGA
1 GGAGGGATTTGA
* *
39214934 GGAGAGATATGA
1 GGAGGGATTTGA
*
39214946 GGAGGGATTTTA
1 GGAGGGATTTGA
39214958 GGA
1 GGA
39214961 TAAAATCAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
12 29 0.91
13 3 0.09
ACGTcount: A:0.29, C:0.00, G:0.49, T:0.22
Consensus pattern (12 bp):
GGAGGGATTTGA
Found at i:39216358 original size:27 final size:27
Alignment explanation
Indices: 39216320--39216442 Score: 126
Period size: 27 Copynumber: 4.7 Consensus size: 27
39216310 GACTATTTTT
* ** *
39216320 CCCTTATAGGGTAAGCTGATCGAAATA
1 CCCTCATAGGGTAAAATGACCGAAATA
* * *
39216347 CCCTCATAGGGTAAGAT-AACAAAATA
1 CCCTCATAGGGTAAAATGACCGAAATA
*
39216373 TCCTCATAGGGTAAAATGACCGAAATA
1 CCCTCATAGGGTAAAATGACCGAAATA
* *
39216400 -CC-CATAGGGTAAATTGACCGATATA
1 CCCTCATAGGGTAAAATGACCGAAATA
*
39216425 CCCCCATAGGGTAAAATG
1 CCCTCATAGGGTAAAATG
39216443 GCTGTAATAC
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
25 21 0.26
26 26 0.32
27 35 0.43
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
CCCTCATAGGGTAAAATGACCGAAATA
Found at i:39216378 original size:26 final size:26
Alignment explanation
Indices: 39216342--39216442 Score: 89
Period size: 26 Copynumber: 3.8 Consensus size: 26
39216332 AAGCTGATCG
*
39216342 AAATACCCTCATAGGGTAAGAT-AACA
1 AAATA-CCTCATAGGGTAAAATGAACA
* *
39216368 AAATATCCTCATAGGGTAAAATGACCG
1 AAATA-CCTCATAGGGTAAAATGAACA
* * *
39216395 AAATACC-CATAGGGTAAATTGACCG
1 AAATACCTCATAGGGTAAAATGAACA
* *
39216420 ATATACCCCCATAGGGTAAAATG
1 AAATA-CCTCATAGGGTAAAATG
39216443 GCTGTAATAC
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
25 21 0.32
26 24 0.37
27 20 0.31
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.21
Consensus pattern (26 bp):
AAATACCTCATAGGGTAAAATGAACA
Found at i:39216452 original size:27 final size:26
Alignment explanation
Indices: 39216325--39216471 Score: 100
Period size: 27 Copynumber: 5.6 Consensus size: 26
39216315 TTTTTCCCTT
** * *
39216325 ATAGGGTAAGCTGATCGAAATACCCTC
1 ATAGGGTAAAATGACCG-AATACCCCC
* * ** * *
39216352 ATAGGGTAAGATAACAAAATATCCTC
1 ATAGGGTAAAATGACCGAATACCCCC
39216378 ATAGGGTAAAATGACCGAAATA--CCC
1 ATAGGGTAAAATGACCG-AATACCCCC
*
39216403 ATAGGGTAAATTGACCGATATACCCCC
1 ATAGGGTAAAATGACCGA-ATACCCCC
* * *
39216430 ATAGGGTAAAATGGCTGTAATACCCCT
1 ATAGGGTAAAATGACCG-AATACCCCC
* *
39216457 GTAAGGTAAAATGAC
1 ATAGGGTAAAATGAC
39216472 TATTTTGCCC
Statistics
Matches: 96, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
24 1 0.01
25 21 0.22
26 21 0.22
27 52 0.54
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (26 bp):
ATAGGGTAAAATGACCGAATACCCCC
Found at i:39216493 original size:27 final size:27
Alignment explanation
Indices: 39216461--39216669 Score: 238
Period size: 27 Copynumber: 7.7 Consensus size: 27
39216451 ACCCCTGTAA
*
39216461 GGTAAAATGACTATTTTGCCCTTATAT
1 GGTAAAATGACTATTTTGCCCTTATGT
* *
39216488 GTTAAAATGACGATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* * * *
39216515 GATAAAATGGCGATTTTGCCCTAATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* *
39216542 GGCAAAATGACTGTTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* * * *
39216569 GTTAAATTGACTGTTTTGCCCTTATAT
1 GGTAAAATGACTATTTTGCCCTTATGT
** * *
39216596 GGTAAAATGACGGTTTTGTCCTTATTT
1 GGTAAAATGACTATTTTGCCCTTATGT
39216623 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
** *
39216650 GGTAGGATGACTGTTTTGCC
1 GGTAAAATGACTATTTTGCC
39216670 ACTGAGTGAT
Statistics
Matches: 154, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTATGT
Found at i:39216572 original size:81 final size:81
Alignment explanation
Indices: 39216464--39216669 Score: 270
Period size: 81 Copynumber: 2.5 Consensus size: 81
39216454 CCTGTAAGGT
* * *
39216464 AAAATGACTATTTTGCCCTTATATGTTAAAATGAC-GATTTTGCCCTTATGTGATAAAATGGCGA
1 AAAATGACTATTTTGCCCTTATGTGTTAAAATGACTG-TTTTGCCCTTATATGATAAAATGACGA
39216528 TTTTGCCCTAATGTGGC
65 TTTTGCCCTAATGTGGC
* * * *
39216545 AAAATGACTGTTTTGCCCTTATGTGTTAAATTGACTGTTTTGCCCTTATATGGTAAAATGACGGT
1 AAAATGACTATTTTGCCCTTATGTGTTAAAATGACTGTTTTGCCCTTATATGATAAAATGACGAT
* * * *
39216610 TTTGTCCTTATTTGGT
66 TTTGCCCTAATGTGGC
* **
39216626 AAAATGACTATTTTGCCCTTATGTGGTAGGATGACTGTTTTGCC
1 AAAATGACTATTTTGCCCTTATGTGTTAAAATGACTGTTTTGCC
39216670 ACTGAGTGAT
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
81 107 0.99
82 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (81 bp):
AAAATGACTATTTTGCCCTTATGTGTTAAAATGACTGTTTTGCCCTTATATGATAAAATGACGAT
TTTGCCCTAATGTGGC
Found at i:39216969 original size:23 final size:24
Alignment explanation
Indices: 39216943--39216987 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
39216933 ATATCCCCAT
39216943 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGTTGGATGGAG
39216966 ATGGAGTGTAGAGGTTGGATGG
1 ATGGAGTGTAGAGGTTGGATGG
39216988 GTATGACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.22, C:0.00, G:0.51, T:0.27
Consensus pattern (24 bp):
ATGGAGTGTAGAGGTTGGATGGAG
Found at i:39217045 original size:18 final size:17
Alignment explanation
Indices: 39217001--39217053 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
39216991 TGACTTGCAT
39217001 ACTACTTACTGTTACTAA
1 ACTA-TTACTGTTACTAA
**
39217019 ACTGATTACTGTTACTGC
1 ACT-ATTACTGTTACTAA
*
39217037 ACTATTTACTGCTACTA
1 ACTA-TTACTGTTACTA
39217054 CAATGGGCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.03
18 27 0.93
19 1 0.03
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (17 bp):
ACTATTACTGTTACTAA
Found at i:39219339 original size:18 final size:19
Alignment explanation
Indices: 39219312--39219347 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
39219302 GAATGTACTA
39219312 TTCATATACA-CATATATT
1 TTCATATACATCATATATT
*
39219330 TTCATTTACATCATATAT
1 TTCATATACATCATATAT
39219348 AAATTGCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.47
Consensus pattern (19 bp):
TTCATATACATCATATATT
Found at i:39219639 original size:56 final size:56
Alignment explanation
Indices: 39219578--39219767 Score: 283
Period size: 56 Copynumber: 3.4 Consensus size: 56
39219568 TCCCAGACAG
* *
39219578 GGTCTTACTCACACACATAAATCGGAATCACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGT
*
39219634 GGTCTTACTCGCACACATATATAGGAATCACATATCGATGCCAA-AGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACA-TATTAAACGT
* * * * *
39219690 GGTCTTACTCGCACACATATATCCGAATCGCATATTGATGCCAACATATTAAATGC
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGT
*
39219746 GGTCTTACTCGCACATATATAT
1 GGTCTTACTCGCACACATATAT
39219768 TGATGCCATG
Statistics
Matches: 122, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
55 1 0.01
56 120 0.98
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGT
Found at i:39219781 original size:31 final size:31
Alignment explanation
Indices: 39219746--39219814 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
39219736 TATTAAATGC
* **
39219746 GGTCTTACTCGCACATATATATTGATGCCAT
1 GGTCTTACTCGCACACATATATCAATGCCAT
39219777 GGTCTTACTCGCACACATATATCAATGCCAT
1 GGTCTTACTCGCACACATATATCAATGCCAT
39219808 GGTCTTA
1 GGTCTTA
39219815 ATTGCACTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (31 bp):
GGTCTTACTCGCACACATATATCAATGCCAT
Found at i:39221906 original size:40 final size:40
Alignment explanation
Indices: 39221819--39222035 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
39221809 AATGATGTCT
* * * * * *
39221819 GGGCTGAGTCCCGAAGGC-TTTGTGCTAAGTAACTATATCT
1 GGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAATCC
* * *
39221859 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCCGAAGGCAATTGTGCGAGTTACTAAATCC
* * *
39221899 AGGCTAAG-ACCGAAGGC-ATTGGTGCGAATTACTAAATCC
1 GGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAATCC
39221938 GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCC
*
39221978 GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-CC
1 GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AAATCC
*
39222018 GGGCTATGTCCCGAAGGC
1 GGGCTAAGTCCCGAAGGC
39222036 CTTTGAATGA
Statistics
Matches: 153, Mismatches: 17, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.20
40 107 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCC
Found at i:39224639 original size:29 final size:29
Alignment explanation
Indices: 39224606--39224848 Score: 237
Period size: 29 Copynumber: 8.4 Consensus size: 29
39224596 CAATATAAGT
*
39224606 AAGCCTTTGTGGCAATCTCTGTTACAA-GG
1 AAGCCTTTGTGGCGATCTCTGTTA-AATGG
* * *
39224635 AAGCCCTTGTGGCTATCTCTGTTAAATGA
1 AAGCCTTTGTGGCGATCTCTGTTAAATGG
* *
39224664 AAGCTTTTGTGGCTATCTCTGTTAAAT-G
1 AAGCCTTTGTGGCGATCTCTGTTAAATGG
*
39224692 AATGCCTTTGTGGCGATCTTTGTTAAATGG
1 AA-GCCTTTGTGGCGATCTCTGTTAAATGG
* * * *
39224722 AAGCCTCTGTGGTTG-TTTTTGTTAAA-GG
1 AAGCCTTTGTGG-CGATCTCTGTTAAATGG
* * *
39224750 AATCCTTTGTGGTGATCTTTGTTAAATGG
1 AAGCCTTTGTGGCGATCTCTGTTAAATGG
* *
39224779 AAGCCTTTGTGGCTGGT-TTTGTTAAA-GG
1 AAGCCTTTGTGGC-GATCTCTGTTAAATGG
* *
39224807 AAGCCTTTGTGGTGATCTCTATTAAATGG
1 AAGCCTTTGTGGCGATCTCTGTTAAATGG
*
39224836 AAGCCCTTGTGGC
1 AAGCCTTTGTGGC
39224849 TGTTTCTAAA
Statistics
Matches: 181, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
27 4 0.02
28 47 0.26
29 124 0.69
30 6 0.03
ACGTcount: A:0.21, C:0.15, G:0.26, T:0.38
Consensus pattern (29 bp):
AAGCCTTTGTGGCGATCTCTGTTAAATGG
Found at i:39224703 original size:58 final size:57
Alignment explanation
Indices: 39224606--39224849 Score: 276
Period size: 57 Copynumber: 4.2 Consensus size: 57
39224596 CAATATAAGT
* * *
39224606 AAGCCTTTGTGGCAATCTCTGTTACAAGGAAGCCCTTGTGGCT-ATCTCTGTTAAATGA
1 AAGCCTTTGTGGCTATCTCTGTTA-AAGGAAGCCTTTGTGG-TGATCTCTGTTAAATGG
* * * *
39224664 AAGCTTTTGTGGCTATCTCTGTTAAATGAATGCCTTTGTGGCGATCTTTGTTAAATGG
1 AAGCCTTTGTGGCTATCTCTGTTAAAGGAA-GCCTTTGTGGTGATCTCTGTTAAATGG
* * * * * * *
39224722 AAGCCTCTGTGGTTGTTTTTGTTAAAGGAATCCTTTGTGGTGATCTTTGTTAAATGG
1 AAGCCTTTGTGGCTATCTCTGTTAAAGGAAGCCTTTGTGGTGATCTCTGTTAAATGG
* * *
39224779 AAGCCTTTGTGGCTGGT-TTTGTTAAAGGAAGCCTTTGTGGTGATCTCTATTAAATGG
1 AAGCCTTTGTGGCT-ATCTCTGTTAAAGGAAGCCTTTGTGGTGATCTCTGTTAAATGG
*
39224836 AAGCCCTTGTGGCT
1 AAGCCTTTGTGGCT
39224850 GTTTCTAAAG
Statistics
Matches: 161, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
57 92 0.57
58 69 0.43
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.39
Consensus pattern (57 bp):
AAGCCTTTGTGGCTATCTCTGTTAAAGGAAGCCTTTGTGGTGATCTCTGTTAAATGG
Found at i:39224846 original size:86 final size:87
Alignment explanation
Indices: 39224608--39224849 Score: 264
Period size: 86 Copynumber: 2.8 Consensus size: 87
39224598 ATATAAGTAA
* * * * *
39224608 GCCTTTGTGGCAATCTCTGTTACAAGGAAGCCCTTGTGGCT-ATCTCTGTTAAATGAAAGCTTTT
1 GCCTTTGTGGCGATCTTTGTTA-AAGGAAGCCTTTGTGGCTGATCTCTGTTAAATGGAAGCCTTT
39224672 GTGGCTATCTCTGTTAAATGAAT
65 GTGGCTATCTCTGTTAAATGAAT
* * * * *
39224695 GCCTTTGTGGCGATCTTTGTTAAATGGAAGCCTCTGTGGTTG-TTTTTGTTAAA-GGAATCCTTT
1 GCCTTTGTGGCGATCTTTGTTAAA-GGAAGCCTTTGTGGCTGATCTCTGTTAAATGGAAGCCTTT
*
39224758 GTGG-TGATCTTTGTTAAATGGAA-
65 GTGGCT-ATCTCTGTTAAAT-GAAT
* * *
39224781 GCCTTTGTGGCTGGT-TTTGTTAAAGGAAGCCTTTGTGG-TGATCTCTATTAAATGGAAGCCCTT
1 GCCTTTGTGGC-GATCTTTGTTAAAGGAAGCCTTTGTGGCTGATCTCTGTTAAATGGAAGCCTTT
39224844 GTGGCT
65 GTGGCT
39224850 GTTTCTAAAG
Statistics
Matches: 129, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
84 2 0.02
85 22 0.17
86 57 0.44
87 48 0.37
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (87 bp):
GCCTTTGTGGCGATCTTTGTTAAAGGAAGCCTTTGTGGCTGATCTCTGTTAAATGGAAGCCTTTG
TGGCTATCTCTGTTAAATGAAT
Found at i:39228217 original size:41 final size:40
Alignment explanation
Indices: 39228172--39228288 Score: 123
Period size: 41 Copynumber: 2.9 Consensus size: 40
39228162 CTGGTGAATT
39228172 AAATCAGGCTTTATGCCTAGCAGGCTTATTGCCGGTGTATA
1 AAATCAGGCTTTATGCCTAGCAGGCTT-TTGCCGGTGTATA
* * * * *
39228213 AAATCAGACTTTGA-GTCTAGCAGGCCTTTTGTCGGTGTGTG
1 AAATCAGGCTTT-ATGCCTAGCAGG-CTTTTGCCGGTGTATA
*
39228254 ATA-CAGGC-TTATGCCTAGCAGGCTTTATGCCGGTG
1 AAATCAGGCTTTATGCCTAGCAGGCTTT-TGCCGGTG
39228289 AATTATTAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
38 5 0.08
39 18 0.29
40 4 0.06
41 32 0.51
42 4 0.06
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (40 bp):
AAATCAGGCTTTATGCCTAGCAGGCTTTTGCCGGTGTATA
Found at i:39235524 original size:64 final size:64
Alignment explanation
Indices: 39235451--39235661 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
39235441 CTGGGCCAGA
*
39235451 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
39235515 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
39235577 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
39235588 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
39235652 GCCCATTTCA
1 GCCCATTTCA
39235662 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:39235625 original size:137 final size:137
Alignment explanation
Indices: 39235417--39235703 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
39235407 TATTGGGCCT
**
39235417 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
39235482 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
39235547 CATATGC
131 CATATGC
39235554 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
39235619 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
39235684 CATATGC
131 CATATGC
39235691 AAGCCCATTTGGG
1 AAGCCCATTTGGG
39235704 AGACTACTCA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:39237508 original size:26 final size:26
Alignment explanation
Indices: 39237472--39237606 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
39237462 CATGAAATTC
39237472 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
39237498 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
39237524 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
39237550 TTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
39237575 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
39237601 TTATCA
1 TTATCA
39237607 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:39237583 original size:51 final size:52
Alignment explanation
Indices: 39237472--39237606 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
39237462 CATGAAATTC
* *
39237472 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
39237524 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
39237575 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
39237607 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 49 0.60
52 32 0.40
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:39241629 original size:136 final size:137
Alignment explanation
Indices: 39241358--39241643 Score: 547
Period size: 136 Copynumber: 2.1 Consensus size: 137
39241348 CTATTGGGCT
**
39241358 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
39241423 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
39241488 CATATGC
131 CATATGC
39241495 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
39241560 AG-CCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
39241624 CATATGC
131 CATATGC
39241631 AAGCCCATTTGGG
1 AAGCCCATTTGGG
39241644 GAGACTACTC
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 82 0.56
137 65 0.44
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:39243445 original size:26 final size:26
Alignment explanation
Indices: 39243409--39243544 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
39243399 CATGAAATTC
*
39243409 TTATCATGAAACATTTATCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
39243435 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
39243461 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
39243487 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
39243513 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
39243539 TTATCA
1 TTATCA
39243545 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:39245590 original size:46 final size:46
Alignment explanation
Indices: 39245537--39245712 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
39245527 TATTTGGGCA
*
39245537 TCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *** * * * *
39245583 TCCGAACTCGTTGAATTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
39245630 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
39245676 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
39245713 GCGGCTTACA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:39245704 original size:93 final size:93
Alignment explanation
Indices: 39245533--39245704 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
39245523 GGGATATTTG
* * *
39245533 GGCATCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAA
**
39245598 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* * *
39245626 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAA
39245691 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
39245705 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAA
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:39247439 original size:25 final size:25
Alignment explanation
Indices: 39247411--39247458 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
39247401 GCCAATTCTT
39247411 TTTTCATCTACTATTCTACCTAAGG
1 TTTTCATCTACTATTCTACCTAAGG
39247436 TTTTCATCTACTATTCTACCTAA
1 TTTTCATCTACTATTCTACCTAA
39247459 CGTGCCCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.04, T:0.46
Consensus pattern (25 bp):
TTTTCATCTACTATTCTACCTAAGG
Found at i:39247468 original size:25 final size:25
Alignment explanation
Indices: 39247415--39247468 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
39247405 ATTCTTTTTT
* ***
39247415 CATCTACTATTCTACCTAAGGTTTT
1 CATCTACTATTCTACCTAACGTGCC
39247440 CATCTACTATTCTACCTAACGTGCC
1 CATCTACTATTCTACCTAACGTGCC
39247465 CATC
1 CATC
39247469 CTTGTACCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.31, G:0.07, T:0.37
Consensus pattern (25 bp):
CATCTACTATTCTACCTAACGTGCC
Found at i:39252703 original size:28 final size:28
Alignment explanation
Indices: 39252671--39252760 Score: 121
Period size: 28 Copynumber: 3.3 Consensus size: 28
39252661 GGAGGAAGCA
* *
39252671 TTCTGGTGGTTGTGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
39252699 TTCTGGTGGCTACGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
39252726 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
39252753 ATCTGGTG
1 TTCTGGTG
39252761 ACTCTATCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.15
27 23 0.42
28 24 0.44
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:39252742 original size:27 final size:26
Alignment explanation
Indices: 39252671--39252781 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 26
39252661 GGAGGAAGCA
* *
39252671 TTCTGGTGGTTGTGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCAC-AATATCTG
39252698 TTTCTGGTGGCTAC-GCCACAAATATCTG
1 -TTCTGGTGGCT-CTGCCAC-AATATCTG
39252726 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* **
39252752 TATCTGGTGACTCTATCACAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
39252779 TTC
1 TTC
39252782 AGGCAGCCAT
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
26 12 0.16
27 39 0.52
28 24 0.32
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:39256304 original size:40 final size:40
Alignment explanation
Indices: 39256257--39256384 Score: 177
Period size: 40 Copynumber: 3.2 Consensus size: 40
39256247 CTTGCACAAG
* *
39256257 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
39256297 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
39256337 GCCTTTGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
39256377 GCCTTCGG
1 GCCTTCGG
39256385 ATCTGTAACG
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 76 0.99
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:39259093 original size:20 final size:20
Alignment explanation
Indices: 39259068--39259138 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
39259058 GTATGCATGA
*
39259068 TATGCACATGAAATGTATGC
1 TATGCACATGATATGTATGC
39259088 TATGCACATGATATGTATGC
1 TATGCACATGATATGTATGC
*
39259108 TATGCACATGATATGTATGA
1 TATGCACATGATATGTATGC
39259128 TATGCACATGA
1 TATGCACATGA
39259139 GGTAATCATA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (20 bp):
TATGCACATGATATGTATGC
Found at i:39259113 original size:40 final size:40
Alignment explanation
Indices: 39259059--39259138 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
39259049 ATAAATATGG
*
39259059 TATGCATGATATGCACATGAAATGTATGCTATGCACATGA
1 TATGCATGATATGCACATGAAATGTATGATATGCACATGA
* * *
39259099 TATGTATGCTATGCACATGATATGTATGATATGCACATGA
1 TATGCATGATATGCACATGAAATGTATGATATGCACATGA
39259139 GGTAATCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (40 bp):
TATGCATGATATGCACATGAAATGTATGATATGCACATGA
Found at i:39259138 original size:11 final size:11
Alignment explanation
Indices: 39259063--39259138 Score: 56
Period size: 11 Copynumber: 7.5 Consensus size: 11
39259053 ATATGGTATG
39259063 CATGATATGCA
1 CATGATATGCA
*
39259074 CATGAAATG--
1 CATGATATGCA
* *
39259083 TATGCTATGCA
1 CATGATATGCA
39259094 CATGATATG--
1 CATGATATGCA
* *
39259103 TATGCTATGCA
1 CATGATATGCA
39259114 CATGATATG--
1 CATGATATGCA
*
39259123 TATGATATGCA
1 CATGATATGCA
39259134 CATGA
1 CATGA
39259139 GGTAATCATA
Statistics
Matches: 47, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
9 21 0.45
11 26 0.55
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (11 bp):
CATGATATGCA
Found at i:39259216 original size:24 final size:24
Alignment explanation
Indices: 39259189--39259331 Score: 202
Period size: 24 Copynumber: 6.0 Consensus size: 24
39259179 GAGGAAGTGA
39259189 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
39259213 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
39259237 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
39259260 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
39259284 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATC
*
39259308 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
39259332 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
23 24 0.22
24 76 0.68
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:39259282 original size:47 final size:47
Alignment explanation
Indices: 39259189--39259331 Score: 200
Period size: 47 Copynumber: 3.0 Consensus size: 47
39259179 GAGGAAGTGA
39259189 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
39259237 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* *
39259284 GAAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTAT-GCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
39259332 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
46 1 0.01
47 42 0.48
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:39259305 original size:71 final size:72
Alignment explanation
Indices: 39259189--39259332 Score: 213
Period size: 71 Copynumber: 2.0 Consensus size: 72
39259179 GAGGAAGTGA
*
39259189 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
39259252 CCAGTTAT
65 CCAGTTAT
** *
39259260 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAT-GCCCCAGTTATCAAAAGAGGCTAGGCCT
39259324 CCAGTTAT
65 CCAGTTAT
39259332 A
1 A
39259333 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
70 1 0.02
71 53 0.80
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:39259558 original size:31 final size:31
Alignment explanation
Indices: 39259523--39259586 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
39259513 CGTTTACAGT
*
39259523 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
39259554 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
39259585 AA
1 AA
39259587 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:39268289 original size:40 final size:40
Alignment explanation
Indices: 39268242--39268425 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
39268232 CTTGCACAAG
* *
39268242 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
39268282 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
39268322 GCCTTCGGGTCTTAGCCCGGATATA--CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
39268361 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
39268402 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
39268426 CATTCGAATA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 31 0.25
40 61 0.50
41 29 0.24
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:39280632 original size:40 final size:40
Alignment explanation
Indices: 39280585--39280769 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
39280575 CTTGCACAAG
* *
39280585 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
39280625 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
39280665 GCCTTCGGGTCTTAGCCCGGATATA-ACAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
39280705 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
39280746 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
39280770 CATTCGAATA
Statistics
Matches: 122, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 92 0.75
41 29 0.24
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:39286135 original size:42 final size:43
Alignment explanation
Indices: 39286033--39286144 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
39286023 AGCTCGTACA
* * * **
39286033 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATGTTG
1 ATGCCAATGTCCTAGACATGGTCTTACATGAAATCAAATGACG
* * *
39286076 ATGCCACTGTCCCAGACAAGGTCTTACATGAAATCAAAT-ACG
1 ATGCCAATGTCCTAGACATGGTCTTACATGAAATCAAATGACG
39286118 ATGCCAATGTCCTAGACATGGTCTTAC
1 ATGCCAATGTCCTAGACATGGTCTTAC
39286145 TCGTAAATCT
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACATGGTCTTACATGAAATCAAATGACG
Found at i:39286153 original size:43 final size:42
Alignment explanation
Indices: 39286033--39286173 Score: 144
Period size: 43 Copynumber: 3.3 Consensus size: 42
39286023 AGCTCGTACA
* * *
39286033 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCAAATGTTG
1 ATGCCAATGTCCTAGACATGGTCTTACATGTAAATCAAA--TCG
* * *
39286076 ATGCCACTGTCCCAGACAAGGTCTTACATG-AAATCAAATACG
1 ATGCCAATGTCCTAGACATGGTCTTACATGTAAATCAAAT-CG
39286118 ATGCCAATGTCCTAGACATGGTCTTAC-TCGTAAATCTCAAATCG
1 ATGCCAATGTCCTAGACATGGTCTTACAT-GTAAA--TCAAATCG
*
39286162 AGGCCAATGTCC
1 ATGCCAATGTCC
39286174 CAAATGTGGT
Statistics
Matches: 82, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
41 2 0.02
42 26 0.32
43 35 0.43
44 13 0.16
45 6 0.07
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACATGGTCTTACATGTAAATCAAATCG
Found at i:39286184 original size:44 final size:44
Alignment explanation
Indices: 39286078--39286196 Score: 118
Period size: 44 Copynumber: 2.8 Consensus size: 44
39286068 AAATGTTGAT
* * * * *
39286078 GCCACTGTCCCAGACAAGGTCTTACATGAAA--TCAAATACGAT
1 GCCAATGTCCCAAACATGGTCTTACACGAAATCTCAAATACGAG
* * *
39286120 GCCAATGTCCTAGACATGGTCTTACTCGTAAATCTCAAAT-CGAG
1 GCCAATGTCCCAAACATGGTCTTACACG-AAATCTCAAATACGAG
**
39286164 GCCAATGTCCCAAATGTGGTCTTACACGAAATC
1 GCCAATGTCCCAAACATGGTCTTACACGAAATC
39286197 ACATATCATA
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 23 0.37
43 8 0.13
44 26 0.41
45 6 0.10
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (44 bp):
GCCAATGTCCCAAACATGGTCTTACACGAAATCTCAAATACGAG
Found at i:39289510 original size:30 final size:30
Alignment explanation
Indices: 39289476--39289536 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
39289466 TCCTTAACTC
39289476 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
39289506 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
39289536 A
1 A
39289537 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:39296506 original size:39 final size:40
Alignment explanation
Indices: 39296305--39296511 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
39296295 TCTTTGGAAT
* ** *
39296305 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
39296344 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
39296384 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
39296424 TTAGCCCAGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
39296464 TTAGCCCGGATATAATC-ACT-ACATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
39296503 TTAGCCCGG
1 TTAGCCCGG
39296512 GTATCATTCA
Statistics
Matches: 151, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 28 0.19
40 122 0.81
41 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:39311923 original size:42 final size:43
Alignment explanation
Indices: 39311814--39311984 Score: 123
Period size: 43 Copynumber: 4.0 Consensus size: 43
39311804 AGCTCGTACA
* * * *
39311814 ATGCCAACGTCTCATACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACATGAAATCAAATATCG
* ** * *
39311857 ATGCCATTGTCCCGGACAGGGTCTTACATGAAATCAAGTAT-G
1 ATGCCAATGTCCCAAACATGGTCTTACATGAAATCAAATATCG
* ** *
39311899 ATGCTAATGTTTCAAACATGGTCTTACACAT-AAATCTCAA-ATCG
1 ATGCCAATGTCCCAAACATGGTCTT--ACATGAAATC-AAATATCG
* * ** * *
39311943 ATGCCAACGTCCCAGACGCGGTCTTACACGAAATCACATATC
1 ATGCCAATGTCCCAAACATGGTCTTACATGAAATCAAATATC
39311985 AAAAATCCTA
Statistics
Matches: 95, Mismatches: 27, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
42 23 0.24
43 48 0.51
44 24 0.25
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAAACATGGTCTTACATGAAATCAAATATCG
Found at i:39314105 original size:85 final size:85
Alignment explanation
Indices: 39314004--39314175 Score: 308
Period size: 85 Copynumber: 2.0 Consensus size: 85
39313994 CTCCTAGTTA
* * *
39314004 TGGTGATAGAGGTGGACTAAAATGCTTATTAAACATGAGGAAAAATTATCATAATAATTAATTGA
1 TGGTGATAGAGATGGACAAAAATGCTTATTAAACATGAGGAAAAATTATCATAAGAATTAATTGA
39314069 AAAGTGTGAACAATGAGGCT
66 AAAGTGTGAACAATGAGGCT
*
39314089 TGGTGATAGAGATGGACAAAAATGCTTATTAAACATGAGGAAAAATTGTCATAAGAATTAATTGA
1 TGGTGATAGAGATGGACAAAAATGCTTATTAAACATGAGGAAAAATTATCATAAGAATTAATTGA
39314154 AAAGTGTGAACAATGAGGCT
66 AAAGTGTGAACAATGAGGCT
39314174 TG
1 TG
39314176 AACCTTGGAC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.27
Consensus pattern (85 bp):
TGGTGATAGAGATGGACAAAAATGCTTATTAAACATGAGGAAAAATTATCATAAGAATTAATTGA
AAAGTGTGAACAATGAGGCT
Found at i:39317118 original size:46 final size:46
Alignment explanation
Indices: 39317050--39317186 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
39317040 TATATATACA
* * * *
39317050 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
39317096 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
39317142 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
39317187 ATACATGTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:39317220 original size:47 final size:47
Alignment explanation
Indices: 39317160--39317304 Score: 218
Period size: 47 Copynumber: 3.1 Consensus size: 47
39317150 ACACATTTCG
* * *
39317160 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
39317207 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * *
39317254 CATTGGCCATTCGACCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
39317301 CATT
1 CATT
39317305 AAAATCCTAA
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:39320168 original size:15 final size:16
Alignment explanation
Indices: 39320148--39320177 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
39320138 AAGGTCTTAT
39320148 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
39320163 AATCATAACCTTACT
1 AATCATAACCTTACT
39320178 GAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:39320458 original size:42 final size:40
Alignment explanation
Indices: 39320347--39320500 Score: 155
Period size: 42 Copynumber: 3.7 Consensus size: 40
39320337 TTTCATACCA
* *** *
39320347 ATGCCATATCCCAAAATGGTCTTACATGTAATCTCGTATG
1 ATGCCATATCCCAATATGGTCTTACACAAAATCTCATATG
* *
39320387 AATGCCAATAGCCCAACTATGGACTTACACAAAATCTCATATCG
1 -ATGCC-ATATCCCAA-TATGGTCTTACACAAAATCTCATAT-G
*
39320431 ATGCCATATCCCAGATATGGTCTTACACAAAGTCTCATATTG
1 ATGCCATATCCCA-ATATGGTCTTACACAAAATCTCATA-TG
* * *
39320473 ATGTCATATTCCGATATGGTCTTACACA
1 ATGCCATATCCCAATATGGTCTTACACA
39320501 TATTCTTAGT
Statistics
Matches: 95, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
41 20 0.21
42 48 0.51
43 26 0.27
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (40 bp):
ATGCCATATCCCAATATGGTCTTACACAAAATCTCATATG
Found at i:39323074 original size:15 final size:15
Alignment explanation
Indices: 39323025--39323083 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 15
39323015 TAAGTTATAT
*
39323025 ATAATAATATAATATGA
1 ATAA-AATATAAAAT-A
*
39323042 ATAAAATATAAGGA-A
1 ATAAAATATAA-AATA
39323057 ATAAAATATAAAATA
1 ATAAAATATAAAATA
39323072 ATAAAAATATAA
1 AT-AAAATATAA
39323084 TAAGTAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
14 1 0.03
15 15 0.41
16 16 0.43
17 5 0.14
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (15 bp):
ATAAAATATAAAATA
Found at i:39323136 original size:21 final size:22
Alignment explanation
Indices: 39323110--39323151 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
39323100 AAAATATAGT
*
39323110 AAAATAAATAGTATA-AAAAAC
1 AAAATAAATAATATATAAAAAC
39323131 AAAATAAATAATATATAAAAA
1 AAAATAAATAATATATAAAAA
39323152 TATAAGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAATAAATAATATATAAAAAC
Found at i:39323602 original size:21 final size:22
Alignment explanation
Indices: 39323562--39323604 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
39323552 GGATAATAAC
39323562 AATAATATATAACTAATATTTAT
1 AATAATATATAAC-AATATTTAT
*
39323585 AATAATATATAA-AGTATTTA
1 AATAATATATAACAATATTTA
39323605 AAGTAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
AATAATATATAACAATATTTAT
Found at i:39327410 original size:27 final size:28
Alignment explanation
Indices: 39327353--39327422 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
39327343 AAACTTGTAC
*
39327353 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
39327381 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
39327408 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
39327423 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:39327433 original size:27 final size:27
Alignment explanation
Indices: 39327353--39327434 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
39327343 AAACTTGTAC
* * *
39327353 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
39327381 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
39327408 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
39327435 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:39334316 original size:40 final size:39
Alignment explanation
Indices: 39334261--39334490 Score: 250
Period size: 40 Copynumber: 5.8 Consensus size: 39
39334251 CGGATGATAA
* *
39334261 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGTTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGCT-ATT-ATT
* * *
39334301 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTATTAT-T
*
39334341 CCGGGCTAAGTCCCGAAGGCGTTTGTG-TGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCTATTAT-T
* * *
39334381 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTATTATT
* * * *
39334420 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTATTAT-T
*
39334460 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
39334491 TGGCTATATC
Statistics
Matches: 167, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 38 0.23
40 126 0.75
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTATTATT
Found at i:39334464 original size:79 final size:80
Alignment explanation
Indices: 39334301--39334484 Score: 280
Period size: 79 Copynumber: 2.3 Consensus size: 80
39334291 GTGGTTAATT
* *
39334301 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
** * *
39334366 TGTGAGCTATTATAT
66 TGCAAGCTACTATAA
* *
39334381 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
39334445 TGCAAGTTACTATAA
66 TGCAAGCTACTATAA
39334460 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
39334485 AGCTAGTGGC
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 59 0.62
80 36 0.38
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACTATAA
Found at i:39334473 original size:119 final size:120
Alignment explanation
Indices: 39334261--39334484 Score: 335
Period size: 119 Copynumber: 1.9 Consensus size: 120
39334251 CGGATGATAA
* * *
39334261 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGTTAATTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGATTAATACCGGGCTAAGTCCCGAAGGCATTCG
* * *
39334326 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGTGAGCTATTATAT
66 TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGCTATTATAT
* * *
39334381 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGTTATT-ATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGATTAATACCGGGCTAAGTCCCGAAGGCATTC
*
39334444 GTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
65 GTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
39334485 AGCTAGTGGC
Statistics
Matches: 93, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
119 63 0.68
120 30 0.32
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGATTAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGCTATTATAT
Found at i:39334517 original size:79 final size:79
Alignment explanation
Indices: 39334301--39334507 Score: 274
Period size: 79 Copynumber: 2.6 Consensus size: 79
39334291 GTGGTTAATT
* *
39334301 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
** * *
39334366 TGTGAGCTATTATAT
65 TGCAAGCTACTATAA
*
39334381 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
39334445 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
* * *
39334460 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
39334508 ACTCCGAAGG
Statistics
Matches: 112, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 73 0.65
80 38 0.34
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:39339962 original size:40 final size:40
Alignment explanation
Indices: 39339917--39340083 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
39339907 CGGAATATAA
39339917 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
39339957 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
39339997 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
39340037 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
39340076 CCGGATAT
1 CCGGATAT
39340084 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:39344041 original size:21 final size:21
Alignment explanation
Indices: 39344012--39344054 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
39344002 TGAACTTAGC
39344012 ATATAATTGCTTATCCCGTAA
1 ATATAATTGCTTATCCCGTAA
*
39344033 ATATTATTGCTTATCCCGTAA
1 ATATAATTGCTTATCCCGTAA
39344054 A
1 A
39344055 ATTTGCGCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.40
Consensus pattern (21 bp):
ATATAATTGCTTATCCCGTAA
Found at i:39348014 original size:40 final size:40
Alignment explanation
Indices: 39347969--39348136 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
39347959 CGGAATATAA
39347969 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
39348009 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
39348049 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
39348089 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
39348129 CCGGATAT
1 CCGGATAT
39348137 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:39350037 original size:21 final size:23
Alignment explanation
Indices: 39349993--39350039 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
39349983 ATCAAAACAT
39349993 TTCACAAATAATTCACAAACATCA
1 TTCACAAATAATTCAC-AACATCA
*
39350017 TTCACACATAA-TCAC-ACATCA
1 TTCACAAATAATTCACAACATCA
39350038 TT
1 TT
39350040 ACAGAGTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
23 4 0.18
24 10 0.45
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.28
Consensus pattern (23 bp):
TTCACAAATAATTCACAACATCA
Found at i:39351526 original size:42 final size:42
Alignment explanation
Indices: 39351413--39351575 Score: 148
Period size: 43 Copynumber: 3.8 Consensus size: 42
39351403 CCGTAAGCTC
* * * *
39351413 ATACAATGCCAACGACCCAGACATGGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCAA
* * * *
39351455 ATATCGATGCC-ACTATCCCAGATAGGGTCTTACACGAAATTAA
1 ATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAA
* * * *
39351498 ATACGATGCCAATGTCCTAGACACGGTCTTACACATAAATCATA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACAC-GAAATCA-A
* * *
39351542 ATTCGATGCCAACGTCCTAGACGTGGTCTTACAC
1 ATACGATGCCAACGTCCCAGACATGGTCTTACAC
39351576 AAAAACACAT
Statistics
Matches: 97, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
42 29 0.30
43 37 0.38
44 31 0.32
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:39357692 original size:55 final size:55
Alignment explanation
Indices: 39357627--39357738 Score: 188
Period size: 55 Copynumber: 2.0 Consensus size: 55
39357617 CAGACTAGGG
*
39357627 TTAAGAGGCATTACTGGCCAAATCAAAACATTTCACAAATAATTCACAAACATCA
1 TTAAGAGGCATTACCGGCCAAATCAAAACATTTCACAAATAATTCACAAACATCA
***
39357682 TTAAGAGGCATTACCGGCCAAATTGGAACATTTCACAAATAATTCACAAACATCA
1 TTAAGAGGCATTACCGGCCAAATCAAAACATTTCACAAATAATTCACAAACATCA
39357737 TT
1 TT
39357739 CACACATAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.25
Consensus pattern (55 bp):
TTAAGAGGCATTACCGGCCAAATCAAAACATTTCACAAATAATTCACAAACATCA
Found at i:39357757 original size:21 final size:23
Alignment explanation
Indices: 39357713--39357759 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
39357703 ATTGGAACAT
39357713 TTCACAAATAATTCACAAACATCA
1 TTCACAAATAATTCAC-AACATCA
*
39357737 TTCACACATAA-TCAC-ACATCA
1 TTCACAAATAATTCACAACATCA
39357758 TT
1 TT
39357760 ACAGAGTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
23 4 0.18
24 10 0.45
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.28
Consensus pattern (23 bp):
TTCACAAATAATTCACAACATCA
Found at i:39359262 original size:43 final size:44
Alignment explanation
Indices: 39359142--39359263 Score: 151
Period size: 43 Copynumber: 2.8 Consensus size: 44
39359132 AGTTCATACA
* *
39359142 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCTAGACATGGTCTTACATGTAAATCAAATATCG
* * **
39359185 ATGCCACTGTCCTAGACAAGGTCTTACA-CAAAATCAAATAT-G
1 ATGCCAATGTCCTAGACATGGTCTTACATGTAAATCAAATATCG
* *
39359227 ATGCCAATGTCCTAGACATGATCTTAAATGTAAATCA
1 ATGCCAATGTCCTAGACATGGTCTTACATGTAAATCA
39359264 TAAGTCGACG
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 25 0.38
43 40 0.62
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (44 bp):
ATGCCAATGTCCTAGACATGGTCTTACATGTAAATCAAATATCG
Found at i:39374658 original size:43 final size:42
Alignment explanation
Indices: 39374601--39374681 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
39374591 AATGCCAACG
* *
39374601 TCCCAGACGTGGTCTGACATGTAACCAAATATCGATGCCACTA
1 TCCCAGACGTGGTCTGACACGAAACCAAATAT-GATGCCACTA
* *
39374644 TCCCAGACAG-GGTCTTACACGAAATCAAATATGATGCC
1 TCCCAGAC-GTGGTCTGACACGAAACCAAATATGATGCC
39374682 GATGTCCCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 6 0.18
43 26 0.79
44 1 0.03
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (42 bp):
TCCCAGACGTGGTCTGACACGAAACCAAATATGATGCCACTA
Found at i:39380229 original size:20 final size:18
Alignment explanation
Indices: 39380195--39380231 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
39380185 GCAACTCATA
39380195 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
39380213 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
39380232 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:39383204 original size:22 final size:22
Alignment explanation
Indices: 39383177--39383254 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
39383167 TTAGTACTAC
39383177 ACACGTGACCTAACCATCTGAT
1 ACACGTGACCTAACCATCTGAT
* * *
39383199 ACACGTAGTAGCCTGCACTTAGTACT-AC
1 ACACGT-G-A-CCT-AAC-CA-T-CTGAT
39383227 ACACGTGACCTAACCATCTGAT
1 ACACGTGACCTAACCATCTGAT
39383249 ACACGT
1 ACACGT
39383255 AGTATCCTGC
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 14 0.33
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 8 0.19
29 2 0.05
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (22 bp):
ACACGTGACCTAACCATCTGAT
Found at i:39383211 original size:50 final size:50
Alignment explanation
Indices: 39383093--39383387 Score: 369
Period size: 50 Copynumber: 5.9 Consensus size: 50
39383083 AGCCGAAGCT
* * * * * **
39383093 ATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AATT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
39383142 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
*
39383192 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * * **
39383242 ATCTGATACACGTAGTATCCTGCACTTAGTACTACACACGTGATCGAAGTT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * * * * *
39383293 ATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
39383342 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
39383388 CACAATGGCT
Statistics
Matches: 215, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
49 80 0.37
50 98 0.46
51 37 0.17
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:39389714 original size:40 final size:40
Alignment explanation
Indices: 39389659--39389839 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
39389649 TATTCGGATG
* *
39389659 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
39389699 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
39389739 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
39389779 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
39389819 ATATCC-GACTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
39389840 ATACTTGGGT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.09
40 115 0.89
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:39401751 original size:33 final size:33
Alignment explanation
Indices: 39401709--39401774 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
39401699 TGATTTTGAG
39401709 TAAAGCTCACAATAGTCGGTTATCTATGCATCC
1 TAAAGCTCACAATAGTCGGTTATCTATGCATCC
39401742 TAAAGCTCACAATAGTCGGTTATCTATGCATCC
1 TAAAGCTCACAATAGTCGGTTATCTATGCATCC
39401775 GAATAGTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (33 bp):
TAAAGCTCACAATAGTCGGTTATCTATGCATCC
Found at i:39413509 original size:9 final size:9
Alignment explanation
Indices: 39413495--39413541 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
39413485 CCACAGAATC
39413495 TTTTTATTT
1 TTTTTATTT
39413504 TTTTTA-TT
1 TTTTTATTT
*
39413512 TTTTT-TGT
1 TTTTTATTT
*
39413520 ATTTTATTT
1 TTTTTATTT
39413529 TTTTTACTTT
1 TTTTTA-TTT
39413539 TTT
1 TTT
39413542 GATCACTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
8 12 0.39
9 13 0.42
10 6 0.19
ACGTcount: A:0.11, C:0.02, G:0.02, T:0.85
Consensus pattern (9 bp):
TTTTTATTT
Found at i:39427644 original size:24 final size:24
Alignment explanation
Indices: 39427583--39427631 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
39427573 ATACACAATT
39427583 TTATCAACCACATAGGTTTATCTA
1 TTATCAACCACATAGGTTTATCTA
39427607 TTATCAACCACATAGGTTTATCTA
1 TTATCAACCACATAGGTTTATCTA
39427631 T
1 T
39427632 CTCATACACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (24 bp):
TTATCAACCACATAGGTTTATCTA
Found at i:39429385 original size:28 final size:28
Alignment explanation
Indices: 39429353--39429451 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
39429343 GCAATAAGCC
*
39429353 CGCACACTTAGTGCTTAATAGTTGAACT
1 CGCACACTTAGTGCTTAATAATTGAACT
**
39429381 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATTGAACT
* *
39429409 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TTGAACT
39429438 CGCACACTTAGTGC
1 CGCACACTTAGTGC
39429452 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
27 2 0.03
28 39 0.66
29 17 0.29
30 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATTGAACT
Found at i:39438254 original size:40 final size:40
Alignment explanation
Indices: 39438186--39438287 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
39438176 GAAACTATCT
* *
39438186 CAATATCGCACACTTAGTGCCACATATAGCCGAAGCTATTC
1 CAAT-TCGCACACTTAGAGCCACATATAGCCAAAGCTATTC
* ** *
39438227 CAATTCGCACACTTAGAGCTATTTATAGCCAAAGCTATTT
1 CAATTCGCACACTTAGAGCCACATATAGCCAAAGCTATTC
* *
39438267 CAAATCGCACACTTAGTGCCA
1 CAATTCGCACACTTAGAGCCA
39438288 AACATTGTCT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
40 48 0.92
41 4 0.08
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (40 bp):
CAATTCGCACACTTAGAGCCACATATAGCCAAAGCTATTC
Found at i:39440711 original size:56 final size:56
Alignment explanation
Indices: 39440616--39440722 Score: 137
Period size: 56 Copynumber: 1.9 Consensus size: 56
39440606 CATGGCATTT
* * *
39440616 ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTCCA
1 ATATATGTGTGCGAGTAAGACCACGTCTGAGACGTTGGCATCAATATGTGACTCCA
* *
39440672 ATATATGTGTGCGAGTAAGACC-CTGTCTGGGACAG-TGGCATCATTATGTGA
1 ATATATGTGTGCGAGTAAGACCAC-GTCTGAGAC-GTTGGCATCAATATGTGA
39440723 TTACATGTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
55 1 0.02
56 42 0.95
57 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTCTGAGACGTTGGCATCAATATGTGACTCCA
Found at i:39443894 original size:50 final size:50
Alignment explanation
Indices: 39443834--39443933 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
39443824 TAAATGTGAA
39443834 TGTTTAAAAATTTGTATTTTGTCTGGTAATATCTCGTAACCAC-AATTTGG
1 TGTTTAAAAATTTGTATTTTGTCTGGTAATATCTCGTAACC-CTAATTTGG
*
39443884 TGTTTGAAAATTTGTATTTTGTCTGGTAATATCTCGTAACCCTAATTTGG
1 TGTTTAAAAATTTGTATTTTGTCTGGTAATATCTCGTAACCCTAATTTGG
39443934 CGACGTATAC
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
49 1 0.02
50 47 0.98
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (50 bp):
TGTTTAAAAATTTGTATTTTGTCTGGTAATATCTCGTAACCCTAATTTGG
Found at i:39447238 original size:27 final size:27
Alignment explanation
Indices: 39447179--39447238 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
39447169 CCTAGACCCT
39447179 CCTT-TGTGGTAAAATGACTGTATTGC
1 CCTTATGTGGTAAAATGACTGTATTGC
* *
39447205 CCCTATGTGGTAAAATGACTAT-TATGC
1 CCTTATGTGGTAAAATGACTGTAT-TGC
39447232 CCTTATG
1 CCTTATG
39447239 AGATGTATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
CCTTATGTGGTAAAATGACTGTATTGC
Found at i:39448206 original size:79 final size:79
Alignment explanation
Indices: 39448117--39448271 Score: 222
Period size: 79 Copynumber: 2.0 Consensus size: 79
39448107 TTCAACGATG
* *
39448117 TTATACTTTGCGAAAAACACTTCAATATGACATCGCTAGATTCA-ACCATAACGTCCGGGCCAGG
1 TTATACTTTGCAAAAAACACTTCAATATGACATCGCTAGATT-AGACCATAACGTCCGGGCCAAG
39448181 TTTGGGGTGTTATAT
65 TTTGGGGTGTTATAT
* * * * * *
39448196 TTATACTTTGCAAAAAACACTTCAATGTGACATCGCTGGATTAGGCCATAATGTCTGGGCCAATT
1 TTATACTTTGCAAAAAACACTTCAATATGACATCGCTAGATTAGACCATAACGTCCGGGCCAAGT
39448261 TTGGGGTGTTA
66 TTGGGGTGTTA
39448272 CAGTCTTACA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.01
79 66 0.99
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (79 bp):
TTATACTTTGCAAAAAACACTTCAATATGACATCGCTAGATTAGACCATAACGTCCGGGCCAAGT
TTGGGGTGTTATAT
Found at i:39451682 original size:25 final size:25
Alignment explanation
Indices: 39451641--39451707 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
39451631 TCTTGTACAT
*
39451641 GTATGCTCATACGAGCTATGAATCA
1 GTATGCTCATACGAGCTATAAATCA
*
39451666 GTATGCTC-TCACTAGCTATAAATCA
1 GTATGCTCAT-ACGAGCTATAAATCA
* * *
39451691 ATAAGCTCATTCGAGCT
1 GTATGCTCATACGAGCT
39451708 GAGAATTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.03
25 32 0.94
26 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATAAATCA
Found at i:39451730 original size:25 final size:25
Alignment explanation
Indices: 39451711--39451773 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
39451701 TCGAGCTGAG
39451711 AATTAGTAAGCTCTCACGAGCTACA
1 AATTAGTAAGCTCTCACGAGCTACA
* *
39451736 AATTGGTAAGCTCTCACGAGCTATA
1 AATTAGTAAGCTCTCACGAGCTACA
* *
39451761 AGTTGGTAAGCTC
1 AATTAGTAAGCTC
39451774 ATACGTGCTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
AATTAGTAAGCTCTCACGAGCTACA
Found at i:39455048 original size:50 final size:47
Alignment explanation
Indices: 39454942--39455065 Score: 135
Period size: 47 Copynumber: 2.5 Consensus size: 47
39454932 CAAATTAATA
* *
39454942 GTGGCTTGTCCACTAAGTGTTTCAGTGGCAGTATATTTGCATATATG
1 GTGGCTTGTCCACAAAGTGTTTCAGTGGCAGTATATCTGCATATATG
* *
39454989 GTGGCTTGTCCACAAAGT-TATATCAGTGGTAGTTTATCTGCA-AGTCATTG
1 GTGGCTTGTCCACAAAGTGT-T-TCAGTGGCAGTATATCTGCATA-T-A-TG
39455039 GTGGCTTGTCCACAAATGGTGTTTCAG
1 GTGGCTTGTCCACAAA--GTGTTTCAG
39455066 ATGGACAAGT
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
46 1 0.02
47 19 0.29
48 18 0.28
49 1 0.02
50 18 0.28
51 4 0.06
52 3 0.05
53 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (47 bp):
GTGGCTTGTCCACAAAGTGTTTCAGTGGCAGTATATCTGCATATATG
Done.