Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 133 of 410
Found at i:40244520 original size:28 final size:28
Alignment explanation
Indices: 40244480--40244546 Score: 134
Period size: 28 Copynumber: 2.4 Consensus size: 28
40244470 GACACGGGCT
40244480 AGGACACGGGCGTGTCATGGCCGTGTGA
1 AGGACACGGGCGTGTCATGGCCGTGTGA
40244508 AGGACACGGGCGTGTCATGGCCGTGTGA
1 AGGACACGGGCGTGTCATGGCCGTGTGA
40244536 AGGACACGGGC
1 AGGACACGGGC
40244547 CATAGACACG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.19, C:0.22, G:0.43, T:0.15
Consensus pattern (28 bp):
AGGACACGGGCGTGTCATGGCCGTGTGA
Found at i:40247999 original size:44 final size:43
Alignment explanation
Indices: 40247846--40248017 Score: 125
Period size: 43 Copynumber: 4.0 Consensus size: 43
40247836 AAAGCTAGTA
* ** * * * *
40247846 CAATGCCAACGTCCTAGATGTGATCTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAAAAT
** * * * * *
40247889 CGGTGCC-ACTATCCAAGACAGGGTCTTACAC-AAACTCATATA-
1 CAATGCCAAC-GTCCCAGACATGGTCTTACACGAAA-TCAAAAAT
* * *
40247931 CGATGCCAATGTCCTAGACATGGTCTTACACGTAAATCAAAAAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACG-AAATCAAAAAT
* *
40247975 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACAAAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAAAAT
40248018 TGGTATCCTA
Statistics
Matches: 100, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
42 28 0.28
43 41 0.41
44 31 0.31
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAAAAT
Found at i:40255598 original size:40 final size:40
Alignment explanation
Indices: 40255539--40255725 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
40255529 CATTGGAATG
* * * *
40255539 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
40255579 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
40255619 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
40255659 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
40255699 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
40255726 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:40255641 original size:80 final size:80
Alignment explanation
Indices: 40255539--40255692 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
40255529 CATTGGAATG
* * ** *
40255539 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
40255604 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
40255619 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
40255684 ATCGTGCGA
66 ATCGTGCGA
40255693 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:40255707 original size:80 final size:80
Alignment explanation
Indices: 40255543--40255725 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
40255533 GGAATGATAT
* ** * *
40255543 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
40255608 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
40255623 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
40255688 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
40255703 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
40255726 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:40255745 original size:80 final size:80
Alignment explanation
Indices: 40255543--40255760 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
40255533 GGAATGATAT
* * * * * * * *
40255543 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
40255607 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
40255623 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
40255688 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
40255703 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
40255761 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:40263633 original size:39 final size:40
Alignment explanation
Indices: 40263552--40263746 Score: 178
Period size: 40 Copynumber: 4.9 Consensus size: 40
40263542 CATTGGAATG
* * * *
40263552 ATATCCGGGCTAAGTCCCGAAGGCAATT-ATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
*
40263592 ATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
* * **
40263631 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
* * * * * *
40263671 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
* * * * * *
40263711 ATAACCGGGCTAGGTCCCGAAGACAATCGAGCGAGT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
40263747 CGCTATATCC
Statistics
Matches: 127, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
38 3 0.02
39 31 0.24
40 93 0.73
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
Found at i:40263652 original size:79 final size:80
Alignment explanation
Indices: 40263552--40263704 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 80
40263542 CATTGGAATG
* * ** *
40263552 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
40263616 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
40263631 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
40263696 ATCGTGCGA
66 ATCGTGCGA
40263705 ATCACTATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 46 0.73
80 17 0.27
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:40263730 original size:80 final size:79
Alignment explanation
Indices: 40263556--40263737 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 79
40263546 GGAATGATAT
* ** * *
40263556 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCGAAGGCAATCGT
* *** *
40263621 GCGAGTTGTTATAT
66 GCGAATCACTATAA
* * * * *
40263635 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGA-CCGAAGGCAATCG
40263700 TGCGAATCACTATAA
65 TGCGAATCACTATAA
* *
40263715 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
40263738 CGAGCGAGTC
Statistics
Matches: 83, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
79 42 0.51
80 41 0.49
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCGAAGGCAATCGT
GCGAATCACTATAA
Found at i:40271095 original size:27 final size:27
Alignment explanation
Indices: 40271063--40271294 Score: 188
Period size: 27 Copynumber: 8.6 Consensus size: 27
40271053 AAGTACTCCT
* *
40271063 GATTTACAAAATTACCATTTTACCCTCA
1 GATTTACAGAATTACCGTTTTACCC-CA
* *
40271091 G-TTTATAGAATTACTGTTTTACCCTC-
1 GATTTACAGAATTACCGTTTTACCC-CA
** * *
40271117 GATTTGTAAAATTACCGTTTTACCCCC
1 GATTTACAGAATTACCGTTTTACCCCA
40271144 GATTTACAGAATTACCGTTTTACCCCTA
1 GATTTACAGAATTACCGTTTTACCCC-A
* * *
40271172 -ATTTACATAATTACCATTTTACCCCC
1 GATTTACAGAATTACCGTTTTACCCCA
* * *
40271198 GATTTACATAATTATCGTTTGACCCTCA
1 GATTTACAGAATTACCGTTTTACCC-CA
** **
40271226 G-TTTACAGAATTATTGTTTTACCCTTT
1 GATTTACAGAATTACCGTTTTACCC-CA
*
40271253 GATTTACAGAATTACTGTTTTTACCCTC-
1 GATTTACAGAATTACCG-TTTTACCC-CA
40271281 GATTTACA-AATTAC
1 GATTTACAGAATTAC
40271295 TAAAATACCC
Statistics
Matches: 172, Mismatches: 25, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.01
27 136 0.79
28 25 0.15
29 9 0.05
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCCA
Found at i:40271121 original size:54 final size:54
Alignment explanation
Indices: 40271063--40271294 Score: 231
Period size: 54 Copynumber: 4.3 Consensus size: 54
40271053 AAGTACTCCT
* *
40271063 GATTTACAAAATTACCATTTTACCCTC-AGTTTATAGAATTACTGTTTTACCCTC
1 GATTTACAAAATTACCATTTTACCCCCGA-TTTACAGAATTACTGTTTTACCCTC
** * *
40271117 GATTTGTAAAATTACCGTTTTACCCCCGATTTACAGAATTACCGTTTTACCC-C
1 GATTTACAAAATTACCATTTTACCCCCGATTTACAGAATTACTGTTTTACCCTC
* * * *
40271170 TAATTTACATAATTACCATTTTACCCCCGATTTACATAATTA-TCGTTTGACCCTC
1 -GATTTACAAAATTACCATTTTACCCCCGATTTACAGAATTACT-GTTTTACCCTC
* *** **
40271225 -AGTTTACAGAATTATTGTTTTACCCTTTGATTTACAGAATTACTGTTTTTACCCTC
1 GA-TTTACAAAATTACCATTTTACCC-CCGATTTACAGAATTACTG-TTTTACCCTC
40271281 GATTTAC-AAATTAC
1 GATTTACAAAATTAC
40271295 TAAAATACCC
Statistics
Matches: 145, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
53 2 0.01
54 106 0.73
55 21 0.14
56 15 0.10
57 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
GATTTACAAAATTACCATTTTACCCCCGATTTACAGAATTACTGTTTTACCCTC
Found at i:40271157 original size:81 final size:81
Alignment explanation
Indices: 40271063--40271294 Score: 245
Period size: 81 Copynumber: 2.9 Consensus size: 81
40271053 AAGTACTCCT
* * * **
40271063 GATTTACAAAATTACCATTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGATTTGTAAAA
1 GATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTACAAAA
*
40271128 TTACCGTTTTACCCCC
66 TTACCGTTTGACCCCC
* * ** * *
40271144 GATTTACAGAATTACCGTTTTACCC-CTAATTTACATAATTACCATTTTACCCCCGATTTACATA
1 GATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTGTTTTACCCTCGATTTACAAA
* *
40271208 ATTATCGTTTGACCCTC
65 ATTACCGTTTGACCCCC
** **
40271225 -AGTTTACAGAATTATTGTTTTACCCTTTGATTTACAGAATTACTGTTTTTACCCTCGATTTAC-
1 GA-TTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACTG-TTTTACCCTCGATTTACA
40271288 AAATTAC
63 AAATTAC
40271295 TAAAATACCC
Statistics
Matches: 121, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
80 2 0.02
81 86 0.71
82 17 0.14
83 16 0.13
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTACAAAA
TTACCGTTTGACCCCC
Found at i:40271320 original size:27 final size:27
Alignment explanation
Indices: 40271288--40271468 Score: 132
Period size: 27 Copynumber: 6.7 Consensus size: 27
40271278 CTCGATTTAC
*
40271288 AAATTACTAAAATACCCTTGGTTTGTG
1 AAATTACTAAAATACCCTTGGTTTGTA
* *** ***
40271315 ATATTACCGCAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTTGGTTTGTA
* * *
40271342 AAACTACCAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCCTTGGTTTGTA
* ** * *
40271369 AAATTCCTGGAATACCCTTTGTTTATA
1 AAATTACTAAAATACCCTTGGTTTGTA
* * *
40271396 AAATTAC-CAAATACCCATGGTTTGAA
1 AAATTACTAAAATACCCTTGGTTTGTA
* **
40271422 AAATTACTAAAATACCCCT-GTAGGGTA
1 AAATTACTAAAATACCCTTGGT-TTGTA
*
40271449 AAATTACTGAAATACCCTTG
1 AAATTACTAAAATACCCTTG
40271469 TGGGGTAAAA
Statistics
Matches: 113, Mismatches: 38, Indels: 5
0.72 0.24 0.03
Matches are distributed among these distances:
26 22 0.19
27 91 0.81
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTTGGTTTGTA
Found at i:40271474 original size:27 final size:27
Alignment explanation
Indices: 40271421--40271482 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
40271411 CATGGTTTGA
40271421 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
40271448 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
40271475 AAAATTAC
1 AAAATTAC
40271483 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:40272134 original size:28 final size:28
Alignment explanation
Indices: 40272101--40272196 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
40272091 GCGTAGATCA
40272101 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
40272129 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
40272157 CG-AATTACCCCTAAATAGAAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
40272184 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
40272197 GGGTTTAAAT
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
26 3 0.05
27 32 0.51
28 28 0.44
ACGTcount: A:0.46, C:0.25, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:40276869 original size:2 final size:2
Alignment explanation
Indices: 40276862--40276888 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
40276852 CGGCTCTTGC
40276862 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
40276889 TTGCACGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:40277686 original size:40 final size:39
Alignment explanation
Indices: 40277606--40277786 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 39
40277596 AATGATGTCC
* * *
40277606 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCG
1 GGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * *
40277646 GACTAAGATCCGAAGGCATTTGTGCGATTTACTAATTCCG
1 GGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
40277686 GGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
40277725 GGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA-CCG
1 GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
40277765 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGT-CCGAAGGCATTTG
40277787 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:40277738 original size:79 final size:81
Alignment explanation
Indices: 40277606--40277786 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 81
40277596 AATGATGTCC
* *
40277606 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTATG
* *
40277670 CGATTTACTA-ATTCCG
66 CGAGTTACTATA-ACCG
* * **
40277686 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTAT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTAT
40277748 GCGAGTTACTATAACCG
65 GCGAGTTACTATAACCG
*
40277765 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
40277787 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTATG
CGAGTTACTATAACCG
Found at i:40277808 original size:79 final size:78
Alignment explanation
Indices: 40277636--40277809 Score: 201
Period size: 79 Copynumber: 2.2 Consensus size: 78
40277626 GTGCTAAGTG
* * * *
40277636 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGATTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
40277701 CATTTGTGCGAGTT
65 CATTTGAACGAGTT
* *
40277715 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTATGCGAGTTACT-ATAACCGGGCTATGTCCCGA
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTATGCGAGTTACTAAT-ACCGGGCTAAG-CCCGA
40277778 AGGCATTTGAACGAG-T
62 AGGCATTTGAACGAGTT
40277794 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
40277810 ATTCTGAAGG
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.04
79 51 0.63
80 27 0.33
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGGC
ATTTGAACGAGTT
Found at i:40285060 original size:2 final size:2
Alignment explanation
Indices: 40285053--40285080 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
40285043 CGGCTCTTGC
40285053 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40285081 TTGCACGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:40285931 original size:79 final size:81
Alignment explanation
Indices: 40285795--40285979 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
40285785 TCGAATGATG
*
40285795 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
* *
40285859 TGTGCGATTTACTA-A
66 TATGCGAGTTACTATA
* * *
40285874 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCC-GAGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGA-CTAAGAT-CCGAAGGC
40285935 ATTTATGCGAGTTACTATA
63 ATTTATGCGAGTTACTATA
* * *
40285954 ACCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
40285980 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 56 0.62
80 32 0.35
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TATGCGAGTTACTATA
Found at i:40285986 original size:40 final size:40
Alignment explanation
Indices: 40285795--40285986 Score: 187
Period size: 40 Copynumber: 4.8 Consensus size: 40
40285785 TCGAATGATG
* * * *
40285795 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTAAA
* * * *
40285835 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGATTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGAGCGAGTTACTAAA
*
40285875 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
* *
40285914 TCCGAGTTAAGTCCCGAAGGCATTT-ATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTTACTA-AA
* * *
40285955 -CCGGGCTATGTCCCAAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
40285987 AGCTATATCC
Statistics
Matches: 128, Mismatches: 17, Indels: 14
0.81 0.11 0.09
Matches are distributed among these distances:
39 34 0.27
40 83 0.65
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
Found at i:40286002 original size:79 final size:78
Alignment explanation
Indices: 40285829--40286002 Score: 192
Period size: 79 Copynumber: 2.2 Consensus size: 78
40285819 GTGCTAAGTG
* * * * *
40285829 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGATTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCAAAGG
**
40285894 CATTTGTGCGAGTT
65 CATTTGAACGAGTT
* *
40285908 ACTAAATCCGAGTTAAG-TCCCGAAGGCATTTATGCGAGTTACT-ATAACCGGGCTATGTCCCAA
1 ACTATATCCG-GTTAAGAT-CCGAAGGCATTTATGCGAGTTACTAAT-ACCGGGCTAAG-CCCAA
40285971 AGGCATTTGAACGAG-T
62 AGGCATTTGAACGAGTT
40285987 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
40286003 ATTCTGAAGG
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
78 3 0.04
79 51 0.64
80 26 0.32
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCAAAGGC
ATTTGAACGAGTT
Found at i:40292301 original size:44 final size:44
Alignment explanation
Indices: 40292244--40292327 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
40292234 TATGTATGAG
* *
40292244 GCATCTGAGCTCATTGAGTTGGC-CTGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCATTGACTTGGCTC-GAGTTCATTATGGATGCGA
*
40292288 GCATCCGAGCTCATTGACTTGGTTCGAGTTCATTATGGAT
1 GCATCCGAGCTCATTGACTTGGCTCGAGTTCATTATGGAT
40292328 ATGATATATG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 35 0.97
45 1 0.03
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.33
Consensus pattern (44 bp):
GCATCCGAGCTCATTGACTTGGCTCGAGTTCATTATGGATGCGA
Found at i:40296508 original size:48 final size:46
Alignment explanation
Indices: 40296442--40296608 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 46
40296432 AAGCTGACGC
* * * * *
40296442 CATGTCCTAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCAAGGCTAATG
* * *
40296490 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCTAATG
* * * * *
40296536 CATGTACCAGACATGTCTTACACTGGCTCTCATAAT-ATGG-TCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCAAGGCT-AATG
*
40296582 CATGTCCTAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
40296609 ACACATATTA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
45 1 0.01
46 71 0.71
47 3 0.03
48 25 0.25
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCTAATG
Found at i:40298294 original size:32 final size:32
Alignment explanation
Indices: 40298258--40298325 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
40298248 CAATCATAAT
40298258 AACCATTTCAATGCAAATTATTTTCCATATCA
1 AACCATTTCAATGCAAATTATTTTCCATATCA
*
40298290 AACCATTTCAATGCACATTATTTTCCATATCA
1 AACCATTTCAATGCAAATTATTTTCCATATCA
40298322 AACC
1 AACC
40298326 TAACATTTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.37, C:0.25, G:0.03, T:0.35
Consensus pattern (32 bp):
AACCATTTCAATGCAAATTATTTTCCATATCA
Found at i:40315195 original size:5 final size:5
Alignment explanation
Indices: 40315145--40315213 Score: 63
Period size: 5 Copynumber: 14.0 Consensus size: 5
40315135 TCATTAATGC
* * * *
40315145 ATAT- ATATAA ATATTA ATATA TTA-A ATA-A ATATG ATACA GTATA ATATA
1 ATATA ATAT-A ATA-TA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
40315194 ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA
40315214 GTATGAGGGC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
4 11 0.21
5 34 0.64
6 7 0.13
7 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:40317114 original size:40 final size:38
Alignment explanation
Indices: 40317070--40317243 Score: 159
Period size: 38 Copynumber: 4.5 Consensus size: 38
40317060 GAATCCAGTC
* *
40317070 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCAGATATAAT
* * *
40317110 ACCAGCACTAGGCTTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCAGATATAAT
* * * *
40317148 ACCAGCACGAAGCCTGCGAGATTTAACCCGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCAGATATAAT
* * * * * *
40317186 ACTAGCGCGAAGCCTGTGGGATTTAACACGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCAGATATAAT
* * * *
40317224 TCTAGCATATAGCCTGCGGG
1 ACCAGCACAAAGCCTGCGGG
40317244 TCTTTAAGCC
Statistics
Matches: 111, Mismatches: 23, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
38 89 0.80
39 5 0.05
40 17 0.15
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:40317151 original size:38 final size:38
Alignment explanation
Indices: 40317070--40317223 Score: 164
Period size: 38 Copynumber: 4.0 Consensus size: 38
40317060 GAATCCAGTC
* * *
40317070 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCAGATATAAT
* * *
40317110 ACCAGCACTAGGCTTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
* * *
40317148 ACCAGCACGAAGCCTGCGAGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
* * * * *
40317186 ACTAGCGCGAAGCCTGTGGGATTTAACACGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
40317224 TCTAGCATAT
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
38 75 0.77
39 5 0.05
40 17 0.18
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.22
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:40326387 original size:19 final size:18
Alignment explanation
Indices: 40326355--40326390 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
40326345 ATAAAATTTT
*
40326355 ATTTTATATTTTTTAATG
1 ATTTTATATATTTTAATG
40326373 ATTTTAATATATTTTAAT
1 ATTTT-ATATATTTTAAT
40326391 TTTTAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
ATTTTATATATTTTAATG
Found at i:40326405 original size:18 final size:18
Alignment explanation
Indices: 40326374--40326423 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
40326364 TTTTTAATGA
40326374 TTTTAAT-ATATTTT-AAT
1 TTTTAATAAT-TTTTAAAT
40326391 TTTTAAATAATTTTTAAAT
1 TTTT-AATAATTTTTAAAT
*
40326410 TTTTTATAATTTTT
1 TTTTAATAATTTTT
40326424 TTAAATTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 4 0.14
18 16 0.55
19 9 0.31
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTAATAATTTTTAAAT
Found at i:40326414 original size:10 final size:10
Alignment explanation
Indices: 40326390--40326432 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
40326380 TATATTTTAA
*
40326390 TTTTTAAATAA
1 TTTTTAAAT-T
40326401 TTTTTAAA-T
1 TTTTTAAATT
40326410 TTTTTATAATT
1 TTTTTA-AATT
40326421 TTTTTAAATT
1 TTTTTAAATT
40326431 TT
1 TT
40326433 AAAAAATCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 6 0.21
10 8 0.28
11 15 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:40326414 original size:27 final size:28
Alignment explanation
Indices: 40326354--40326423 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
40326344 AATAAAATTT
* *
40326354 TATTTTATATTTTTTAATGATTTTAATA
1 TATTTTATATTTTTAAATAATTTTAATA
40326382 TATTTTA-ATTTTTAAATAATTTTTAA-A
1 TATTTTATATTTTTAAATAA-TTTTAATA
*
40326409 TTTTTTATAATTTTT
1 TATTTTAT-ATTTTT
40326424 TTAAATTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 17 0.47
28 13 0.36
29 6 0.17
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (28 bp):
TATTTTATATTTTTAAATAATTTTAATA
Found at i:40326415 original size:20 final size:20
Alignment explanation
Indices: 40326377--40326432 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
40326367 TTAATGATTT
40326377 TAATATATTTT-AA-TTTTTA
1 TAATAT-TTTTAAATTTTTTA
40326396 -AATAATTTTTAAATTTTTTA
1 TAAT-ATTTTTAAATTTTTTA
*
40326416 TAATTTTTTTAAATTTT
1 TAATATTTTTAAATTTT
40326433 AAAAAATCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
18 7 0.22
19 4 0.12
20 18 0.56
21 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TAATATTTTTAAATTTTTTA
Found at i:40326896 original size:30 final size:30
Alignment explanation
Indices: 40326862--40326922 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
40326852 ATGGGTTACG
*
40326862 AACTTTTA-ATTTCATCAAATTAAATCACTT
1 AACTTTTATAATTCA-CAAATTAAATCACTT
* *
40326892 AACTTTTATAATTGACAAATTAAGTCACTT
1 AACTTTTATAATTCACAAATTAAATCACTT
40326922 A
1 A
40326923 TGCCAATTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTATAATTCACAAATTAAATCACTT
Found at i:40330262 original size:40 final size:39
Alignment explanation
Indices: 40330217--40330346 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
40330207 CGGAATATAA
40330217 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
40330257 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
40330297 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
40330337 CCGGATATAA
1 CCGGATATAA
40330347 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:40330361 original size:40 final size:40
Alignment explanation
Indices: 40330233--40330384 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
40330223 ATAACCATGT
* * *
40330233 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
40330273 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
40330313 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
40330353 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
40330385 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:40330367 original size:80 final size:80
Alignment explanation
Indices: 40330233--40330382 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
40330223 ATAACCATGT
*
40330233 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
40330297 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
40330313 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
40330376 CCCGGAT
64 CCCGGAT
40330383 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:40338263 original size:40 final size:39
Alignment explanation
Indices: 40338218--40338347 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
40338208 CGGAATATAA
40338218 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
40338258 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
40338298 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
40338338 CCGGATATAA
1 CCGGATATAA
40338348 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:40338362 original size:40 final size:40
Alignment explanation
Indices: 40338234--40338385 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
40338224 ATAACCATGT
* * *
40338234 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
40338274 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
40338314 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
40338354 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
40338386 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:40338368 original size:80 final size:80
Alignment explanation
Indices: 40338234--40338383 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
40338224 ATAACCATGT
*
40338234 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
40338298 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
40338314 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
40338377 CCCGGAT
64 CCCGGAT
40338384 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:40344746 original size:50 final size:45
Alignment explanation
Indices: 40344629--40344896 Score: 208
Period size: 46 Copynumber: 5.7 Consensus size: 45
40344619 TAGGGTATAA
* * *
40344629 TGCCGATGCCATGTCCCAAACATGGTCTTACACT-ATCT-CATCCATCA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGCTCTACAT--ATCG
* *
40344676 AGTCGATGCTATGTCCCAGACATGGTCTTACACTAGCTCTTACATATCCG
1 TGCCGATGC-ATGTCCCAGACAT-GTCTTACACT-GCTC-TACATAT-CG
* * *
40344726 TGCTGATGCCATGTCCCAGACATGGTCTTACACTG-AC-ACATCTCG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGCTCTACATATCG
* *
40344771 TAGCCGATGCATGCCCCAGACATGTCTTACACTGGCT-TACATCTCG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACT-GCTCTACATATCG
* *
40344817 AGGCCGATGCATGTCCCAGACATGTCTTACACCGGCTCT-CATAAT-G
1 -TGCCGATGCATGTCCCAGACATGTCTTACA-CTGCTCTACAT-ATCG
**
40344863 TGGCTAATGCATGTCCCAGACATGTCTTACACTG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTG
40344897 GCACACAAAT
Statistics
Matches: 184, Mismatches: 21, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
44 10 0.05
45 19 0.10
46 82 0.45
47 32 0.17
48 1 0.01
49 5 0.03
50 31 0.17
51 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGCTCTACATATCG
Found at i:40344814 original size:46 final size:46
Alignment explanation
Indices: 40344679--40344898 Score: 218
Period size: 46 Copynumber: 4.7 Consensus size: 46
40344669 TCCATCAAGT
*
40344679 CGATGCTATGTCCCAGACATGGTCTTACACTAGCTCTTACATATCCGT-GC
1 CGATGC-ATGTCCCAGACAT-GTCTTACACT-G-GCTTACATAT-CGTAGC
* * *
40344729 TGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATATCGTAGC
* *
40344775 CGATGCATGCCCCAGACATGTCTTACACTGGCTTACATCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGTA-GC
* *
40344821 CGATGCATGTCCCAGACATGTCTTACACCGGCTCT-CATAAT-GTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-ATCGTAGC
**
40344867 TAATGCATGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
40344899 ACACAAATAA
Statistics
Matches: 149, Mismatches: 13, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
44 12 0.08
45 17 0.11
46 87 0.58
47 2 0.01
48 1 0.01
49 1 0.01
50 28 0.19
51 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGTAGC
Found at i:40347533 original size:58 final size:57
Alignment explanation
Indices: 40347396--40347534 Score: 154
Period size: 57 Copynumber: 2.4 Consensus size: 57
40347386 TGTATTACAA
* * * * *
40347396 GATTACCAGTCCAGGCTAAATCCTTTTTGTAACGTATGCTCAGAAGAGCTCAATTAG
1 GATTACCAGTACAGGCTAAATCCTATTTGTAACATATGCTCAGAAGAGATCAATCAG
* * * *
40347453 GATTACTAGTCCAGGCTAAATCCTATTTGTAACATATGCTC-GAGAGGGATTATATCAG
1 GATTACCAGTACAGGCTAAATCCTATTTGTAACATATGCTCAGA-AGAGATCA-ATCAG
* *
40347511 GATTACCCGTACGGGCTAAATCCT
1 GATTACCAGTACAGGCTAAATCCT
40347535 TTCTATAATG
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
56 2 0.03
57 43 0.62
58 24 0.35
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (57 bp):
GATTACCAGTACAGGCTAAATCCTATTTGTAACATATGCTCAGAAGAGATCAATCAG
Found at i:40352625 original size:47 final size:47
Alignment explanation
Indices: 40352571--40352731 Score: 250
Period size: 47 Copynumber: 3.4 Consensus size: 47
40352561 TTAGGATTTT
** * *
40352571 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
40352618 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
40352665 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
40352712 ATGTGGTGAATATGAACATG
1 ATGTGATGAATGTGAACATG
40352732 TGTGACACCC
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 105 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:40352671 original size:22 final size:22
Alignment explanation
Indices: 40352600--40352671 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
40352590 GTATATATGA
40352600 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
40352622 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
40352647 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
40352669 GAT
1 GAT
40352672 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:40352720 original size:25 final size:25
Alignment explanation
Indices: 40352645--40352720 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
40352635 ATGCATATAT
40352645 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
40352670 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
40352692 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
40352717 GTGA
1 GTGA
40352721 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:40355306 original size:48 final size:48
Alignment explanation
Indices: 40355231--40355685 Score: 883
Period size: 48 Copynumber: 9.5 Consensus size: 48
40355221 CAAGATAAAT
40355231 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
40355279 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
40355327 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
40355375 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
40355423 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
40355471 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
40355519 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
40355567 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
40355615 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
40355663 ATATGTATATGTGGTAAAGCCGA
1 ATATGTATATGTGGTAAAGCCGA
40355686 TGACTACGTG
Statistics
Matches: 401, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 401 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:40355778 original size:37 final size:37
Alignment explanation
Indices: 40355682--40355778 Score: 167
Period size: 37 Copynumber: 2.6 Consensus size: 37
40355672 TGTGGTAAAG
*
40355682 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
1 CCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGAC
40355719 CCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGAC
1 CCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGAC
* *
40355756 CCGATAACTTCGTGTGGAGATTT
1 CCGATGACTACGTGTGGAGATTT
40355779 CATCTGAGCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
CCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGAC
Found at i:40356731 original size:52 final size:48
Alignment explanation
Indices: 40356573--40356759 Score: 277
Period size: 48 Copynumber: 3.8 Consensus size: 48
40356563 ACAACATGCA
*
40356573 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
40356621 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
40356669 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
*
40356721 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
40356760 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 1 0.01
50 2 0.02
51 1 0.01
52 40 0.32
53 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:40356743 original size:100 final size:96
Alignment explanation
Indices: 40356574--40356759 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 96
40356564 CAACATGCAT
*
40356574 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
40356639 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
40356670 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATATATGAGAAATGTATATGTGGTAAA
*
40356734 GCCGAATGGCTAGTGTGAAATATGTA
61 GCCGAATGGCTAATGTGAAATATGTA
40356760 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
98 1 0.01
99 1 0.01
100 52 0.64
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:40357087 original size:37 final size:37
Alignment explanation
Indices: 40356905--40357086 Score: 310
Period size: 37 Copynumber: 4.9 Consensus size: 37
40356895 GGAAATATAT
*
40356905 TCCGGATAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
40356942 TCCGGGTAAGACCCGATGACTACGTGTGGAAATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
40356979 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
40357016 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
40357053 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
40357087 TCGTCTGAGC
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 137 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:40358405 original size:40 final size:40
Alignment explanation
Indices: 40358350--40358737 Score: 546
Period size: 40 Copynumber: 9.7 Consensus size: 40
40358340 GAGAATTGAG
*
40358350 AGTGATATATCCGGGCTAAGTCCCGAAGGGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
40358390 AGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
40358430 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
40358470 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
40358510 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
40358550 AGTGATATATCCGGGCTAA-ACCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
40358589 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
40358629 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
40358669 AGTGATATATCCGTGCTAA-ACCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCC-GAAGAGCATTCGTGCT
* * *
40358709 GGTGTTATATCCGGGCTAGGTCCCGAAGA
1 AGTGATATATCCGGGCTAAGTCCCGAAGA
40358738 CAATCATGCT
Statistics
Matches: 311, Mismatches: 34, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
39 36 0.12
40 272 0.87
41 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:40358699 original size:199 final size:200
Alignment explanation
Indices: 40358350--40358737 Score: 618
Period size: 199 Copynumber: 1.9 Consensus size: 200
40358340 GAGAATTGAG
* * * *
40358350 AGTGATATATCCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCA
1 AGTGATATATCCGGGCTAAGACCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCCA
*
40358415 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
66 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
40358480 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC
131 CCGGGCTAAGACCCGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTC
40358545 GTGCT
196 GTGCT
*
40358550 AGTGATATATCCGGGCTAA-ACCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCCG
1 AGTGATATATCCGGGCTAAGACCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCCA
40358614 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
66 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* * * * * *
40358679 CCGTGCTAA-ACCCTGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGA
131 CCGGGCTAAGACCC-GAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGA
40358738 CAATCATGCT
Statistics
Matches: 172, Mismatches: 15, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
198 3 0.02
199 150 0.87
200 19 0.11
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (200 bp):
AGTGATATATCCGGGCTAAGACCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCCA
AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
CCGGGCTAAGACCCGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTC
GTGCT
Found at i:40362749 original size:47 final size:47
Alignment explanation
Indices: 40362695--40362888 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
40362685 TTAGGATTTT
** * * *
40362695 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
40362742 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
40362789 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
40362836 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
40362883 ATGTGA
1 ATGTGA
40362889 AATATTTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:40362844 original size:25 final size:25
Alignment explanation
Indices: 40362769--40362844 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
40362759 ATGCATATAT
40362769 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
40362794 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
40362816 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
40362841 GTGA
1 GTGA
40362845 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:40362925 original size:48 final size:48
Alignment explanation
Indices: 40362858--40363039 Score: 276
Period size: 48 Copynumber: 3.8 Consensus size: 48
40362848 TGAACATGCA
*
40362858 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGATATG
* *
40362906 TATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGATATG
* *
40362954 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATAT-T-TATGAGATATG
*
40363004 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
40363040 GTAGGCGATG
Statistics
Matches: 120, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
47 1 0.01
48 76 0.63
50 42 0.35
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGATATG
Found at i:40363017 original size:98 final size:96
Alignment explanation
Indices: 40362859--40363042 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
40362849 GAACATGCAT
*
40362859 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGAAATGTATATGTGGTAAAGTCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGAAATGTATATGTGGTAAAGCCGA
40362924 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
40362955 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAATAT-T-TATGAGAAATGTATATGTGGTAAAGC
*
40363019 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
40363043 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 32 0.40
97 1 0.01
98 47 0.58
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:40363369 original size:37 final size:37
Alignment explanation
Indices: 40363187--40363368 Score: 319
Period size: 37 Copynumber: 4.9 Consensus size: 37
40363177 GGAAATATAT
40363187 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
40363224 TCCGGGTAAGATCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
40363261 TCAGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
40363298 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
40363335 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
40363369 TCGTCTGAGC
Statistics
Matches: 138, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 138 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:40366928 original size:49 final size:49
Alignment explanation
Indices: 40366852--40367046 Score: 264
Period size: 49 Copynumber: 3.9 Consensus size: 49
40366842 TAGCCGAAGC
* *
40366852 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
40366901 AATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * * *
40366952 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
40367001 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
40367047 TCACAATAGT
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 83 0.66
50 2 0.02
51 40 0.32
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:40366974 original size:100 final size:101
Alignment explanation
Indices: 40366857--40367053 Score: 342
Period size: 100 Copynumber: 2.0 Consensus size: 101
40366847 GAAGCTATCT
* *
40366857 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
40366922 TACACTTAGTACTACACACGTGA-TCACAATTTTCG
66 TACACTTAGTACTACACACGTGACTCACAATTTTCG
*
40366957 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
40367022 TGCACTTAGTACTACACACGTGACCTCACAAT
66 TACACTTAGTACTACACACGTGA-CTCACAAT
40367054 AGTTCATTTG
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
100 84 0.92
102 7 0.08
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (101 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TACACTTAGTACTACACACGTGACTCACAATTTTCG
Found at i:40369186 original size:14 final size:15
Alignment explanation
Indices: 40369167--40369229 Score: 78
Period size: 15 Copynumber: 4.4 Consensus size: 15
40369157 TAAAGATAAC
40369167 AAGAAAACC-GAATA
1 AAGAAAACCAGAATA
*
40369181 AAGAAATCCAG-ATA
1 AAGAAAACCAGAATA
*
40369195 GA-AAAACCAGAATA
1 AAGAAAACCAGAATA
*
40369209 AAGAAATCCAGAATA
1 AAGAAAACCAGAATA
40369224 AAGAAA
1 AAGAAA
40369230 CCCAAGATAC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 7 0.17
14 16 0.39
15 18 0.44
ACGTcount: A:0.63, C:0.13, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAAACCAGAATA
Found at i:40369221 original size:15 final size:15
Alignment explanation
Indices: 40369167--40369229 Score: 80
Period size: 14 Copynumber: 4.4 Consensus size: 15
40369157 TAAAGATAAC
*
40369167 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
40369181 AAGAAATCCAG-ATA
1 AAGAAATCCAGAATA
40369195 GAA-AAA-CCAGAATA
1 -AAGAAATCCAGAATA
40369209 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
40369224 AAGAAA
1 AAGAAA
40369230 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
13 6 0.14
14 20 0.47
15 17 0.40
ACGTcount: A:0.63, C:0.13, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:40372266 original size:49 final size:49
Alignment explanation
Indices: 40372193--40372378 Score: 257
Period size: 49 Copynumber: 3.8 Consensus size: 49
40372183 TAGCCGAAGC
*
40372193 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
40372242 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCA-AT
* **
40372292 TTTC-GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
40372340 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
40372379 CGTGACCTCA
Statistics
Matches: 117, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
48 5 0.04
49 108 0.92
50 4 0.03
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:40372372 original size:98 final size:98
Alignment explanation
Indices: 40372198--40372383 Score: 345
Period size: 98 Copynumber: 1.9 Consensus size: 98
40372188 GAAGCTATCT
*
40372198 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
40372263 TGCACTTAGTACTACACACGTGATCACATTTTC
66 TGCACTTAGTACTACACACGTGATCACATTTTC
* *
40372296 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
40372361 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
40372384 CCTCACAATA
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 85 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (98 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACATTTTC
Found at i:40376019 original size:16 final size:16
Alignment explanation
Indices: 40376000--40376030 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
40375990 ATTGTTTTAA
40376000 TACAAAATTTCACTTT
1 TACAAAATTTCACTTT
*
40376016 TACATAATTTCACTT
1 TACAAAATTTCACTT
40376031 ACTCCATTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (16 bp):
TACAAAATTTCACTTT
Found at i:40376293 original size:50 final size:50
Alignment explanation
Indices: 40376230--40376775 Score: 450
Period size: 50 Copynumber: 10.9 Consensus size: 50
40376220 ACCGAAGCTC
* *
40376230 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATATGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * * * * *
40376280 TCTGGTACACATAGTAGCCTACACTTAGTATTGCACACGTAACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
** * * * ** *
40376330 TCTAATACACGTAGTAGCTTGCACTCAGTACTACACATGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* ** * *
40376382 -CGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * ** * * * *
40376431 TCTGGTACACGTTGTAGCCTACACTTAGTACTAGTCACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** *
40376481 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* ** * *
40376533 -CCGGTACGTATAGTAGCCTGCACTTAGTACTACACAAGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * * * *
40376582 TCTGGTACACGTAGTAGCGTGCACTTAGTACTACACACGCGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * ** *
40376632 TTTGATACGCATAGTAGCCTGCACTTAGTACTACACACGTGACAGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC-CTA-TCAA
* * * *
40376684 -CGGGTACGCATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * *
40376733 TCTGGTACACGTAGTAGCCTGCACTTTGTACTAAACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
40376776 TCAAAATGGA
Statistics
Matches: 379, Mismatches: 108, Indels: 18
0.75 0.21 0.04
Matches are distributed among these distances:
49 9 0.02
50 258 0.68
51 109 0.29
52 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:40376442 original size:101 final size:100
Alignment explanation
Indices: 40376230--40376775 Score: 434
Period size: 101 Copynumber: 5.4 Consensus size: 100
40376220 ACCGAAGCTC
* * ** ** *
40376230 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATATGAC-CTATCAATCTGGTACACATAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACAGAATCAA-CGGGTACACATAG
* * * * ** * * *
40376294 TAGCCTACACTTAGTATTGCACACGTAACTTAACCA
65 TAGCCTGCACTTAGTACTACACATGCGACCTATCAA
** * * * * **
40376330 TCTAATACACGTAGTAGCTTGCACTCAGTACTACACATGTGATC-GAAGTTAACGGGTATGCATA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CAGAA-TCAACGGGTACACATA
*
40376394 GTAGCTTGCACTTAGTACTACACATGCGACCTATCAA
64 GTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * ** ** * * * *
40376431 TCTGGTACACGTTGTAGCCTACACTTAGTACTAGTCACGTGACTTAACCATCTGATACACATAGT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACAGAATCAACGGGTACACATAGT
* ** *
40376496 AGCCTGCACTTAGTACTACACATGTGATCGAAGTTAA
66 AGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* *** * * ** * *
40376533 -CCGGTACGTATAGTAGCCTGCACTTAGTACTACACAAGCGAC-CTATCAATCTGGTACACGTAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACAGAATCAA-CGGGTACACATAG
* * * * *
40376596 TAGCGTGCACTTAGTACTACACACGCGACTTAACCA
65 TAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * *
40376632 TTTGATACGCATAGTAGCCTGCACTTAGTACTACACACGTGACAGAAGTTAACGGGTACGCATAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACAGAA-TCAACGGGTACACATAG
*
40376697 CAGCCTGCACTTAGTACTACACATGCGACCTATCAA
65 TAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* *
40376733 TCTGGTACACGTAGTAGCCTGCACTTTGTACTAAACACGTGAC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
40376776 TCAAAATGGA
Statistics
Matches: 344, Mismatches: 93, Indels: 17
0.76 0.20 0.04
Matches are distributed among these distances:
99 1 0.00
100 113 0.33
101 221 0.64
102 9 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACAGAATCAACGGGTACACATAGT
AGCCTGCACTTAGTACTACACATGCGACCTATCAA
Found at i:40376489 original size:151 final size:151
Alignment explanation
Indices: 40376233--40376776 Score: 813
Period size: 151 Copynumber: 3.6 Consensus size: 151
40376223 GAAGCTCTCT
** *
40376233 GGTACGCATAGTAGCCTGCACTTAGTACTACACATATGACCTATCAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * * *
40376298 CTACACTTAGTA-TTGCACACGTAACTTAACCATCTAATACACGTAGTAGCTTGCACTCAGTACT
66 CTACACTTAGTACTAG-ACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACT
40376362 ACACATGTGATCGAAGTTAACG
130 ACACATGTGATCGAAGTTAACG
* * *
40376384 GGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTTGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
40376449 CTACACTTAGTACTAGTCACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTA
66 CTACACTTAGTACTAGACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTA
*
40376514 CACATGTGATCGAAGTTAACC
131 CACATGTGATCGAAGTTAACG
* *
40376535 GGTACGTATAGTAGCCTGCACTTAGTACTACACAAGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * * *
40376600 GTGCACTTAGTACTACACACGCGACTTAACCATTTGATACGCATAGTAGCCTGCACTTAGTACTA
66 CTACACTTAGTACTAGACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTA
*
40376665 CACACGTGA-CAGAAGTTAACG
131 CACATGTGATC-GAAGTTAACG
*
40376686 GGTACGCATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
40376751 CTGCACTTTGTACTAAACACGTGACT
66 CTACACTTAGTACTAGACACGTGACT
40376777 CAAAATGGAT
Statistics
Matches: 356, Mismatches: 35, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
150 1 0.00
151 353 0.99
152 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTACACTTAGTACTAGACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTA
CACATGTGATCGAAGTTAACG
Found at i:40379731 original size:15 final size:15
Alignment explanation
Indices: 40379711--40379749 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
40379701 AAAACCAGGC
40379711 TCCAAGAT-AGAGAAA
1 TCCAAGATAAG-GAAA
40379726 TCCAAGATAAGGAAA
1 TCCAAGATAAGGAAA
40379741 TCCAAGATA
1 TCCAAGATA
40379750 CAATATCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (15 bp):
TCCAAGATAAGGAAA
Found at i:40383285 original size:16 final size:16
Alignment explanation
Indices: 40383266--40383297 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
40383256 AATTGTTTTA
40383266 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
40383282 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
40383298 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:40383576 original size:50 final size:50
Alignment explanation
Indices: 40383508--40383781 Score: 207
Period size: 50 Copynumber: 5.4 Consensus size: 50
40383498 CTTGTACACA
* * *
40383508 TAGTAGCTTGCCCTTAGTACTACACATACGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACGCG
** ** * *
40383558 TAGTAGCCTAG-ACTTAGTACTACACACGTGATCGAAGT-T-AA-CAAGTATGCA
1 TAGTAGCCT-GCACTTAGTACTACACA--T-A-CGACCTATCAATCTGGTACGCG
** * * * * *
40383609 TAGTAGCCTGCACTTAGTACTACACACGCGACTTAACCATTTGATACGCG
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACGCG
* * * * * * * *
40383659 TAGTAGCTTGCACTTAGTATTACACACATGACCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATACGACC-TA-TCAATCTGGTACGCG
* * *
40383710 TAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACGCG
40383760 TAGTAGCCTGCACTTAGTACTA
1 TAGTAGCCTGCACTTAGTACTA
40383782 AACGTGTGAC
Statistics
Matches: 166, Mismatches: 46, Indels: 24
0.70 0.19 0.10
Matches are distributed among these distances:
47 4 0.02
49 4 0.02
50 84 0.51
51 64 0.39
52 4 0.02
53 2 0.01
54 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACGCG
Found at i:40383624 original size:51 final size:49
Alignment explanation
Indices: 40383558--40383735 Score: 166
Period size: 51 Copynumber: 3.5 Consensus size: 49
40383548 CTGGTACACG
*
40383558 TAGTAGCCTAG-ACTTAGTACTACACACGTGATCGAAGTTAACAAGTATGCA
1 TAGTAGCCT-GCACTTAGTACTACACAC-TGA-CGAAGTTAACAAGTACGCA
* * *
40383609 TAGTAGCCTGCACTTAGTACTACACAC-G-CG-ACTTAACCATTTGATACGCG
1 TAGTAGCCTGCACTTAGTACTACACACTGACGAAGTTAA-CA--AG-TACGCA
* * **
40383659 TAGTAGCTTGCACTTAGTATTACACACATGACCGAAGTTAACGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACAC-TGA-CGAAGTTAACAAGTACGCA
*
40383710 TAGCAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
40383736 TGCGACCTAT
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
46 5 0.05
47 4 0.04
49 2 0.02
50 30 0.29
51 53 0.51
52 2 0.02
54 3 0.03
55 5 0.05
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACTGACGAAGTTAACAAGTACGCA
Found at i:40383674 original size:101 final size:101
Alignment explanation
Indices: 40383501--40383781 Score: 366
Period size: 101 Copynumber: 2.8 Consensus size: 101
40383491 AAGCTCTCTT
* * * *
40383501 GTACACATAGTAGCTTGCCCTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAG-C
* * *
40383566 TAG-ACTTAGTACTACACACGTGATCGAAGTTAACAA
65 TTGCACTTAGTACTACACACATGACCGAAGTTAACAA
* * * * * * * *
40383602 GTATGCATAGTAGCCTGCACTTAGTACTACACACGCGACTTAACCATTTGATACGCGTAGTAGCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCT
* **
40383667 TGCACTTAGTATTACACACATGACCGAAGTTAACGG
66 TGCACTTAGTACTACACACATGACCGAAGTTAACAA
* *
40383703 GTACGCATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCT
40383768 TGCACTTAGTACTA
66 TGCACTTAGTACTA
40383782 AACGTGTGAC
Statistics
Matches: 150, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
100 3 0.02
101 147 0.98
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (101 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCT
TGCACTTAGTACTACACACATGACCGAAGTTAACAA
Found at i:40386181 original size:43 final size:43
Alignment explanation
Indices: 40386115--40386287 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
40386105 AGCTCATACA
* * * *
40386115 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * *
40386157 ATGCCACTGTCCTAGACAGGGTCTTACACGTAATCGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACATATCG
* * *
40386200 ATGCAAATGTCCCAGACATGGTCTTACACATAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
40386243 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
40386286 AT
1 AT
40386288 AATCCTAATG
Statistics
Matches: 104, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
42 7 0.07
43 95 0.91
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:40389029 original size:80 final size:80
Alignment explanation
Indices: 40388945--40389093 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
40388935 TATGGTAACC
* * * *
40388945 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
40389009 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
40389025 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
40389090 CCGG
66 CCGG
40389094 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:40389035 original size:40 final size:38
Alignment explanation
Indices: 40388986--40389093 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
40388976 ATCACGATTT
*
40388986 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
40389026 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
40389066 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
40389094 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:40397147 original size:80 final size:80
Alignment explanation
Indices: 40397063--40397211 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
40397053 TATGGTAACC
* * * *
40397063 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
40397127 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
40397143 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
40397208 CCGG
66 CCGG
40397212 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:40397153 original size:40 final size:38
Alignment explanation
Indices: 40397104--40397211 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
40397094 ATCACGATTT
*
40397104 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
40397144 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
40397184 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
40397212 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:40400462 original size:80 final size:80
Alignment explanation
Indices: 40400378--40400526 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
40400368 TATGGTAACC
* * * *
40400378 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
40400442 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
40400458 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
40400523 CCGG
66 CCGG
40400527 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:40400468 original size:40 final size:38
Alignment explanation
Indices: 40400419--40400526 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
40400409 ATCACGATTT
*
40400419 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
40400459 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
40400499 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
40400527 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:40408579 original size:80 final size:80
Alignment explanation
Indices: 40408495--40408643 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
40408485 TATGGTAACC
* * * *
40408495 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
40408559 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
40408575 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
40408640 CCGG
66 CCGG
40408644 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:40408585 original size:40 final size:38
Alignment explanation
Indices: 40408536--40408643 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
40408526 ATCACGATTT
*
40408536 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
40408576 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
40408616 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
40408644 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:40425833 original size:43 final size:43
Alignment explanation
Indices: 40425692--40425862 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 43
40425682 CACAAAGCTC
* * *
40425692 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-
1 ATACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACA
* * * * **
40425733 ATATCGATGTCACTATCCCAGACAGGGTCTTACACGTAAT-TGA
1 ATA-CAATGCCAATATCCCAGACATGGTCTTACACGTAATCACA
* * * * *
40425776 TTAACGATGGCAATGTCCCAGACATGGTCTTACACATAATCACA
1 AT-ACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACA
* * * *
40425820 ATACAATGCCAATGTCCCAAACATGGCCTTACATGTAATCACA
1 ATACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACA
40425863 TCCTAATGAT
Statistics
Matches: 101, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
41 3 0.03
42 5 0.05
43 90 0.89
44 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
ATACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACA
Found at i:40430199 original size:50 final size:50
Alignment explanation
Indices: 40430139--40430354 Score: 211
Period size: 50 Copynumber: 4.3 Consensus size: 50
40430129 ATCACTCAAT
* * * * * *
40430139 TGGCCTAATATAGAAGATCAAATTTAATATCACATATGTGCTTACCTATA
1 TGGCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATA
** * * *
40430189 TGGCCGAATATGGAAGATCAAATTTAACATCACATATGTACTTACTTATA
1 TGGCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATA
* * * * *
40430239 TGGCCGAATATACAA-ATTCAAATATAATATCGCATTTGTGCATACCT-TCT
1 TGGCCGAATATACAAGA-TCAAATATAACATCACATATGTACATACCTAT-A
* * * * *
40430289 TGGCCGAATATTCAAGATCCAATACAACAGCACATATGTACATACCTATG
1 TGGCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATA
40430339 TGGCCGAATATACAAG
1 TGGCCGAATATACAAG
40430355 GTCATTTAGC
Statistics
Matches: 137, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
49 2 0.01
50 133 0.97
51 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (50 bp):
TGGCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATA
Found at i:40430260 original size:100 final size:100
Alignment explanation
Indices: 40430139--40430354 Score: 256
Period size: 100 Copynumber: 2.2 Consensus size: 100
40430129 ATCACTCAAT
* * * * *
40430139 TGGCCTAATATAGAAGATCAAATTTAATATCACATATGTGCTTACCTAT-ATGGCCGAATATGGA
1 TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCT-TCATGGCCGAATATGCA
** * * *
40430203 AGATCAAATTTAACATCACATATGTACTTACTTATA
65 AGATCAAATACAACAGCACATATGTACATACCTATA
* * * *
40430239 TGGCCGAATATACAA-ATTCAAATATAATATCGCATTTGTGCATACCTTCTTGGCCGAATATTCA
1 TGGCCGAATATACAAGA-TCAAATATAATATCACATATGTGCATACCTTCATGGCCGAATATGCA
* *
40430303 AGATCCAATACAACAGCACATATGTACATACCTATG
65 AGATCAAATACAACAGCACATATGTACATACCTATA
40430339 TGGCCGAATATACAAG
1 TGGCCGAATATACAAG
40430355 GTCATTTAGC
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
99 2 0.02
100 95 0.98
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (100 bp):
TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTTCATGGCCGAATATGCAA
GATCAAATACAACAGCACATATGTACATACCTATA
Found at i:40438332 original size:46 final size:46
Alignment explanation
Indices: 40438274--40438442 Score: 268
Period size: 46 Copynumber: 3.7 Consensus size: 46
40438264 TGATATGTGT
* ** *
40438274 GCTACTGTAAGACATGTCTGGGACATGCATCGGC-TACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-GATGAGA
*
40438320 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGA
*
40438366 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGA
40438412 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
40438443 AGCCTGGAGA
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
46 113 0.98
47 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGA
Found at i:40438453 original size:46 final size:46
Alignment explanation
Indices: 40438274--40438467 Score: 264
Period size: 46 Copynumber: 4.2 Consensus size: 46
40438264 TGATATGTGT
* ** * *
40438274 GCTACTGTAAGACATGTCTGGGACATGCATCGGC-TACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-GATGAAA
* *
40438320 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAAA
40438366 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAAA
* * * *
40438412 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTGGAGATAACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGA-AA
40438459 GCTAGTGTA
1 GCTAGTGTA
40438468 TGTGACAGCC
Statistics
Matches: 135, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
46 122 0.90
47 13 0.10
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAAA
Found at i:40440286 original size:40 final size:40
Alignment explanation
Indices: 40440231--40440440 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
40440221 AACATTGGAA
40440231 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
40440271 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
40440311 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
40440351 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
40440390 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
40440431 CTATATCCGG
1 ATATATCCGG
40440441 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:40448418 original size:40 final size:40
Alignment explanation
Indices: 40448363--40448572 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
40448353 AACATTGGAA
40448363 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
40448403 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
40448443 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
40448483 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
40448522 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
40448563 CTATATCCGG
1 ATATATCCGG
40448573 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:40450088 original size:49 final size:49
Alignment explanation
Indices: 40449964--40450096 Score: 144
Period size: 49 Copynumber: 2.7 Consensus size: 49
40449954 CTTGTTATTT
*
40449964 GTCAGTGTAAGAACTATTTGGGACATGGCATCGACACCGATGGATAAGAA
1 GTCAGTGTAAGACCTATTTGGGACATGGCATCGACACCGAT-GATAAGAA
* * * * * * * * *
40450014 -CCAGTGTATGACCTGTCTAGAACATGACATCGACATCGAT-ATATGAAA
1 GTCAGTGTAAGACCTATTTGGGACATGGCATCGACACCGATGATAAG-AA
40450062 GTCAGTGTAAGACCTATTTGGGACATGGCATCGAC
1 GTCAGTGTAAGACCTATTTGGGACATGGCATCGAC
40450097 TTTGACGTAC
Statistics
Matches: 64, Mismatches: 17, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
47 4 0.06
48 2 0.03
49 58 0.91
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (49 bp):
GTCAGTGTAAGACCTATTTGGGACATGGCATCGACACCGATGATAAGAA
Found at i:40452874 original size:28 final size:27
Alignment explanation
Indices: 40452842--40452922 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
40452832 TTAGAATACT
*
40452842 TTAGTTTACTAAAATTA-TCGAAATACCC
1 TTAGTTT-CTAAAAATACT-GAAATACCC
*
40452870 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACTGAAATACCC
* * *
40452897 -TCGATTTGTAAAATTACTGAAATACC
1 TTAG-TTTCTAAAAATACTGAAATACC
40452923 TTCGACTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.04
27 37 0.79
28 8 0.17
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACTGAAATACCC
Found at i:40452881 original size:27 final size:28
Alignment explanation
Indices: 40452851--40452940 Score: 107
Period size: 27 Copynumber: 3.3 Consensus size: 28
40452841 TTTAGTTTAC
40452851 TAAAATTA-TCGAAATACCCTTAG-TTTG
1 TAAAATTACT-GAAATACCCTTAGATTTG
* *
40452878 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* *
40452905 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
40452932 TAAAATTAC
1 TAAAATTAC
40452941 CAAAGTACCC
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.07
27 51 0.91
28 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (28 bp):
TAAAATTACTGAAATACCCTTAGATTTG
Found at i:40452965 original size:27 final size:27
Alignment explanation
Indices: 40452935--40452995 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
40452925 CGACTTGTAA
40452935 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
* **** *
40452962 AATTATCGTTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
40452989 AATTACC
1 AATTACC
40452996 GTTTTACCCC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:40452998 original size:27 final size:27
Alignment explanation
Indices: 40452946--40453155 Score: 262
Period size: 27 Copynumber: 7.8 Consensus size: 27
40452936 ATTACCAAAG
* *
40452946 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
40452973 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
40453000 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
40453027 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
40453054 TACCCTCGATTTACAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
40453081 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
40453108 TACCCTTGATTTACA-AATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
40453134 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
40453156 TAAAATACCC
Statistics
Matches: 166, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
26 26 0.16
27 139 0.84
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:40453164 original size:27 final size:27
Alignment explanation
Indices: 40453054--40453357 Score: 122
Period size: 27 Copynumber: 11.2 Consensus size: 27
40453044 ATTACCGTTT
* ***
40453054 TACCCTCGATTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-AAA
* * ***
40453081 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* ***
40453108 TACCCTTGATTTAC-AAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
40453134 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
40453161 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* **
40453188 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* * *** **
40453215 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
40453242 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
40453269 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
40453296 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
40453325 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
40453352 TACCCT
1 TACCCT
40453358 TGGTTTGTAG
Statistics
Matches: 227, Mismatches: 34, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
26 27 0.12
27 173 0.76
28 8 0.04
29 19 0.08
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:40453181 original size:80 final size:81
Alignment explanation
Indices: 40452892--40453182 Score: 196
Period size: 81 Copynumber: 3.6 Consensus size: 81
40452882 AATACTGAAA
** * * * * * * *** * *
40452892 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTACAAAATTACAGAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
* *
40452957 TACAGAATTATCGTTT
66 TACAGAATTACCATTT
* * * *** * * *
40452973 TACCCCCGATTTACATAATTACCGTTTTACCCCT-GATTTACATAATTA-TCGTTTTACCCTCGA
1 TACCCTCGATTTACAAAATTACAGAAATA-CCCTAGATTTATAAAATTACT-ATTTTACCCTCGA
*
40453036 CTTACAGAATTACCGTTT
64 CTTACAGAATTACCATTT
* *** * * * *
40453054 TACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACAGAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
*
40453119 TACA-AATTACTATTT
66 TACAGAATTACCATTT
*
40453134 TACCCTCGATTTACAAAATTACTA-AAATACCCTTAG-TTTGTAAAATTAC
1 TACCCTCGATTTACAAAATTAC-AGAAATACCC-TAGATTTATAAAATTAC
40453183 CAAAATACCC
Statistics
Matches: 166, Mismatches: 38, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
80 50 0.30
81 112 0.67
82 4 0.02
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACAGAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
TACAGAATTACCATTT
Found at i:40453206 original size:54 final size:54
Alignment explanation
Indices: 40453134--40453273 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
40453124 ATTACTATTT
* **
40453134 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
40453188 TACCC-CTAGTTTGTAAAATTA-TCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACT-AAAATACCCTTAGTTTGTAAAATTACCAAAA
*
40453242 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACTAAAATACCC
40453274 CTGATTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.03
54 70 0.96
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:40453235 original size:81 final size:79
Alignment explanation
Indices: 40453149--40453410 Score: 215
Period size: 81 Copynumber: 3.2 Consensus size: 79
40453139 TCGATTTACA
40453149 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAA
1 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTA-CAAA
40453214 ATACCCTTGGTTTGTG
64 ATACCCTTGGTTTGTG
** * * *
40453230 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATT-TACAAAGTTACAGA
1 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGTTTGTA-AAA-TTACA-A
* * *
40453294 AATACCCTTGACTTTCTAA
63 AATACCCTTG-GTTTGT-G
* * ** ** * * *
40453313 AAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAA
1 AAATTACTA-AAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTA-CAA
* **
40453377 AACACCCTT-GTAGGATG
63 AATACCCTTGGTTTG-TG
*
40453394 AAATGACTAAAATACCC
1 AAATTACTAAAATACCC
40453411 CTATTAGGTA
Statistics
Matches: 140, Mismatches: 30, Indels: 22
0.73 0.16 0.11
Matches are distributed among these distances:
79 2 0.01
80 8 0.06
81 69 0.49
82 7 0.05
83 46 0.33
84 6 0.04
85 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (79 bp):
AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACAAAAT
ACCCTTGGTTTGTG
Found at i:40453360 original size:27 final size:27
Alignment explanation
Indices: 40453108--40453363 Score: 144
Period size: 27 Copynumber: 9.4 Consensus size: 27
40453098 ATTACTATTT
* ***
40453108 TACCCTTGATTTAC-AAATTACTATTT
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
40453134 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* ** *
40453161 TACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * **
40453188 TACCCCTAGTTTGTAAAATTA-TCAAAA
1 TACCCTTGGTTTACAAAATTACT-AAAA
*** **
40453215 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*** ** *
40453242 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * *
40453269 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
*
40453296 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
40453325 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
40453352 TACCCTTGGTTT
1 TACCCTTGGTTT
40453364 GTAGATTTAC
Statistics
Matches: 185, Mismatches: 35, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
26 14 0.08
27 145 0.78
28 7 0.04
29 19 0.10
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:40453481 original size:27 final size:27
Alignment explanation
Indices: 40453404--40453481 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
40453394 AAATGACTAA
*
40453404 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* * *
40453431 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
40453458 AATACCCCTATATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
40453482 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:40454667 original size:25 final size:25
Alignment explanation
Indices: 40454638--40454685 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
40454628 CTATAACATG
* * *
40454638 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
40454663 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
40454686 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:40454769 original size:11 final size:11
Alignment explanation
Indices: 40454733--40454788 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
40454723 CATGGTATGT
40454733 ATGATATGCAC
1 ATGATATGCAC
* *
40454744 ATGACATG--T
1 ATGATATGCAC
40454753 ATGATATGCAC
1 ATGATATGCAC
*
40454764 ATGATATG--T
1 ATGATATGCAC
40454773 ATGATATGCAC
1 ATGATATGCAC
40454784 ATGAT
1 ATGAT
40454789 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:40454788 original size:20 final size:20
Alignment explanation
Indices: 40454722--40454788 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
40454712 ATTTTGATAA
*
40454722 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
40454742 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
40454762 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
40454782 ACATGAT
1 ACATGAT
40454789 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:40454868 original size:23 final size:23
Alignment explanation
Indices: 40454838--40455051 Score: 347
Period size: 23 Copynumber: 9.1 Consensus size: 23
40454828 AGGAAGTGAA
40454838 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
40454861 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
40454885 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
40454908 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
40454932 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
40454956 AAAGGGCTTATACCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
40454979 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
40455002 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
40455025 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
40455049 AAA
1 AAA
40455052 AGAGGCTAGG
Statistics
Matches: 181, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
23 92 0.51
24 89 0.49
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:40454893 original size:24 final size:23
Alignment explanation
Indices: 40454837--40455073 Score: 341
Period size: 24 Copynumber: 10.0 Consensus size: 23
40454827 GAGGAAGTGA
40454837 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
40454860 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
40454883 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
40454907 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
40454930 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
40454954 CAAAAGGGCTTATACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
40454978 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
40455001 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
40455025 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
40455049 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
40455073 A
1 A
40455074 TGATAAAGCA
Statistics
Matches: 198, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
23 87 0.44
24 101 0.51
25 10 0.05
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:40454906 original size:47 final size:47
Alignment explanation
Indices: 40454837--40455051 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
40454827 GAGGAAGTGA
40454837 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
40454884 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
40454931 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
40454978 TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
40455025 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
40455052 AGAGGCTAGG
Statistics
Matches: 159, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
46 21 0.13
47 117 0.74
48 21 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:40460950 original size:22 final size:20
Alignment explanation
Indices: 40460906--40460943 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
40460896 TTGATTGTCC
*
40460906 ATATTTTTAATATAATCTAT
1 ATATATTTAATATAATCTAT
40460926 ATATATTTAATATAATCT
1 ATATATTTAATATAATCT
40460944 TAATATAGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATATTTAATATAATCTAT
Found at i:40470972 original size:19 final size:19
Alignment explanation
Indices: 40470944--40470982 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
40470934 AGAGCGAAAG
40470944 AAACGAG-AAACGGGCCAA
1 AAACGAGAAAACGGGCCAA
*
40470962 AAACGGAGAAAATGGGCCAA
1 AAAC-GAGAAAACGGGCCAA
40470982 A
1 A
40470983 GTACGAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.51, C:0.18, G:0.28, T:0.03
Consensus pattern (19 bp):
AAACGAGAAAACGGGCCAA
Found at i:40474289 original size:27 final size:27
Alignment explanation
Indices: 40474218--40474360 Score: 150
Period size: 27 Copynumber: 5.3 Consensus size: 27
40474208 TGGAGGAAGC
* * *
40474218 GTCCTAGTGGCTATGCCACAATTTATCT
1 GTCCTGGTGGCTCTGCCAC-ATATATCT
* *
40474246 AAT-CTGGTGGCTCTGCCACATATATTT
1 -GTCCTGGTGGCTCTGCCACATATATCT
*
40474273 GTCCTGGTGGCTATGCCACA-ATTATCT
1 GTCCTGGTGGCTCTGCCACATA-TATCT
40474300 GAT-CTGGTGGCTCTGCCACATATATCT
1 G-TCCTGGTGGCTCTGCCACATATATCT
*
40474327 GTTCTGGTGGCTCTGCCACA-ATATCT
1 GTCCTGGTGGCTCTGCCACATATATCT
40474353 GTACCTGG
1 GT-CCTGG
40474361 CGACTTCGTC
Statistics
Matches: 98, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
26 11 0.11
27 70 0.71
28 16 0.16
29 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
GTCCTGGTGGCTCTGCCACATATATCT
Found at i:40474316 original size:54 final size:54
Alignment explanation
Indices: 40474218--40474353 Score: 211
Period size: 54 Copynumber: 2.5 Consensus size: 54
40474208 TGGAGGAAGC
* * *
40474218 GTCCTAGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATTT
1 GTCCTGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCT
40474273 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
40474327 GTTCTGGTGGCTCTGCCACAA-TATCTG
1 GTCCTGGTGGCTATGCCACAATTATCTG
40474354 TACCTGGCGA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 6 0.08
54 50 0.66
55 20 0.26
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:40482196 original size:27 final size:27
Alignment explanation
Indices: 40482166--40482296 Score: 153
Period size: 27 Copynumber: 4.9 Consensus size: 27
40482156 CTGGTAGATA
*
40482166 TGCCACAATTTATCTG-TCTGGTGGCTC
1 TGCCAC-ATATATCTGATCTGGTGGCTC
*
40482193 TGCCACATATATCTG-TCATGGTGGCTA
1 TGCCACATATATCTGATC-TGGTGGCTC
*
40482220 TGCCACA-ATTATCTGATCTGGTGGTTC
1 TGCCACATA-TATCTGATCTGGTGGCTC
*
40482247 TGCCACATATATCTGTTCTGGTGGCTC
1 TGCCACATATATCTGATCTGGTGGCTC
*
40482274 TGCCATA-ATATCTGTATCTGGTG
1 TGCCACATATATCTG-ATCTGGTG
40482297 ACTTCGTCAC
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
26 18 0.20
27 70 0.77
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
TGCCACATATATCTGATCTGGTGGCTC
Found at i:40482249 original size:54 final size:54
Alignment explanation
Indices: 40482164--40482296 Score: 191
Period size: 54 Copynumber: 2.5 Consensus size: 54
40482154 TCCTGGTAGA
40482164 TATGCCACAATTTATCTG-TCTGGTGGCTCTGCCACATATATCTG-TCATGGTGGC
1 TATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC-TGGTGGC
*
40482218 TATGCCACAATTATCTGATCTGGTGGTTCTGCCACATATATCTGTTCTGGTGGC
1 TATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGC
* *
40482272 TCTGCCATAA-TATCTGTATCTGGTG
1 TATGCCACAATTATCTG-ATCTGGTG
40482297 ACTTCGTCAC
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
53 13 0.18
54 58 0.79
55 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
TATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGC
Found at i:40482308 original size:81 final size:80
Alignment explanation
Indices: 40482166--40482314 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 80
40482156 CTGGTAGATA
* *
40482166 TGCCACAATTTATCTGTCTGGTGGCTCTGCCACATATATCTGTCATGGTGGCTATGCCACAATTA
1 TGCCACAATATATCTGTCTGGTGGCTCTGCCACATATATCTGTCATGGTGACTATGCCACAA-TA
40482231 TCTGATCTGGTGGTTC
65 TCTGATCTGGTGGTTC
* *
40482247 TGCCAC-ATATATCTGTTCTGGTGGCTCTGCCATA-ATATCTGT-ATCTGGTGACT-TCGTCACA
1 TGCCACAATATATCTG-TCTGGTGGCTCTGCCACATATATCTGTCA--TGGTGACTAT-GCCACA
40482308 ATATCTG
62 ATATCTG
40482315 GCAGCCTCAC
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
79 1 0.02
80 23 0.38
81 36 0.60
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (80 bp):
TGCCACAATATATCTGTCTGGTGGCTCTGCCACATATATCTGTCATGGTGACTATGCCACAATAT
CTGATCTGGTGGTTC
Found at i:40482310 original size:27 final size:27
Alignment explanation
Indices: 40482166--40482314 Score: 102
Period size: 27 Copynumber: 5.5 Consensus size: 27
40482156 CTGGTAGATA
40482166 TGCCACAATTTATCTG--TCTGGTGGC-TC
1 TGCCACAA--TATCTGTATCTGGT-GCTTC
*
40482193 TGCCACATATATCTG--TCATGGTGGC-TA
1 TGCCACA-ATATCTGTATC-TGGT-GCTTC
*
40482220 TGCCACAATTATCTG-ATCTGGTGGTTC
1 TGCCACAA-TATCTGTATCTGGTGCTTC
40482247 TGCCACATATATCTGT-TCTGGTGGC-TC
1 TGCCACA-ATATCTGTATCTGGT-GCTTC
*
40482274 TGCCATAATATCTGTATCTGGTGACTTC
1 TGCCACAATATCTGTATCTGGTG-CTTC
*
40482302 -GTCACAATATCTG
1 TGCCACAATATCTG
40482315 GCAGCCTCAC
Statistics
Matches: 104, Mismatches: 7, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
26 19 0.18
27 78 0.75
28 7 0.07
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGCTTC
Found at i:40483974 original size:48 final size:48
Alignment explanation
Indices: 40483856--40484071 Score: 217
Period size: 46 Copynumber: 4.6 Consensus size: 48
40483846 TGATATGTGT
* * * *
40483856 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-TTATGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-ACAA
* * *
40483902 GCCAGTGCAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * * * * ** *
40483950 GCCAGTTTAACACATGGCTGGGACATGCATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
*
40483996 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
*
40484044 GCTAGTGTAAGACCATGCCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
40484072 GCGTCAGCTT
Statistics
Matches: 136, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
46 67 0.49
47 4 0.03
48 51 0.38
49 14 0.10
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
Found at i:40484008 original size:94 final size:95
Alignment explanation
Indices: 40483898--40484071 Score: 269
Period size: 94 Copynumber: 1.8 Consensus size: 95
40483888 GCCACATTAT
* *
40483898 GAGAGCCAGTGCAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCAGTTTAACA-
1 GAGAGCCAGTGCAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAACAC
*
40483962 CATGGCTGGGACATGCATCGGCATTGAGAC
66 CATGCCTGGGACATGCATCGGCATTGAGAC
* * * * *
40483992 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAGAC
1 GAGAGCCAGTGCAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAACAC
40484057 CATGCCTGGGACATG
66 CATGCCTGGGACATG
40484072 GCGTCAGCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
94 57 0.80
95 14 0.20
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (95 bp):
GAGAGCCAGTGCAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAACAC
CATGCCTGGGACATGCATCGGCATTGAGAC
Found at i:40489289 original size:40 final size:40
Alignment explanation
Indices: 40489230--40489371 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
40489220 AAATTGAATG
* * *
40489230 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
40489270 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
40489310 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
40489350 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
40489372 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:40489372 original size:40 final size:39
Alignment explanation
Indices: 40489269--40489397 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
40489259 TGCTGGAAAT
* * *
40489269 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
40489309 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
40489349 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
40489389 TATATCCGG
1 TATATCCGG
40489398 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:40497317 original size:39 final size:40
Alignment explanation
Indices: 40497259--40497359 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
40497249 AAATTGAATG
* *
40497259 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
40497298 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
40497338 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
40497360 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Done.