Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 147 of 410
Found at i:44596666 original size:40 final size:40
Alignment explanation
Indices: 44596621--44596788 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
44596611 CGGAATATAA
44596621 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * * *
44596661 CCGGATCGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
44596701 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
44596741 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
44596781 CCGGATAT
1 CCGGATAT
44596789 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:44600055 original size:38 final size:38
Alignment explanation
Indices: 44599948--44600106 Score: 228
Period size: 38 Copynumber: 4.1 Consensus size: 38
44599938 ATATTCGATG
44599948 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAT
* *
44599986 TATATCCGGGCTTAAAGGCCCGCAGGCTTCGTGCTAGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTAGTAT
* *
44600026 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAT
* * * *
44600064 TATATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAT
44600102 TATAT
1 TATAT
44600107 TCAGGCCTTC
Statistics
Matches: 109, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 69 0.63
39 10 0.09
40 30 0.28
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAT
Found at i:44600162 original size:43 final size:43
Alignment explanation
Indices: 44600104--44600215 Score: 170
Period size: 43 Copynumber: 2.6 Consensus size: 43
44600094 GCTGGTATTA
*
44600104 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATG
* * *
44600147 TATTAAGGCATTCGTGCCTAGCAGGCTTCGTGCTGGTGATATG
1 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATG
* *
44600190 TATTCGGGCCTTCATGCCTAGCAGGC
1 TATTCAGGCCTTCGTGCCTAGCAGGC
44600216 GTAATGCCAG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.15, C:0.24, G:0.30, T:0.30
Consensus pattern (43 bp):
TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATG
Found at i:44602114 original size:23 final size:20
Alignment explanation
Indices: 44602071--44602115 Score: 63
Period size: 23 Copynumber: 2.1 Consensus size: 20
44602061 ATTTATCAAA
44602071 CATATTCCATGTTCATATAT
1 CATATTCCATGTTCATATAT
44602091 CATATTCGCATGTCTCCATATAT
1 CATATTC-CATGT-T-CATATAT
44602114 CA
1 CA
44602116 ATAACCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.32
21 5 0.23
22 1 0.05
23 9 0.41
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (20 bp):
CATATTCCATGTTCATATAT
Found at i:44602457 original size:66 final size:67
Alignment explanation
Indices: 44602382--44602511 Score: 217
Period size: 67 Copynumber: 2.0 Consensus size: 67
44602372 CTTTTCAGAG
*
44602382 AGCACACTCCTACGAACCTCATTTCTTACA-CAGGATTACCAATCTAGGCTAAATCCCCTGTAAA
1 AGCACACTCCTACGAACCTCATTTCTTACAGCAGGATTACCAATCCAGGCTAAATCCCCTGTAAA
44602446 AT
66 AT
* * *
44602448 AGCACACTCCTACGAACCTTATTTCTTACAGCAGGATTACCAGTCCATGCTAAATCCCCTGTAA
1 AGCACACTCCTACGAACCTCATTTCTTACAGCAGGATTACCAATCCAGGCTAAATCCCCTGTAA
44602512 CATATGCTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
66 29 0.49
67 30 0.51
ACGTcount: A:0.32, C:0.31, G:0.12, T:0.26
Consensus pattern (67 bp):
AGCACACTCCTACGAACCTCATTTCTTACAGCAGGATTACCAATCCAGGCTAAATCCCCTGTAAA
AT
Found at i:44604305 original size:37 final size:37
Alignment explanation
Indices: 44604255--44604327 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
44604245 ACGCTATGTG
44604255 GCCTCAGCCATTTTAAAATGGTCCATTTGCCCTTTTA
1 GCCTCAGCCATTTTAAAATGGTCCATTTGCCCTTTTA
44604292 GCCTCAGCCATTTTAAAATGGTCCATTTGCCCTTTT
1 GCCTCAGCCATTTTAAAATGGTCCATTTGCCCTTTT
44604328 TGTCTCCCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.38
Consensus pattern (37 bp):
GCCTCAGCCATTTTAAAATGGTCCATTTGCCCTTTTA
Found at i:44613082 original size:108 final size:108
Alignment explanation
Indices: 44612894--44613109 Score: 319
Period size: 108 Copynumber: 2.0 Consensus size: 108
44612884 CACGAGGGTG
* * *
44612894 TATCTTGAGGCTCTTATCAGGTTCTGCATGTACATCATCAGCCAGTTCAGTTTCAGCAGATTTTT
1 TATCTTGAGGCTCCTATCAGGTTCTGCAAGTACATCATCAGCCAGTTCAGTTTCAGCAGAATTTT
*
44612959 TTTCATTATACTTCT-CAAGAACAGTCGCATCTTTCAAATTACA
66 TTTCATTATACTTCTCCAA-AACAGTCGCATCTGTCAAATTACA
* * *
44613002 TATCTTGGGGCTCCTATCAGGTTCTGCAAGTACATTATCTGCCAGTTCAGTTTCAGCAGAATTTT
1 TATCTTGAGGCTCCTATCAGGTTCTGCAAGTACATCATCAGCCAGTTCAGTTTCAGCAGAATTTT
* *
44613067 TTTCATTAT-CATTCTCCAAAACAGTTGCATCTGTCAATTTACA
66 TTTCATTATAC-TTCTCCAAAACAGTCGCATCTGTCAAATTACA
44613110 CAACTGAGTT
Statistics
Matches: 97, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 93 0.96
109 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (108 bp):
TATCTTGAGGCTCCTATCAGGTTCTGCAAGTACATCATCAGCCAGTTCAGTTTCAGCAGAATTTT
TTTCATTATACTTCTCCAAAACAGTCGCATCTGTCAAATTACA
Found at i:44621194 original size:19 final size:20
Alignment explanation
Indices: 44621159--44621204 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
44621149 CGAAAAATGA
44621159 TTTCTGGAAAATAATTTATT
1 TTTCTGGAAAATAATTTATT
*
44621179 TTTCTGG-AAATGATTTATT
1 TTTCTGGAAAATAATTTATT
44621198 TTTCTGG
1 TTTCTGG
44621205 TGTTTAGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTATT
Found at i:44621345 original size:26 final size:25
Alignment explanation
Indices: 44621290--44621371 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 25
44621280 TTTACATATA
* * * *
44621290 TTAATAAATTTATATATATATATATA
1 TTAATAAATTTATATTTAAAT-TTTT
44621316 TTAATAAATTTATATTTTAAATTTTT
1 TTAATAAATTTATA-TTTAAATTTTT
44621342 TTAATAAATTTATACTTTAAATTGTTT
1 TTAATAAATTTATA-TTTAAATT-TTT
44621369 TTA
1 TTA
44621372 CATATATTGC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 38 0.78
27 11 0.22
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (25 bp):
TTAATAAATTTATATTTAAATTTTT
Found at i:44622645 original size:21 final size:21
Alignment explanation
Indices: 44622621--44622661 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
44622611 TCAATATCAT
44622621 TATCCAACCA-AATAAATTCAC
1 TATCCAA-CATAATAAATTCAC
*
44622642 TATCTAACATAATAAATTCA
1 TATCCAACATAATAAATTCA
44622662 ACAAGCTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (21 bp):
TATCCAACATAATAAATTCAC
Found at i:44622696 original size:21 final size:21
Alignment explanation
Indices: 44622631--44622696 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 21
44622621 TATCCAACCA
*
44622631 AATAAATTCACTATCTAACAT
1 AATAAATTCAATATCTAACAT
* *
44622652 AATAAATTCAACAAGCTTAAAACAT
1 AATAAATTCAA-TATC-T--AACAT
44622677 AATAAATTCAATATCTAACA
1 AATAAATTCAATATCTAACA
44622697 AATTTAAGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
21 14 0.39
22 2 0.06
23 2 0.06
24 2 0.06
25 16 0.44
ACGTcount: A:0.53, C:0.17, G:0.02, T:0.29
Consensus pattern (21 bp):
AATAAATTCAATATCTAACAT
Found at i:44622697 original size:32 final size:32
Alignment explanation
Indices: 44622655--44622736 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 32
44622645 CTAACATAAT
* *
44622655 AAATTCAACAAGCTTAAAACATAATAAATTCA
1 AAATCCAACAAACTTAAAACATAATAAATTCA
* * * * *
44622687 ATATCTAACAAATTTAAGACATAATAATTTCA
1 AAATCCAACAAACTTAAAACATAATAAATTCA
44622719 AAATCCAACAAAC-TAAAA
1 AAATCCAACAAACTTAAAA
44622737 TTTCAATATC
Statistics
Matches: 39, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
31 4 0.10
32 35 0.90
ACGTcount: A:0.56, C:0.16, G:0.02, T:0.26
Consensus pattern (32 bp):
AAATCCAACAAACTTAAAACATAATAAATTCA
Found at i:44622918 original size:12 final size:12
Alignment explanation
Indices: 44622901--44622948 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
44622891 TAGCAGACCA
44622901 TTCTCTTGCTTC
1 TTCTCTTGCTTC
*
44622913 TTCTCTT--TCC
1 TTCTCTTGCTTC
44622923 ATTCTCTTGCTTC
1 -TTCTCTTGCTTC
*
44622936 TTCTCTTTCTTC
1 TTCTCTTGCTTC
44622948 T
1 T
44622949 CGCTCCGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
10 2 0.07
11 7 0.23
12 19 0.63
13 2 0.07
ACGTcount: A:0.02, C:0.33, G:0.04, T:0.60
Consensus pattern (12 bp):
TTCTCTTGCTTC
Found at i:44622924 original size:23 final size:23
Alignment explanation
Indices: 44622898--44622944 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
44622888 TCTTAGCAGA
44622898 CCATTCTCTTGCTTCTTCTCTTT
1 CCATTCTCTTGCTTCTTCTCTTT
44622921 CCATTCTCTTGCTTCTTCTCTTT
1 CCATTCTCTTGCTTCTTCTCTTT
44622944 C
1 C
44622945 TTCTCGCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.04, C:0.36, G:0.04, T:0.55
Consensus pattern (23 bp):
CCATTCTCTTGCTTCTTCTCTTT
Found at i:44624843 original size:32 final size:32
Alignment explanation
Indices: 44624807--44624873 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
44624797 ACATGTTAGT
44624807 TTTGGATTTGTTTTTCTCTCTACCTGATTTTA
1 TTTGGATTTGTTTTTCTCTCTACCTGATTTTA
*
44624839 TTTGGATTTGTTTTTCTCTCTACTTGATTTTA
1 TTTGGATTTGTTTTTCTCTCTACCTGATTTTA
44624871 TTT
1 TTT
44624874 TATTAATTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.12, C:0.13, G:0.12, T:0.63
Consensus pattern (32 bp):
TTTGGATTTGTTTTTCTCTCTACCTGATTTTA
Found at i:44626148 original size:465 final size:464
Alignment explanation
Indices: 44625274--44626666 Score: 2248
Period size: 464 Copynumber: 3.0 Consensus size: 464
44625264 TTCATTAAAG
*
44625274 TTGCAACATGACAAACCAAGAAACAACATCCCTCAAAGGCATTGCCTTAAGAAAAGCACTGTAAA
1 TTGCAACATGACAGACCAAGAAACAACATCCCTCAAAGGCATTGCCTTAAGAAAAGCACTGTAAA
* * *
44625339 GAACCAATTAATTCCAGGTAACAATGTTTCGCTCAGGAATTTCATCGAACAATTTACACGCATCA
66 TAACCAATTAATTCCAGGTAACAATGTTTCACTCAGGAATTTCATCGAACAATTTACATGCATCA
* *
44625404 TCAAAATAATAGACAACACATTGTAAAAAGTTTTGACGAACACATAAAAAGCAGAAAAATGGAAG
131 TCAAAATAATAGACAACACATTGTTAAAAGTTTTGACGAACACATAAAAAGTAGAAAAATGGAAG
44625469 GAAAAAACAAAATTTGATTCATTGATTTCATTCTCTTGCCATTCATACAGAAAAAAGAAGAAGCT
196 GAAAAAACAAAATTTGATTCATTGATTTCATTCTCTTGCCATTCATACAGAAAAAAGAAGAAGCT
* * *
44625534 GTAGTTAACAATTACTTCCTGTAAATTCAACAACATGTTCATTGATCTTTTAGCGTTCTTTTTTT
261 GTAGTTAACAACTACTTCCTGTAAATTCAGCAACATGTTCATTGATCTTTTAGTGTTCTTTTTTT
* *
44625599 GTCGACCTCCATCTTTTAGCTTAAAATAAGCTATGTTAAAACTAAACCAAATTGCAGCAAACAGC
326 GTCGACCTCCATCTTTTAGCTTAAAATAAGCTATGTTAAAACTAAACCAAATTGCAGCAAATAGG
44625664 AAAACCAAAACTGCTATGTTAAAACTAAAATCTATCTAACTAATGTATATATGTCAAGAATATCA
391 AAAACCAAAACTGCTATGTTAAAACTAAAATCTATCTAACTAATGTATATATGTCAAGAATATCA
44625729 CTAGTCCTT
456 CTAGTCCTT
* * *
44625738 TTGTAACATGACAGACCAAGAAACAACATCCCTCAAAGGCATTGCCTTAAGAAAAGCATTGTGAA
1 TTGCAACATGACAGACCAAGAAACAACATCCCTCAAAGGCATTGCCTTAAGAAAAGCACTGTAAA
*
44625803 TAACCAAGTAATTCCAGGTAACAATGTTTCACTCAGGAATTTCATCGAACAATTTACATGCATCA
66 TAACCAATTAATTCCAGGTAACAATGTTTCACTCAGGAATTTCATCGAACAATTTACATGCATCA
*
44625868 TCAAAATAATAGATAACACATTGTTAAAAGTTTTGACGAACACATAAAAAGTAGAAAAATGGAAG
131 TCAAAATAATAGACAACACATTGTTAAAAGTTTTGACGAACACATAAAAAGTAGAAAAATGGAAG
44625933 GAAAAAAACAAAATTTGATTCATTGATTTCATTCTCTTGCCATTCATACAGAAAAAAGAAGAAGC
196 G-AAAAAACAAAATTTGATTCATTGATTTCATTCTCTTGCCATTCATACAGAAAAAAGAAGAAGC
44625998 TGTAGTTAACAACTACTTCCTGTAAATTCAGCAACATGTTCATTGATCTTTTAGTGTTCTTTTTT
260 TGTAGTTAACAACTACTTCCTGTAAATTCAGCAACATGTTCATTGATCTTTTAGTGTTCTTTTTT
*
44626063 TGTCAACCTCCATCTTTTAGCTTAAAATAAGCTATGTTAAAACTAAACCAAATTGCAGCAAATAG
325 TGTCGACCTCCATCTTTTAGCTTAAAATAAGCTATGTTAAAACTAAACCAAATTGCAGCAAATAG
44626128 GAAAACCAAAACTGCTATGTTAAAACTAAAATCTATGTTAAAACTAAAATCTATCTAACTAATGT
390 GAAAACCAAAA---C--TG-------------CTATGTTAAAACTAAAATCTATCTAACTAATGT
44626193 ATATATGTCAAGAATATCACTAGTCCTT
437 ATATATGTCAAGAATATCACTAGTCCTT
* *
44626221 TTGCAACAT----GA-C-AGAAACAA-ATCCCTTAAAGGCATTGCCTTAAGAAAAGCACTGTCAA
1 TTGCAACATGACAGACCAAGAAACAACATCCCTCAAAGGCATTGCCTTAAGAAAAGCACTGTAAA
*
44626279 TAACCAATTAATTCCAGGTAACAATGTTTCACTTAGGAATTTCATCGAACAATTTACATGCATCA
66 TAACCAATTAATTCCAGGTAACAATGTTTCACTCAGGAATTTCATCGAACAATTTACATGCATCA
** *
44626344 TCAAAATAATAGACAATGCATTGTTAAAAGTTTTGATGAACACATAAAAAGTAGAAAAATGGAAG
131 TCAAAATAATAGACAACACATTGTTAAAAGTTTTGACGAACACATAAAAAGTAGAAAAATGGAAG
44626409 GAAAAAACAAAATTTGATTCATTGATTTCATTCTCTTGCCATTCATACAGAAAAAAGAAGAAGCT
196 GAAAAAACAAAATTTGATTCATTGATTTCATTCTCTTGCCATTCATACAGAAAAAAGAAGAAGCT
*
44626474 GTAGTTAACAACTACTTCCTGTAAATTCAGCAACATG-T--TT-A-----T--TGATCTTTTTTT
261 GTAGTTAACAACTACTTCCTGTAAATTCAGCAACATGTTCATTGATCTTTTAGTGTTCTTTTTTT
44626528 GTCGACCTCCATCTTTTAGCTTAAAATAAGCTATGTTAAAACTAAACCAAATTGCAGCAAAT-GG
326 GTCGACCTCCATCTTTTAGCTTAAAATAAGCTATGTTAAAACTAAACCAAATTGCAGCAAATAGG
*
44626592 CAAAACCAAAACTACTATGTTAAAACTAAAATCTATCTAACTAATGTATATATGTCAAGAATATC
391 -AAAACCAAAACTGCTATGTTAAAACTAAAATCTATCTAACTAATGTATATATGTCAAGAATATC
44626657 ACTAGTCCTT
455 ACTAGTCCTT
44626667 CATTTAGATG
Statistics
Matches: 879, Mismatches: 30, Indels: 58
0.91 0.03 0.06
Matches are distributed among these distances:
446 61 0.07
459 1 0.00
461 1 0.00
463 2 0.00
464 267 0.30
465 198 0.23
466 1 0.00
468 1 0.00
470 2 0.00
471 1 0.00
472 2 0.00
474 1 0.00
475 101 0.11
476 160 0.18
477 8 0.01
478 1 0.00
479 2 0.00
483 69 0.08
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (464 bp):
TTGCAACATGACAGACCAAGAAACAACATCCCTCAAAGGCATTGCCTTAAGAAAAGCACTGTAAA
TAACCAATTAATTCCAGGTAACAATGTTTCACTCAGGAATTTCATCGAACAATTTACATGCATCA
TCAAAATAATAGACAACACATTGTTAAAAGTTTTGACGAACACATAAAAAGTAGAAAAATGGAAG
GAAAAAACAAAATTTGATTCATTGATTTCATTCTCTTGCCATTCATACAGAAAAAAGAAGAAGCT
GTAGTTAACAACTACTTCCTGTAAATTCAGCAACATGTTCATTGATCTTTTAGTGTTCTTTTTTT
GTCGACCTCCATCTTTTAGCTTAAAATAAGCTATGTTAAAACTAAACCAAATTGCAGCAAATAGG
AAAACCAAAACTGCTATGTTAAAACTAAAATCTATCTAACTAATGTATATATGTCAAGAATATCA
CTAGTCCTT
Found at i:44626165 original size:18 final size:18
Alignment explanation
Indices: 44626142--44626181 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
44626132 ACCAAAACTG
44626142 CTATGTTAAAACTAAAAT
1 CTATGTTAAAACTAAAAT
44626160 CTATGTTAAAACTAAAAT
1 CTATGTTAAAACTAAAAT
44626178 CTAT
1 CTAT
44626182 CTAACTAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.35
Consensus pattern (18 bp):
CTATGTTAAAACTAAAAT
Found at i:44628817 original size:3 final size:3
Alignment explanation
Indices: 44628798--44628983 Score: 134
Period size: 3 Copynumber: 63.0 Consensus size: 3
44628788 TTAATTAGTT
* * * * *
44628798 TAA TAA T-A TGA TGA TAA TAA TAG TAA TAA T-A CAA TAA TAA TAA -AG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
44628843 TAGA AAA TAA TAA TAA TAA TAA TAA TAA T-A CAA TAA TAA TAA -AA
1 TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
44628887 CAAA GAA TAA TAA -CA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * **
44628932 TGA CAA TAG TAA TAA TAA TGA TAA TGA TAA -AA TTAA TTAA TTT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA -TAA TAA TAA
44628978 TAA TAA
1 TAA TAA
44628984 AGTAGCAAAA
Statistics
Matches: 144, Mismatches: 29, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
2 10 0.07
3 125 0.87
4 9 0.06
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:44628863 original size:44 final size:46
Alignment explanation
Indices: 44628811--44628949 Score: 167
Period size: 44 Copynumber: 3.0 Consensus size: 46
44628801 TAATATGATG
* **
44628811 ATAATAATAGTAATAATACAATAATAATAAAGTAGAA-AATAAT-A-
1 ATAATAATAATAATAATACAATAATAATAAAACA-AAGAATAATAAC
44628855 ATAATAATAATAATAATACAATAATAATAAAACAAAGAATAATAAC
1 ATAATAATAATAATAATACAATAATAATAAAACAAAGAATAATAAC
* *
44628901 ATAATAATAATAATAATAATAATAATAATAATGACAATAGTAATAATAA
1 ATAATAATAATAATAAT-ACAATAATAATAA-AACAA-AG-AATAATAA
44628950 TGATAATGAT
Statistics
Matches: 83, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
43 2 0.02
44 37 0.45
45 1 0.01
46 17 0.20
47 12 0.14
48 4 0.05
49 2 0.02
50 8 0.10
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (46 bp):
ATAATAATAATAATAATACAATAATAATAAAACAAAGAATAATAAC
Found at i:44630598 original size:20 final size:20
Alignment explanation
Indices: 44630573--44630616 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
44630563 TCTAATCATA
* *
44630573 TAATAAATTATTTATTGTTT
1 TAATAAATTATTTAATATTT
44630593 TAATAAATTATTTAATATTT
1 TAATAAATTATTTAATATTT
44630613 TAAT
1 TAAT
44630617 TTTATTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TAATAAATTATTTAATATTT
Found at i:44630698 original size:15 final size:15
Alignment explanation
Indices: 44630678--44630734 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
44630668 ATTCAATTTT
44630678 AATATTTTAATAATA
1 AATATTTTAATAATA
*
44630693 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
44630712 AATATATTAATAATA
1 AATATTTTAATAATA
44630727 AATATTTT
1 AATATTTT
44630735 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:44631589 original size:18 final size:19
Alignment explanation
Indices: 44631563--44631600 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
44631553 TACAGAAAGT
*
44631563 TCAAATATA-AAATATTCA
1 TCAAATATATAAATACTCA
*
44631581 TCAATTATATAAATACTCA
1 TCAAATATATAAATACTCA
44631600 T
1 T
44631601 TAATACTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (19 bp):
TCAAATATATAAATACTCA
Found at i:44634981 original size:16 final size:16
Alignment explanation
Indices: 44634962--44634992 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
44634952 ATAAATAACA
44634962 ATATAAATTTTATAAT
1 ATATAAATTTTATAAT
44634978 ATATAAATTTTATAA
1 ATATAAATTTTATAA
44634993 AAAAAAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATAAATTTTATAAT
Found at i:44635627 original size:26 final size:26
Alignment explanation
Indices: 44635555--44635636 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 26
44635545 TGATACAAAT
*
44635555 TGATAAT-AGATTAGGTAAAT-ATTCTA
1 TGATAATGAG-TTAGGTAAATGTTTC-A
* *
44635581 TAATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGAGTTAGGTAAATGTTTCA
*
44635607 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTTCA
44635633 TGAT
1 TGAT
44635637 GGGAATTTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 44 0.92
27 4 0.08
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.38
Consensus pattern (26 bp):
TGATAATGAGTTAGGTAAATGTTTCA
Found at i:44645310 original size:61 final size:60
Alignment explanation
Indices: 44645208--44645384 Score: 150
Period size: 60 Copynumber: 2.9 Consensus size: 60
44645198 TCAAGCTTTA
* * *
44645208 CTGGGCC-TAAGCCCTATTCAGAAATCAGAGT-TAACTAGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCAT-AGCCCTATT-A-CAATCAGAGTAT-ACTGGGCCTTAGCCCATATCAATATCAAT
* * *
44645270 CTGGGCCATAGCCC-CTTACAGTATCAGAGTATACTGGGCC-TAGCCCATGTCAGTATCAAT
1 CTGGGCCATAGCCCTATTACA--ATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAAT
* * * *
44645330 CTGGGTCGTAGCCCTATTACAAGTC-GAGATATATTGGGCCTT-GCCCATATTAATA
1 CTGGGCCATAGCCCTATTACAA-TCAGAG-TATACTGGGCCTTAGCCCATATCAATA
44645385 CAGTTGGGCC
Statistics
Matches: 94, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
59 5 0.05
60 52 0.55
61 23 0.24
62 13 0.14
63 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (60 bp):
CTGGGCCATAGCCCTATTACAATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAAT
Found at i:44645397 original size:20 final size:20
Alignment explanation
Indices: 44645372--44645411 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
44645362 ATTGGGCCTT
44645372 GCCCATATT-AATACAGTTGG
1 GCCCAT-TTCAATACAGTTGG
*
44645392 GCCCATTTCAATATAGTTGG
1 GCCCATTTCAATACAGTTGG
44645412 CCTATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (20 bp):
GCCCATTTCAATACAGTTGG
Found at i:44649425 original size:20 final size:20
Alignment explanation
Indices: 44649400--44649445 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
44649390 ATTGGGCCTT
*
44649400 GCCCATATT-ATTACAGTTGG
1 GCCCATATTCAATACAGTT-G
44649420 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAATACAGTTG
44649439 GCCCATA
1 GCCCATA
44649446 ACAAAACAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (20 bp):
GCCCATATTCAATACAGTTG
Found at i:44649454 original size:19 final size:20
Alignment explanation
Indices: 44649412--44649454 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
44649402 CCATATTATT
** *
44649412 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
44649432 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
44649451 ACAG
1 ACAG
44649455 CCTCATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:44656085 original size:39 final size:38
Alignment explanation
Indices: 44656032--44656105 Score: 130
Period size: 39 Copynumber: 1.9 Consensus size: 38
44656022 CAAACTTGAC
*
44656032 ATCCTTTGCAATAGCCTTGTCATTGGTGTAGCTATGAT
1 ATCCTTTGCAATAGCCTTGTCATTAGTGTAGCTATGAT
44656070 ATCCTTGTGCAATAGCCTTGTCATTAGTGTAGCTAT
1 ATCCTT-TGCAATAGCCTTGTCATTAGTGTAGCTAT
44656106 CATAGAGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
38 6 0.18
39 28 0.82
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (38 bp):
ATCCTTTGCAATAGCCTTGTCATTAGTGTAGCTATGAT
Found at i:44660028 original size:47 final size:48
Alignment explanation
Indices: 44659959--44660221 Score: 233
Period size: 46 Copynumber: 5.6 Consensus size: 48
44659949 GTAAGGTGTT
* * *
44659959 GATGCCATATCTCAGACATGGTCTTACACTGGCTCACATCTC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGCC
* * *
44660006 GATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCGAAGCC
* * *
44660054 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACGTCTCGAAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGCC
* * * * *
44660100 GATG-CATGTCCCCGATAT-GTCTTACACTAGCTCTCGTCTC-AATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAA-GCC
* * * * *
44660146 AATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT--ATGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCGA-AGCC
*
44660194 GATG-CATGTCCCAGCCAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
44660222 AGCCAACAAC
Statistics
Matches: 180, Mismatches: 28, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
45 2 0.01
46 74 0.41
47 72 0.40
48 31 0.17
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGCC
Found at i:44660155 original size:93 final size:95
Alignment explanation
Indices: 44659960--44660221 Score: 263
Period size: 94 Copynumber: 2.8 Consensus size: 95
44659950 TAAGGTGTTG
* * * * *
44659960 ATGCCATATCTCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCTAGACAT
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCAGACAT
* *
44660025 GGTCTTACACTGACTATCATCTCGTAGCCG
66 GGTCTTACACTGACTATCATCTCATAGCCA
* * * *
44660055 ATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACGTCTCGAAGCCGATG-CATGTCCCCGATA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATCTC-AAGCCGATGCCATGTCCCAGACA
* *
44660117 T-GTCTTACACT-AGCTCTCGTCTCA-ATGCCA
65 TGGTCTTACACTGA-CTATCATCTCATA-GCCA
* * * *
44660147 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-ATGGCCGATG-CATGTCCCAGCC
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT-CTCA-AGCCGATGCCATGTCCCAGAC
44660210 AT-GTCTTACACT
64 ATGGTCTTACACT
44660222 AGCCAACAAC
Statistics
Matches: 139, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
91 2 0.01
92 24 0.17
93 46 0.33
94 63 0.45
95 4 0.03
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.28
Consensus pattern (95 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGACTATCATCTCATAGCCA
Found at i:44663254 original size:47 final size:48
Alignment explanation
Indices: 44663185--44663363 Score: 168
Period size: 49 Copynumber: 3.7 Consensus size: 48
44663175 TAGGTATGAT
*
44663185 GTCGATGCCATGTCCCAGACATGGTCTTAGACTGGCTCATCCAACA-A-
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAA-ATAG
* *
44663232 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATTGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAAA-T-AG
* * * * *
44663281 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCACATATCTG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CAAAT-AG
* * * *
44663330 TGCCGATGTCATATCCCAGACGTGGTCTTACACT
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACT
44663364 AACACTTCTA
Statistics
Matches: 110, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 5 0.05
47 35 0.32
48 1 0.01
49 37 0.34
50 31 0.28
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAAATAG
Found at i:44663306 original size:49 final size:47
Alignment explanation
Indices: 44663187--44663414 Score: 167
Period size: 49 Copynumber: 4.7 Consensus size: 47
44663177 GGTATGATGT
* * *
44663187 CGATGCCATGTCCCAGACATGGTCTTAGACTGGCTCATCCAACAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCAACAAGC
*
44663234 CGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAA-ATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCAACA---A-GC
* **
44663283 CGATGCCATGTCCCAAACATGGTCTTACACT-AGCTC-TCACATATCTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATC-CA-A-C-AAGC
* * * * * * * ** *
44663333 CGATGTCATATCCCAGACGTGGTCTTACACTAACACTTCTATACGTGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCA-ACAAGC
* *
44663381 CAATGCCATGTCCCAGACATGGCCTTACACTGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC
44663415 ACAACTCGTA
Statistics
Matches: 147, Mismatches: 21, Indels: 25
0.76 0.11 0.13
Matches are distributed among these distances:
45 1 0.01
46 5 0.03
47 33 0.22
48 33 0.22
49 36 0.24
50 35 0.24
51 4 0.03
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCAACAAGC
Found at i:44663408 original size:48 final size:50
Alignment explanation
Indices: 44663236--44663416 Score: 151
Period size: 48 Copynumber: 3.7 Consensus size: 50
44663226 CAACAAGTCG
* * *
44663236 ATGCCATGTCCCAGACATGGTCTTACACTGACTA-TCGA-A-AT-TGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAAC-ACTC-ACATATCTG-TGCCA
* * * *
44663285 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCTGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACACTCACATATCTGTGCCA
* * * * *
44663335 ATGTCATATCCCAGACGTGGTCTTACACTAACACT-TC-TATAC-GTGGCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAACACTCACATAT-CTGTGCCA
* *
44663383 ATGCCATGTCCCAGACATGGCCTTACACTGACAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAACAC
44663417 AACTCGTAGC
Statistics
Matches: 108, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
48 37 0.34
49 34 0.31
50 35 0.32
51 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACACTCACATATCTGTGCCA
Found at i:44663924 original size:30 final size:30
Alignment explanation
Indices: 44663888--44663961 Score: 148
Period size: 30 Copynumber: 2.5 Consensus size: 30
44663878 ATAATTGGGA
44663888 AAAATGACCATTTTGCCCCTAGACTTCTAC
1 AAAATGACCATTTTGCCCCTAGACTTCTAC
44663918 AAAATGACCATTTTGCCCCTAGACTTCTAC
1 AAAATGACCATTTTGCCCCTAGACTTCTAC
44663948 AAAATGACCATTTT
1 AAAATGACCATTTT
44663962 ACCTTTGGAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.31
Consensus pattern (30 bp):
AAAATGACCATTTTGCCCCTAGACTTCTAC
Found at i:44666353 original size:11 final size:11
Alignment explanation
Indices: 44666337--44666361 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
44666327 ATATCTAGAA
44666337 TTCTCTTCATT
1 TTCTCTTCATT
44666348 TTCTCTTCATT
1 TTCTCTTCATT
44666359 TTC
1 TTC
44666362 ATCAGCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:44667642 original size:25 final size:25
Alignment explanation
Indices: 44667613--44667664 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
44667603 AAGAATAATT
**
44667613 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
44667638 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
44667663 TG
1 TG
44667665 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:44670313 original size:2 final size:2
Alignment explanation
Indices: 44670308--44670335 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
44670298 TATATGTGTG
44670308 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
44670336 AGAATCCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:44671085 original size:22 final size:23
Alignment explanation
Indices: 44671052--44671095 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
44671042 TTCAATTTAT
44671052 TTTATTTTATATATAAATATTTG
1 TTTATTTTATATATAAATATTTG
* *
44671075 TTTA-TTTATATTTATATATTT
1 TTTATTTTATATATAAATATTT
44671096 ATTCGTTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTATTTTATATATAAATATTTG
Found at i:44671846 original size:17 final size:18
Alignment explanation
Indices: 44671824--44671859 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44671814 CTAAAACTTT
44671824 ATTTTAA-TATATTATAC
1 ATTTTAATTATATTATAC
*
44671841 ATTTTAATTTTATTATAC
1 ATTTTAATTATATTATAC
44671859 A
1 A
44671860 CATTTTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTAATTATATTATAC
Found at i:44680395 original size:13 final size:13
Alignment explanation
Indices: 44680377--44680410 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
44680367 TTTTTTTCAC
44680377 GTTCTTCTTTTTT
1 GTTCTTCTTTTTT
44680390 GTTCTTC-TTTTT
1 GTTCTTCTTTTTT
*
44680402 CTTCTTCTT
1 GTTCTTCTT
44680411 CGATTTTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.00, C:0.21, G:0.06, T:0.74
Consensus pattern (13 bp):
GTTCTTCTTTTTT
Found at i:44681043 original size:21 final size:21
Alignment explanation
Indices: 44681019--44681071 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
44681009 GTATGCCCCA
* *
44681019 TCCACATGGGCTTGTGGGGCC
1 TCCACATGGGCATGTGAGGCC
*
44681040 TCCACACGGGCATGTGAGGCC
1 TCCACATGGGCATGTGAGGCC
*
44681061 TCCGCATGGGC
1 TCCACATGGGC
44681072 GTGTAGACCC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.13, C:0.32, G:0.36, T:0.19
Consensus pattern (21 bp):
TCCACATGGGCATGTGAGGCC
Found at i:44683979 original size:12 final size:12
Alignment explanation
Indices: 44683956--44683994 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
44683946 TTCTATTTGG
44683956 CTTTTTTCTGTT
1 CTTTTTTCTGTT
44683968 -TTTTTTCATGTT
1 CTTTTTTC-TGTT
*
44683980 CTTTTTTTTGTT
1 CTTTTTTCTGTT
44683992 CTT
1 CTT
44683995 CTTCTTATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 7 0.29
12 11 0.46
13 6 0.25
ACGTcount: A:0.03, C:0.13, G:0.08, T:0.77
Consensus pattern (12 bp):
CTTTTTTCTGTT
Found at i:44684646 original size:21 final size:21
Alignment explanation
Indices: 44684590--44684676 Score: 68
Period size: 21 Copynumber: 4.2 Consensus size: 21
44684580 GGTTGTTCAT
** *
44684590 ACGGGCGTGTGACCCCTCTAC
1 ACGGGCGTGTGAGGCCTCCAC
** * * *
44684611 ACTAGCGCGTAAGGCCTTCAC
1 ACGGGCGTGTGAGGCCTCCAC
44684632 ACGGGCGTGTGAGGCCTCCAC
1 ACGGGCGTGTGAGGCCTCCAC
* * *
44684653 ATGGGCGTGT-AGACCCCCAC
1 ACGGGCGTGTGAGGCCTCCAC
44684673 ACGG
1 ACGG
44684677 CCGGGGCATA
Statistics
Matches: 49, Mismatches: 17, Indels: 1
0.73 0.25 0.01
Matches are distributed among these distances:
20 11 0.22
21 38 0.78
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.16
Consensus pattern (21 bp):
ACGGGCGTGTGAGGCCTCCAC
Found at i:44690989 original size:3 final size:3
Alignment explanation
Indices: 44690981--44691010 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
44690971 TCCAAAATCG
44690981 AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
44691011 GCCTAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:44703376 original size:47 final size:45
Alignment explanation
Indices: 44703271--44703628 Score: 312
Period size: 47 Copynumber: 7.7 Consensus size: 45
44703261 TATACGTGCT
* **
44703271 GATGCATGTCCTAGACATGTCTTACACTCACA-CAACTCTC-A-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCATC-A-TCTCGAGGCC
* *
44703315 GATGCATGTCCCAGACATGTCTTACACTGGCTATCCTCGTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCATC-TCGAGGCC
* * *
44703362 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTCGAGGCC
* * * *
44703408 GATGCCATGTCCCAGACATGGTCTTACACTGGAACTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCA-TCAT-CTCGAGGCC
* *
44703456 GATGCATGTCCCAGACATGTCTAACACTGGCTATCATCATCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCATC-TCGAGGCC
* * * * *
44703503 GATGCATATCCCATACATGTCTTACACTGGCACTTATCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTCGAGGCC
* * * * *
44703549 GATGCCATGTCCTAGATATGGTCTTACACTGGCACACATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCA-TCAT-CTCGAGGCC
*
44703597 GATGCATGTCCCAAACATGTCTTACACTGGCA
1 GATGCATGTCCCAGACATGTCTTACACTGGCA
44703629 CATAAGTAAT
Statistics
Matches: 257, Mismatches: 41, Indels: 30
0.78 0.12 0.09
Matches are distributed among these distances:
44 30 0.12
45 3 0.01
46 52 0.20
47 123 0.48
48 47 0.18
49 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCGAGGCC
Found at i:44703475 original size:141 final size:141
Alignment explanation
Indices: 44703218--44703627 Score: 499
Period size: 141 Copynumber: 2.9 Consensus size: 141
44703208 GGGATAAGTT
* * ** * * *
44703218 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTATATACGTGCTGATG-CATGTCC
1 GCTGATG-CATATCCCAGACAT-GTCTTACACTAGCACTCATCTCTAC--GCCGATGCCATGTCC
* * * * *
44703282 TAGACAT-GTCTTACACT--CACACA-ACTCTCAGCCGATGCATGTCCCAGACATGTCTTACACT
62 CAGACATGGTCTTACACTGGAACACATAATGT-GGCCGATGCATGTCCCAGACATGTCTTACACT
* *
44703343 GGCTATCCTCGTCGAG
126 GGCTATCATCATCGAG
*
44703359 G-TCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAG
1 GCT-GATGCATATCCCAGACATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAG
* * *
44703423 ACATGGTCTTACACTGGAACTCATAATGTGGCTGATGCATGTCCCAGACATGTCTAACACTGGCT
65 ACATGGTCTTACACTGGAACACATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
44703488 ATCATCATCGAG
130 ATCATCATCGAG
* * * *
44703500 GCTGATGCATATCCCATACATGTCTTACACTGGCACTTATCTCTACGCCGATGCCATGTCCTAGA
1 GCTGATGCATATCCCAGACATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAGA
* * *
44703565 TATGGTCTTACACTGGCACACATAATGTGGCCGATGCATGTCCCAAACATGTCTTACACTGGC
66 CATGGTCTTACACTGGAACACATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTGGC
44703628 ACATAAGTAA
Statistics
Matches: 235, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
137 6 0.03
138 13 0.06
139 30 0.13
140 15 0.06
141 167 0.71
142 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
GCTGATGCATATCCCAGACATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGGAACACATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTA
TCATCATCGAG
Found at i:44703628 original size:94 final size:93
Alignment explanation
Indices: 44703221--44703629 Score: 332
Period size: 94 Copynumber: 4.4 Consensus size: 93
44703211 ATAAGTTGCT
* * ** * * *
44703221 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTATATACGTGCTGATGCATGTCCTAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATATCTAC--GCCGATGCATGTCCCAGA
*
44703286 CATGTCTTACACT--CACACA-ACTCTCA-GCC
62 CATGTCTTACACTGGCACACATAATCT-AGGCC
* * * * *
44703315 GATGCATGTCCCAGACATGTCTTACACTGGCTA-TCCTCGTCGAGGTCGATGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCAT-ATCTACGCCGATGCATGTCCCAGACA
* * * *
44703379 TGTCTTACACTAGCACTCAT-CTCTACGCC
64 TGTCTTACACTGGCACACATAATCTAGGCC
* * * *
44703408 GATGCCATGTCCCAGACATGGTCTTACACTGGAACTCATAATGT-GGCTGATGCATGTCCCAGAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-ATCTACGCCGATGCATGTCCCAGAC
* * * * *
44703472 ATGTCTAACACTGGCTA-TCATCATCGAGGCT
63 ATGTCTTACACTGGC-ACACATAATCTAGGCC
* * * * * *
44703503 GATGCATATCCCATACATGTCTTACACTGGCACTTATCTCTACGCCGATGCCATGTCCTAGATAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATATCTACGCCGATG-CATGTCCCAGACAT
*
44703568 GGTCTTACACTGGCACACATAATGT-GGCC
65 -GTCTTACACTGGCACACATAATCTAGGCC
*
44703597 GATGCATGTCCCAAACATGTCTTACACTGGCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC
44703630 ATAAGTAATC
Statistics
Matches: 256, Mismatches: 44, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
91 28 0.11
92 17 0.07
93 55 0.21
94 113 0.44
95 43 0.17
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATATCTACGCCGATGCATGTCCCAGACATG
TCTTACACTGGCACACATAATCTAGGCC
Found at i:44704509 original size:41 final size:41
Alignment explanation
Indices: 44704451--44704533 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
44704441 CCGGTGGAGA
*
44704451 GAAAGGATGGAGGAGAAGAAAAATAATAGCTAGGCTTTTAG
1 GAAAGGATGGAGAAGAAGAAAAATAATAGCTAGGCTTTTAG
44704492 GAAAGGATGGAGAAGAAGAAAAATAATAGCTAGGCTTTTAG
1 GAAAGGATGGAGAAGAAGAAAAATAATAGCTAGGCTTTTAG
44704533 G
1 G
44704534 TATTATTTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.45, C:0.05, G:0.31, T:0.19
Consensus pattern (41 bp):
GAAAGGATGGAGAAGAAGAAAAATAATAGCTAGGCTTTTAG
Found at i:44710576 original size:63 final size:63
Alignment explanation
Indices: 44710477--44710604 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
44710467 CGGTATTGCT
44710477 AAGACCAAGAGTACAAAATTATTAGTGAACTTAGAATAGATTTTCTGATAAATAAGTTTCAGC
1 AAGACCAAGAGTACAAAATTATTAGTGAACTTAGAATAGATTTTCTGATAAATAAGTTTCAGC
44710540 AAGACCAAGAGTACAAAATTATTAGTGAACTTAGAATAGATTTTCTGATAAATAAGTTTCAGC
1 AAGACCAAGAGTACAAAATTATTAGTGAACTTAGAATAGATTTTCTGATAAATAAGTTTCAGC
44710603 AA
1 AA
44710605 TATATCAAAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.30
Consensus pattern (63 bp):
AAGACCAAGAGTACAAAATTATTAGTGAACTTAGAATAGATTTTCTGATAAATAAGTTTCAGC
Found at i:44716317 original size:10 final size:11
Alignment explanation
Indices: 44716302--44716327 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
44716292 TTATCAGATG
44716302 TTTTTTTTTCT
1 TTTTTTTTTCT
44716313 TTTTTTTTTCT
1 TTTTTTTTTCT
44716324 TTTT
1 TTTT
44716328 GTTCACTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:44719423 original size:29 final size:29
Alignment explanation
Indices: 44719390--44719482 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
44719380 TGACGAGATT
* *
44719390 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
44719419 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
44719448 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
44719477 GGCACT
1 GGCACT
44719483 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:44719495 original size:29 final size:29
Alignment explanation
Indices: 44719390--44719495 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
44719380 TGACGAGATT
* *
44719390 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
44719419 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
44719448 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
44719477 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
44719496 CGAAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:44727217 original size:29 final size:29
Alignment explanation
Indices: 44727184--44727276 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
44727174 TGACGAGATT
* *
44727184 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
44727213 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
44727242 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
44727271 GGCACT
1 GGCACT
44727277 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:44727289 original size:29 final size:29
Alignment explanation
Indices: 44727184--44727289 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
44727174 TGACGAGATT
* *
44727184 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
44727213 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
44727242 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
44727271 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
44727290 CGAAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:44730369 original size:27 final size:27
Alignment explanation
Indices: 44730308--44730369 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
44730298 TAAGGCGATC
* *
44730308 CTTTCATAATTCGCCACAAATGCTTTT
1 CTTTCATGATTCGCCACAAAGGCTTTT
* *
44730335 CTTTCATGATTCGTCGCAAAGGCTTTT
1 CTTTCATGATTCGCCACAAAGGCTTTT
44730362 CTTTCATG
1 CTTTCATG
44730370 GAATGTTTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (27 bp):
CTTTCATGATTCGCCACAAAGGCTTTT
Found at i:44730818 original size:13 final size:14
Alignment explanation
Indices: 44730793--44730821 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
44730783 ATACCATACC
44730793 TTTCATGATTTCAG
1 TTTCATGATTTCAG
44730807 TTTCAT-ATTTCAG
1 TTTCATGATTTCAG
44730820 TT
1 TT
44730822 ACTATCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.21, C:0.14, G:0.10, T:0.55
Consensus pattern (14 bp):
TTTCATGATTTCAG
Found at i:44732869 original size:23 final size:23
Alignment explanation
Indices: 44732820--44732869 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
44732810 GAATAATCAG
* *
44732820 AGTTTAACTAAAAAAAACTACAG
1 AGTTTAACTAAAAAAAACAACAC
*
44732843 AGTTTAACTAGAAAAAAA-AACTC
1 AGTTTAACTA-AAAAAAACAACAC
44732866 AGTT
1 AGTT
44732870 CTATGGGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.54, C:0.12, G:0.10, T:0.24
Consensus pattern (23 bp):
AGTTTAACTAAAAAAAACAACAC
Found at i:44733327 original size:27 final size:24
Alignment explanation
Indices: 44733297--44733351 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 24
44733287 TAATATGCTA
*
44733297 TTTTCAAGTTTTTAATTAACAAACATG
1 TTTTCAAGTTGTTAA--AA-AAACATG
*
44733324 TTTTTAAGTTGTTAAAAAAACATG
1 TTTTCAAGTTGTTAAAAAAACATG
44733348 TTTT
1 TTTT
44733352 TAACATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 11 0.42
25 2 0.08
27 13 0.50
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.47
Consensus pattern (24 bp):
TTTTCAAGTTGTTAAAAAAACATG
Found at i:44741175 original size:46 final size:50
Alignment explanation
Indices: 44741114--44741246 Score: 141
Period size: 46 Copynumber: 2.7 Consensus size: 50
44741104 TGTCACACAT
* * * *
44741114 TACA-CACCGAAGCCATAGCCCTGCCATGGTCTTACACG-GATCACA-TA
1 TACATCACCGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACATTA
* * *
44741161 T-CAT-ACCGATGCCATATCCCAGATATGGTCTTATACGAAATCACATTA
1 TACATCACCGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACATTA
44741209 TCACATCACACCGATGCCATAGCCCAGCTATGGTCTTA
1 T-ACAT--CACCGATGCCATAGCCCAGCTATGGTCTTA
44741247 TATGGGAACA
Statistics
Matches: 69, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
46 29 0.42
47 7 0.10
48 3 0.04
50 3 0.04
53 27 0.39
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.24
Consensus pattern (50 bp):
TACATCACCGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACATTA
Found at i:44741316 original size:52 final size:51
Alignment explanation
Indices: 44741160--44741319 Score: 162
Period size: 52 Copynumber: 3.1 Consensus size: 51
44741150 CGGATCACAT
* * * *
44741160 ATCATACCGATGCCATATCCCAGATATGGTCTTATA-CGAAATCACATTATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATATAG-AA-CACA-TATCAC
*
44741213 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATATGGGAACACGA-ATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATAT-AGAACAC-ATATCAC
*** * *
44741265 ATTGTACTGATGCCATAGCCCGGCTATGGTCTTATATAGAAGCACATATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATATAGAA-CACATATCAC
44741317 ATC
1 ATC
44741320 TTTTCCGTCA
Statistics
Matches: 91, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
51 4 0.04
52 47 0.52
53 36 0.40
54 3 0.03
55 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (51 bp):
ATCACACCGATGCCATAGCCCAGCTATGGTCTTATATAGAACACATATCAC
Found at i:44744022 original size:30 final size:30
Alignment explanation
Indices: 44743988--44744048 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
44743978 TTCCTGAGCC
*
44743988 TAGGGGTAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
44744018 TAGGGGCAAAATTTTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
44744048 T
1 T
44744049 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:44744831 original size:67 final size:64
Alignment explanation
Indices: 44744712--44744861 Score: 160
Period size: 67 Copynumber: 2.3 Consensus size: 64
44744702 TGACAGATAG
* * * *
44744712 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACAAGACAT
1 TATGTAGCTAGGTCGCATGGATGATGCTAAGTGCACACCATGTGTACAAGAGAGCTAC--GACA-
44744777 TA
63 TA
* * * **
44744779 TGATGTAGCTAGGTCGCATGGGTGAT-CTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGGATGATGCTAAGTGCACACCATGT-GTACAAGAGAGCTACGACAT
44744842 A
64 A
44744843 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
44744862 TGTAGTACTA
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
63 18 0.25
64 3 0.04
65 2 0.03
67 28 0.39
68 21 0.29
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATGCTAAGTGCACACCATGTGTACAAGAGAGCTACGACATA
Found at i:44744981 original size:50 final size:50
Alignment explanation
Indices: 44744851--44745048 Score: 272
Period size: 50 Copynumber: 4.0 Consensus size: 50
44744841 TATATGTAGC
* * *
44744851 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T
* * * * *
44744902 TCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAAT
* *
44744952 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAAT
* *
44745002 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
44745049 GATTGGCTAC
Statistics
Matches: 130, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
49 42 0.32
50 47 0.36
51 41 0.32
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAAT
Found at i:44746142 original size:2 final size:2
Alignment explanation
Indices: 44746135--44746161 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
44746125 TCATGACATG
44746135 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
44746162 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:44747551 original size:46 final size:45
Alignment explanation
Indices: 44747501--44747672 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
44747491 TGGTTGAGCA
44747501 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
44747547 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
44747593 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
44747639 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44747673 GGGCGGGTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:44747655 original size:92 final size:92
Alignment explanation
Indices: 44747498--44747667 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
44747488 GGATGGTTGA
* *
44747498 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44747563 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
44747590 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44747655 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
44747668 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:44755121 original size:46 final size:45
Alignment explanation
Indices: 44755071--44755242 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
44755061 TGGTTGAGCA
44755071 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
44755117 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
44755163 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
44755209 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44755243 GGGCGGGTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:44755225 original size:92 final size:92
Alignment explanation
Indices: 44755068--44755237 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
44755058 GGATGGTTGA
* *
44755068 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44755133 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
44755160 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44755225 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
44755238 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:44757673 original size:22 final size:22
Alignment explanation
Indices: 44757648--44757702 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
44757638 CATTTGTAAA
* *
44757648 ATATGTATTAGATATTA-AATAG
1 ATATTTATTA-ATATTATAAAAG
44757670 ATATTTATT-ATATTATAAAAG
1 ATATTTATTAATATTATAAAAG
44757691 ATATTTATTAAT
1 ATATTTATTAAT
44757703 TAAATAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 6 0.21
21 13 0.45
22 10 0.34
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (22 bp):
ATATTTATTAATATTATAAAAG
Found at i:44757694 original size:21 final size:20
Alignment explanation
Indices: 44757659--44757706 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
44757649 TATGTATTAG
*
44757659 ATATTAAATAGATATTTATT
1 ATATTAAAAAGATATTTATT
44757679 ATATTATAAAAGATATTTATT
1 ATATTA-AAAAGATATTTATT
44757700 A-ATTAAA
1 ATATTAAA
44757707 TAATTATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 10 0.38
21 14 0.54
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
ATATTAAAAAGATATTTATT
Found at i:44757808 original size:19 final size:19
Alignment explanation
Indices: 44757765--44757812 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
44757755 ATGTATGGTT
44757765 ATAAATAAATACAAATGTA
1 ATAAATAAATACAAATGTA
* *
44757784 CT-AATAATATACACATG-A
1 ATAAATAA-ATACAAATGTA
44757802 ATAAATAAATA
1 ATAAATAAATA
44757813 ATACTTATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.60, C:0.08, G:0.04, T:0.27
Consensus pattern (19 bp):
ATAAATAAATACAAATGTA
Found at i:44757850 original size:2 final size:2
Alignment explanation
Indices: 44757838--44757881 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
44757828 GTATAAATAC
*
44757838 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44757880 AT
1 AT
44757882 GAAAAAGAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44758001 original size:21 final size:21
Alignment explanation
Indices: 44757955--44757995 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
44757945 GCAGGGGAAG
44757955 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
*
44757976 GAAAG-AAGAAAAGGAGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
44757996 TTAAAGGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (21 bp):
GAAAGAAAGAAAAAGAGAAAA
Found at i:44759904 original size:46 final size:46
Alignment explanation
Indices: 44759852--44760113 Score: 350
Period size: 46 Copynumber: 5.7 Consensus size: 46
44759842 GTGTGCTCTT
* *
44759852 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
44759898 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * **
44759944 TGATATGAAATGTGTAGGGTCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
44759990 TGATA-GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
44760035 TGACATGGAAATGAATAAGA-AATGGTTGAAAGATACCATGGCAACA
1 TGATAT-GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
44760081 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGA
44760114 CACTATAGCA
Statistics
Matches: 194, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
44 1 0.01
45 49 0.25
46 131 0.68
47 13 0.07
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:44760060 original size:91 final size:91
Alignment explanation
Indices: 44759873--44760113 Score: 333
Period size: 91 Copynumber: 2.6 Consensus size: 91
44759863 GTGTAAGACC
* *
44759873 ATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATG
1 ATGGTTGAAAGATACCATGGCAACATGATA-GAAATGAGTAAGACCATGGTTGAAAGATACCATG
* ** * **
44759938 GCAAGATGATATGAAATGTGTAGGGTC
65 GCAAGATGACATGAAATGAATAGAGAA
*
44759965 ATGGTTGAAAGATACCATGGCAACATGATAGAAATGAATAAGACCATGGTTGAAAGATACCATGG
1 ATGGTTGAAAGATACCATGGCAACATGATAGAAATGAGTAAGACCATGGTTGAAAGATACCATGG
44760030 CAACG-TGACATGGAAATGAATA-AGAA
66 CAA-GATGACAT-GAAATGAATAGAGAA
* *
44760056 ATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
1 ATGGTTGAAAGATACCATGGCAACATGATAG-AAATGAGTAAGACCATGGTTGAAAGA
44760114 CACTATAGCA
Statistics
Matches: 134, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
91 72 0.54
92 62 0.46
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (91 bp):
ATGGTTGAAAGATACCATGGCAACATGATAGAAATGAGTAAGACCATGGTTGAAAGATACCATGG
CAAGATGACATGAAATGAATAGAGAA
Found at i:44760109 original size:137 final size:138
Alignment explanation
Indices: 44759852--44760113 Score: 359
Period size: 137 Copynumber: 1.9 Consensus size: 138
44759842 GTGTGCTCTT
** * **
44759852 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGA
* * * * * ** *
44759917 CCATGGTTGAAAGATACCATGGCAAGATGATATGAAATGTGTAGGGTCATGGTTGAAAGATACCA
66 CAATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGATACCA
44759982 TGGCAACA
131 TGGCAACA
*
44759990 TGATA-GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGGAAATGAATAAG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACAT-GAAATGAATAAG
44760054 A-AATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
65 ACAATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGA
44760114 CACTATAGCA
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
136 1 0.01
137 91 0.84
138 16 0.15
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (138 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGA
CAATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGATACCA
TGGCAACA
Found at i:44760142 original size:137 final size:137
Alignment explanation
Indices: 44759866--44760144 Score: 341
Period size: 137 Copynumber: 2.0 Consensus size: 137
44759856 ATGAAATGTG
* ** *
44759866 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACAATGGTTGAAAGA
* * * * ** * * *
44759931 TACCATGGCAAGATGATATGAAATGTGTAGGGTCATGGTTGAAAGATACCATGGCAACATGATAG
66 TACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATAGCAACATGATAG
*
44759996 AAATGAA
131 AAATAAA
*
44760003 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGGAAATGAATAAGA-AATGGTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACAT-GAAATGAATAAGACAATGGTTGAAAG
* *
44760067 ATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATAGCATCATG-T
65 ATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACACCATAGCAACATGAT
44760130 CA-AAGATAAA
129 -AGAA-ATAAA
44760140 TAAGA
1 TAAGA
44760145 TCGTGGATGA
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
136 4 0.03
137 106 0.88
138 11 0.09
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.22
Consensus pattern (137 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACAATGGTTGAAAGA
TACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATAGCAACATGATAG
AAATAAA
Found at i:44760424 original size:16 final size:17
Alignment explanation
Indices: 44760403--44760435 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
44760393 ATGATGGAGC
44760403 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
44760419 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
44760436 TATACTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:44762780 original size:22 final size:21
Alignment explanation
Indices: 44762755--44762809 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
44762745 CATTTGTAAA
*
44762755 ATATGTATTAGATATTA-AATAG
1 ATAT-TATTA-ATATTATAAAAG
44762777 ATATTTATT-ATATTATAAAAG
1 ATA-TTATTAATATTATAAAAG
44762798 ATATTATTAATA
1 ATATTATTAATA
44762810 AATAATTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 11 0.38
21 10 0.34
22 7 0.24
23 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATTATTAATATTATAAAAG
Found at i:44762833 original size:29 final size:33
Alignment explanation
Indices: 44762782--44762848 Score: 88
Period size: 29 Copynumber: 2.2 Consensus size: 33
44762772 AATAGATATT
44762782 TATTATATTATAAAAGATATTAT-TAATAAATA
1 TATTATATTATAAAAGATATTATATAATAAATA
* *
44762814 -ATTATA-T-TAAAAGATTTTATATGATAAATA
1 TATTATATTATAAAAGATATTATATAATAAATA
44762844 TATTA
1 TATTA
44762849 AATAATGACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 12 0.39
30 9 0.29
31 10 0.32
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (33 bp):
TATTATATTATAAAAGATATTATATAATAAATA
Found at i:44762964 original size:85 final size:87
Alignment explanation
Indices: 44762869--44763045 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 87
44762859 AATGTATGGT
*
44762869 TATAATGAATACAAATGTACTAATAATATACACATGAATAAATAAATAATACTTATTA-TTAAGT
1 TATATTGAATACAAATGTACTAATAATATACACATGAATAAATAAATAATACTTATTATTTAAGT
44762933 ATAAATACATATGTG-TATATA
66 ATAAATACATATGTGTTATATA
44762954 TATATTGAATACAAATGTACTAATAATATACACATGAATAAATAAATAATACTTATTATTTAAGT
1 TATATTGAATACAAATGTACTAATAATATACACATGAATAAATAAATAATACTTATTATTTAAGT
44763019 ATAAATACATATGTGTTATATA
66 ATAAATACATATGTGTTATATA
44763041 TATAT
1 TATAT
44763046 ATATATTATA
Statistics
Matches: 89, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
85 57 0.64
86 21 0.24
87 11 0.12
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.37
Consensus pattern (87 bp):
TATATTGAATACAAATGTACTAATAATATACACATGAATAAATAAATAATACTTATTATTTAAGT
ATAAATACATATGTGTTATATA
Found at i:44763042 original size:2 final size:2
Alignment explanation
Indices: 44763035--44763068 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
44763025 ACATATGTGT
44763035 TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
44763069 TATGAAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:44763047 original size:17 final size:17
Alignment explanation
Indices: 44763034--44763071 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
44763024 TACATATGTG
44763034 TTATATATATATATATA
1 TTATATATATATATATA
44763051 TTATATATATATATATA
1 TTATATATATATATATA
44763068 TTAT
1 TTAT
44763072 GAAAAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTATATATATATATATA
Found at i:44763055 original size:15 final size:15
Alignment explanation
Indices: 44763037--44763066 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
44763027 ATATGTGTTA
44763037 TATATATATATATAT
1 TATATATATATATAT
44763052 TATATATATATATAT
1 TATATATATATATAT
44763067 ATTATGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATATATATAT
Found at i:44765051 original size:54 final size:54
Alignment explanation
Indices: 44764980--44765117 Score: 258
Period size: 54 Copynumber: 2.6 Consensus size: 54
44764970 ATTGTCGTTG
44764980 CAGGGGATTTAGCCTGGACTGGTAATCCCAACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCAACAATACTCTATGAGTTTATATTA
*
44765034 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCAACAATACTCTATGAGTTTATATTA
*
44765088 CAAGGGATTTAGCCTGGACTGGTAATCCCA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCA
44765118 CTGTAAGGAT
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCAACAATACTCTATGAGTTTATATTA
Found at i:44765203 original size:46 final size:46
Alignment explanation
Indices: 44765151--44765516 Score: 459
Period size: 46 Copynumber: 7.9 Consensus size: 46
44765141 GTGTGCTCTC
* * *
44765151 TGATATGAAATGTGTAACACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
44765197 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-A
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
44765242 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGA
1 -TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
44765289 TGATATGAAATGTGTAGGACCATGATTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
44765335 TGATA-GAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCG
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
44765381 TGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*** * *
44765427 TGACGGGAAAATGAATAAGAACATGGTTGAAAGATACCATGGCAACA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * *
44765474 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
44765517 TCACGTCAAA
Statistics
Matches: 290, Mismatches: 25, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
45 1 0.00
46 245 0.84
47 44 0.15
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:44765337 original size:24 final size:24
Alignment explanation
Indices: 44765263--44765343 Score: 62
Period size: 24 Copynumber: 3.5 Consensus size: 24
44765253 TGTGTAAGAC
*
44765263 CATGGTTGAAAGATACCATGGCAA
1 CATGATTGAAAGATACCATGGCAA
* ** *
44765287 GATGATATGAAATG-T-GTA-GG-AC
1 CATGAT-TGAAA-GATACCATGGCAA
44765309 CATGATTGAAAGATACCATGGCAA
1 CATGATTGAAAGATACCATGGCAA
*
44765333 CATGATAGAAA
1 CATGATTGAAA
44765344 ATGAATAAGA
Statistics
Matches: 41, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
20 1 0.02
21 6 0.15
22 7 0.17
23 4 0.10
24 16 0.39
25 6 0.15
26 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (24 bp):
CATGATTGAAAGATACCATGGCAA
Found at i:44765474 original size:24 final size:24
Alignment explanation
Indices: 44765401--44765475 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
44765391 TGAATAAGAC
44765401 CATGGTTGAAAGATACCATGGCAA
1 CATGGTTGAAAGATACCATGGCAA
* *
44765425 CATGACG-GGAAA-ATGA--ATAAG-AA
1 CATG--GTTGAAAGAT-ACCAT-GGCAA
44765448 CATGGTTGAAAGATACCATGGCAA
1 CATGGTTGAAAGATACCATGGCAA
44765472 CATG
1 CATG
44765476 ACAGAAAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 18
0.63 0.07 0.30
Matches are distributed among these distances:
21 1 0.03
22 5 0.13
23 11 0.29
24 15 0.39
25 5 0.13
26 1 0.03
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (24 bp):
CATGGTTGAAAGATACCATGGCAA
Found at i:44765820 original size:16 final size:17
Alignment explanation
Indices: 44765799--44765831 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
44765789 ATGATGGAGC
44765799 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
*
44765815 ATGAAATGATTTATATA
1 ATGAAATGATTGATATA
44765832 TATACTTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:44768387 original size:64 final size:66
Alignment explanation
Indices: 44768310--44768441 Score: 250
Period size: 64 Copynumber: 2.0 Consensus size: 66
44768300 AGATATTAAA
44768310 CTTGAAATGCATAATGTAGTGTATTAATGAGTTAA-TTTGTTGATATAGA-CTCGAGGATCAAAT
1 CTTGAAATGCATAATGTAGTGTATTAATGAGTTAATTTTGTTGATATAGACCTCGAGGATCAAAT
44768373 T
66 T
44768374 CTTGAAATGCATAATGTAGTGTATTAATGAGTTAATTTTGTTGATATAGACCTCGAGGATCAAAT
1 CTTGAAATGCATAATGTAGTGTATTAATGAGTTAATTTTGTTGATATAGACCTCGAGGATCAAAT
44768439 T
66 T
44768440 CT
1 CT
44768442 GGAGGTCGCT
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
64 35 0.53
65 14 0.21
66 17 0.26
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (66 bp):
CTTGAAATGCATAATGTAGTGTATTAATGAGTTAATTTTGTTGATATAGACCTCGAGGATCAAAT
T
Found at i:44770305 original size:13 final size:13
Alignment explanation
Indices: 44770287--44770313 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
44770277 GTCAGTTTTA
44770287 GGGAAAATTATCC
1 GGGAAAATTATCC
44770300 GGGAAAATTATCC
1 GGGAAAATTATCC
44770313 G
1 G
44770314 ATCTTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (13 bp):
GGGAAAATTATCC
Found at i:44773153 original size:39 final size:39
Alignment explanation
Indices: 44773101--44773298 Score: 335
Period size: 39 Copynumber: 5.1 Consensus size: 39
44773091 AATTATATTA
*
44773101 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
44773140 CCTGCACGAAGCCTAC-GGACTTTAGCCCTGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
44773178 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
44773217 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
44773256 CCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
44773295 CCAG
1 CCAG
44773299 TATCTTGCAT
Statistics
Matches: 148, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 35 0.24
39 113 0.76
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:44777697 original size:21 final size:20
Alignment explanation
Indices: 44777671--44777771 Score: 64
Period size: 21 Copynumber: 5.0 Consensus size: 20
44777661 GTTTTATATG
44777671 AAAAATATTTCATATATATAA
1 AAAAATATTTCAT-TATATAA
* * *
44777692 AAAAATAGTTGATGT-TTTAA
1 AAAAATATTTCAT-TATATAA
** *
44777712 AAAAATA--AAATATATTTAA
1 AAAAATATTTCAT-TATATAA
* *
44777731 CATAATATTTCATTATATAA
1 AAAAATATTTCATTATATAA
*
44777751 AATATATATTTCATTATATAA
1 AA-AAATATTTCATTATATAA
44777772 TTACATATTT
Statistics
Matches: 61, Mismatches: 15, Indels: 8
0.73 0.18 0.10
Matches are distributed among these distances:
18 3 0.05
19 10 0.16
20 18 0.30
21 30 0.49
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (20 bp):
AAAAATATTTCATTATATAA
Found at i:44791678 original size:37 final size:36
Alignment explanation
Indices: 44791637--44791733 Score: 88
Period size: 36 Copynumber: 2.6 Consensus size: 36
44791627 CATCAGTTAG
* *
44791637 TATAACAGTAAGATTTGCTTAGTTAAGC-TCTACTCAA
1 TATAA-AGTAAGATTTGCTCAATTAAGCTTC-ACTCAA
* * * * *
44791674 TATAAGGTATGATTTGCTCAATTGAGCTTCATTCAG
1 TATAAAGTAAGATTTGCTCAATTAAGCTTCACTCAA
44791710 TATAATAGTAAGATTTGGCTCAAT
1 TATAA-AGTAAGATTT-GCTCAAT
44791734 AGAACATACT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
36 26 0.54
37 15 0.31
38 7 0.15
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37
Consensus pattern (36 bp):
TATAAAGTAAGATTTGCTCAATTAAGCTTCACTCAA
Found at i:44792946 original size:24 final size:24
Alignment explanation
Indices: 44792919--44792964 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
44792909 CATATGTCTT
44792919 TTCATAGTT-AGATACAAATGCATA
1 TTCATA-TTCAGATACAAATGCATA
44792943 TTCATATTCAGATACAAATGCA
1 TTCATATTCAGATACAAATGCA
44792965 AACACAGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (24 bp):
TTCATATTCAGATACAAATGCATA
Found at i:44795302 original size:28 final size:27
Alignment explanation
Indices: 44795253--44795308 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
44795243 AAATCACTTC
*
44795253 AAAAAATTGAAATAATTCATAAAATATA
1 AAAAAATTGAAACAATTCAT-AAATATA
*
44795281 AAAAAATT-AAACAATTTTATAAATATA
1 AAAAAATTGAAACAA-TTCATAAATATA
44795308 A
1 A
44795309 TAATGCATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (27 bp):
AAAAAATTGAAACAATTCATAAATATA
Found at i:44795538 original size:56 final size:56
Alignment explanation
Indices: 44795477--44795591 Score: 230
Period size: 56 Copynumber: 2.1 Consensus size: 56
44795467 AATTAGAAGA
44795477 ATAACTTTTTTTCATTAATTCTTTGATGAATTTTTAATATATATATATATATATAT
1 ATAACTTTTTTTCATTAATTCTTTGATGAATTTTTAATATATATATATATATATAT
44795533 ATAACTTTTTTTCATTAATTCTTTGATGAATTTTTAATATATATATATATATATAT
1 ATAACTTTTTTTCATTAATTCTTTGATGAATTTTTAATATATATATATATATATAT
44795589 ATA
1 ATA
44795592 TATATATATA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (56 bp):
ATAACTTTTTTTCATTAATTCTTTGATGAATTTTTAATATATATATATATATATAT
Found at i:44795576 original size:2 final size:2
Alignment explanation
Indices: 44795569--44795603 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
44795559 TGAATTTTTA
44795569 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
44795604 ATGGCGTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:44797131 original size:67 final size:67
Alignment explanation
Indices: 44797023--44797152 Score: 242
Period size: 67 Copynumber: 1.9 Consensus size: 67
44797013 TTGTGTAATG
44797023 GAGAATTAAATATAAACATTATATTTACTTTTTATGGATTTTAATATTGGGCTAAATAAGGTAAG
1 GAGAATTAAATATAAACATTATATTTACTTTTTATGGATTTTAATATTGGGCTAAATAAGGTAAG
44797088 TC
66 TC
* *
44797090 GAGAATTAAATATAAATATTATATTTACTTTTTATGGATTTTAATATTGGGCTACATAAGGTA
1 GAGAATTAAATATAAACATTATATTTACTTTTTATGGATTTTAATATTGGGCTAAATAAGGTA
44797153 CGCCGATTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (67 bp):
GAGAATTAAATATAAACATTATATTTACTTTTTATGGATTTTAATATTGGGCTAAATAAGGTAAG
TC
Found at i:44800545 original size:2 final size:2
Alignment explanation
Indices: 44800538--44800567 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
44800528 TTGTAAAGAA
44800538 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44800568 GTGTGTATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44800572 original size:2 final size:2
Alignment explanation
Indices: 44800567--44800596 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
44800557 TATATATATA
*
44800567 TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
44800597 ACTGACTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.03, C:0.00, G:0.47, T:0.50
Consensus pattern (2 bp):
TG
Found at i:44808228 original size:14 final size:14
Alignment explanation
Indices: 44808209--44808235 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
44808199 GCTTCTGATA
44808209 ATCTATAAAACATT
1 ATCTATAAAACATT
44808223 ATCTATAAAACAT
1 ATCTATAAAACAT
44808236 AGGAAAGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (14 bp):
ATCTATAAAACATT
Found at i:44808964 original size:25 final size:25
Alignment explanation
Indices: 44808936--44809013 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
44808926 CAAAATAACA
44808936 TATTGATCAACATACATTAAAAAAT
1 TATTGATCAACATACATTAAAAAAT
*
44808961 TATTTGGT-AA-ATAACA--AAATAACA-
1 TA-TTGATCAACAT-ACATTAAA-AA-AT
44808985 TATTGATCAACATACATTAAAAAAT
1 TATTGATCAACATACATTAAAAAAT
44809010 TATT
1 TATT
44809014 TAATCGTACG
Statistics
Matches: 42, Mismatches: 2, Indels: 18
0.68 0.03 0.29
Matches are distributed among these distances:
23 7 0.17
24 12 0.29
25 16 0.38
26 7 0.17
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (25 bp):
TATTGATCAACATACATTAAAAAAT
Found at i:44808969 original size:49 final size:49
Alignment explanation
Indices: 44808916--44809014 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
44808906 TTTAATTAGA
44808916 TGGTAAATAACAAAATAACATATTGATCAACATACATTAAAAAATTATT
1 TGGTAAATAACAAAATAACATATTGATCAACATACATTAAAAAATTATT
44808965 TGGTAAATAACAAAATAACATATTGATCAACATACATTAAAAAATTATT
1 TGGTAAATAACAAAATAACATATTGATCAACATACATTAAAAAATTATT
44809014 T
1 T
44809015 AATCGTACGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (49 bp):
TGGTAAATAACAAAATAACATATTGATCAACATACATTAAAAAATTATT
Found at i:44814519 original size:12 final size:12
Alignment explanation
Indices: 44814502--44814531 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
44814492 TCTCACACGC
44814502 CCGTGTGATAGG
1 CCGTGTGATAGG
*
44814514 CCGTGTGTTAGG
1 CCGTGTGATAGG
44814526 CCGTGT
1 CCGTGT
44814532 AACTCACTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.20, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGATAGG
Found at i:44819822 original size:79 final size:79
Alignment explanation
Indices: 44819713--44819944 Score: 403
Period size: 79 Copynumber: 2.9 Consensus size: 79
44819703 TACTCGTTCA
* *
44819713 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
44819777 TTTAGTGACTCGCACC
64 TTTAGTGACTCGCACC
*
44819793 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATT
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
44819858 TAGTGACTCGCACC
66 TAGTGACTCGCACC
*
44819872 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
44819937 TAGTGACT
66 TAGTGACT
44819945 TAGCACAAAG
Statistics
Matches: 146, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
79 133 0.91
80 13 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
TAGTGACTCGCACC
Found at i:44819827 original size:39 final size:40
Alignment explanation
Indices: 44819711--44819967 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
44819701 GCTACTCGTT
* *
44819711 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
44819751 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
44819791 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
44819830 CAAATGCCTTCGGGACTTAACTCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
44819870 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
44819909 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
*
44819950 CAAA-GCCTTCGAGACTTA
1 CAAATGCCTTCGGGACTTA
44819968 GCTCGGACAT
Statistics
Matches: 188, Mismatches: 25, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 68 0.36
40 111 0.59
41 9 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:44819933 original size:119 final size:121
Alignment explanation
Indices: 44819711--44819974 Score: 349
Period size: 119 Copynumber: 2.2 Consensus size: 121
44819701 GCTACTCGTT
* *
44819711 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCTCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * * * *
44819775 GATTTAGTGACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAAC-TCGCA
66 GAATTAGTAACTCACACAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTTAGCA
* * * *
44819830 CAAATGCCTTCGGGACTTAACTCGGATT-TAGTGACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCTCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
44819893 GAATTAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTTAGCA
66 GAATTAGTAACTCACACAAATGCCTTCGGG-CTTAACCCGGAATTAGTAACTTAGCA
*
44819950 CAAA-GCCTTCGAGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCTCGGA
44819975 CATCATTCGA
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
118 34 0.27
119 82 0.65
120 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCTCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCACACAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTTAGCA
Found at i:44819958 original size:79 final size:79
Alignment explanation
Indices: 44819711--44819974 Score: 388
Period size: 79 Copynumber: 3.3 Consensus size: 79
44819701 GCTACTCGTT
* *
44819711 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
44819775 GATTTAGTGACTCGCAC
63 GATTTAGTGACTCGCAC
* *
44819792 CAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
1 CAAAGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
44819857 TTAGTGACTCGCAC
66 TTAGTGACTCGCAC
* *
44819871 CAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
1 CAAAGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
*
44819936 TTAGTGACTTAGCA-
66 TTAGTGAC-TCGCAC
* *
44819950 CAAAGCCTTCGAGACTTAGCTCGGA
1 CAAAGCCTTCG-GGCTTAGCCCGGA
44819975 CATCATTCGA
Statistics
Matches: 170, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
79 142 0.84
80 25 0.15
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAAGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTGACTCGCAC
Found at i:44822925 original size:40 final size:39
Alignment explanation
Indices: 44822760--44822943 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
44822750 AAATTGAATG
* * *
44822760 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
44822800 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
44822840 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
44822880 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
44822919 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
44822944 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:44822968 original size:80 final size:81
Alignment explanation
Indices: 44822800--44822988 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
44822790 GCTGGAAATT
* * * *
44822800 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
44822865 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
44822881 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
44822944 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
44822960 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
44822989 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:44829911 original size:40 final size:39
Alignment explanation
Indices: 44829747--44829929 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
44829737 AAATTGAATG
* *
44829747 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
44829786 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
44829826 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
44829866 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
44829905 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
44829930 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.13
40 92 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:44829912 original size:80 final size:80
Alignment explanation
Indices: 44829790--44829938 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
44829780 GAAATTATAA
* * * *
44829790 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
44829855 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* * * * * * *
44829870 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
44829934 GTGCG
65 GTGCG
44829939 GGTTACCATA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:44829954 original size:80 final size:81
Alignment explanation
Indices: 44829786--44829967 Score: 181
Period size: 80 Copynumber: 2.3 Consensus size: 81
44829776 GCTGGAAATT
* * * *
44829786 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
44829851 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
44829867 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
44829930 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* *
44829946 ATAACCGGGCTATGTCCCGAAG
1 ATAACCGGGCTAAGACCCGAAG
44829968 CGATTGATCG
Statistics
Matches: 81, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
79 2 0.02
80 79 0.98
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:44837960 original size:40 final size:38
Alignment explanation
Indices: 44837830--44837977 Score: 111
Period size: 40 Copynumber: 3.8 Consensus size: 38
44837820 TGAGAAATTG
* * *
44837830 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * * *
44837870 AAT-TATAACCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
44837907 AGTGGCTACATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
44837947 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
44837978 CTTGGTGCGG
Statistics
Matches: 84, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
37 4 0.05
38 2 0.02
39 3 0.04
40 75 0.89
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:44840094 original size:28 final size:28
Alignment explanation
Indices: 44840029--44840127 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
44840019 TCATGAATTG
* * *
44840029 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
44840058 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
44840086 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
44840114 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
44840128 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:44852306 original size:25 final size:25
Alignment explanation
Indices: 44852268--44852315 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
44852258 CAATAAAATA
44852268 TATGCATTTAAGTCAATAAATCTTT
1 TATGCATTTAAGTCAATAAATCTTT
44852293 TATGCAATTT-AGTCAATAAATCT
1 TATGC-ATTTAAGTCAATAAATCT
44852316 AAAACTATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (25 bp):
TATGCATTTAAGTCAATAAATCTTT
Found at i:44855758 original size:12 final size:11
Alignment explanation
Indices: 44855739--44855768 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
44855729 ATGTTGCTAC
44855739 TATTTTATTAT
1 TATTTTATTAT
44855750 TACTTTTATTAT
1 TA-TTTTATTAT
44855762 TATTTTA
1 TATTTTA
44855769 GAGGCATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:44864816 original size:27 final size:27
Alignment explanation
Indices: 44864223--44864807 Score: 900
Period size: 27 Copynumber: 21.7 Consensus size: 27
44864213 TACCCGAACT
44864223 CTTATGTGATAAAATGACGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
* *
44864250 CTTATATGATAAAATGACGATTTTATC
1 CTTATGTGATAAAATGACGATTTTACC
* * * *
44864277 CATATGTGATAAAATTACGATATTGCC
1 CTTATGTGATAAAATGACGATTTTACC
*
44864304 CTTATGTGATAAAATGATGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
*
44864331 CTTATGTGATAAAATGACGATTTTATC
1 CTTATGTGATAAAATGACGATTTTACC
* * * *
44864358 CATATGTGATAAAATTACGATATTGCC
1 CTTATGTGATAAAATGACGATTTTACC
*
44864385 CTTATGTGATAAAATGACGATTTCACC
1 CTTATGTGATAAAATGACGATTTTACC
*
44864412 CTTATGTGATAAAATGACAATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
* * * **
44864439 CTTATGTGATCAAATGATGATATTGTC
1 CTTATGTGATAAAATGACGATTTTACC
*
44864466 CTTATGTGATAAAATGATGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
*
44864493 CTTATGTGATAAAATGATGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
44864520 CTTATGTGATAAAATGACGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
44864547 CTTATGTGATAAAATGACGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
44864574 CTTATGTGATAAAATGACGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
* * *
44864601 CTTATGTGATAAAATGACAATATTGCC
1 CTTATGTGATAAAATGACGATTTTACC
* * *
44864628 CTTATATGATAAAATGACGATATTGCC
1 CTTATGTGATAAAATGACGATTTTACC
44864655 CTTATGTGATAAAATGACGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
*
44864682 CTTATGTGATAAAATGACGATATTACC
1 CTTATGTGATAAAATGACGATTTTACC
* *
44864709 ATTATGTGATAAAATGACGATTTTATC
1 CTTATGTGATAAAATGACGATTTTACC
44864736 CTTATGTGATAAAATGACGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
44864763 CTTATGTGATAAAATGACGATTTTACC
1 CTTATGTGATAAAATGACGATTTTACC
44864790 CTTATGTGATAAAATGAC
1 CTTATGTGATAAAATGAC
44864808 CGAAATACCT
Statistics
Matches: 506, Mismatches: 52, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 506 1.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.37
Consensus pattern (27 bp):
CTTATGTGATAAAATGACGATTTTACC
Done.