Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 149 of 410
Found at i:45063959 original size:6 final size:6
Alignment explanation
Indices: 45063948--45063994 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
45063938 GTGTGTTGAA
* * *
45063948 TACTGT TACTGT TACTGT TACTGC TACTGC TACCGT TACTGAT TACT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACT
45063995 ATTTAGGTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
6 31 0.86
7 5 0.14
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (6 bp):
TACTGT
Found at i:45066300 original size:50 final size:50
Alignment explanation
Indices: 45066204--45066296 Score: 145
Period size: 48 Copynumber: 1.9 Consensus size: 50
45066194 GCTAAATGAC
* *
45066204 CATGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTTAT
1 CATGTATATTCGACCACATAGGTATATACATATGTGATGTTATATTTTAT
*
45066254 CATGTATATTCGACCATATA-G-ATATACATATGTGATGTTATAT
1 CATGTATATTCGACCACATAGGTATATACATATGTGATGTTATAT
45066297 ATTTGATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 21 0.52
49 1 0.03
50 18 0.45
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (50 bp):
CATGTATATTCGACCACATAGGTATATACATATGTGATGTTATATTTTAT
Found at i:45069896 original size:69 final size:70
Alignment explanation
Indices: 45069764--45069896 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
45069754 TAGTTTATTA
* * * *
45069764 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
45069829 CTTAG
66 CTTAG
45069834 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
45069897 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:45071268 original size:47 final size:47
Alignment explanation
Indices: 45071217--45071511 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
45071207 ACAAGATATG
*
45071217 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
45071264 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
45071311 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
45071358 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
45071405 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
45071452 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
45071499 TAAATGTGATAAG
1 TATATGTGATAAG
45071512 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:45073956 original size:40 final size:40
Alignment explanation
Indices: 45073897--45074283 Score: 526
Period size: 40 Copynumber: 9.7 Consensus size: 40
45073887 AGGTCTCGAC
45073897 GATG-ATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
45073936 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* **
45073976 GATGTATCCGGGATAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
** ** *
45074016 GATGTATCCGGAATAAGTTCTGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
45074056 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
*
45074096 GATGTATCCGGGCCAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
** **
45074136 GATGTATCCGGAATAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* ***
45074176 GATGTATCCGGGATAAATTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* * * * *
45074216 GATATATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* * * *
45074256 GTTATATCC-GGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGCCCCGAAGAGCA
45074284 ATCATGCTGG
Statistics
Matches: 317, Mismatches: 30, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
39 19 0.06
40 298 0.94
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
Found at i:45076471 original size:69 final size:70
Alignment explanation
Indices: 45076339--45076471 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
45076329 TAGTTTATTA
* * * *
45076339 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
45076404 CTTAG
66 CTTAG
45076409 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
45076472 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:45077845 original size:47 final size:47
Alignment explanation
Indices: 45077794--45078088 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
45077784 ACAAGATATG
*
45077794 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
45077841 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
45077888 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
45077935 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
45077982 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
45078029 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
45078076 TAAATGTGATAAG
1 TATATGTGATAAG
45078089 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:45080661 original size:15 final size:18
Alignment explanation
Indices: 45080624--45080661 Score: 55
Period size: 15 Copynumber: 2.3 Consensus size: 18
45080614 TAGTTTTAGT
45080624 TGTTGAAAATAATTTACC
1 TGTTGAAAATAATTTACC
45080642 TGTTG-AAA-AATTTA-C
1 TGTTGAAAATAATTTACC
45080657 TGTTG
1 TGTTG
45080662 CCTCTGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 6 0.30
16 6 0.30
17 3 0.15
18 5 0.25
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.42
Consensus pattern (18 bp):
TGTTGAAAATAATTTACC
Found at i:45081290 original size:21 final size:20
Alignment explanation
Indices: 45081252--45081291 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
45081242 CTCCTTAAAA
* *
45081252 AAAATAATATATATCATTTC
1 AAAATAATAAATAACATTTC
45081272 AAAATAATAAATTAACATTT
1 AAAATAATAAA-TAACATTT
45081292 TAACATTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATAATAAATAACATTTC
Found at i:45082308 original size:5 final size:5
Alignment explanation
Indices: 45082292--45082361 Score: 56
Period size: 5 Copynumber: 14.0 Consensus size: 5
45082282 GAATGAACTT
45082292 TTAAA TTAAAA TTAAA TTAAA --AGAA TTAAA TTAAA TTAAA TTATAA
1 TTAAA TT-AAA TTAAA TTAAA TTA-AA TTAAA TTAAA TTAAA TTA-AA
* * * *
45082338 -AAAA ATAAA TTTAA TTATA TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA
45082362 ACTTTTCAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
3 1 0.02
4 4 0.08
5 39 0.75
6 8 0.15
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (5 bp):
TTAAA
Found at i:45082326 original size:25 final size:24
Alignment explanation
Indices: 45082292--45082362 Score: 88
Period size: 25 Copynumber: 2.9 Consensus size: 24
45082282 GAATGAACTT
*
45082292 TTAAATTAAAATTAAATTAAAAGAA
1 TTAAATT-AAATTAAATTAAAAAAA
45082317 TTAAATTAAATTAAATTATAAAAAA
1 TTAAATTAAATTAAATTA-AAAAAA
* * *
45082342 ATAAATTTAATTATATTAAAA
1 TTAAATTAAATTAAATTAAAA
45082363 CTTTTCAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
24 14 0.34
25 27 0.66
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (24 bp):
TTAAATTAAATTAAATTAAAAAAA
Found at i:45082348 original size:20 final size:23
Alignment explanation
Indices: 45082293--45082356 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 23
45082283 AATGAACTTT
*
45082293 TAAATTAAAATTAAATTAAAAGAA
1 TAAATT-AAATTAAATTATAAGAA
45082317 TTAAATTAAATTAAATTATAA-AA
1 -TAAATTAAATTAAATTATAAGAA
*
45082340 -AAA-TAAATTTAATTATA
1 TAAATTAAATTAAATTATA
45082357 TTAAAACTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.35
21 3 0.08
23 2 0.05
24 13 0.35
25 6 0.16
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (23 bp):
TAAATTAAATTAAATTATAAGAA
Found at i:45082954 original size:6 final size:6
Alignment explanation
Indices: 45082943--45082973 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
45082933 TTTAAGTGAA
45082943 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
45082974 GAACTAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:45083460 original size:24 final size:24
Alignment explanation
Indices: 45083428--45083476 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
45083418 TGATAAGTTG
45083428 AGATTTGGTAAACAGAAAAACCTT
1 AGATTTGGTAAACAGAAAAACCTT
45083452 AGATTTGGTAAACAGAAAAACCTT
1 AGATTTGGTAAACAGAAAAACCTT
45083476 A
1 A
45083477 CTTCATCCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.24
Consensus pattern (24 bp):
AGATTTGGTAAACAGAAAAACCTT
Found at i:45084248 original size:2 final size:2
Alignment explanation
Indices: 45084241--45084274 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
45084231 TTTTCGAATA
45084241 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45084275 CCTCCCTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45084725 original size:2 final size:2
Alignment explanation
Indices: 45084718--45084765 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
45084708 AGGAGAGTTC
*
45084718 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
45084759 AT TT AT A
1 AT AT AT A
45084766 CATAATCACA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:45098108 original size:59 final size:59
Alignment explanation
Indices: 45098003--45098115 Score: 145
Period size: 59 Copynumber: 1.9 Consensus size: 59
45097993 CAAGAGGCCT
* * *
45098003 AAACCGATGCTGGCCCAACTCTTACTCTATAGTTGGTCTGCTATAAGAGCCATGGGCTC
1 AAACCGATGCTGGCCCAACTCTTACTCCATAGTTGATCTGCCATAAGAGCCATGGGCTC
* * * * * *
45098062 AAACCGATGCTGGTCTAATTCTTGCTCCATGGTTGATCTGCCATAAGGGCCATG
1 AAACCGATGCTGGCCCAACTCTTACTCCATAGTTGATCTGCCATAAGAGCCATG
45098116 ATACATACAT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
59 45 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (59 bp):
AAACCGATGCTGGCCCAACTCTTACTCCATAGTTGATCTGCCATAAGAGCCATGGGCTC
Found at i:45106171 original size:18 final size:17
Alignment explanation
Indices: 45106138--45106170 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
45106128 GTTTAGGGTT
45106138 AGGGTTTGGATTTTTTC
1 AGGGTTTGGATTTTTTC
45106155 AGGGTTTAGG-TTTTTT
1 AGGGTTT-GGATTTTTT
45106171 TTGAGTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.12, C:0.03, G:0.30, T:0.55
Consensus pattern (17 bp):
AGGGTTTGGATTTTTTC
Found at i:45106501 original size:7 final size:7
Alignment explanation
Indices: 45106491--45106516 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
45106481 CTATTAATTT
45106491 TAAATAC
1 TAAATAC
45106498 TAAATAC
1 TAAATAC
45106505 TAAATAC
1 TAAATAC
45106512 TAAAT
1 TAAAT
45106517 TAGAGTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.31
Consensus pattern (7 bp):
TAAATAC
Found at i:45106885 original size:126 final size:126
Alignment explanation
Indices: 45106659--45107040 Score: 595
Period size: 126 Copynumber: 3.0 Consensus size: 126
45106649 TTTCTGCAAG
* * ** *
45106659 AATAATTCTGAGCAGACGTTTCTGGAA-AAATAATGTTGGAAAACGCTTCAAGTAGGATGCACTG
1 AATAATTCTGAGTAGACGTTTCT-GAACAAATAGTG-CCGAAAACGCTTCAAGCAGGATGCACTG
* *
45106723 TCAGCAAAATTTCTGGAAAAAGCTTCCACGTGGACGCTCTTTTGCTACAGTAATTCGTAGAAA
64 TCAGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
45106786 AATAATTCTGAGTAGACGTTTCTAAACAAATAGTGCCGAAGACGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
* *
45106851 AGCAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * *
45106912 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCAAAAACGCTTCAAGCAGGATGCAATGTT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
* *
45106977 AGCAAAATTTCTAGAAAAAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
45107038 AAT
1 AAT
45107041 GAGGCTATAA
Statistics
Matches: 234, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
126 205 0.88
127 29 0.12
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:45109197 original size:14 final size:15
Alignment explanation
Indices: 45109178--45109234 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
45109168 AATCTTTAAG
45109178 GATATG-CAATCTTA
1 GATATGACAATCTTA
45109192 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
45109209 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
45109228 GATATGA
1 GATATGA
45109235 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:45109219 original size:36 final size:38
Alignment explanation
Indices: 45109178--45109256 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
45109168 AATCTTTAAG
45109178 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
45109214 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
45109254 GAT
1 GAT
45109257 CTTGTAATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:45109225 original size:19 final size:19
Alignment explanation
Indices: 45109178--45109256 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
45109168 AATCTTTAAG
45109178 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45109197 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45109214 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45109233 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
45109254 GAT
1 GAT
45109257 CTTGTAATAT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:45109769 original size:25 final size:22
Alignment explanation
Indices: 45109713--45109769 Score: 53
Period size: 25 Copynumber: 2.5 Consensus size: 22
45109703 TAAATGTTCT
45109713 ATTTTTTTT-TTTGTGTATGTC
1 ATTTTTTTTATTTGTGTATGTC
* * *
45109734 ATTTATCTTATTTGTGCATAGTTTC
1 ATTTTTTTTATTTGTG--TA-TGTC
45109759 ATTTTTTTTAT
1 ATTTTTTTTAT
45109770 GCTATGTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 7 0.26
22 6 0.22
24 2 0.07
25 12 0.44
ACGTcount: A:0.16, C:0.07, G:0.11, T:0.67
Consensus pattern (22 bp):
ATTTTTTTTATTTGTGTATGTC
Found at i:45116203 original size:93 final size:93
Alignment explanation
Indices: 45116091--45116261 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45116081 GCCCATAAGT
* *
45116091 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45116156 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45116184 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45116249 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45116262 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45116258 original size:46 final size:46
Alignment explanation
Indices: 45116083--45116258 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
45116073 TGTAACCCGC
* * *
45116083 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
45116129 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
45116179 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
45116222 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45116259 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:45121691 original size:93 final size:93
Alignment explanation
Indices: 45121581--45121751 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
45121571 GCCCATAAGT
* * * *
45121581 GAACTCGGATTGAACTCAACGAGTTCGGGCGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
45121646 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
45121674 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
45121739 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45121752 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45121748 original size:46 final size:46
Alignment explanation
Indices: 45121573--45121748 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
45121563 TGTAACCCGC
* * * *
45121573 CCATAAGTGAACTCGGATTGAACTCAACGAGTTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
45121619 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * *
45121669 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
45121712 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45121749 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:45124454 original size:205 final size:204
Alignment explanation
Indices: 45124093--45124844 Score: 1233
Period size: 205 Copynumber: 3.7 Consensus size: 204
45124083 GCAGATCTGG
*
45124093 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
** * *
45124158 GATTTGGTTTTCGTGTGCTTACGTTGACGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
45124223 AGAACAAATCGAAGTTTTGTATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
130 AGAACAAATCGAAGTCTGGCATCTCCATTTCAACGGAGAGCAGATACATAGCAGATCTAACCTTC
45124288 ATATGTTTATA
195 A-ATGTTTATA
*
45124299 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGATATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
45124364 ATTTGGTTTTCACATGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
45124429 GAACAAATCGAAGTCTGGCATCTCCATTTCAACGGAGAGCAGATACATGGTAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCAACGGAGAGCAGATACATAGCAGATCTAACCTTCA
45124494 GATGTTTATA
196 -ATGTTTATA
45124504 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
45124569 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTTGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
45124634 GAACAAATCGAAGTCTGGCATCTCCATTTCAATGGAGAGCAGATACATAACAGATCTAACTTTC-
131 GAACAAATCGAAGTCTGGCATCTCCATTTCAACGGAGAGCAGATACATAGCAGATCTAACCTTCA
*
45124698 A-G-ATA-A
196 ATGTTTATA
*
45124704 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
45124769 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
45124834 GAACAAATCGA
131 GAACAAATCGA
45124845 GGAAATAGAT
Statistics
Matches: 513, Mismatches: 33, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
200 136 0.27
201 2 0.00
202 1 0.00
203 1 0.00
205 366 0.71
206 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (204 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATCTCCATTTCAACGGAGAGCAGATACATAGCAGATCTAACCTTCA
ATGTTTATA
Found at i:45125488 original size:19 final size:19
Alignment explanation
Indices: 45125464--45125545 Score: 125
Period size: 19 Copynumber: 4.5 Consensus size: 19
45125454 ATGGAAATAT
45125464 AATCTTAGATATGATATGC
1 AATCTTAGATATGATATGC
45125483 AATCTTAGATATGATA--C
1 AATCTTAGATATGATATGC
*
45125500 AATCTTAGATATGAT-TAC
1 AATCTTAGATATGATATGC
*
45125518 AATCTTAGATATGATATGT
1 AATCTTAGATATGATATGC
45125537 AATCTTAGA
1 AATCTTAGA
45125546 AGATATGATT
Statistics
Matches: 58, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
17 16 0.28
18 16 0.28
19 26 0.45
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (19 bp):
AATCTTAGATATGATATGC
Found at i:45125504 original size:17 final size:17
Alignment explanation
Indices: 45125464--45125533 Score: 113
Period size: 17 Copynumber: 3.9 Consensus size: 17
45125454 ATGGAAATAT
45125464 AATCTTAGATATGATATGC
1 AATCTTAGATATGATA--C
45125483 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
45125500 AATCTTAGATATGATTAC
1 AATCTTAGATATGA-TAC
45125518 AATCTTAGATATGATA
1 AATCTTAGATATGATA
45125534 TGTAATCTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.34
18 17 0.34
19 16 0.32
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:45125520 original size:18 final size:18
Alignment explanation
Indices: 45125464--45125532 Score: 113
Period size: 18 Copynumber: 3.8 Consensus size: 18
45125454 ATGGAAATAT
*
45125464 AATCTTAGATATGATATGC
1 AATCTTAGATATGAT-TAC
45125483 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
45125500 AATCTTAGATATGATTAC
1 AATCTTAGATATGATTAC
45125518 AATCTTAGATATGAT
1 AATCTTAGATATGAT
45125533 ATGTAATCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
17 16 0.33
18 18 0.38
19 14 0.29
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:45125528 original size:35 final size:36
Alignment explanation
Indices: 45125464--45125533 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 36
45125454 ATGGAAATAT
*
45125464 AATCTTAGATATGATATGCAATCTTAGATATGATAC
1 AATCTTAGATATGATATACAATCTTAGATATGATAC
45125500 AATCTTAGATATGAT-TACAATCTTAGATATGATA
1 AATCTTAGATATGATATACAATCTTAGATATGATA
45125534 TGTAATCTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.55
36 15 0.45
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (36 bp):
AATCTTAGATATGATATACAATCTTAGATATGATAC
Found at i:45125552 original size:22 final size:23
Alignment explanation
Indices: 45125524--45125568 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
45125514 TTACAATCTT
45125524 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
45125546 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
45125569 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:45125578 original size:22 final size:23
Alignment explanation
Indices: 45125534--45125578 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
45125524 AGATATGATA
*
45125534 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
45125557 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
45125579 GTAGATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:45127849 original size:93 final size:93
Alignment explanation
Indices: 45127737--45127908 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
45127727 CGCCCATAAG
* *
45127737 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
45127802 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
45127830 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45127895 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
45127909 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:45127905 original size:46 final size:46
Alignment explanation
Indices: 45127730--45127905 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
45127720 TGTAACCCGC
* * *
45127730 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
45127776 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
45127826 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
45127869 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
45127906 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:45135688 original size:41 final size:41
Alignment explanation
Indices: 45135642--45135719 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
45135632 AGCGTCCACT
* * *
45135642 TGGGAGCTTTTTCCAAAAATTTTGCTAACAGTGCATCCATG
1 TGGGAGCTTTCTCCAAAAATTTTACTAACAGTACATCCATG
* *
45135683 TGGGAGCTTTCTCCAGAAATTTTACTGACAGTACATC
1 TGGGAGCTTTCTCCAAAAATTTTACTAACAGTACATC
45135720 TTGCTTTAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (41 bp):
TGGGAGCTTTCTCCAAAAATTTTACTAACAGTACATCCATG
Found at i:45137442 original size:126 final size:126
Alignment explanation
Indices: 45137217--45137598 Score: 595
Period size: 126 Copynumber: 3.0 Consensus size: 126
45137207 TTATAGCCTC
* * *
45137217 ATTTTTCTACGAACTATTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTTCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
* *
45137282 ACAGTACATCCTACTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
45137343 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
* * *
45137408 ACAGTGTATCCTGCATGAAGCGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
45137469 ATTTTTCTACAAAATACTGTAGCAAAAGAGCGTCTACGTGGGAGCTTTTTCTAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
* ** * *
45137534 ACAGTGCATCCTGCTTAAAGAATTTTCCGACGCTATTTTTTCAGAAACGTC-AGCTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTT-CGACACTATTTGTTCAGAAACGTCTA-CTCAGAATT
45137596 ATT
1 ATT
45137599 CTTGCAGAAA
Statistics
Matches: 235, Mismatches: 19, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
126 202 0.86
127 33 0.14
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:45137932 original size:20 final size:20
Alignment explanation
Indices: 45137907--45137979 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 20
45137897 TCTTGTATGT
45137907 ATCAATTAATCCTAAATTTA
1 ATCAATTAATCCTAAATTTA
* **
45137927 ATCAATTAACCCTAAACCCT-
1 ATCAATTAATCCTAAA-TTTA
*
45137947 A--AATCAATCC-ATAATTTA
1 ATCAATTAATCCTA-AATTTA
45137965 ATCAATTAATCCTAA
1 ATCAATTAATCCTAA
45137980 TACCCGAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 12
0.66 0.14 0.20
Matches are distributed among these distances:
17 2 0.05
18 10 0.26
20 25 0.64
21 2 0.05
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (20 bp):
ATCAATTAATCCTAAATTTA
Found at i:45139279 original size:125 final size:124
Alignment explanation
Indices: 45139043--45139424 Score: 557
Period size: 125 Copynumber: 3.0 Consensus size: 124
45139033 ATTTATAGCC
* * * *
45139043 TTATTTTTCTACAAACTACTGCAGCAAAAGAACGTCCACGTGGGAGCTTTCTTCTGAAATTTTAC
1 TTATTTTTCTACGAACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTT-TTCAGAAATTTTGC
45139108 TGACAGTGCATCCTGCTTGAAGCGTTTTTGGCACTGTTTGTTCAGAAACGTCTACTCAGAA
65 TGACAGTGCATCCTGCTTGAAGCGTTTTTGGCACT-TTTGTTCAGAAACGTCTACTCAGAA
45139169 TTATTTTTCTACGAACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTTTTCAGAAATTTTGCT
1 TTATTTTTCTACGAACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTTTTCAGAAATTTTGCT
* * * * *
45139234 GATAGTGCATTCTGCTTGAAGCATTTTTGGCACTATTTGTTCAGAAACGTCTATTCAAAA
66 GACAGTGCATCCTGCTTGAAGCGTTTTTGGCACT-TTTGTTCAGAAACGTCTACTCAGAA
* * * * *
45139294 TTATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTAGGAGCTTTTCCAAAAATTTTGCT
1 TTATTTTTCTACGAACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTTTTCAGAAATTTTGCT
* * * *
45139359 GACAGTGCATCCTGCTTGAAGCGTTTTCCGACACTTTTTTTCTAGAAACGTCTGCTCAGAA
66 GACAGTGCATCCTGCTTGAAGCGTTTT-TGGCACTTTTGTTC-AGAAACGTCTACTCAGAA
45139420 TTATT
1 TTATT
45139425 CTTGCAGAAA
Statistics
Matches: 230, Mismatches: 24, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
125 157 0.68
126 73 0.32
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (124 bp):
TTATTTTTCTACGAACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTTTTCAGAAATTTTGCT
GACAGTGCATCCTGCTTGAAGCGTTTTTGGCACTTTTGTTCAGAAACGTCTACTCAGAA
Found at i:45139757 original size:20 final size:20
Alignment explanation
Indices: 45139732--45139801 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
45139722 TCTTGTATGT
45139732 ATCAATTAACCCAAAATTTA
1 ATCAATTAACCCAAAATTTA
* *
45139752 ATCAATTAACCCTAAACTCTAA
1 ATCAATTAACCC-AAAAT-TTA
*
45139774 ATCAA-T---CCATAATTTA
1 ATCAATTAACCCAAAATTTA
45139790 ATCAATTAACCC
1 ATCAATTAACCC
45139802 TAATACCCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
16 7 0.18
17 4 0.10
18 2 0.05
20 14 0.36
21 5 0.13
22 7 0.18
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (20 bp):
ATCAATTAACCCAAAATTTA
Found at i:45141631 original size:18 final size:18
Alignment explanation
Indices: 45141608--45141645 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
45141598 TCATGAAGCA
45141608 TAGATGTACAAAATATTC
1 TAGATGTACAAAATATTC
45141626 TAGATGTACAAAATATTC
1 TAGATGTACAAAATATTC
45141644 TA
1 TA
45141646 ACATTTCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (18 bp):
TAGATGTACAAAATATTC
Found at i:45142367 original size:22 final size:21
Alignment explanation
Indices: 45142337--45142402 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
45142327 TACAAATTAA
45142337 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
45142359 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
45142380 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
45142399 ATCT
1 ATCT
45142403 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:45142389 original size:19 final size:19
Alignment explanation
Indices: 45142354--45142432 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
45142344 AGATTACAAG
45142354 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
45142375 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
45142394 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
45142411 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
45142430 ATC
1 ATC
45142433 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:45142396 original size:14 final size:15
Alignment explanation
Indices: 45142376--45142432 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
45142366 AGATTGCATA
45142376 TCATATCTAAGATTG
1 TCATATCTAAGATTG
45142391 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
45142410 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
45142427 -CATATC
1 TCATATC
45142433 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:45142418 original size:36 final size:39
Alignment explanation
Indices: 45142354--45142432 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
45142344 AGATTACAAG
45142354 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
45142394 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
45142430 ATC
1 ATC
45142433 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:45144812 original size:80 final size:80
Alignment explanation
Indices: 45144679--45144864 Score: 214
Period size: 80 Copynumber: 2.3 Consensus size: 80
45144669 ATTGAATGAT
* * * * * * *
45144679 ATCCGGGCTAAGCCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAGGACATTTATGCTAGAAATTAAATCCGGGCTAAGACCCGAAGGC-AT
* *
45144744 T-GTGCTAGTGGCTAC
65 TCGTGCAAGTGGCTAA
* * *
45144759 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAGTTAAATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAGGACATTTATGCTAGAAATTAAATCCGGGCTAAGACCCGAAGGCATT
* *
45144824 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGCTAA
45144839 ATCCGGGCTAAGACCCGAAGG-CATTT
1 ATCCGGGCTAAGACCCG-AGGACATTT
45144865 GTGCAAATCG
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 3 0.03
80 84 0.93
81 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAGGACATTTATGCTAGAAATTAAATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGCTAA
Found at i:45144869 original size:40 final size:40
Alignment explanation
Indices: 45144719--45144870 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
45144709 TGGAAATTAT
* * * * * *
45144719 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
* * *
45144759 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAGTTAA
* *
45144799 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
45144839 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
45144871 ATCGTGATAT
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.03
40 91 0.94
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
Found at i:45144883 original size:40 final size:38
Alignment explanation
Indices: 45144716--45144900 Score: 156
Period size: 40 Copynumber: 4.7 Consensus size: 38
45144706 TGCTGGAAAT
* * *
45144716 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * * *
45144755 CTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAG
1 -TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT-G
* *
45144795 TTAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TG
* *
45144835 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * *
45144875 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
45144901 CTTGGTGCGG
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 5 0.04
40 113 0.93
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG
Found at i:45144883 original size:80 final size:80
Alignment explanation
Indices: 45144717--45144900 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
45144707 GCTGGAAATT
* * *
45144717 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
* * *
45144782 TTTATGCTAGTAGTT
66 TTTATGCAAATAGTG
* * * *
45144797 AAATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGG-
1 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTGGCTAAATCCGGGCTAAGACCCG-AGGA
* *
45144860 CATTTGTGCAAATCGTG
64 CATTTATGCAAATAGTG
* *
45144877 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGTTAAGACCCGAAGGC
45144901 CTTGGTGCGG
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 80 0.93
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
TTTATGCAAATAGTG
Found at i:45155016 original size:30 final size:29
Alignment explanation
Indices: 45154922--45155023 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
45154912 TATAGTGAAT
* * *
45154922 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
45154951 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
45154979 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
45155009 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
45155024 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:45156844 original size:40 final size:40
Alignment explanation
Indices: 45156774--45156991 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
45156764 AAGCCAGGTA
* * ***
45156774 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTTGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
45156813 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
45156853 CCTTTGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45156893 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
45156933 CCTTCGGGACTTAGCCCGGA-ACTAGTCATTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
45156973 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45156992 TTATCATCCG
Statistics
Matches: 157, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 13 0.08
40 144 0.92
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45162000 original size:40 final size:40
Alignment explanation
Indices: 45161930--45162147 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
45161920 AAGCCAGGTA
* * ***
45161930 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTTGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
45161969 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45162009 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45162049 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
45162089 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
45162129 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45162148 TTATCATCCG
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 149 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45167537 original size:42 final size:40
Alignment explanation
Indices: 45167475--45167625 Score: 140
Period size: 42 Copynumber: 3.6 Consensus size: 40
45167465 CGAGGCTATA
*
45167475 TGTAAGACCATATCTGGGATATGGCATCATTATGAGACTTCG
1 TGTAAGACCATATCTAGGATATGGCATCA-TATGAGA-TTCG
*
45167517 TGTAAGACCATATCTAGGATATGACATCGATATGAGATTTCG
1 TGTAAGACCATATCTAGGATATGGCATC-ATATGAGA-TTCG
* ** * * * * * *
45167559 TGTAAAACCATGGCTAGGTTATTAGCATCGGTACGAGATCCCA
1 TGTAAGACCATATCTAGGATA-TGGCATC-ATATGAGAT-TCG
45167602 TGTAAGACCATATCTAGGATATGG
1 TGTAAGACCATATCTAGGATATGG
45167626 AATTGGTGTA
Statistics
Matches: 88, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 57 0.65
43 31 0.35
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (40 bp):
TGTAAGACCATATCTAGGATATGGCATCATATGAGATTCG
Found at i:45170557 original size:24 final size:24
Alignment explanation
Indices: 45170525--45170581 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
45170515 CTTATGTTTG
45170525 TCAAAGGATATTACCAACATTTTC
1 TCAAAGGATATTACCAACATTTTC
*
45170549 TCAAAGGATATTACCAACATTTTG
1 TCAAAGGATATTACCAACATTTTC
45170573 TCAAAGGAT
1 TCAAAGGAT
45170582 TCTCGATGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.32
Consensus pattern (24 bp):
TCAAAGGATATTACCAACATTTTC
Found at i:45175769 original size:16 final size:17
Alignment explanation
Indices: 45175738--45175770 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
45175728 TGGTAAATTT
45175738 ATATTTAATTATGTTATA
1 ATATTTAA-TATGTTATA
45175756 ATATTTAA-ATGTTAT
1 ATATTTAATATGTTAT
45175771 GTGCATGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
ATATTTAATATGTTATA
Found at i:45181366 original size:35 final size:35
Alignment explanation
Indices: 45181327--45181399 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
45181317 ACACATTCTT
*
45181327 TATTCTCGTCAGATCACTCTCACATAAATAAAATA
1 TATTCTCGTCAGATCAATCTCACATAAATAAAATA
*
45181362 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAAAATA
45181397 TAT
1 TAT
45181400 ATCACATACC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAAAATA
Found at i:45202229 original size:44 final size:43
Alignment explanation
Indices: 45202096--45202236 Score: 139
Period size: 42 Copynumber: 3.3 Consensus size: 43
45202086 ATCCTAGGCA
*
45202096 TGGTCTTACATGT-AATCAAATATAGATGCCAATGTCCCAGACAG
1 TGGTCTTACATGTAAATCAAA-ATCGATGCCAATGTCCCAGA-AG
** * *
45202140 -GGTCTTACA-CCAAATC-ATATACGATTCCAATGTCCCAGACA-
1 TGGTCTTACATGTAAATCAAAAT-CGATGCCAATGTCCCAGA-AG
* *
45202181 TGGTCTTACATGTAAATCACAAATCGATGCCAACGTCCCAGATG
1 TGGTCTTACATGTAAATCA-AAATCGATGCCAATGTCCCAGAAG
45202225 TGGTCTTACATG
1 TGGTCTTACATG
45202237 ATAACACCTA
Statistics
Matches: 79, Mismatches: 11, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
41 2 0.03
42 28 0.35
43 18 0.23
44 28 0.35
45 3 0.04
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TGGTCTTACATGTAAATCAAAATCGATGCCAATGTCCCAGAAG
Found at i:45209009 original size:6 final size:6
Alignment explanation
Indices: 45208998--45209175 Score: 132
Period size: 6 Copynumber: 28.8 Consensus size: 6
45208988 TATCATAACT
* * * *
45208998 AGAATC AGAATC AGAATC AAAATC AG-GTGAC AGAATC AAAATC AGAACC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
45209047 AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATC
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * *
45209097 AGAATC AGAACC AGAATC AGAATT AGGTAAT- AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
45209146 AGGTAA-C AGAATC AGAATT AGAATG AGAAT
1 A-G-AATC AGAATC AGAATC AGAATC AGAAT
45209176 GCAATCCCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 30
0.74 0.10 0.16
Matches are distributed among these distances:
5 10 0.07
6 107 0.78
7 13 0.09
8 8 0.06
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:45209042 original size:37 final size:37
Alignment explanation
Indices: 45209000--45209085 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
45208990 TCATAACTAG
*
45209000 AATCAGAATCAGAATCAAAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAAAATCAGGTAACAGAATCAA
* * * *
45209037 AATCAGAACCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAGAATCAGAATCAAAATCAGGTAACAGAATCAA
*
45209074 AATCAGTATCAG
1 AATCAGAATCAG
45209086 GTAACAGAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.17
Consensus pattern (37 bp):
AATCAGAATCAGAATCAAAATCAGGTAACAGAATCAA
Found at i:45209106 original size:37 final size:37
Alignment explanation
Indices: 45209065--45209160 Score: 122
Period size: 37 Copynumber: 2.6 Consensus size: 37
45209055 AATTAGGTAA
*
45209065 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAAT
* * *
45209102 CAGAACCAGAATCAGAATTAGGTAATAGAATCAGAAT
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAAT
*
45209139 CAGTATCAGGTAA-CAGAATCAG
1 CAGAATCA-G-AATCAGAATCAG
45209161 AATTAGAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
37 39 0.78
38 9 0.18
39 2 0.04
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.19
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAAT
Found at i:45209136 original size:25 final size:25
Alignment explanation
Indices: 45209003--45209169 Score: 116
Period size: 25 Copynumber: 6.7 Consensus size: 25
45208993 TAACTAGAAT
* *
45209003 CAGAATCAGAATCAAAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
45209028 CAGAATCAAAATCAGAACCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
*
45209051 TCAGAATTAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
*
45209076 TCAGTATCAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
* *
45209101 TCAGAACCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
* *
45209127 TAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
45209152 CAGAATCAGAATTAGAAT
1 CAGAATCAGAATCAGAAT
45209170 GAGAATGCAA
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
23 3 0.03
24 16 0.14
25 94 0.80
26 4 0.03
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:45209160 original size:19 final size:20
Alignment explanation
Indices: 45209009--45209141 Score: 109
Period size: 19 Copynumber: 6.8 Consensus size: 20
45208999 GAATCAGAAT
* *
45209009 CAGAATCAAAATCAGGTGA-
1 CAGAATCAGAATCAGGTAAC
*
45209028 CAGAATCAAAATCA-G-AAC
1 CAGAATCAGAATCAGGTAAC
*
45209046 CAGAATCAGAATTAGGTAAC
1 CAGAATCAGAATCAGGTAAC
*
45209066 AGAATCAGAATCAGTATCAGGTAA-
1 -----CAGAATCAGAATCAGGTAAC
45209090 CAGAATCAGAATCA-G-AAC
1 CAGAATCAGAATCAGGTAAC
*
45209108 CAGAATCAGAATTAGGTAA-
1 CAGAATCAGAATCAGGTAAC
*
45209127 TAGAATCAGAATCAG
1 CAGAATCAGAATCAG
45209142 TATCAGGTAA
Statistics
Matches: 94, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
17 3 0.03
18 27 0.29
19 42 0.45
20 5 0.05
25 17 0.18
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (20 bp):
CAGAATCAGAATCAGGTAAC
Found at i:45209175 original size:62 final size:62
Alignment explanation
Indices: 45209003--45209168 Score: 278
Period size: 62 Copynumber: 2.7 Consensus size: 62
45208993 TAACTAGAAT
** * *
45209003 CAGAATCAGAATCAAAATCAGGTGACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
45209065 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
* *
45209127 TAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATTAGAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
45209169 TGAGAATGCA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 98 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
Found at i:45209330 original size:27 final size:26
Alignment explanation
Indices: 45209288--45209339 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
45209278 GCGAGGCTGC
*
45209288 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
45209314 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
45209340 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45209641 original size:27 final size:27
Alignment explanation
Indices: 45209602--45209911 Score: 326
Period size: 27 Copynumber: 11.6 Consensus size: 27
45209592 TACCCCATAA
* * *
45209602 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
*
45209629 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
*
45209656 GGTATTTCGGTAATTCTACCCTATC-GG
1 GGTATTTCAGTAATTCTACCCTA-CAGG
* *
45209683 GGTATTGC-GATAATTCTACCCTACAAG
1 GGTATTTCAG-TAATTCTACCCTACAGG
* * *
45209710 GGTATTCCGGTAATTCTACCCTACATG
1 GGTATTTCAGTAATTCTACCCTACAGG
45209737 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
* *
45209764 GGTGTTTCGGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
* *
45209791 GGTA-TTCGGTAATTCTACCTTACTA-G
1 GGTATTTCAGTAATTCTACCCTAC-AGG
* *
45209817 GGTATTTTAGTAATTCTACCCTACAAG
1 GGTATTTCAGTAATTCTACCCTACAGG
* * **
45209844 GGTATTTTAGTAATTTTA-CAAACTAGG
1 GGTATTTCAGTAATTCTACCCTAC-AGG
* ** *
45209871 GGTGTTTTGGTAATT-TACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
45209897 GGTATTTCAGTAATT
1 GGTATTTCAGTAATT
45209912 TCACAATCGA
Statistics
Matches: 242, Mismatches: 32, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
26 46 0.19
27 194 0.80
28 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTACAGG
Found at i:45209666 original size:54 final size:54
Alignment explanation
Indices: 45209602--45209911 Score: 362
Period size: 54 Copynumber: 5.8 Consensus size: 54
45209592 TACCCCATAA
* * *
45209602 GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGG
* *
45209656 GGTATTTCGGTAATTCTACCCTATC-GGGGTATTGC-GATAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTA-CAGGGGTATTTCAG-TAATTCTACCCTACAGG
* *
45209710 GGTATTCCGGTAATTCTACCCTACATGGGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGG
* * *
45209764 GGTGTTTCGGTAATTCTACCCTACAGGGGTA-TTCGGTAATTCTACCTTACTA-G
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC-AGG
** * * * **
45209817 GGTATTTTAGTAATTCTACCCTACAAGGGTATTTTAGTAATTTTA-CAAACTAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC-AGG
* * *
45209871 GGTGTTTTGGTAATT-TACCCTATAGGGGTATTTCAGTAATT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATT
45209912 TCACAATCGA
Statistics
Matches: 221, Mismatches: 28, Indels: 15
0.84 0.11 0.06
Matches are distributed among these distances:
53 75 0.34
54 144 0.65
55 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (54 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGG
Found at i:45209946 original size:27 final size:27
Alignment explanation
Indices: 45209916--45210412 Score: 330
Period size: 27 Copynumber: 18.4 Consensus size: 27
45209906 GTAATTTCAC
**
45209916 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* *
45209943 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* *
45209970 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*** *
45209997 AATCGAGGGTACTTTGGTAATTTT-TA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* ** **
45210023 CCAGTCGAGGGT-ATTTCAGTAATTTTACA
1 --AATCGAGGGTAAAAT-AGTAATTTTGTA
*** **
45210052 AATC-AGGGGTATTTTAGTAATTTTACA
1 AATCGA-GGGTAAAATAGTAATTTTGTA
*** *
45210079 AATC-AGGGGTATTTTAGTAATTTTCTA
1 AATCGA-GGGTAAAATAGTAATTTTGTA
* * * *
45210106 AATTGAGGGTAAAATTGTAATTCTCTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* *
45210133 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* ** *
45210160 AATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
45210187 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*
45210214 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
** * **
45210241 AATCGAGGGT-ACTTTGATAATTTTACA
1 AATCGAGGGTAAAATAG-TAATTTTGTA
** ** * *
45210268 TGTCGAGGGT-ATTTCAATAATTTTGCA
1 AATCGAGGGTAAAAT-AGTAATTTTGTA
* ** *
45210295 AA-CTAAGGGT-ATTTCAGTAA-TTT-CA
1 AATC-GAGGGTAAAAT-AGTAATTTTGTA
*
45210320 CAATCGAGGGTAAAACAGTAATTTTGTA
1 -AATCGAGGGTAAAATAGTAATTTTGTA
* * *
45210348 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*
45210375 AATCGAGGGTAAAATAGTAATTTTATA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*
45210402 AACCGAGGGTA
1 AATCGAGGGTA
45210413 CTTTGGAAAT
Statistics
Matches: 390, Mismatches: 65, Indels: 30
0.80 0.13 0.06
Matches are distributed among these distances:
25 2 0.01
26 22 0.06
27 343 0.88
28 22 0.06
29 1 0.00
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTTTGTA
Found at i:45210016 original size:81 final size:81
Alignment explanation
Indices: 45209931--45210425 Score: 403
Period size: 81 Copynumber: 6.1 Consensus size: 81
45209921 AGGGTAAAAC
* *
45209931 GGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTAT
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTAT
45209996 AAATCGAGGGTACTTT
66 AAATCGAGGGTACTTT
* ** * ** ***
45210012 GGTAATTTT-TACCAGTCGAGGGT-ATTTCAGTAATTTTACAAATC-AGGGGTATTTTAGTAATT
1 GGTAATTTTGTA--AATCGAGGGTAAAAT-AGTAATTCTGTAAATCGA-GGGTAAAATAGTAATT
* *
45210074 TTACAAATC-AGGGGTATTTT
62 TTATAAATCGA-GGGTACTTT
* * * * * *
45210094 AGTAATTTTCTAAATTGAGGGTAAAATTGTAATTCTCTAAATCGAGGGTAAAATGGTAATTTTAT
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTAT
****
45210159 AAATCGAGGGTAGAAC
66 AAATCGAGGGTACTTT
* * * *
45210175 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGT
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTAT
45210240 AAATCGAGGGTACTTT
66 AAATCGAGGGTACTTT
* ** ** ** * * * * **
45210256 GATAATTTTACATGTCGAGGGT-ATTTCAATAATTTTGCAAA-CTAAGGGT-ATTTCAGTAATTT
1 GGTAATTTTGTAAATCGAGGGTAAAAT-AGTAATTCTGTAAATC-GAGGGTAAAAT-AGTAATTT
* * ****
45210318 CA-CAATCGAGGGTAAAAC
63 TATAAATCGAGGGTACTTT
* * *
45210336 AGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTAT
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTAT
*
45210401 AAACCGAGGGTACTTT
66 AAATCGAGGGTACTTT
*
45210417 GGAAATTTT
1 GGTAATTTT
45210426 ACAACTGAGG
Statistics
Matches: 309, Mismatches: 89, Indels: 32
0.72 0.21 0.07
Matches are distributed among these distances:
80 58 0.19
81 188 0.61
82 61 0.20
83 2 0.01
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (81 bp):
GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTAT
AAATCGAGGGTACTTT
Found at i:45210377 original size:161 final size:160
Alignment explanation
Indices: 45210160--45210460 Score: 442
Period size: 161 Copynumber: 1.9 Consensus size: 160
45210150 TAATTTTATA
* * * * *
45210160 AATCGAGGGTAGAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
* * * ** *
45210225 AAATGGTAATTTTGTAAATCGAGGGTACTTT-GATAATTTTACATGTCGAGGGTATTTCAATAAT
66 AAATAGTAATTTTATAAACCGAGGGTACTTTGGA-AATTTTACAACT-GAGGATATTTCAATAAT
*
45210289 TTTGCAAACTAAGGGTATTTCAGTAATTTCAC
129 TTGGCAAACTAAGGGTATTTCAGTAATTTCAC
*
45210321 AATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
*
45210386 AAATAGTAATTTTATAAACCGAGGGTACTTTGGAAATTTTACAACTGAGGATATTTCAGTAATTT
66 AAATAGTAATTTTATAAACCGAGGGTACTTTGGAAATTTTACAACTGAGGATATTTCAATAATTT
*
45210451 GGTAAACTAA
131 GGCAAACTAA
45210461 AGTATTCTAA
Statistics
Matches: 124, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
160 25 0.20
161 97 0.78
162 2 0.02
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (160 bp):
AATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
AAATAGTAATTTTATAAACCGAGGGTACTTTGGAAATTTTACAACTGAGGATATTTCAATAATTT
GGCAAACTAAGGGTATTTCAGTAATTTCAC
Found at i:45212422 original size:6 final size:6
Alignment explanation
Indices: 45212411--45212448 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
45212401 TATCATAACT
*
45212411 AGAATC AGAATC AGAATC AGAATC AGAATT AGAATC AG
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AG
45212449 GTGACAGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:45214252 original size:40 final size:40
Alignment explanation
Indices: 45214156--45214334 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
45214146 CGAATGGTGT
* * * *
45214156 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
45214197 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
45214237 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
45214277 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
45214317 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
45214335 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 89 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:45214295 original size:80 final size:80
Alignment explanation
Indices: 45214156--45214348 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
45214146 CGAATGGTGT
* * * *
45214156 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
45214221 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
45214237 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
45214301 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
45214317 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
45214349 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 68 0.72
81 25 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:45214355 original size:40 final size:40
Alignment explanation
Indices: 45214277--45214360 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
45214267 GTTATTAAAT
* * *
45214277 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
45214317 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
45214357 CCGG
1 CCGG
45214361 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:45224838 original size:24 final size:24
Alignment explanation
Indices: 45224788--45224841 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
45224778 AATCGAATTT
*
45224788 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
45224812 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
45224836 GCACAC
1 GCACAC
45224842 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:45231529 original size:15 final size:15
Alignment explanation
Indices: 45231492--45231529 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
45231482 CAAGAAACCA
45231492 AATAAAG-GAATCCAG
1 AATAAAGAG-ATCCAG
45231507 AATAAAGAGATCCAG
1 AATAAAGAGATCCAG
*
45231522 GATAAAGA
1 AATAAAGA
45231530 AACCCAAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 20 0.95
16 1 0.05
ACGTcount: A:0.55, C:0.11, G:0.21, T:0.13
Consensus pattern (15 bp):
AATAAAGAGATCCAG
Found at i:45231540 original size:15 final size:15
Alignment explanation
Indices: 45231483--45231540 Score: 50
Period size: 15 Copynumber: 4.0 Consensus size: 15
45231473 CAAAGATAAC
45231483 AAGAAA-CCAA-ATA
1 AAGAAATCCAAGATA
*
45231496 AAGGAATCC-AGAATA
1 AAGAAATCCAAG-ATA
* *
45231511 AAGAGATCCAGGATA
1 AAGAAATCCAAGATA
*
45231526 AAGAAACCCAAGATA
1 AAGAAATCCAAGATA
45231541 CGATACTATG
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
13 6 0.18
14 2 0.06
15 25 0.74
16 1 0.03
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:45236338 original size:29 final size:29
Alignment explanation
Indices: 45236296--45236355 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
45236286 TTCACATGCG
* * *
45236296 AAGCCTCGTCCAACTTTCGCTTATTTGCT
1 AAGCCTCATCCAACTTCCACTTATTTGCT
45236325 AAGCCTCATCCAACTTCCACTTATTTGCT
1 AAGCCTCATCCAACTTCCACTTATTTGCT
45236354 AA
1 AA
45236356 AAGCTCCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (29 bp):
AAGCCTCATCCAACTTCCACTTATTTGCT
Found at i:45239910 original size:2 final size:2
Alignment explanation
Indices: 45239903--45239934 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
45239893 CACATTCGGC
45239903 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45239935 ATGTATGCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45240518 original size:28 final size:28
Alignment explanation
Indices: 45240486--45240554 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
45240476 AATGAGATTG
*
45240486 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
45240514 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
45240542 GCACTAAGTGTGC
1 GCACTAAGTGTGC
45240555 AGACTTACTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 36 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:45243131 original size:18 final size:19
Alignment explanation
Indices: 45243096--45243131 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
45243086 TTGCAAACCA
45243096 TGTGAAGAACCCTAATGAT
1 TGTGAAGAACCCTAATGAT
*
45243115 TGTGAAG-ACCCTGATGA
1 TGTGAAGAACCCTAATGA
45243132 CCTCTATGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (19 bp):
TGTGAAGAACCCTAATGAT
Found at i:45243300 original size:21 final size:21
Alignment explanation
Indices: 45243259--45243300 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
45243249 GAGTGTTGTA
*
45243259 TTAAAGTTTGGTCTGGTAATT
1 TTAAAGTTTGGTCTAGTAATT
*
45243280 TTAAGGTTTGGT-TAGTCAATT
1 TTAAAGTTTGGTCTAGT-AATT
45243301 AAAGTATAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.48
Consensus pattern (21 bp):
TTAAAGTTTGGTCTAGTAATT
Found at i:45247540 original size:29 final size:29
Alignment explanation
Indices: 45247505--45247574 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
45247495 ATCGACAAAT
*
45247505 GAAAAGGGATAGCTTTGGGTATCGAATAC
1 GAAAAGGGATAGCTTTGGCTATCGAATAC
* * * *
45247534 GGAAAGGGATAGCTTTGGCTATTGATTAT
1 GAAAAGGGATAGCTTTGGCTATCGAATAC
45247563 GAAAAGGGATAG
1 GAAAAGGGATAG
45247575 TGACGACCAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.34, C:0.07, G:0.33, T:0.26
Consensus pattern (29 bp):
GAAAAGGGATAGCTTTGGCTATCGAATAC
Found at i:45247638 original size:59 final size:59
Alignment explanation
Indices: 45247536--45247661 Score: 184
Period size: 59 Copynumber: 2.1 Consensus size: 59
45247526 TCGAATACGG
* **
45247536 AAAGGGATAGCTTTGGCTATTGATTATGAAAAGGGATAGTGACGACCATC-AACAATGA
1 AAAGGGATAGCTTCGGCTATAAATTATGAAAAGGGATAGTGACGACCATCGAACAATGA
*
45247594 AAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGAT-GTTGACGACCATCGAATAATGA
1 AAAGGGATAGCTTCGGCTAT-AAATTATGAAAAGGGATAG-TGACGACCATCGAACAATGA
45247654 AAAGGGAT
1 AAAGGGAT
45247662 GGTGACGACC
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
58 20 0.33
59 26 0.43
60 15 0.25
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.23
Consensus pattern (59 bp):
AAAGGGATAGCTTCGGCTATAAATTATGAAAAGGGATAGTGACGACCATCGAACAATGA
Found at i:45247654 original size:30 final size:31
Alignment explanation
Indices: 45247561--45247686 Score: 138
Period size: 30 Copynumber: 4.2 Consensus size: 31
45247551 GCTATTGATT
*
45247561 ATGAAAAGGGATAG-TGACGACCATC-AACA
1 ATGAAAAGGGATAGTTGACGACCATCAAATA
* * *
45247590 ATGAAAAGGGATAGCTT--CGGCTATCAAATT
1 ATGAAAAGGGATAG-TTGACGACCATCAAATA
*
45247620 ATGAAAAGGGAT-GTTGACGACCATCGAATA
1 ATGAAAAGGGATAGTTGACGACCATCAAATA
* *
45247650 ATGAAAAGGGAT-GGTGACGACCATCAAATT
1 ATGAAAAGGGATAGTTGACGACCATCAAATA
45247680 ATGAAAA
1 ATGAAAA
45247687 AGGGGTACCT
Statistics
Matches: 81, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
28 2 0.02
29 21 0.26
30 57 0.70
31 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (31 bp):
ATGAAAAGGGATAGTTGACGACCATCAAATA
Found at i:45247682 original size:60 final size:59
Alignment explanation
Indices: 45247558--45247686 Score: 172
Period size: 60 Copynumber: 2.2 Consensus size: 59
45247548 TTGGCTATTG
* * *
45247558 ATTATGAAAAGGGATAGTGACGACCATCAACAATGAAAAGGGATAGCTTCGGCTATCAA
1 ATTATGAAAAGGGATAGTGACGACCATCAACAATGAAAAGGGATAGCTACGACCATCAA
* *
45247617 ATTATGAAAAGGGAT-GTTGACGACCATCGAATAATGAAAAGGGAT-GGTGACGACCATCAA
1 ATTATGAAAAGGGATAG-TGACGACCATC-AACAATGAAAAGGGATAGCT-ACGACCATCAA
45247677 ATTATGAAAA
1 ATTATGAAAA
45247687 AGGGGTACCT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
58 1 0.02
59 28 0.45
60 33 0.53
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (59 bp):
ATTATGAAAAGGGATAGTGACGACCATCAACAATGAAAAGGGATAGCTACGACCATCAA
Found at i:45249053 original size:44 final size:42
Alignment explanation
Indices: 45248990--45249137 Score: 167
Period size: 42 Copynumber: 3.5 Consensus size: 42
45248980 ATGTGTTTTT
* *
45248990 GTGTAAGATCACATCTGGGACGTTGGCATCGACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGA-TT-TGATTTAC
*
45249034 GTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTT-C
1 GTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGATTTAC
**
45249076 GTGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGA-TTAC
1 GTGTAAGACCACGTCTGGGAC-GTTGGCATCG--ATTTGATTTAC
*
45249119 ATGTAAGACCACGTCTGGG
1 GTGTAAGACCACGTCTGGG
45249138 TTATCAGCAT
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
42 30 0.33
43 30 0.33
44 30 0.33
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATTTAC
Found at i:45249092 original size:42 final size:42
Alignment explanation
Indices: 45248990--45249137 Score: 181
Period size: 43 Copynumber: 3.5 Consensus size: 42
45248980 ATGTGTTTTT
* * *
45248990 GTGTAAGATCACATCTGGGACGTTGGCATCG-ACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGATTT-C
45249034 GTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTTC
** * *
45249076 GTGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCG-TATTTGATTTC
*
45249119 ATGTAAGACCACGTCTGGG
1 GTGTAAGACCACGTCTGGG
45249138 TTATCAGCAT
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
42 29 0.32
43 32 0.35
44 30 0.33
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTTC
Found at i:45257362 original size:31 final size:31
Alignment explanation
Indices: 45257327--45257390 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
45257317 TTTTGAATGG
*
45257327 GTGCAGTTATGAGACTGCACATAAATGTTTA
1 GTGCAGTTAGGAGACTGCACATAAATGTTTA
*
45257358 GTGCAGTTAGGAGACTTCACATAAATGTTTA
1 GTGCAGTTAGGAGACTGCACATAAATGTTTA
45257389 GT
1 GT
45257391 CGTGCAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.33
Consensus pattern (31 bp):
GTGCAGTTAGGAGACTGCACATAAATGTTTA
Found at i:45258877 original size:27 final size:27
Alignment explanation
Indices: 45258849--45258982 Score: 178
Period size: 27 Copynumber: 5.0 Consensus size: 27
45258839 GAATGATCGA
* * *
45258849 AATACCCCCATAGGGTAAAATGAATGA
1 AATACCCCTATAGGGTAAAATGACTGT
45258876 AATACCCCTATAGGGTAAAATGACTGT
1 AATACCCCTATAGGGTAAAATGACTGT
* *
45258903 GATACCCCTATAGGGTAAAATTACTGT
1 AATACCCCTATAGGGTAAAATGACTGT
* * *
45258930 AATACCCTTGTAGGGTCAAATGACTGT
1 AATACCCCTATAGGGTAAAATGACTGT
* *
45258957 AATACCCCTATAAGGCAAAATGACTG
1 AATACCCCTATAGGGTAAAATGACTG
45258983 ATTTGCCTAC
Statistics
Matches: 92, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACTGT
Found at i:45259425 original size:34 final size:33
Alignment explanation
Indices: 45259352--45259432 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
45259342 TTGATTCTAT
*
45259352 AATGGGCTTAGGCCCCATTGATACTGTTACTGA
1 AATGGGCTTAGGCCCCACTGATACTGTTACTGA
* * *
45259385 AATGGGCTTAGGCCCACACTGTTTCTGATT-TTGA
1 AATGGGCTTAGGCCC-CACTGATACTG-TTACTGA
45259419 AATGGGC-TAGGCCC
1 AATGGGCTTAGGCCC
45259433 TAACTGAAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
33 22 0.52
34 18 0.43
35 2 0.05
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (33 bp):
AATGGGCTTAGGCCCCACTGATACTGTTACTGA
Found at i:45264468 original size:124 final size:119
Alignment explanation
Indices: 45264251--45264470 Score: 280
Period size: 124 Copynumber: 1.8 Consensus size: 119
45264241 GAATTATGTG
* * * * *
45264251 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGGAGTATTTGAATGATACCCGGGCTAA
1 AAATGAAATATGAATGTCTAATGATTATTGATTTATGTGGAGCAATTGAATGATACCCGGGCTAA
* **
45264316 GTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
* *
45264370 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGAT-T-TATGTG---GAGCAATTGAATGATACCCGG
*
45264435 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
61 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
45264471 CCAGGTTAAG
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
119 29 0.35
120 1 0.01
121 5 0.06
123 3 0.04
124 46 0.55
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (119 bp):
AAATGAAATATGAATGTCTAATGATTATTGATTTATGTGGAGCAATTGAATGATACCCGGGCTAA
GTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:45264592 original size:40 final size:40
Alignment explanation
Indices: 45264465--45264594 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
45264455 TTGCTGGAAA
* * * *
45264465 TTATATCCAGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
45264505 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
45264545 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
45264585 TTATATCCGG
1 TTATATCCGG
45264595 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:45271666 original size:124 final size:124
Alignment explanation
Indices: 45271444--45271668 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
45271434 GAATTATGTG
* * * * * * *
45271444 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
45271509 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
45271568 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
45271633 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
45271669 CCAGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:45271790 original size:40 final size:40
Alignment explanation
Indices: 45271663--45271792 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
45271653 TTGCTGGAAA
* * * *
45271663 TTATATCCAGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
45271703 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
45271743 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
45271783 TTATATCCGG
1 TTATATCCGG
45271793 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:45287072 original size:29 final size:29
Alignment explanation
Indices: 45287037--45287110 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
45287027 GTTGTGAGAT
* *
45287037 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
45287066 TGGCACTAAGTGTGCGAGTTTAAAGTACG
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
45287095 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45287111 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:45292041 original size:5 final size:6
Alignment explanation
Indices: 45292028--45292068 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
45292018 ATAATTTAAT
45292028 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
45292069 ATATATAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:45292062 original size:21 final size:22
Alignment explanation
Indices: 45292005--45292062 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 22
45291995 CAACCCAATC
*
45292005 ATAAAAATTACAAATAATTTAATAA
1 ATAAAAA-TA-AAA-AATCTAATAA
45292030 ATAAAAAT-AAAAATCTAA-AA
1 ATAAAAATAAAAAATCTAATAA
45292050 ATAAAAATAAAAA
1 ATAAAAATAAAAA
45292063 TAAAAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 10 0.32
21 10 0.32
22 3 0.10
24 1 0.03
25 7 0.23
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAAAATAAAAAATCTAATAA
Found at i:45292069 original size:20 final size:20
Alignment explanation
Indices: 45292028--45292069 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
45292018 ATAATTTAAT
**
45292028 AAATAAAAATAAAAATCTAA
1 AAATAAAAATAAAAATAAAA
45292048 AAATAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
45292068 AA
1 AA
45292070 TATATAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:45292102 original size:9 final size:9
Alignment explanation
Indices: 45292088--45292164 Score: 77
Period size: 9 Copynumber: 8.6 Consensus size: 9
45292078 TTTATACAAA
45292088 TAATTCGGT
1 TAATTCGGT
45292097 TAATTCGGT
1 TAATTCGGT
*
45292106 TAATTTGAG-
1 TAATTCG-GT
*
45292115 TAATTCGGG
1 TAATTCGGT
45292124 TAATTCGAG-
1 TAATTCG-GT
**
45292133 TAATTCAAT
1 TAATTCGGT
*
45292142 TAATTCAGT
1 TAATTCGGT
45292151 TAATTCGGT
1 TAATTCGGT
45292160 TAATT
1 TAATT
45292165 TTATACTTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
8 1 0.02
9 55 0.95
10 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (9 bp):
TAATTCGGT
Found at i:45292127 original size:27 final size:27
Alignment explanation
Indices: 45292088--45292165 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
45292078 TTTATACAAA
*
45292088 TAATTCGGTTAATTCGGTTAATTTGAG
1 TAATTCGGTTAATTCGGTTAATTTAAG
* * *
45292115 TAATTCGGGTAATTCGAG-TAATTCAAT
1 TAATTCGGTTAATTCG-GTTAATTTAAG
*
45292142 TAATTCAGTTAATTCGGTTAATTT
1 TAATTCGGTTAATTCGGTTAATTT
45292166 TATACTTATT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (27 bp):
TAATTCGGTTAATTCGGTTAATTTAAG
Found at i:45292533 original size:42 final size:43
Alignment explanation
Indices: 45292440--45292533 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 43
45292430 TAAGACGACG
* * * * *
45292440 TCTGGCACGTTGGCATCGATTTGTGATTTACGTGTAAGCCATG
1 TCTGGGACATTGGCATCGATATATGATTTACGTGTAAGCCATA
* *
45292483 TCTAGGACATTGGCATCG-TATATGATTT-CGTGTAAGACCCTA
1 TCTGGGACATTGGCATCGATATATGATTTACGTGTAAG-CCATA
45292525 TCTGGGACA
1 TCTGGGACA
45292534 GTGGGATCAA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
41 8 0.19
42 19 0.45
43 15 0.36
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (43 bp):
TCTGGGACATTGGCATCGATATATGATTTACGTGTAAGCCATA
Found at i:45293921 original size:27 final size:27
Alignment explanation
Indices: 45293891--45294388 Score: 328
Period size: 27 Copynumber: 18.4 Consensus size: 27
45293881 ATTTCCAAAG
* *
45293891 TACCCTCGGTTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
45293918 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
45293945 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* ***
45293972 TACCCTCGATTGT--GAAATTACTAAAA
1 TACCCTCGATT-TACAAAATTACTATTT
* * **
45293998 TACCCTC-AGTTTGCAAAATTATTGA-AA
1 TACCCTCGA-TTTACAAAATTACT-ATTT
** ** ***
45294025 TACCCTCGACATGTAAAATTA-TCAAAG
1 TACCCTCGATTTACAAAATTACT-ATTT
* *
45294052 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
45294079 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* ** *
45294106 TACCCTCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAAAATTACTATTT
* *
45294133 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
45294160 TACCCTTGATTTAGAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* ***
45294187 TACCCTCGATTTAGAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTATTT
* ** ***
45294214 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTTACAAAATTACTATTT
* ** **
45294241 TACCCCCTGATTTGTAAAATTACTGA-AA
1 TACCCTC-GATTTACAAAATTACT-ATTT
* ***
45294269 TACCCTCGATTGGTA-AAAATTACCAAAG
1 TACCCTCGATT--TACAAAATTACTATTT
* *
45294297 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
45294324 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
45294351 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
45294378 TACCCTCGATT
1 TACCCTCGATT
45294389 GTGAAATTAC
Statistics
Matches: 384, Mismatches: 71, Indels: 32
0.79 0.15 0.07
Matches are distributed among these distances:
25 2 0.01
26 22 0.06
27 311 0.81
28 46 0.12
29 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:45294140 original size:161 final size:160
Alignment explanation
Indices: 45293853--45294143 Score: 440
Period size: 161 Copynumber: 1.8 Consensus size: 160
45293843 TTAGTTTACC
* ** * * *
45293853 AAATTACTGAAATATCCTCAGTTGTAAAATTTCCAAAGTACCCTCGGTTTATAAAATTACTATTT
1 AAATTACTGAAATACCCTCACATGTAAAATTTCCAAAGTACCCTCGATTTACAAAATTACCATTT
* * * *
45293918 TACCCTCGATTTACAGAATTATTATTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATT
66 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACCGTTCTACCCTCGATT
45293983 GTGAAATTACTAAAATACCCTCAGTTTGCA
131 GTGAAATTACTAAAATACCCTCAGTTTGCA
* *
45294013 AAATTATTGAAATACCCTCGACATGTAAAATTAT-CAAAGTACCCTTGATTTACAAAATTACCAT
1 AAATTACTGAAATACCCTC-ACATGTAAAATT-TCCAAAGTACCCTCGATTTACAAAATTACCAT
*
45294077 TTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTCTACCCTCGA
64 TTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACCGTTCTACCCTCGA
45294142 TT
129 TT
45294144 TATAAAATTA
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
160 17 0.15
161 98 0.84
162 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (160 bp):
AAATTACTGAAATACCCTCACATGTAAAATTTCCAAAGTACCCTCGATTTACAAAATTACCATTT
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACCGTTCTACCCTCGATT
GTGAAATTACTAAAATACCCTCAGTTTGCA
Found at i:45294256 original size:28 final size:27
Alignment explanation
Indices: 45294187--45294320 Score: 128
Period size: 28 Copynumber: 4.9 Consensus size: 27
45294177 ATTACCATTT
*
45294187 TACCCTCGATTTAG-AAAATTACTAAAA
1 TACCCCCGATTT-GTAAAATTACTAAAA
*
45294214 TA-CCCCTAGTTTGTAAAATTACTAAAA
1 TACCCCCGA-TTTGTAAAATTACTAAAA
*
45294241 TACCCCCTGATTTGTAAAATTACTGAAA
1 TACCCCC-GATTTGTAAAATTACTAAAA
* * * *
45294269 TACCCTCGATTGGTAAAAATTACCAAAG
1 TACCCCCGATTTGT-AAAATTACTAAAA
* * *
45294297 TACCCTCGATTTATAGAATTACTA
1 TACCCCCGATTTGTAAAATTACTA
45294321 TTTTACCCTC
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
26 5 0.06
27 34 0.38
28 49 0.55
29 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TACCCCCGATTTGTAAAATTACTAAAA
Found at i:45294285 original size:55 final size:55
Alignment explanation
Indices: 45294187--45294320 Score: 146
Period size: 55 Copynumber: 2.4 Consensus size: 55
45294177 ATTACCATTT
* * * * *
45294187 TACCCTCGATTTAGAAAATTACTAAAATACCCCTAGTTTGT-AAAATTACTAAAA
1 TACCCCCGATTTATAAAATTACTAAAATACCCCGAGTTGGTAAAAATTACCAAAA
* * *
45294241 TACCCCCTGATTTGTAAAATTACTGAAATACCCTCGA-TTGGTAAAAATTACCAAAG
1 TACCCCC-GATTTATAAAATTACTAAAATACCC-CGAGTTGGTAAAAATTACCAAAA
* *
45294297 TACCCTCGATTTATAGAATTACTA
1 TACCCCCGATTTATAAAATTACTA
45294321 TTTTACCCTC
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
54 6 0.09
55 40 0.62
56 19 0.29
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (55 bp):
TACCCCCGATTTATAAAATTACTAAAATACCCCGAGTTGGTAAAAATTACCAAAA
Found at i:45294386 original size:81 final size:81
Alignment explanation
Indices: 45293878--45294388 Score: 413
Period size: 81 Copynumber: 6.3 Consensus size: 81
45293868 CCTCAGTTGT
* * * *
45293878 AAAATTTCCAAAGTACCCTCGGTTTATAAAATTACTATTTTACCCTCGATTTACAGAATTATTAT
1 AAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTAT
*
45293943 TTTACCCTTGATTTAC
66 TTTACCCTCGATTTAC
**** * * *** * *
45293959 AAAATTACCGTTTTACCCTCGA-TTGTGAAATTACTAAAATACCCTC-AGTTTGCAAAATTATTG
1 AAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTTTACCCTCGA-TTTACAAAATTACT-
** ** **
45294022 A-AATACCCTCGACATGT
64 ATTTTACCCTCGATTTAC
* * * *
45294039 AAAATTATCAAAGTACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTAT
1 AAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTAT
45294104 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* **** * * * * *
45294120 AGAATTACCGTTCTACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTAGAGAATTACCAT
1 AAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTAT
*
45294185 TTTACCCTCGATTTAG
66 TTTACCCTCGATTTAC
* * * * *** * **
45294201 AAAATTACTAAAATACCC-CTAGTTTGTAAAATTACTAAAATACCCCCTGATTTGTAAAATTACT
1 AAAATTACCAAAGTACCCTCGA-TTTATAAAATTACTATTTTACCCTC-GATTTACAAAATTACT
**
45294265 GA-AATACCCTCGATTGGTA-
64 -ATTTTACCCTCGATT--TAC
* * *
45294284 AAAATTACCAAAGTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGT
1 AAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTAT
*
45294349 TTTACCCTTGATTTAC
66 TTTACCCTCGATTTAC
***
45294365 AAAATTACCATTTTACCCTCGATT
1 AAAATTACCAAAGTACCCTCGATT
45294389 GTGAAATTAC
Statistics
Matches: 324, Mismatches: 93, Indels: 26
0.73 0.21 0.06
Matches are distributed among these distances:
79 1 0.00
80 61 0.19
81 175 0.54
82 47 0.15
83 36 0.11
84 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.36
Consensus pattern (81 bp):
AAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTAT
TTTACCCTCGATTTAC
Found at i:45294423 original size:27 final size:27
Alignment explanation
Indices: 45294393--45294720 Score: 330
Period size: 27 Copynumber: 12.2 Consensus size: 27
45294383 TCGATTGTGA
*
45294393 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** * ** *
45294420 AATTACCAAAACACCCCTAGT-TTGTAA
1 AATTACTGAAATACCCCT-GTAGGGTAG
*
45294447 AATTACT-AAGATACCCTTGTAGGGTAG
1 AATTACTGAA-ATACCCCTGTAGGGTAG
* * *
45294474 AATTACTAAAATA-CCCTAGTAAGATAG
1 AATTACTGAAATACCCCT-GTAGGGTAG
*
45294501 AATTA-TCG-AATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
45294527 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
45294554 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
45294581 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
45294608 AATTA-TCGCAATACCCCTATAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
45294635 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
45294662 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
45294689 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
45294715 AATTAC
1 AATTAC
45294721 CATTTTGCCC
Statistics
Matches: 250, Mismatches: 40, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
26 39 0.16
27 207 0.83
28 4 0.02
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:45294478 original size:107 final size:107
Alignment explanation
Indices: 45294402--45294695 Score: 378
Period size: 107 Copynumber: 2.7 Consensus size: 107
45294392 AAATTACTGA
** *
45294402 AATACCCCTATAGGGTAGAATTACCAAAACACCCCTAGT-TTGTAAAATTACT-AAGATACCCTT
1 AATACCCCTATAGGGTAGAATTACCAAAACACCCCT-GTAGGGTAAAATTACTGAA-ATACCCCT
*
45294465 GTAGGGTAGAATTACTAAAATACCCTAGTAAGATAGAATTATCG
64 GTAGGGTAGAATTACCAAAATACCCTAGTAAGATAGAATTATCG
* * *
45294509 AATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGT
1 AATACCCCTATAGGGTAGAATTACCAAAACACCCCTGTAGGGTAAAATTACTGAAATACCCCTGT
* * *
45294574 AGGGTAGAATTACCGAAATACCCCT-GTAGGGTAGAATTATCG
66 AGGGTAGAATTACCAAAATA-CCCTAGTAAGATAGAATTATCG
* * * * * *
45294616 CAATACCCCTATAAGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTG
1 -AATACCCCTATAGGGTAGAATTACCAAAACACCCCTGTAGGGTAAAATTACTGAAATACCCCTG
*
45294681 TAGGGTGGAATTACC
65 TAGGGTAGAATTACC
45294696 GAGATACCTT
Statistics
Matches: 169, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
106 2 0.01
107 86 0.51
108 81 0.48
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (107 bp):
AATACCCCTATAGGGTAGAATTACCAAAACACCCCTGTAGGGTAAAATTACTGAAATACCCCTGT
AGGGTAGAATTACCAAAATACCCTAGTAAGATAGAATTATCG
Found at i:45295004 original size:27 final size:26
Alignment explanation
Indices: 45294966--45295017 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
45294956 CTCGCTACAA
*
45294966 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
45294993 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
45295018 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:45295145 original size:6 final size:6
Alignment explanation
Indices: 45295136--45295258 Score: 74
Period size: 6 Copynumber: 20.0 Consensus size: 6
45295126 TTGCATTCAC
* * *
45295136 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
45295186 ATTCTA ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
45295235 ATTCT- AGTTTTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATTCTG
45295259 TCTGTAACAC
Statistics
Matches: 94, Mismatches: 12, Indels: 22
0.73 0.09 0.17
Matches are distributed among these distances:
5 8 0.09
6 72 0.77
7 9 0.10
8 5 0.05
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:45295170 original size:19 final size:19
Alignment explanation
Indices: 45295164--45295233 Score: 81
Period size: 19 Copynumber: 3.7 Consensus size: 19
45295154 TTACCTGATA
*
45295164 CTGATTCTGATTCTATTAC
1 CTGATTCTGATTCTGTTAC
* *
45295183 CTAATTCTAATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
45295201 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
45295220 CTGATACTGATTCT
1 CTGATTCTGATTCT
45295234 AATTCTAGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 3 0.07
18 12 0.29
19 25 0.60
20 2 0.05
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:45295195 original size:25 final size:25
Alignment explanation
Indices: 45295136--45295202 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
45295126 TTGCATTCAC
* * *
45295136 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTATTACCTA
*
45295161 ATACTGATTCTGATTCTATTACCTA
1 ATTCTGATTCTGATTCTATTACCTA
* *
45295186 ATTCTAATTCTGGTTCT
1 ATTCTGATTCTGATTCT
45295203 GATTCTGATT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.22, C:0.19, G:0.10, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTATTACCTA
Found at i:45295213 original size:43 final size:41
Alignment explanation
Indices: 45295142--45295259 Score: 114
Period size: 43 Copynumber: 2.7 Consensus size: 41
45295132 TCACATTCTG
*
45295142 ATTCTAATTCTGTTACCTGATACTGATTCTGATT-CT-ATTACCTA
1 ATTCTAATTCTGTT--CTGATTCTGATTCTG-TTACTGA-TA-CTA
*
45295186 ATTCTAATTCTGGTTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTAATTCT-GTTCTGATTCTGATTCTGTTA-CTGATACTA
* *
45295229 ATTCTAATTCTAGTTTTGATTTTGATTCTGT
1 ATTCTAATTCT-GTTCTGATTCTGATTCTGT
45295260 CTGTAACACC
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
42 2 0.03
43 44 0.68
44 15 0.23
45 4 0.06
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (41 bp):
ATTCTAATTCTGTTCTGATTCTGATTCTGTTACTGATACTA
Found at i:45296706 original size:40 final size:39
Alignment explanation
Indices: 45296648--45296784 Score: 125
Period size: 40 Copynumber: 3.4 Consensus size: 39
45296638 GGATATAGCG
* * * *
45296648 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
45296688 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
45296728 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
*
45296768 ACTCGCACAAATGCCTT
1 ACTCGCACAATTGCCTT
45296785 GGCGTGTTGA
Statistics
Matches: 80, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
39 3 0.04
40 73 0.91
41 4 0.05
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:45304774 original size:40 final size:39
Alignment explanation
Indices: 45304716--45304908 Score: 140
Period size: 40 Copynumber: 4.8 Consensus size: 39
45304706 GGATATAGCG
* * * *
45304716 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
45304756 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
45304796 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
* * * *
45304836 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
45304876 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
45304909 ACACCATTCG
Statistics
Matches: 123, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
39 4 0.03
40 90 0.73
41 27 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:45304828 original size:80 final size:80
Alignment explanation
Indices: 45304716--45304908 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
45304706 GGATATAGCG
* * * * * * *
45304716 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
45304781 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
45304796 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
* *
45304861 GACCCGGATTTAGTC
66 GACCCGGATTTAATA
* * *
45304876 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
45304909 ACACCATTCG
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 67 0.71
81 27 0.29
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:45304897 original size:41 final size:39
Alignment explanation
Indices: 45304758--45304909 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
45304748 TTATAGTGAT
* *
45304758 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
45304798 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* *
45304838 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
45304878 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGA
45304910 CACCATTCGA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
40 67 0.71
41 27 0.29
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:45307088 original size:55 final size:56
Alignment explanation
Indices: 45307023--45307137 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
45307013 AGCATGGCTG
* * *
45307023 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
45307079 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
45307134 CCAG
1 CCAG
45307138 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Done.