Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 150 of 410
Found at i:45307134 original size:28 final size:27
Alignment explanation
Indices: 45307048--45307137 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
45307038 GTGACAGAGT
*
45307048 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
45307077 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
45307104 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
45307132 CACCAG
1 CACCAG
45307138 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:45307288 original size:28 final size:28
Alignment explanation
Indices: 45307241--45307305 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
45307231 AAATTAACCC
*
45307241 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
45307269 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
45307297 TAGGGGTAT
1 TAGGGGTAT
45307306 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:45308385 original size:12 final size:13
Alignment explanation
Indices: 45308366--45308398 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
45308356 GGGTTCAGCT
45308366 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
45308379 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
45308391 ATGGAGAA
1 ATGGAGAA
45308399 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:45313741 original size:11 final size:10
Alignment explanation
Indices: 45313722--45313754 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
45313712 GTACAGACAG
45313722 ATAATTCAGA
1 ATAATTCAGA
45313732 ATATATTCAGA
1 ATA-ATTCAGA
45313743 A-AATTCAGA
1 ATAATTCAGA
45313752 ATA
1 ATA
45313755 CTTACAGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 8 0.38
10 5 0.24
11 8 0.38
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (10 bp):
ATAATTCAGA
Found at i:45314884 original size:55 final size:56
Alignment explanation
Indices: 45314819--45314933 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
45314809 AGCATGGCTG
* * *
45314819 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
45314875 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
45314930 CCAG
1 CCAG
45314934 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:45314930 original size:28 final size:27
Alignment explanation
Indices: 45314844--45314933 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
45314834 GTGACAGAGT
*
45314844 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
45314873 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
45314900 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
45314928 CACCAG
1 CACCAG
45314934 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:45315085 original size:27 final size:28
Alignment explanation
Indices: 45315039--45315102 Score: 103
Period size: 27 Copynumber: 2.3 Consensus size: 28
45315029 AAATTAACCC
*
45315039 TAGGGGTATAAAGGTCATTTTGCA-ACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
45315066 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
45315094 TAGGGGTAT
1 TAGGGGTAT
45315103 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 22 0.65
28 12 0.35
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:45316180 original size:12 final size:13
Alignment explanation
Indices: 45316161--45316193 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
45316151 GGGTTCAGCT
45316161 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
45316174 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
45316186 ATGGAGAA
1 ATGGAGAA
45316194 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:45318103 original size:40 final size:40
Alignment explanation
Indices: 45318032--45318148 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
45318022 TGGAAAAAAA
45318032 TATAACCGGGTTAAGT-CCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
45318071 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
45318111 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
45318149 GTTACATCCG
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 16 0.21
40 59 0.79
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:45320149 original size:49 final size:49
Alignment explanation
Indices: 45320082--45320283 Score: 377
Period size: 49 Copynumber: 4.1 Consensus size: 49
45320072 TTTACCACAT
* *
45320082 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
45320131 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
45320180 ATATATATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
45320229 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
45320278 ATATAT
1 ATATAT
45320284 TATTATGTAC
Statistics
Matches: 149, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 149 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:45329120 original size:93 final size:93
Alignment explanation
Indices: 45328977--45329145 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
45328967 AAGATGCCGG
* * *
45328977 CGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATTTTGCGAGACCGATGCCATGTCCCAGAC
1 CGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCGCGAGACCGATG-CATGTCCCAGAC
45329042 AGGTCTTACACTAACACACCACAATCTGA
65 AGGTCTTACACTAACACACCACAATCTGA
* *
45329071 CGCCATGTCCCAGACA-GGTCTTACACTAGCTTGT-ATATCGGGAGGCCGATGCATGTCCCAGAC
1 CGCCATGTCCCAGACATGGTCTTACACTAGCTT-TCATATCGCGAGACCGATGCATGTCCCAGAC
*
45329134 ATGTCTTACACT
65 AGGTCTTACACT
45329146 TGCTTAAATA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
92 23 0.34
93 28 0.41
94 17 0.25
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (93 bp):
CGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCGCGAGACCGATGCATGTCCCAGACA
GGTCTTACACTAACACACCACAATCTGA
Found at i:45329145 original size:48 final size:48
Alignment explanation
Indices: 45329074--45329205 Score: 174
Period size: 48 Copynumber: 2.8 Consensus size: 48
45329064 AATCTGACGC
* **
45329074 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGGGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGGGAGGCCGATG
* ** **
45329122 CATGTCCCAGACATGTCTTACACTTGCTTAAATATCTTGAGGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGGGAGGCCGATG
* *
45329170 CATGTCCCAGACATGTCTTACACTAGCATACATATC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATC
45329206 ACCCATTATC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGGGAGGCCGATG
Found at i:45334485 original size:48 final size:48
Alignment explanation
Indices: 45334304--45334485 Score: 215
Period size: 48 Copynumber: 3.8 Consensus size: 48
45334294 ATGTTGACGC
* * *
45334304 CATGTCCCAGACATGGTCTTACACTGGCTTTCATAT-TGCGAGATCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTACATATCT-CGAGGTCGATG
* ** **
45334353 CTATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGGGAGG-CTGATG
1 C-ATGTCCCAGACATGTCTTACACTAGCTTACATATCTCGAGGTC-GATG
* *
45334402 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTACATATCTCGAGGTCGATG
*
45334450 CATGTCCCAGACATGTCTTACACTAGCATACATATC
1 CATGTCCCAGACATGTCTTACACTAGCTTACATATC
45334486 ACCCATTATC
Statistics
Matches: 113, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
48 73 0.65
49 28 0.25
50 12 0.11
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTACATATCTCGAGGTCGATG
Found at i:45334485 original size:96 final size:98
Alignment explanation
Indices: 45334304--45334485 Score: 271
Period size: 96 Copynumber: 1.9 Consensus size: 98
45334294 ATGTTGACGC
**
45334304 CATGTCCCAGACATGGTCTTACACTGGCTTTCATATTGCGAGATCGATGCTATGTCCCAGACAGG
1 CATGTCCCAGACATGGTCTTACACTGGCTTAAATATTGCGAGATCGATGCTATGTCCCAGACAGG
* **
45334369 TCTTACACTAGCTTGTATATCGGGAGGCTGATG
66 TCTTACACTAGCATACATATCGGGAGGCTGATG
* *
45334402 CATGTCCCAGACAT-GTCTTACACTGGCTTAAATATCT-CGAGGTCGATGC-ATGTCCCAGACAT
1 CATGTCCCAGACATGGTCTTACACTGGCTTAAATAT-TGCGAGATCGATGCTATGTCCCAGACAG
45334464 GTCTTACACTAGCATACATATC
65 GTCTTACACTAGCATACATATC
45334486 ACCCATTATC
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
96 31 0.41
97 30 0.39
98 15 0.20
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (98 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTAAATATTGCGAGATCGATGCTATGTCCCAGACAGG
TCTTACACTAGCATACATATCGGGAGGCTGATG
Found at i:45349300 original size:29 final size:28
Alignment explanation
Indices: 45349212--45349313 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
45349202 TACTCAATCA
* *
45349212 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * *
45349241 CGCACACATAGTGCCATATAGTCCCAA-CT
1 CGCACACTTAGTGCCGTACA-T-TCAAGCT
45349270 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
45349299 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
45349314 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
27 2 0.03
28 6 0.10
29 47 0.81
30 3 0.05
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:45355312 original size:32 final size:32
Alignment explanation
Indices: 45355276--45355339 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
45355266 TCATGGAGAT
*
45355276 ACTTTTAAGAATACTTTATCTCTGACTTGGAA
1 ACTTTCAAGAATACTTTATCTCTGACTTGGAA
45355308 ACTTTCAAGAATACTTTATCTCTGACTTGGAA
1 ACTTTCAAGAATACTTTATCTCTGACTTGGAA
45355340 CTCAATCTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.39
Consensus pattern (32 bp):
ACTTTCAAGAATACTTTATCTCTGACTTGGAA
Found at i:45360798 original size:27 final size:28
Alignment explanation
Indices: 45360742--45360811 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
45360732 AAATTTGTAC
45360742 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
45360770 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
45360797 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45360812 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:45360822 original size:27 final size:27
Alignment explanation
Indices: 45360742--45360823 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
45360732 AAATTTGTAC
* *
45360742 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
45360770 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
45360797 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
45360824 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:45363315 original size:29 final size:29
Alignment explanation
Indices: 45363282--45363355 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
45363272 CCTTCGAGCT
45363282 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
45363311 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
45363340 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
45363356 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:45363316 original size:58 final size:58
Alignment explanation
Indices: 45363223--45363355 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
45363213 ATACTCGATT
* * * * *
45363223 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
45363281 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
45363339 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
45363356 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:45371070 original size:29 final size:29
Alignment explanation
Indices: 45371035--45371109 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
45371025 TACTCGATTT
* *
45371035 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATGCCATTCAAGCC
** * * *
45371064 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCCATTCAAGCC
45371093 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
45371110 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.23, C:0.36, G:0.20, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCCATTCAAGCC
Found at i:45371126 original size:29 final size:29
Alignment explanation
Indices: 45371093--45371164 Score: 121
Period size: 27 Copynumber: 2.6 Consensus size: 29
45371083 CCTTCGAGCT
45371093 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
45371122 TG--CACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
45371149 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
45371165 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
27 26 0.67
29 13 0.33
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:45374331 original size:46 final size:46
Alignment explanation
Indices: 45374278--45374451 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
45374268 ATGTAACCGC
*
45374278 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
45374324 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
45374374 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
45374416 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
45374452 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 26 0.24
46 37 0.34
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:45374444 original size:92 final size:93
Alignment explanation
Indices: 45374286--45374455 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
45374276 GCCCATAAGT
* *
45374286 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45374351 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45374379 GAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45374443 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45374456 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 49 0.66
93 25 0.34
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45380190 original size:59 final size:58
Alignment explanation
Indices: 45380117--45380247 Score: 156
Period size: 59 Copynumber: 2.2 Consensus size: 58
45380107 TTTAAGCCCA
* * * *
45380117 CACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCATG
1 CACACTTAGTGCCATACCCTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCATG
*** **
45380176 CACACTTAGTGCCATATGTTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATG
1 CACACTTAGTGCCATACCCTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATG
45380234 CACACTTAGTGCCA
1 CACACTTAGTGCCA
45380248 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 26 0.42
59 35 0.56
60 1 0.02
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
CACACTTAGTGCCATACCCTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATG
Found at i:45380205 original size:29 final size:29
Alignment explanation
Indices: 45380165--45380247 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
45380155 TGCCGTATTT
*
45380165 TTTCCAGCATGCACACTTAGTGCCATATG
1 TTTCCAGCATGCACACTTAGTGCCATATA
45380194 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
45380223 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
45380248 ATCTCGTCAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:45381447 original size:19 final size:17
Alignment explanation
Indices: 45381405--45381449 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
45381395 GAATAAACAC
*
45381405 TTTTTTTTTCTTTTCTT
1 TTTTTTTTTCTATTCTT
*
45381422 TGTTTTTCTTCATATTCTT
1 T-TTTTTTTTC-TATTCTT
45381441 TTTTTTTTT
1 TTTTTTTTT
45381450 TTTTCATTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 15 0.65
19 7 0.30
ACGTcount: A:0.04, C:0.11, G:0.02, T:0.82
Consensus pattern (17 bp):
TTTTTTTTTCTATTCTT
Found at i:45385466 original size:40 final size:39
Alignment explanation
Indices: 45385402--45385539 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 39
45385392 GAGTCACGTA
*
45385402 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAACCACTAGCACAA-TG
* * *
45385441 CCTTTGGGTCTTAACCCGGATATAACAACTCGCACGAATG
1 CCTTCGGGTCTTAACCCGGATATAACCACTAGCAC-AATG
* * * *
45385481 CCTTCGGGTCTTAGCCCAGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAACCACTAGCA-CAATG
* *
45385521 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
45385540 GTATCATTCA
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 11 0.13
40 68 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
CCTTCGGGTCTTAACCCGGATATAACCACTAGCACAATG
Found at i:45388436 original size:40 final size:39
Alignment explanation
Indices: 45388381--45388637 Score: 304
Period size: 40 Copynumber: 6.5 Consensus size: 39
45388371 CGGATGATAA
* *
45388381 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
45388421 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
45388461 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
*
45388501 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
45388541 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
45388581 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-T
* *
45388620 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
45388638 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 165 0.85
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:45388594 original size:120 final size:119
Alignment explanation
Indices: 45388381--45388611 Score: 349
Period size: 120 Copynumber: 1.9 Consensus size: 119
45388371 CGGATGATAA
* *
45388381 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* * *
45388446 TGTGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
66 TGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCA-TTGAGCGAGTTATTACAT
*
45388501 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCTCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* *
45388564 GGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTGAGCGAGT
64 GGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTGAGCGAGT
45388612 AGCTATATCC
Statistics
Matches: 101, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
119 10 0.10
120 90 0.89
121 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTGAGCGAGTTATTACAT
Found at i:45394822 original size:45 final size:44
Alignment explanation
Indices: 45394719--45394935 Score: 278
Period size: 45 Copynumber: 4.9 Consensus size: 44
45394709 CTGAATTCAT
* * * *
45394719 TCACCGACATT-TCGCCTGCTAGGCTCGAAGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGT-ATC
* *
45394761 TCACCGGCATTATAGCCTGGTAGGCTCGAAAGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGCCCGAATAGTATC
* *
45394806 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATAGTATC
*
45394851 TCACCGGCATTATAGCCTGTTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATAGTATC
*
45394896 TCACCGGCATTATAGCCTGCTAGGCTCAAAGACCCAAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAG-CCCGAATA
45394936 ATACTGTGCA
Statistics
Matches: 155, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
42 10 0.06
43 13 0.08
44 10 0.06
45 121 0.78
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGTATC
Found at i:45395786 original size:47 final size:47
Alignment explanation
Indices: 45395734--45395923 Score: 326
Period size: 47 Copynumber: 4.0 Consensus size: 47
45395724 AAAATTTTCT
* *
45395734 TTAACTAAGTAACTTATCTGGAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
* *
45395781 TTAACTAAGTAACTTATCCGGAAATATTAAGAGAAAATTTAATAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
*
45395828 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAATAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
*
45395875 TTAACTAAGTAACTTATCCGGAAATATTAAGACCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
45395922 TT
1 TT
45395924 TAAATTCAAC
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 136 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:45402531 original size:45 final size:44
Alignment explanation
Indices: 45402437--45402595 Score: 214
Period size: 45 Copynumber: 3.6 Consensus size: 44
45402427 CTGGTATTTC
* * *
45402437 GCCTGCTAGGCTCGAAGCCCG-ATA-TCATTTCACTGGCATTATA
1 GCCTGCTAGGCTCAAAGCCCGAATAGT-ATCTCACCGGCATTATA
45402480 GCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTC-AAAGCCCGAATAGTATCTCACCGGCATTATA
** *
45402525 GCCTGCTAGGCTCAATAGCCAAAATAGTATCTCATCGGCATTATA
1 GCCTGCTAGGCTCAA-AGCCCGAATAGTATCTCACCGGCATTATA
45402570 GCCTGCTAGGCTCAAAGGCCCGAATA
1 GCCTGCTAGGCTCAAA-GCCCGAATA
45402596 ATACTGTGCG
Statistics
Matches: 103, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
43 13 0.13
44 10 0.10
45 79 0.77
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (44 bp):
GCCTGCTAGGCTCAAAGCCCGAATAGTATCTCACCGGCATTATA
Found at i:45403119 original size:2 final size:2
Alignment explanation
Indices: 45403112--45403172 Score: 70
Period size: 2 Copynumber: 30.5 Consensus size: 2
45403102 TCATATTTTC
* * *
45403112 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT TT ACC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
*
45403155 AG A- AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
45403173 GCTCATCAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
1 1 0.02
2 49 0.96
3 1 0.02
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:45403471 original size:47 final size:47
Alignment explanation
Indices: 45403414--45403560 Score: 240
Period size: 47 Copynumber: 3.1 Consensus size: 47
45403404 TTAAAATTTT
*
45403414 CTTTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAG
1 CTTT-ACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAG
*
45403462 CTTTACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAATAAG
1 CTTTACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAG
* * *
45403509 CTTAACTAAGTAACTTATCCGGAAATATTAAGAGTAAATTTGACAAG
1 CTTTACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAG
45403556 CTTTA
1 CTTTA
45403561 AATTCAACTT
Statistics
Matches: 92, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 88 0.96
48 4 0.04
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (47 bp):
CTTTACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAG
Found at i:45425486 original size:42 final size:42
Alignment explanation
Indices: 45425422--45425538 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 42
45425412 TTATTGAGAT
* *
45425422 TCACGTGTAAGACTATATCTGGGATATGGCATCGATATGAAA
1 TCACGTGTAAGACCATATCTGGGATATGGCATCGATACGAAA
* * * * *
45425464 -CTTCGTGTAAGACCATAGCTGGGCTATTTGCATCGATACGAGA
1 TC-ACGTGTAAGACCATATCTGGGATA-TGGCATCGATACGAAA
*
45425507 TCACATGTAAGACCATATCTGGGATATGGCAT
1 TCACGTGTAAGACCATATCTGGGATATGGCAT
45425539 TGGTACGGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 33 0.55
44 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (42 bp):
TCACGTGTAAGACCATATCTGGGATATGGCATCGATACGAAA
Found at i:45426176 original size:13 final size:13
Alignment explanation
Indices: 45426158--45426193 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
45426148 AAGTTGATAA
45426158 GTATGTGATATTC
1 GTATGTGATATTC
*
45426171 GTATGTTATATTC
1 GTATGTGATATTC
45426184 GTATGTGATA
1 GTATGTGATA
45426194 AATGGTAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.06, G:0.22, T:0.47
Consensus pattern (13 bp):
GTATGTGATATTC
Found at i:45429398 original size:39 final size:39
Alignment explanation
Indices: 45429236--45429388 Score: 236
Period size: 39 Copynumber: 3.9 Consensus size: 39
45429226 ATTACCAGCA
* * *
45429236 CCAGCACGAAGCCTGCGGGTCTTTAGCCTGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
45429275 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
45429314 CCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
45429353 CCAGCACGAAGCCTGCGGGACTCTTA-CCCAGATACA
1 CCAGCACGAAGCCTGCGGGACT-TTAGCCCGGATACA
45429389 ATCTCAGCAC
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 102 0.97
40 3 0.03
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:45434993 original size:39 final size:39
Alignment explanation
Indices: 45434792--45434983 Score: 312
Period size: 39 Copynumber: 4.9 Consensus size: 39
45434782 ATTACCAGCA
* * *
45434792 CCAGCACGAAGCCTGCGGGTCTTTAGCCTGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
45434831 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
45434870 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
45434909 CCAGCACGAAGCCGGCGGGACTTTAGCCGGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
45434948 CTAGCACGAAGCCTGCGGGACTCTAACCCGGATACA
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACA
45434984 ATCTCAGCAC
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 143 1.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:45438010 original size:20 final size:21
Alignment explanation
Indices: 45437985--45438025 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
45437975 CTAAACAGAT
*
45437985 AACTTAGGAAA-CTTTCAAAA
1 AACTTAGAAAATCTTTCAAAA
*
45438005 AACTTAGAAAATTTTTCAAAA
1 AACTTAGAAAATCTTTCAAAA
45438026 TACAGGGGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.29
Consensus pattern (21 bp):
AACTTAGAAAATCTTTCAAAA
Found at i:45443400 original size:12 final size:12
Alignment explanation
Indices: 45443383--45443416 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
45443373 CGACCCACCC
45443383 ATATTAATTTTT
1 ATATTAATTTTT
*
45443395 ATATTATTTTTT
1 ATATTAATTTTT
45443407 ATA-TAATTTT
1 ATATTAATTTT
45443417 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:45443683 original size:22 final size:22
Alignment explanation
Indices: 45443636--45443685 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
45443626 TAATAACAAC
*
45443636 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAACATAAGAGT
45443658 AAAATAGTAGCGAA-ATAGAGAG-
1 AAAATAGTAGC-AACATA-AGAGT
45443680 AAAATA
1 AAAATA
45443686 ATAAGAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAACATAAGAGT
Found at i:45444466 original size:19 final size:19
Alignment explanation
Indices: 45444442--45444482 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
45444432 TATAAATGCC
45444442 TATGTTTTAATTCAAGACA
1 TATGTTTTAATTCAAGACA
45444461 TATGTTTTAATTCAAGACA
1 TATGTTTTAATTCAAGACA
45444480 TAT
1 TAT
45444483 CAATAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (19 bp):
TATGTTTTAATTCAAGACA
Found at i:45450675 original size:29 final size:29
Alignment explanation
Indices: 45450642--45450772 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
45450632 TGACGAGATC
*
45450642 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
45450671 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
45450700 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
45450729 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
45450758 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
45450773 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:45458773 original size:29 final size:29
Alignment explanation
Indices: 45458740--45458861 Score: 172
Period size: 29 Copynumber: 4.2 Consensus size: 29
45458730 TGACGAGATC
* *
45458740 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
* *
45458769 GGCACTAAGTGTGCATGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
45458798 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
* * * *
45458827 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
45458856 GGCACT
1 GGCACT
45458862 GGGTGTGCGA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 84 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAT
Found at i:45465517 original size:12 final size:12
Alignment explanation
Indices: 45465502--45465535 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
45465492 CACTCTCCCC
*
45465502 AAAATCAGTCCT
1 AAAATCACTCCT
45465514 AAAATCACTCCT
1 AAAATCACTCCT
*
45465526 AAGATCACTC
1 AAAATCACTC
45465536 AACCAATTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.41, C:0.29, G:0.06, T:0.24
Consensus pattern (12 bp):
AAAATCACTCCT
Found at i:45468054 original size:46 final size:46
Alignment explanation
Indices: 45468004--45468173 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
45467994 TTGAGCATCC
45468004 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * *
45468050 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
*
45468097 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * *
45468143 -AAGCTCATTGAATTGAATCCGAGTTCACTTA
1 GAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
45468174 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 52 0.51
47 28 0.27
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:45468164 original size:93 final size:93
Alignment explanation
Indices: 45467998--45468168 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
45467988 GGATGGTTGA
* * *
45467998 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTGAACTCATTGAAT
*
45468063 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAATCCGAGTTCGTGAGATGTAACTAG
45468091 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT-AAGCTCATTGAA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTGAA-CTCATTGAA
45468155 TTGAATCCGAGTTC
65 TTGAATCCGAGTTC
45468169 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTGAACTCATTGAAT
TGAATCCGAGTTCGTGAGATGTAACTAG
Found at i:45474553 original size:40 final size:39
Alignment explanation
Indices: 45474508--45474695 Score: 157
Period size: 40 Copynumber: 4.7 Consensus size: 39
45474498 ATAACCACAA
* * * ** * *
45474508 GCACAATTGCCTTCGGGTATTAACCCGGATTTGGTATCTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATGACAACTC
45474548 GCACAAATGCCTTCGGGTCTTAGCCCGGATATGACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATGACAACTC
* *
45474588 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATGA-CAACTC
* * *
45474628 GCATAAATGCCTTCGGGACTTAGCCCGGATAT-ATTC-ACTA
1 GCA-CAATGCCTTCGGGTCTTAGCCCGGATATGA--CAACTC
* *
45474668 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
45474696 GTATCATTCA
Statistics
Matches: 132, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 128 0.97
41 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATGACAACTC
Found at i:45474616 original size:80 final size:79
Alignment explanation
Indices: 45474507--45474695 Score: 211
Period size: 80 Copynumber: 2.4 Consensus size: 79
45474497 TATAACCACA
* * * * ** * *
45474507 AGCACAATTGCCTTCGGGTATTAACCCGGATTTGGT-ATCTTGCACAAATGCCTTCGGGTCTTAG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCA-CTAGCACAAATGCCTTCGGGACTTAG
45474571 CCCGGATATGA-CAACT
65 CCCGGATAT-ATC-ACT
* * *
45474587 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGC
45474652 CCGGATATATTCACT
66 CCGGATATA-TCACT
* *
45474667 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
45474696 GTATCATTCA
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 88 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGC
CCGGATATATCACT
Found at i:45484396 original size:33 final size:32
Alignment explanation
Indices: 45484316--45484402 Score: 86
Period size: 33 Copynumber: 2.7 Consensus size: 32
45484306 AACAGGGACA
* *
45484316 ATATCAGTTAGGGCCTTAGCCCTTTCAGTAAC
1 ATATCAGTTAGGGCCTAAGCCATTTCAGTAAC
* * *
45484348 AGTAGCAGTTTGGGCCTGAGCCTATTTCAGTAAC
1 A-TATCAGTTAGGGCCTAAGCC-ATTTCAGTAAC
*
45484382 GATATCAG-TGGGGCCTAAGCC
1 -ATATCAGTTAGGGCCTAAGCC
45484403 CATTACAGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
32 1 0.02
33 28 0.62
34 15 0.33
35 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (32 bp):
ATATCAGTTAGGGCCTAAGCCATTTCAGTAAC
Found at i:45486554 original size:47 final size:47
Alignment explanation
Indices: 45486496--45486617 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
45486486 GCATTGGCAC
*
45486496 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
*
45486543 TAAGACAAGGATACCATATAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* * **
45486590 TAAGATAAGGTTATTATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
45486618 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:45486725 original size:55 final size:53
Alignment explanation
Indices: 45486605--45486792 Score: 223
Period size: 55 Copynumber: 3.5 Consensus size: 53
45486595 TAAGGTTATT
* * * *
45486605 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAATC
1 ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCT-TAAGGCAAAGATACC
* * *
45486659 ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACGTTAAGGCAAAGGTCCC
1 ATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-C-TTAAGGCAAAGATACC
* * * * *
45486714 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGCAATGATACC
1 ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTTAAGGCAAAGATACC
* *
45486767 ACGTAAGACCATGTCAAGACATGGCA
1 ATGTAAGACCATGCCAAGACATGGCA
45486793 ATGGTAAGTT
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 34 0.30
54 34 0.30
55 45 0.39
56 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.22
Consensus pattern (53 bp):
ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTTAAGGCAAAGATACC
Found at i:45496322 original size:10 final size:11
Alignment explanation
Indices: 45496300--45496333 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
45496290 TAGAGAAGGG
45496300 AAAGAAA-GAA
1 AAAGAAAGGAA
*
45496310 AAAAAAAGGAA
1 AAAGAAAGGAA
45496321 AAAGAAAGGAA
1 AAAGAAAGGAA
45496332 AA
1 AA
45496334 TTTTGAGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 6 0.29
11 15 0.71
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AAAGAAAGGAA
Found at i:45497731 original size:22 final size:22
Alignment explanation
Indices: 45497689--45497731 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
45497679 GCTAAAGTTA
*
45497689 GTATGGAATATACATATTTTGG
1 GTATGGAATATACATAGTTTGG
*
45497711 GTAT-GAATATATATAAGTTTG
1 GTATGGAATATACAT-AGTTTG
45497732 ATTAGCATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (22 bp):
GTATGGAATATACATAGTTTGG
Found at i:45503058 original size:48 final size:48
Alignment explanation
Indices: 45502984--45503211 Score: 182
Period size: 48 Copynumber: 4.9 Consensus size: 48
45502974 ACATGGTAGG
* * * *
45502984 ATGCCAATGCCATATCCCGGATATGGTCTTACATGGTATCACATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
** ** **
45503032 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGGTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
* * * * **
45503080 ATGTCAATGTCATGTCCCAAACATGGTCTTACAAGGGATCACATATTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
* * * ** *
45503128 ATACCGAT---A-G-CCCAG-CTATGGTCTTACACGAAATTACATATCA
1 ATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATCA
*
45503171 ATACCAAAT-CCATGTCCCAGACATGGTCTTACATGGGATCA
1 ATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCA
45503212 TACATAACAC
Statistics
Matches: 140, Mismatches: 33, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
42 1 0.01
43 29 0.21
44 3 0.02
45 1 0.01
46 1 0.01
47 1 0.01
48 103 0.74
49 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
Found at i:45512488 original size:27 final size:26
Alignment explanation
Indices: 45512444--45512495 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
45512434 CTCGCTGCAA
*
45512444 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
45512471 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
45512496 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:45512543 original size:2 final size:2
Alignment explanation
Indices: 45512538--45512573 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
45512528 ACACACACAC
45512538 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45512574 GTTCTGGTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45518627 original size:40 final size:40
Alignment explanation
Indices: 45518599--45518809 Score: 198
Period size: 40 Copynumber: 5.3 Consensus size: 40
45518589 GACTCACTCG
* *
45518599 ATTGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACA
1 ATTGCCTTCGGGACATAGCCCGGTTATAGCAACTCGCACA
45518639 ATTGCCTTCGGGA-ATTAGCCCGGATT-TAGCAACTCGCACA
1 ATTGCCTTCGGGACA-TAGCCCGG-TTATAGCAACTCGCACA
* * * * * *
45518679 AATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACA
1 ATTGCCTTCGGGACATAGCCCGGTTATAGCAACTCGCACA
* * * * * *
45518719 AATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACA
1 ATTGCCTTCGGGACATAGCCCGGTTATAGCAACTCGCACA
* * * *
45518759 AATGCCTTCGGGACTTA-CCCGGTT-TTGTAACTCGCACA
1 ATTGCCTTCGGGACATAGCCCGGTTATAGCAACTCGCACA
*
45518797 A-AGCCTTCGGGAC
1 ATTGCCTTCGGGAC
45518810 TTGACCCGGA
Statistics
Matches: 158, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
37 11 0.07
38 14 0.09
39 10 0.06
40 121 0.77
41 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
ATTGCCTTCGGGACATAGCCCGGTTATAGCAACTCGCACA
Found at i:45518703 original size:80 final size:78
Alignment explanation
Indices: 45518601--45518820 Score: 280
Period size: 80 Copynumber: 2.8 Consensus size: 78
45518591 CTCACTCGAT
* * * *
45518601 TGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTT
1 TGCCTTCGGGACTTAACCCGGTT-TAGTAACTCGCACAA-TGCCTTCGGGAATTAACCCGGATTT
45518666 AGCAACTCGCACAAA
64 AGCAACTCGCACAAA
* * *
45518681 TGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTT
1 TGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCAC-AATGCCTTCGGGAATTAACCCGGATTT
* *
45518746 GGTAACTCGCACAAA
64 AGCAACTCGCACAAA
* * * *
45518761 TGCCTTCGGGACTT-ACCCGGTTTTGTAACTCGCACAAAGCCTTCGGGACTTGACCCGGAT
1 TGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCACAATGCCTTCGGGAATTAACCCGGAT
45518821 ACCATTCGAA
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
77 22 0.18
78 14 0.11
79 6 0.05
80 79 0.63
81 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (78 bp):
TGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCACAATGCCTTCGGGAATTAACCCGGATTTAG
CAACTCGCACAAA
Found at i:45525595 original size:40 final size:39
Alignment explanation
Indices: 45525479--45525639 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 39
45525469 CGGGATTTAA
* *
45525479 CCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACACTAGCACAATTGCCTTCGGGTCTTAGC
* * *
45525518 CC-GATTTGGTA-ACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATAT--AACACTAGCACAATTGCCTTCGGGTCTTAGC
*
45525557 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTAGCAC-AATTGCCTTCGGGTCTTAGC
* * *
45525597 CCGGATATAATCACTAGCATAAATGCCTT-GGGACTTAGC
1 CCGGATATAA-CACTAGCACAATTGCCTTCGGGTCTTAGC
45525636 CCGG
1 CCGG
45525640 GTATCATTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
38 5 0.05
39 44 0.43
40 51 0.50
41 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:45525634 original size:79 final size:78
Alignment explanation
Indices: 45525465--45525639 Score: 185
Period size: 79 Copynumber: 2.2 Consensus size: 78
45525455 GAATCACGTA
* * * **
45525465 CCTTCGGGATTTA-ACCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGATTTGGTA
1 CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGATATAATA
* *
45525529 ACTTGCACAATTG
66 ACTAGCACAAATG
* ** *
45525542 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCC-GATATA
* *
45525606 ATCACTAGCATAAATG
63 ATAACTAGCACAAATG
45525622 CCTT-GGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45525640 GTATCATTCA
Statistics
Matches: 80, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
77 11 0.14
78 11 0.14
79 37 0.46
80 21 0.26
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGATATAATA
ACTAGCACAAATG
Found at i:45527437 original size:54 final size:54
Alignment explanation
Indices: 45527355--45527474 Score: 231
Period size: 54 Copynumber: 2.2 Consensus size: 54
45527345 ACACTGGCGA
45527355 CCGAAGTGCCTCATGTACCCACAGGGGGTCGATCACGATCTCGTCTAAAAAGGC
1 CCGAAGTGCCTCATGTACCCACAGGGGGTCGATCACGATCTCGTCTAAAAAGGC
*
45527409 CCGAAGTGCCTCGTGTACCCACAGGGGGTCGATCACGATCTCGTCTAAAAAGGC
1 CCGAAGTGCCTCATGTACCCACAGGGGGTCGATCACGATCTCGTCTAAAAAGGC
45527463 CCGAAGTGCCTC
1 CCGAAGTGCCTC
45527475 TAGACCGGCC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (54 bp):
CCGAAGTGCCTCATGTACCCACAGGGGGTCGATCACGATCTCGTCTAAAAAGGC
Found at i:45529969 original size:40 final size:40
Alignment explanation
Indices: 45529833--45529970 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 40
45529823 GCTCGATTGT
* * * *
45529833 CTTCGGGACATAG-CCCGGTTATAGTAATTCGCACAATTGC
1 CTTCGGGA-ATTGACCCGGTTTTAGTAACTCGCACAAATGC
* *
45529873 CTTCGGGAATT-AGCCCGGATTTAGCAACTCGCACAAATGC
1 CTTCGGGAATTGA-CCCGGTTTTAGTAACTCGCACAAATGC
* * *
45529913 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTGACCCGGTTTTAGTAACTCGCACAAATGC
45529953 CTTCGGGAATTGACCCGG
1 CTTCGGGAATTGACCCGG
45529971 ATACCATTCG
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.02
40 80 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGAATTGACCCGGTTTTAGTAACTCGCACAAATGC
Found at i:45533282 original size:21 final size:21
Alignment explanation
Indices: 45533257--45533299 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
45533247 GGGCATGTAT
45533257 GGATAAAATTTGAAAGAAAGG
1 GGATAAAATTTGAAAGAAAGG
45533278 GGATAAAATTTGAAAGAAAGG
1 GGATAAAATTTGAAAGAAAGG
45533299 G
1 G
45533300 CTTAAGGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.30, T:0.19
Consensus pattern (21 bp):
GGATAAAATTTGAAAGAAAGG
Found at i:45538020 original size:28 final size:27
Alignment explanation
Indices: 45537957--45538026 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
45537947 ATAGTGAGTC
45537957 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
45537984 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
45538012 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45538027 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:45554198 original size:40 final size:40
Alignment explanation
Indices: 45554102--45554279 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
45554092 CGAATGGTGT
* * * *
45554102 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
45554143 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
45554183 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
45554223 CCGGGCTAA-TTCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
45554262 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
45554280 ACAATCGAGC
Statistics
Matches: 112, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 30 0.27
40 57 0.51
41 25 0.22
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:45554264 original size:79 final size:80
Alignment explanation
Indices: 45554102--45554293 Score: 208
Period size: 79 Copynumber: 2.4 Consensus size: 80
45554092 CGAATGGTGT
* * * *
45554102 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
45554167 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
45554183 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAA-TTCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
45554246 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
45554262 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
45554294 CGCTATATCC
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
79 52 0.56
80 16 0.17
81 25 0.27
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:45554304 original size:79 final size:79
Alignment explanation
Indices: 45554136--45554319 Score: 181
Period size: 79 Copynumber: 2.3 Consensus size: 79
45554126 GTGCTAAGTG
* * * * * * *
45554136 ACTAAATCCGGGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGCT-AAATTCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
* * * *
45554201 GCATTCGTGCGAGTT
65 ACAATCGAGCGAGTC
* * * *
45554216 ATTAAATCCGGGCT-AATTCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
1 ACTAAATCC-GGCTAAATTCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
45554280 ACAATCGAGCGAGTC
65 ACAATCGAGCGAGTC
* * *
45554295 GCTATATCCGGTTAAATTCCGAAGG
1 ACTAAATCCGGCTAAATTCCGAAGG
45554320 TACGTGATTC
Statistics
Matches: 83, Mismatches: 19, Indels: 5
0.78 0.18 0.05
Matches are distributed among these distances:
78 3 0.04
79 69 0.83
80 8 0.10
81 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (79 bp):
ACTAAATCCGGCTAAATTCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGA
CAATCGAGCGAGTC
Found at i:45561925 original size:40 final size:40
Alignment explanation
Indices: 45561884--45562048 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
45561874 TGGGACATAG
* * * * *
45561884 CCCGGTTATAGTAATTCACACAATTGCCTTCGGGAATTAG
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* * * *
45561924 CCCGGATTTAGCAACTCGCACAAATGTCTTCGGGACTTAA
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* *
45561964 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* *
45562004 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGA
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
45562044 CCCGG
1 CCCGG
45562049 ATACCATTCG
Statistics
Matches: 110, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 110 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
Found at i:45563965 original size:20 final size:20
Alignment explanation
Indices: 45563936--45563986 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
45563926 CAATGACCTA
45563936 TCCA-TTACTTA-TTTACCAC
1 TCCATTTACTTACTTT-CCAC
* *
45563955 TCCATTTACTTACTTTCTAT
1 TCCATTTACTTACTTTCCAC
45563975 TCCATTTACTTA
1 TCCATTTACTTA
45563987 GCATAAGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 4 0.14
20 21 0.75
21 3 0.11
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (20 bp):
TCCATTTACTTACTTTCCAC
Found at i:45565076 original size:45 final size:45
Alignment explanation
Indices: 45565027--45565242 Score: 279
Period size: 45 Copynumber: 4.8 Consensus size: 45
45565017 CTTTGAGTCA
* * * *
45565027 TGATGTCATAGCGTCTTTCAGTTATGGTCTTACTCGATAGGATTG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATTG
* * *
45565072 TGATGCTATAAGGTCTTTCAGTCATGGTCTTACTCGATAGAATCG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATTG
* * * *
45565117 TGATGCCATAATGTCTTTCAATCATGGTCTTACTCGATAAAATTA
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATTG
* * *
45565162 TGATGCCATAACATTTTTCAGTCATGGTCTTACTCGATGGAATTG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATTG
* * *
45565207 TGATGACATAACATCTTTCAGTCATGGTCTTCCTCG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCG
45565243 TTTCTAGTAT
Statistics
Matches: 148, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 148 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (45 bp):
TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATTG
Found at i:45566865 original size:15 final size:15
Alignment explanation
Indices: 45566845--45566874 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45566835 CTATGCATGT
*
45566845 AAAATATAAAAGACA
1 AAAATACAAAAGACA
45566860 AAAATACAAAAGACA
1 AAAATACAAAAGACA
45566875 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.10, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAATACAAAAGACA
Found at i:45570593 original size:16 final size:16
Alignment explanation
Indices: 45570568--45570598 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45570558 ATAATGAAAT
*
45570568 TTCAATTAAAATAAAG
1 TTCAAATAAAATAAAG
45570584 TTCAAATAAAATAAA
1 TTCAAATAAAATAAA
45570599 CAAAACTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.29
Consensus pattern (16 bp):
TTCAAATAAAATAAAG
Found at i:45577785 original size:15 final size:15
Alignment explanation
Indices: 45577765--45577804 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
45577755 AATAAATCAT
45577765 TAAAAATCA-TAAAAA
1 TAAAAAT-ATTAAAAA
45577780 TAAAAATATTAAAAA
1 TAAAAATATTAAAAA
45577795 TAAAAATATT
1 TAAAAATATT
45577805 TTGGTTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 1 0.04
15 23 0.96
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAAAATATTAAAAA
Found at i:45581864 original size:24 final size:25
Alignment explanation
Indices: 45581794--45581866 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 25
45581784 GGCCTATTTT
*
45581794 CGGCCTCTCACGGAATAGCCATTCA
1 CGGCCTCTCACAGAATAGCCATTCA
* * *
45581819 AGGCTATCATCAAAGAATAGCCATTC-
1 CGGC-CTC-TCACAGAATAGCCATTCA
45581845 CGGCCTCTCACAGAATAGCCAT
1 CGGCCTCTCACAGAATAGCCAT
45581867 CAAATTTTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
24 14 0.36
25 5 0.13
26 5 0.13
27 15 0.38
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.21
Consensus pattern (25 bp):
CGGCCTCTCACAGAATAGCCATTCA
Found at i:45587432 original size:40 final size:39
Alignment explanation
Indices: 45587382--45587506 Score: 124
Period size: 39 Copynumber: 3.2 Consensus size: 39
45587372 CCTGAGTCCA
* * * *
45587382 ATTTCTAGCACAAAGCCTGTGGGACTTTAAGCCCGGATAT
1 ATTTCCAGCACAAAGCCTG-CGGACCTCAAGCCCGGATAT
* **
45587422 ATTTCCAGCACATAGCCTGCGGACCTCAAGTTCGGATAT
1 ATTTCCAGCACAAAGCCTGCGGACCTCAAGCCCGGATAT
* ** * *
45587461 GTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCAGATAT
1 ATTTCCAGCACAAAGCCTGCGGACCTCAAGCCCGGATAT
*
45587500 GTTTCCA
1 ATTTCCA
45587507 AGTATCATGC
Statistics
Matches: 74, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 57 0.77
40 17 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
ATTTCCAGCACAAAGCCTGCGGACCTCAAGCCCGGATAT
Found at i:45587466 original size:39 final size:39
Alignment explanation
Indices: 45587414--45587506 Score: 150
Period size: 39 Copynumber: 2.4 Consensus size: 39
45587404 GACTTTAAGC
*
45587414 CCGGATATATTTCCAGCACATAGCCTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACATAGCCTGCGGACCTCAAGT
* *
45587453 TCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACATAGCCTGCGGACCTCAAGT
*
45587492 CCAGATATGTTTCCA
1 CCGGATATGTTTCCA
45587507 AGTATCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATGTTTCCAGCACATAGCCTGCGGACCTCAAGT
Found at i:45588190 original size:2 final size:2
Alignment explanation
Indices: 45588177--45588211 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
45588167 TAAGGCATAA
*
45588177 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45588212 GTGCATGCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:45588190 original size:10 final size:10
Alignment explanation
Indices: 45588172--45588211 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
45588162 ATACATAAGG
*
45588172 CATAAATATA
1 CATATATATA
45588182 CATATATATA
1 CATATATATA
*
45588192 TATATATATA
1 CATATATATA
*
45588202 TATATATATA
1 CATATATATA
45588212 GTGCATGCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (10 bp):
CATATATATA
Found at i:45601762 original size:20 final size:19
Alignment explanation
Indices: 45601745--45601997 Score: 65
Period size: 18 Copynumber: 14.2 Consensus size: 19
45601735 TTTCTTTTTC
45601745 ATTTAAATTCTATTTTTTAA
1 ATTTAAATT-TATTTTTTAA
*
45601765 ATTTAAATTTATTCCTTTAA
1 ATTTAAATTTATT-TTTTAA
***
45601785 A-TT-AATTTACCCTTT-A
1 ATTTAAATTTATTTTTTAA
*
45601801 A-TT--ATTTGTTTCTTT--
1 ATTTAAATTTATTT-TTTAA
*
45601816 ACTTAAATTCTATTTTTTAAA
1 ATTTAAATT-TATTTTTT-AA
* * *
45601837 ATTTGAAGTTATTCCTTTAA
1 ATTTAAATTTATT-TTTTAA
* *
45601857 A-TT-GATTTATCTTTT-A
1 ATTTAAATTTATTTTTTAA
45601873 A-TT--ATTTA-TTTTT-A
1 ATTTAAATTTATTTTTTAA
45601887 A-TTAAATTGTATTTTTTAAA
1 ATTTAAATT-TATTTTTT-AA
* *
45601907 ATTTAAATTTATTCCTTTGA
1 ATTTAAATTTATT-TTTTAA
* **
45601927 A--TAGATTTATCCTTT-A
1 ATTTAAATTTATTTTTTAA
45601943 A-TT--ATTTA-TTTTT-A
1 ATTTAAATTTATTTTTTAA
45601957 A-TTAAATTATATTTTTT-A
1 ATTTAAATT-TATTTTTTAA
*
45601975 ATTTAAATTTATTCCTTTAA
1 ATTTAAATTTATT-TTTTAA
45601995 ATT
1 ATT
45601998 AATTTATCCC
Statistics
Matches: 183, Mismatches: 24, Indels: 52
0.71 0.09 0.20
Matches are distributed among these distances:
14 15 0.08
15 15 0.08
16 21 0.11
17 16 0.09
18 41 0.22
19 22 0.12
20 34 0.19
21 19 0.10
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (19 bp):
ATTTAAATTTATTTTTTAA
Found at i:45601790 original size:70 final size:70
Alignment explanation
Indices: 45601710--45602073 Score: 479
Period size: 70 Copynumber: 5.2 Consensus size: 70
45601700 ATTCTATTTA
* *
45601710 TTTAAATTAATTTATCCTTTAATTATTTCTTTTTCATTTAAATTCTATTTTTT-AAATTTAAATT
1 TTTAAATTAATTTATCCTTTAATTATTTATTTTT-AATTAAATTCTATTTTTTAAAATTTAAATT
45601774 TATTCC
65 TATTCC
* * * * *
45601780 TTTAAATTAATTTACCCTTTAATTATTTGTTTCTTTACTTAAATTCTATTTTTTAAAATTTGAAG
1 TTTAAATTAATTTATCCTTTAATTATTT-ATT-TTTAATTAAATTCTATTTTTTAAAATTTAAAT
45601845 TTATTCC
64 TTATTCC
* * *
45601852 TTTAAATTGATTTATCTTTTAATTATTTATTTTTAATTAAATTGTATTTTTTAAAATTTAAATTT
1 TTTAAATTAATTTATCCTTTAATTATTTATTTTTAATTAAATTCTATTTTTTAAAATTTAAATTT
45601917 ATTCC
66 ATTCC
* *
45601922 TTTGAA-TAGATTTATCCTTTAATTATTTATTTTTAATTAAATTATATTTTTT--AATTTAAATT
1 TTTAAATTA-ATTTATCCTTTAATTATTTATTTTTAATTAAATTCTATTTTTTAAAATTTAAATT
45601984 TATTCC
65 TATTCC
* * *
45601990 TTTAAATTAATTTATCCCTCAA-AATTTATTTTTAAATT-AATTCTATTTTTTTAAAAATTTAAA
1 TTTAAATTAATTTATCCTTTAATTATTTATTTTT-AATTAAATTCTA-TTTTTT-AAAATTTAAA
45602053 TTTATTCC
63 TTTATTCC
*
45602061 TTTAAATTTATTT
1 TTTAAATTAATTT
45602074 TTTAATTAAA
Statistics
Matches: 261, Mismatches: 23, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
67 16 0.06
68 42 0.16
69 3 0.01
70 108 0.41
71 49 0.19
72 43 0.16
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (70 bp):
TTTAAATTAATTTATCCTTTAATTATTTATTTTTAATTAAATTCTATTTTTTAAAATTTAAATTT
ATTCC
Found at i:45601801 original size:51 final size:50
Alignment explanation
Indices: 45601697--45601801 Score: 115
Period size: 51 Copynumber: 2.1 Consensus size: 50
45601687 TCTTTTTAAG
** **
45601697 TAAATTCTATTTATTTAAATTAATTTATCCTTTAATTATTTCTTTTTCATT
1 TAAATTCTATTTATTTAAATTAATTTATCCTTTAA-TATTAATTTACCATT
*
45601748 TAAATTCTATTT-TTTAAATTTAAATTTATTCCTTTAA-ATTAATTTACCCTT
1 TAAATTCTATTTATTTAAA-TT-AATTTA-TCCTTTAATATTAATTTACCATT
45601799 TAA
1 TAA
45601802 TTATTTGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
50 6 0.13
51 26 0.57
52 6 0.13
53 8 0.17
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.57
Consensus pattern (50 bp):
TAAATTCTATTTATTTAAATTAATTTATCCTTTAATATTAATTTACCATT
Found at i:45601887 original size:14 final size:15
Alignment explanation
Indices: 45601851--45601890 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
45601841 GAAGTTATTC
*
45601851 CTTTAAATTGATTTAT
1 CTTTTAATT-ATTTAT
45601867 CTTTTAATTATTTAT
1 CTTTTAATTATTTAT
45601882 -TTTTAATTA
1 CTTTTAATTA
45601891 AATTGTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.39
15 6 0.26
16 8 0.35
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (15 bp):
CTTTTAATTATTTAT
Found at i:45601923 original size:142 final size:139
Alignment explanation
Indices: 45601710--45602073 Score: 477
Period size: 142 Copynumber: 2.6 Consensus size: 139
45601700 ATTCTATTTA
* * *
45601710 TTTAAATTAATTTATCCTTTAATTATTTCTTTTTCATTTAAATTCTATTTTTT-AAATTTAAATT
1 TTTAAATTAATTTATCCTTTAATTATTTATTTTTAAATTAAATTCTATTTTTTAAAATTTAAATT
* * *
45601774 TATTCCTTTAAATTAATTTACCCTTTAATTATTTGTTTCTTTACTTAAATTCTATTTTTTAAAAT
66 TATTCCTTTAAATTAATTTACCCTTTAATTATTT-ATT-TTTAATTAAATTATATTTTTT--AAT
*
45601839 TTGAAGTTATTCC
127 TTAAAGTTATTCC
* * *
45601852 TTTAAATTGATTTATCTTTTAATTATTTATTTTT-AATTAAATTGTATTTTTTAAAATTTAAATT
1 TTTAAATTAATTTATCCTTTAATTATTTATTTTTAAATTAAATTCTATTTTTTAAAATTTAAATT
* *
45601916 TATTCCTTTGAA-TAGATTTATCCTTTAATTATTTATTTTTAATTAAATTATATTTTTTAATTTA
66 TATTCCTTTAAATTA-ATTTACCCTTTAATTATTTATTTTTAATTAAATTATATTTTTTAATTTA
*
45601980 AATTTATTCC
130 AAGTTATTCC
* * *
45601990 TTTAAATTAATTTATCCCTCAA-AATTTATTTTTAAATT-AATTCTATTTTTTTAAAAATTTAAA
1 TTTAAATTAATTTATCCTTTAATTATTTATTTTTAAATTAAATTCTA-TTTTTT-AAAATTTAAA
*
45602053 TTTATTCCTTTAAATTTATTT
64 TTTATTCCTTTAAATTAATTT
45602074 TTTAATTAAA
Statistics
Matches: 196, Mismatches: 20, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
137 16 0.08
138 42 0.21
139 27 0.14
140 20 0.10
141 20 0.10
142 71 0.36
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (139 bp):
TTTAAATTAATTTATCCTTTAATTATTTATTTTTAAATTAAATTCTATTTTTTAAAATTTAAATT
TATTCCTTTAAATTAATTTACCCTTTAATTATTTATTTTTAATTAAATTATATTTTTTAATTTAA
AGTTATTCC
Found at i:45605186 original size:33 final size:33
Alignment explanation
Indices: 45605148--45605246 Score: 137
Period size: 33 Copynumber: 3.0 Consensus size: 33
45605138 GATTGATTGG
* *
45605148 GAGTGTTTGGTTGCTAGACAGGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
* * *
45605181 GAGTGTTTTGCTACTGGACAGGAGCTGAAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
45605214 -AGGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
1 GA-GTGTTTTGTTGCTGGACAGGAGCTGGAATGT
45605247 CAAGAAGAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
32 1 0.02
33 56 0.98
ACGTcount: A:0.21, C:0.10, G:0.37, T:0.31
Consensus pattern (33 bp):
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Found at i:45615887 original size:40 final size:39
Alignment explanation
Indices: 45615843--45616027 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 39
45615833 GCTACTCGTT
* * *
45615843 CAAATACCTTCGGGACATAGCCCGATTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
*
45615883 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
*
45615923 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAACTCGCA
* * * *
45615963 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
45616004 CAAA-GCCTTCGGGACTTAGCCCGA
1 CAAATGCCTTCGGGACTTAGCCCGA
45616028 ACATCATTCG
Statistics
Matches: 130, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
39 7 0.05
40 106 0.82
41 17 0.13
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:45623286 original size:16 final size:18
Alignment explanation
Indices: 45623267--45623299 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
45623257 CATACGAATT
45623267 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
45623283 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
45623300 GTGTGTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:45624702 original size:40 final size:39
Alignment explanation
Indices: 45624657--45624786 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
45624647 CGGAATATAA
45624657 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
45624697 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
45624737 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
45624777 CCGGATATAA
1 CCGGATATAA
45624787 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:45624801 original size:40 final size:40
Alignment explanation
Indices: 45624673--45624824 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
45624663 ATAACCATGT
* * *
45624673 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
45624713 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
45624753 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
45624793 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
45624825 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:45624807 original size:80 final size:80
Alignment explanation
Indices: 45624673--45624822 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
45624663 ATAACCATGT
*
45624673 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
45624737 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
45624753 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
45624816 CCCGGAT
64 CCCGGAT
45624823 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:45632725 original size:40 final size:39
Alignment explanation
Indices: 45632680--45632809 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
45632670 CGGAATATAA
45632680 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
45632720 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
45632760 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
45632800 CCGGATATAA
1 CCGGATATAA
45632810 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:45632824 original size:40 final size:40
Alignment explanation
Indices: 45632696--45632847 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
45632686 ATAACCATGT
* * *
45632696 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
45632736 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
45632776 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
45632816 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
45632848 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:45632830 original size:80 final size:80
Alignment explanation
Indices: 45632696--45632845 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
45632686 ATAACCATGT
*
45632696 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
45632760 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
45632776 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
45632839 CCCGGAT
64 CCCGGAT
45632846 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:45635176 original size:43 final size:43
Alignment explanation
Indices: 45635092--45635259 Score: 223
Period size: 43 Copynumber: 4.0 Consensus size: 43
45635082 AAGTCTAAAC
* * *
45635092 TCAT-TCACCGGCATT-TCGCCTGTTAGGCTCGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATA
* * *
45635133 TCATCTCACCGGCATTATAGCCTGCTAGGCCCAAATCCAGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATA
* * *
45635176 TCATCTCACTGGCATTATAGCCTACTAGGCTCGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATA
* *
45635219 TCATATCACCGGCATTATAGCCCGCTAGGCTCAAAGCCCGA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGA
45635260 ATGTTACATT
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 4 0.04
42 11 0.10
43 93 0.86
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (43 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATA
Found at i:45637314 original size:13 final size:14
Alignment explanation
Indices: 45637289--45637317 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
45637279 AAGGCACGAA
45637289 AAATTCACACATAC
1 AAATTCACACATAC
45637303 AAATTC-CACATAC
1 AAATTCACACATAC
45637316 AA
1 AA
45637318 TAAGCACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATTCACACATAC
Found at i:45649326 original size:46 final size:44
Alignment explanation
Indices: 45649259--45649378 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 44
45649249 CCTGAGAGTT
* *
45649259 AGTGTAAGACATGTCTGGGACATGTATCGGCCT-CAAGATGTAAGAC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACAAGATGT--GAC
*
45649305 AGTGTAAGACATGTCTGGGACATGCATCAGCTACAAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACAAGATGTGAC
*
45649349 AGTGTAAGACCATGTCTAGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
45649379 GGCACGGATA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
44 11 0.16
45 15 0.22
46 41 0.61
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTACAAGATGTGAC
Found at i:45649459 original size:97 final size:94
Alignment explanation
Indices: 45649304--45649479 Score: 239
Period size: 97 Copynumber: 1.8 Consensus size: 94
45649294 AGATGTAAGA
* *
45649304 CAGTGTAAGACATGTCTGGGACATGCATCAGCTACAAGATGTGTCAGTGTAAGACCATGTCT-AG
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCTACAAGATGAGCCAGTGTAAGACCATGTCTGA-
45649368 GACATGGCATCGGCACGGATACGTGAGAGT
65 GACATGGCATCGGCACGGATACGTGAGAGT
** *
45649398 CAGTGTAAGACCATGTCTGGGACATGACAT-AGACTTTATGGATGAGCCAGTGTAAGACCATGTC
1 CAGTGTAAGA-CATGTCTGGGACATG-CATCAG-CTACA-AGATGAGCCAGTGTAAGACCATGTC
*
45649462 TGAGACATGGCATTGGCA
62 TGAGACATGGCATCGGCA
45649480 TTATACCCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
94 10 0.14
95 17 0.24
96 6 0.08
97 37 0.52
98 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
CAGTGTAAGACATGTCTGGGACATGCATCAGCTACAAGATGAGCCAGTGTAAGACCATGTCTGAG
ACATGGCATCGGCACGGATACGTGAGAGT
Found at i:45651337 original size:10 final size:10
Alignment explanation
Indices: 45651313--45651347 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
45651303 GTTAAAGAGG
45651313 GTTTAGAAAAA
1 GTTT-GAAAAA
*
45651324 GTTTGAAGAA
1 GTTTGAAAAA
45651334 GTTTGAAAAA
1 GTTTGAAAAA
45651344 GTTT
1 GTTT
45651348 TAAATTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.34
Consensus pattern (10 bp):
GTTTGAAAAA
Found at i:45653629 original size:107 final size:109
Alignment explanation
Indices: 45653441--45653639 Score: 307
Period size: 107 Copynumber: 1.8 Consensus size: 109
45653431 TTTAAGGATA
*
45653441 CCATGTAAGACATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CCATGTAAGACATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
*
45653506 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGTAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
* *
45653550 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTC-ATAGGCAAGGATACCATGTAAG
1 CCATGTAAGA-CATGCCAAGGCATGGCAATTGGTAAGGTTTCTA-AGGCAAGGAAACCATGTAAG
*
45653611 ACCATGTCAAGACATGGCAATGGTAAGTT
64 ACCATGTCAAGACATGGCAATGATAAGTT
45653640 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
106 1 0.01
107 48 0.58
108 1 0.01
109 17 0.20
110 16 0.19
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
Found at i:45653665 original size:49 final size:50
Alignment explanation
Indices: 45653434--45653686 Score: 210
Period size: 55 Copynumber: 4.9 Consensus size: 50
45653424 ATTAGGGTTT
* *
45653434 AAGGATACCATGTAAGA-CATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAA-TGGTAA-G-TTCAT-A-G
* * * * *
45653487 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTT-C-AT-A-G
* * * * *
45653542 TAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAGG
1 --AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTCATA-G
*
45653594 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCA-A-
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAG-TTCATAG
*
45653644 AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAG
45653687 GTACCCGTGC
Statistics
Matches: 170, Mismatches: 22, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
49 41 0.24
51 4 0.02
52 39 0.23
53 8 0.05
54 21 0.12
55 53 0.31
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (50 bp):
AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTCATAG
Found at i:45653792 original size:23 final size:24
Alignment explanation
Indices: 45653755--45653799 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
45653745 AAGGTAAGTT
*
45653755 AAGGTAAAACGAGTT-ATGCTAAA
1 AAGGTAAAACAAGTTCATGCTAAA
*
45653778 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAAACAAGTTCATGCTA
45653800 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (24 bp):
AAGGTAAAACAAGTTCATGCTAAA
Found at i:45661598 original size:50 final size:51
Alignment explanation
Indices: 45661521--45661649 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
45661511 GACCATGGCA
*
45661521 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGAAAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAA-TG
* * *
45661572 A-AAGTGACAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGAAAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
* *
45661622 ACAAGTGAAAAGTGGTACCTTCAGCTAC
1 ACAAGTGAAAAGTGATAGCTTCAGCTAC
45661650 CTGATCAATG
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 43 0.62
51 26 0.38
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (51 bp):
ACAAGTGAAAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
Found at i:45661665 original size:31 final size:31
Alignment explanation
Indices: 45661625--45661804 Score: 256
Period size: 31 Copynumber: 5.8 Consensus size: 31
45661615 ACAAATGACA
* *
45661625 AGTGAAAAGTGGTACCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
45661656 AATGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
45661687 AGTGAAAAGTGGTAG-TTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
45661718 AGTGAAAAGTGGTAGCTTCGGCTACCTGGTC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
45661749 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
45661780 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
45661805 AAGTGACAAG
Statistics
Matches: 134, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
30 4 0.03
31 126 0.94
32 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:45661899 original size:47 final size:46
Alignment explanation
Indices: 45661829--45661994 Score: 171
Period size: 47 Copynumber: 3.7 Consensus size: 46
45661819 AAGTGATTTC
* *
45661829 CGTATAAGACCATATCTGGGATATGGCATCAGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* *
45661875 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * *
45661922 CGTGTAAGACCATAGCTAGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATG-ATA
* * * *
45661964 TGTGTAAGACCATAGCTGGGCTATGGCATCA
1 CGTATAAGACCATATCTGGGATATGGCATCA
45661995 TTATGTGAAG
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
41 7 0.07
42 30 0.29
46 26 0.25
47 42 0.40
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:45661986 original size:42 final size:43
Alignment explanation
Indices: 45661923--45662037 Score: 162
Period size: 42 Copynumber: 2.7 Consensus size: 43
45661913 TATGTGATTC
* *
45661923 GTGTAAGACCATAGCTAGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
45661965 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
45662007 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
45662038 GAAAACGAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:45664744 original size:108 final size:110
Alignment explanation
Indices: 45664547--45664745 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
45664537 TAAGGATACC
* * * *
45664547 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTATAAGGTAAGGAAATCATGTAAGGCC
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGACC
*
45664612 ATGTAAAGACATAGCATTGATAAGTTACTATAAGGCAAAGGTCCT
66 ATGTAAAGACATAGCAATGATAAGTTACTATAAGGCAAAGGTCCT
* * *
45664657 ATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGACC
* * *
45664720 ATGTTAAGACATGGCAATGGTAAGTT
66 ATGTAAAGACATAGCAATGATAAGTT
45664746 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 47 0.60
109 7 0.09
110 24 0.31
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGACC
ATGTAAAGACATAGCAATGATAAGTTACTATAAGGCAAAGGTCCT
Found at i:45664887 original size:23 final size:24
Alignment explanation
Indices: 45664861--45664905 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
45664851 AAGGTAAGGT
*
45664861 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
45664884 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
45664906 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:45665005 original size:16 final size:16
Alignment explanation
Indices: 45664984--45665014 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45664974 ATAAATTTGA
45664984 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
45665000 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
45665015 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:45665482 original size:36 final size:36
Alignment explanation
Indices: 45665435--45665506 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
45665425 TCATGAAAAA
*
45665435 GGTGAAATTAGCTTTAAAATAGTATCGGACAGCAGT
1 GGTGAAATTAGCTTTAAAATAGTATCGGACAACAGT
45665471 GGTGAAATTAGCTTTAAAATAGTATCGGACAACAGT
1 GGTGAAATTAGCTTTAAAATAGTATCGGACAACAGT
45665507 AATAATGTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.28
Consensus pattern (36 bp):
GGTGAAATTAGCTTTAAAATAGTATCGGACAACAGT
Found at i:45668682 original size:79 final size:81
Alignment explanation
Indices: 45668585--45668761 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 81
45668575 CTCGCTCAAT
** * * *
45668585 TGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGT
1 TGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCCGGAT
*
45668648 TTAGTAACTT-GCACAAA
64 ATAGTAACTTAGCACAAA
* **
45668665 TGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGATAT
*
45668729 AGTCACTTAGCACAAA
66 AGTAACTTAGCACAAA
45668745 -GCCTTCGGGACTTAGCC
1 TGCCTTCGGGACTTAGCC
45668762 TGGACATCAT
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.04
79 54 0.65
80 26 0.31
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (81 bp):
TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGATAT
AGTAACTTAGCACAAA
Found at i:45668695 original size:39 final size:40
Alignment explanation
Indices: 45668585--45668761 Score: 173
Period size: 40 Copynumber: 4.5 Consensus size: 40
45668575 CTCGCTCAAT
** * * *
45668585 TGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCACAAA
* *
45668625 TGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACAAA
* * *
45668665 TGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACAAA
* * * *
45668704 TGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCACAAA
45668745 -GCCTTCGGGACTTAGCC
1 TGCCTTCGGGACTTAGCC
45668762 TGGACATCAT
Statistics
Matches: 112, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.28
40 68 0.61
41 11 0.10
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACAAA
Found at i:45683360 original size:42 final size:42
Alignment explanation
Indices: 45683315--45683480 Score: 165
Period size: 42 Copynumber: 3.9 Consensus size: 42
45683305 ACATTAGGGT
* *
45683315 TATGAG-TTTACGTGTAAGACCATATCTGGGATATGGCATTGT
1 TATGAGATTT-CGTGTAAGACCATATCTGGGATATGGCATCGA
* * * * *
45683357 TATGAGATTTTGTGTAGGACCATGTATGGGACATGGCATCGA
1 TATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGA
* * *
45683399 TATGAGA-ATCGTGTAAGACCATAGCTGGGCTATTGGCATCGA
1 TATGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGA
* * *
45683441 TATGAGATTTTCCATGTAAGACTATATTTGGGATATGGCA
1 TATGAGA-TTT-CGTGTAAGACCATATCTGGGATATGGCA
45683481 GTGGTATGAT
Statistics
Matches: 98, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 17 0.17
42 54 0.55
43 3 0.03
44 6 0.06
45 18 0.18
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGA
Found at i:45692014 original size:42 final size:42
Alignment explanation
Indices: 45691893--45692014 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
45691883 TACCATACCA
* * * *
45691893 ATGCTATATCCCAGATATGGCCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * *
45691935 ATGCCAATAGCCCAGCA-ATGGTCGTATACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAG-ATATGGTCTTACACGTAA-TCTCATATCG
*
45691978 ATGCCATATCCGAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
45692015 GTAACCCTAA
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
41 1 0.02
42 29 0.45
43 33 0.52
44 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:45696548 original size:21 final size:21
Alignment explanation
Indices: 45696522--45696562 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
45696512 TGTAGTTTCA
45696522 ACTATCTAGAAGTATATGCTT
1 ACTATCTAGAAGTATATGCTT
45696543 ACTATCTAGAAGTATATGCT
1 ACTATCTAGAAGTATATGCT
45696563 ATCACTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (21 bp):
ACTATCTAGAAGTATATGCTT
Found at i:45698794 original size:27 final size:27
Alignment explanation
Indices: 45698585--45698793 Score: 283
Period size: 27 Copynumber: 7.7 Consensus size: 27
45698575 GAGTATTTCG
* *
45698585 GTCATTTTATCACATAAGGGAAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
45698612 GCCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * * *
45698639 ATCATTTTATTACCTAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
45698666 GTCATTTTATCACCTAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
45698693 GTCATTTTATCATATAAGGGCAAAATA
1 GTCATTTTATCACATAAGGGCAAAATC
45698720 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
45698747 ATCATTTTATCACATAAGGGTAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* *
45698774 TTCATTTAATCACATAAGGG
1 GTCATTTTATCACATAAGGG
45698794 TTTAGGTATG
Statistics
Matches: 161, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:45705846 original size:29 final size:29
Alignment explanation
Indices: 45705814--45706016 Score: 230
Period size: 29 Copynumber: 7.0 Consensus size: 29
45705804 ATGACGTATC
* *
45705814 GATGCCCATCAAATATGAAATGGGATGGT
1 GATGACCATCAAATATGAAAAGGGATGGT
45705843 GATGACCATCAAATATGAAAAGGGATGGT
1 GATGACCATCAAATATGAAAAGGGATGGT
* * *
45705872 -TTCGACCATCGAATATAAAAAGGGATGGT
1 GAT-GACCATCAAATATGAAAAGGGATGGT
* * *
45705901 GACGACCATCGAATATGAAAAGGGATGAT
1 GATGACCATCAAATATGAAAAGGGATGGT
** ** *
45705930 GACAACCATTGAATATGAAAAGGGATGAT
1 GATGACCATCAAATATGAAAAGGGATGGT
*
45705959 GACGACCATCAAATATGAAAAGGGATGGT
1 GATGACCATCAAATATGAAAAGGGATGGT
* *
45705988 AATGACCAT-AGAAGATGAAAAGGGATGGT
1 GATGACCATCA-AATATGAAAAGGGATGGT
45706017 TTCGACCATC
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
28 2 0.01
29 151 0.99
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (29 bp):
GATGACCATCAAATATGAAAAGGGATGGT
Found at i:45705897 original size:58 final size:58
Alignment explanation
Indices: 45705819--45706027 Score: 260
Period size: 58 Copynumber: 3.6 Consensus size: 58
45705809 GTATCGATGC
* * * *
45705819 CCATCAAATATGAAATGGGATGGTGATGACCATCAAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTATCGA
* * * *
45705877 CCATCGAATATAAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGATGA-CAA
1 CCATCGAATATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGT-ATCGA
* *
45705935 CCATTGAATATGAAAAGGGATGATGACGACCATCAAATATGAAAAGGGATGGTAAT-GA
1 CCATCGAATATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGT-ATCGA
* * **
45705993 CCATAGAAGATGAAAAGGGATGGTTTCGACCATCA
1 CCATCGAATATGAAAAGGGATGGTGACGACCATCA
45706028 TTCAACACAC
Statistics
Matches: 129, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
58 129 1.00
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.21
Consensus pattern (58 bp):
CCATCGAATATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTATCGA
Found at i:45709427 original size:20 final size:21
Alignment explanation
Indices: 45709402--45709441 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45709392 ACTTTGGAAT
45709402 AGGGC-ACAAGCCCATGTGGA
1 AGGGCAACAAGCCCATGTGGA
* *
45709422 AGGGCAACACGCCCGTGTGG
1 AGGGCAACAAGCCCATGTGG
45709442 CCATTTCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.25, C:0.28, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACAAGCCCATGTGGA
Found at i:45714339 original size:46 final size:45
Alignment explanation
Indices: 45714235--45714499 Score: 227
Period size: 46 Copynumber: 5.7 Consensus size: 45
45714225 GCATATCTGT
** * **
45714235 GCCGATGCCATGTCCCAGACATGATCTTACACT-GACACATCTTGTA-
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTAGTTACGTC-TCAAG
* *
45714281 GTCGATGCATGTCCTAGACATGTCTTACACTAGTTTACGTCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG-TTACGTCTCAAG
* * * *
45714327 GCCGATGTATGTCCCAGACATGTCTTTCACTAGTTTACATTTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG-TTACGTCTCAAG
* * * *
45714373 GCCGATGCATGTCCCAAACATGTCTTACACTAG-CACTTGTTTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGTTAC--GTCTCAAG
*
45714419 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-C-TCAT-AATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGTTACGTC-TCAA---G
45714467 GCCGATGCATGTCCCAGACATGTCTTACACTAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG
45714500 CTCACACAAG
Statistics
Matches: 184, Mismatches: 23, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
44 11 0.06
45 20 0.11
46 106 0.58
47 27 0.15
48 20 0.11
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGTTACGTCTCAAG
Done.