Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 152 of 410
Found at i:46114336 original size:15 final size:16
Alignment explanation
Indices: 46114310--46114340 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
46114300 TGAAAAGAAA
46114310 ATGAGAAAAGAAAAAG
1 ATGAGAAAAGAAAAAG
46114326 ATGAG-AAAGAAAAAG
1 ATGAGAAAAGAAAAAG
46114341 CATGTGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06
Consensus pattern (16 bp):
ATGAGAAAAGAAAAAG
Found at i:46117558 original size:29 final size:28
Alignment explanation
Indices: 46117526--46117596 Score: 88
Period size: 29 Copynumber: 2.5 Consensus size: 28
46117516 ATACAAGTCT
** *
46117526 TTAATATGTCTTACCTTAAATTCATGTTA
1 TTAATATGTCTTAAATTAAA-ACATGTTA
*
46117555 TTAATATGTCTTAAAATTAAAACATGTTT
1 TTAATATGTCTT-AAATTAAAACATGTTA
46117584 TTAATATGTCTTA
1 TTAATATGTCTTA
46117597 GTGCAGCCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 1 0.03
29 30 0.81
30 6 0.16
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.48
Consensus pattern (28 bp):
TTAATATGTCTTAAATTAAAACATGTTA
Found at i:46124856 original size:46 final size:46
Alignment explanation
Indices: 46124789--46124964 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
46124779 TGTAACCCGC
* *
46124789 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
46124835 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCGCAT
* * *
46124885 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
46124928 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
46124965 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 63 0.57
47 27 0.24
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:46124909 original size:93 final size:93
Alignment explanation
Indices: 46124797--46124968 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
46124787 GCCCATAAGT
* *
46124797 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
46124862 CGAGTTCGAATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
*
46124890 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
46124955 CGAGTTCGGATGCC
66 CGAGTTCGAATGCC
46124969 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:46126500 original size:8 final size:8
Alignment explanation
Indices: 46126467--46126508 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
46126457 AAAGAAAATA
46126467 AAATAATT
1 AAATAATT
*
46126475 -ATTAATT
1 AAATAATT
* *
46126482 AAACAAGT
1 AAATAATT
46126490 AAATAATT
1 AAATAATT
46126498 AAATAATT
1 AAATAATT
46126506 AAA
1 AAA
46126509 AGAAATGATG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (8 bp):
AAATAATT
Found at i:46127430 original size:13 final size:14
Alignment explanation
Indices: 46127412--46127445 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
46127402 AAATATTCTT
46127412 TTTTAATTTAA-AA
1 TTTTAATTTAATAA
46127425 TTTTAATTTAATTAA
1 TTTTAATTTAA-TAA
46127440 TTTTAA
1 TTTTAA
46127446 AAATAACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
15 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTAATTTAATAA
Found at i:46131336 original size:30 final size:30
Alignment explanation
Indices: 46131295--46131351 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
46131285 CATGAGCTGG
* * *
46131295 CACATAGGCATGTGTTTAGCCCTTGTGTCC
1 CACACAGGCATGTGTCTAGCCCGTGTGTCC
46131325 CACACAGGCATGTGTCTAGCCCGTGTG
1 CACACAGGCATGTGTCTAGCCCGTGTG
46131352 GAAATGCCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.18, C:0.28, G:0.26, T:0.28
Consensus pattern (30 bp):
CACACAGGCATGTGTCTAGCCCGTGTGTCC
Found at i:46133633 original size:14 final size:14
Alignment explanation
Indices: 46133614--46133640 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
46133604 AATACTTAGT
46133614 TTTGTTCTTAATTA
1 TTTGTTCTTAATTA
46133628 TTTGTTCTTAATT
1 TTTGTTCTTAATT
46133641 CTTGGTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTGTTCTTAATTA
Found at i:46148491 original size:40 final size:40
Alignment explanation
Indices: 46148401--46148566 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
46148391 TGAATGATAC
* *
46148401 CCGGGCTAAGTCCCGAAGGCATTTATGCTA--TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
* *
46148440 -CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* *** *
46148479 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
46148519 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
46148559 CC-GGCTAA
1 CCGGGCTAA
46148567 ATTCGAAGAA
Statistics
Matches: 104, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
38 25 0.24
39 11 0.11
40 68 0.65
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:46153530 original size:40 final size:40
Alignment explanation
Indices: 46153500--46153694 Score: 257
Period size: 40 Copynumber: 4.9 Consensus size: 40
46153490 TATGCTGGAA
* * * *
46153500 ATTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAATG
1 ATTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTC
** * * *
46153540 GCTACATCCGGGCTAAGACCCGAAGGCATTCATACGAGTC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
*
46153580 ATTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
*
46153620 ATTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
* *
46153660 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGC
46153695 ACATGGTTAT
Statistics
Matches: 138, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
39 3 0.02
40 135 0.98
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
Found at i:46153708 original size:80 final size:80
Alignment explanation
Indices: 46153504--46153710 Score: 290
Period size: 80 Copynumber: 2.6 Consensus size: 80
46153494 CTGGAAATTA
* * * * *
46153504 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAATGGCTACATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTATATCCGGGCTAAGACCCGAAGGCAT
46153569 TCATACGAGTCATTC
66 TCATACGAGTCATTC
* * ** *
46153584 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTATATCCGGGCTAAGACCCGAAGGCAT
* *
46153649 TCGTGCGAGTCATTC
66 TCATACGAGTCATTC
46153664 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTATATCCGG
46153711 TTATATTCCG
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 1 0.01
80 108 0.99
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.23
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTATATCCGGGCTAAGACCCGAAGGCAT
TCATACGAGTCATTC
Found at i:46159944 original size:40 final size:39
Alignment explanation
Indices: 46159889--46160092 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 39
46159879 TGAATGATAC
* *
46159889 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
*
46159929 CCGGGCTAAGACCCGAAGGCA-TT-CG-TAGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
* *
46159965 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* * *
46160005 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGT--TATAT
* * *
46160045 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTTATAT
46160085 CC-GGCTAA
1 CCGGGCTAA
46160093 ATTCCGAAGA
Statistics
Matches: 140, Mismatches: 16, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
36 27 0.19
37 6 0.04
38 3 0.02
39 10 0.07
40 93 0.66
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
Found at i:46168074 original size:40 final size:39
Alignment explanation
Indices: 46168019--46168225 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 39
46168009 TGAATGATAC
* * *
46168019 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
46168059 CCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
46168098 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * *
46168138 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * **
46168178 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
46168218 CC-GGCTAA
1 CCGGGCTAA
46168226 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 40 0.27
40 104 0.71
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:46168234 original size:79 final size:79
Alignment explanation
Indices: 46168019--46168225 Score: 265
Period size: 79 Copynumber: 2.6 Consensus size: 79
46168009 TGAATGATAC
* * * *
46168019 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTGT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTGT
* *** *
46168084 GCGAGTTGTTATAT
66 GCAAGTTACCAAAT
* *
46168098 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA-TT
46168162 GTGCAAGTTACCAAAT
64 GTGCAAGTTACCAAAT
* *
46168178 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAA
46168226 ATTCCGAAGA
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 2 0.02
79 58 0.53
80 47 0.43
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTGT
GCAAGTTACCAAAT
Found at i:46174971 original size:20 final size:20
Alignment explanation
Indices: 46174946--46174983 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46174936 GTTTATTCGC
*
46174946 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
46174966 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
46174984 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:46176640 original size:27 final size:27
Alignment explanation
Indices: 46176609--46176677 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
46176599 AGCGTAGATC
46176609 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
46176636 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
*
46176663 AC-CAATATACCCCTA
1 ACGAAAT-TACCCCTA
46176678 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 3 0.08
27 37 0.93
ACGTcount: A:0.46, C:0.26, G:0.09, T:0.19
Consensus pattern (27 bp):
ACGAAATTACCCCTAAAGAGCAAAATT
Found at i:46182033 original size:6 final size:6
Alignment explanation
Indices: 46182022--46182053 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
46182012 CTTGATATTC
*
46182022 CCCTTT CCCTTT CCCTTT CCCTTT CTCTTT CC
1 CCCTTT CCCTTT CCCTTT CCCTTT CCCTTT CC
46182054 AATCCCTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (6 bp):
CCCTTT
Found at i:46182883 original size:13 final size:13
Alignment explanation
Indices: 46182865--46182901 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
46182855 GGTATGGTAT
*
46182865 GTTAATTAATTGA
1 GTTAATTAATTCA
*
46182878 GTTAATTAATACA
1 GTTAATTAATTCA
46182891 GTTAATTAATT
1 GTTAATTAATT
46182902 TTTCATACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.46
Consensus pattern (13 bp):
GTTAATTAATTCA
Found at i:46184804 original size:54 final size:54
Alignment explanation
Indices: 46184746--46184858 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
46184736 TTAACACCCT
*
46184746 AGGGGCAAAATGATAATTT-TACCCCACATGGGTATCTCGATAATTCTACCCTAC
1 AGGGGCAAAATGAT-ATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
* *** * * * * *
46184800 AGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAT
1 AGGGGCAAAATGATATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
46184854 AGGGG
1 AGGGG
46184859 TATTTCAGTA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 4 0.08
54 44 0.92
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (54 bp):
AGGGGCAAAATGATATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
Found at i:46184859 original size:54 final size:54
Alignment explanation
Indices: 46184759--46185036 Score: 258
Period size: 54 Copynumber: 5.2 Consensus size: 54
46184749 GGCAAAATGA
* * * * * *
46184759 TAATTTTACCCCACATGGGTATCTCGATAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAG
* * *
46184813 TATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAG
* * *
46184867 TAATTCTACCCTACAGGGGTATTTCGGCAATTCTACCTTACAGGGGTATTTTAG
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAG
** * * * *
46184921 TAATTCTACCCTA-AAGAGGTATTTTAGTATTTCTACCTTACAAGGGTATTTCAG
1 TAATTCTACCCTACAAG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAG
* ** * * * ***
46184975 T-ATTTTA-CAAATCAGGGGTATTTTGGTAATTTTA-TAAACCAGGGGTATTTTAG
1 TAATTCTACCCTA-CAAGGGTATTTCGGTAATTCTACCCTA-CAGGGGTATTTTAG
46185028 TAATTCTAC
1 TAATTCTAC
46185037 AAACCAGGGG
Statistics
Matches: 183, Mismatches: 35, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
52 3 0.02
53 35 0.19
54 145 0.79
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAG
Found at i:46184979 original size:27 final size:27
Alignment explanation
Indices: 46184759--46184976 Score: 240
Period size: 27 Copynumber: 8.1 Consensus size: 27
46184749 GGCAAAATGA
* * * *
46184759 TAATTTTACCCCACATGGGTATCTC-G
1 TAATTCTACCCTACAGGGGTATTTCAG
**
46184785 ATAATTCTACCCTACAGGGGTATTTTGG
1 -TAATTCTACCCTACAGGGGTATTTCAG
* * *
46184813 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
46184840 TAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
46184867 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
46184894 CAATTCTACCTTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
46184921 TAATTCTACCCTAAAGAGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
46184948 TATTTCTACCTTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
46184975 TA
1 TA
46184977 TTTTACAAAT
Statistics
Matches: 162, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 161 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:46185017 original size:27 final size:27
Alignment explanation
Indices: 46184976--46185086 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 27
46184966 GTATTTCAGT
*
46184976 ATTTTACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
* *
46185003 ATTTTATAAACCAGGGGTATTTTAGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
* *
46185030 ATTCTACAAACCAGGGGTATTTTTGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
** *
46185057 ATTTTACTGATC-GAGGGTATTTTGGTA
1 ATTTTACAAACCAG-GGGTATTTTGGTA
46185084 ATT
1 ATT
46185087 CTGTAAATCG
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 71 0.99
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
ATTTTACAAACCAGGGGTATTTTGGTA
Found at i:46185048 original size:80 final size:81
Alignment explanation
Indices: 46184938--46185086 Score: 187
Period size: 80 Copynumber: 1.9 Consensus size: 81
46184928 ACCCTAAAGA
* **
46184938 GGTATTTTAGTATTTCTACCTTACAAGGGTATTTCAGT-ATTTTACAAATC-AGGGGTATTTTGG
1 GGTATTTTAGTAATTCTACCAAACAAGGGTATTTCAGTAATTTTACAAATCGA-GGGTATTTTGG
46185001 TAATTTTATAAACCAGG
65 TAATTTTATAAACCAGG
* ** **
46185018 GGTATTTTAGTAATTCTA-CAAACCAGGGGTATTTTTGTAATTTTACTGATCGAGGGTATTTTGG
1 GGTATTTTAGTAATTCTACCAAA-CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGG
46185082 TAATT
65 TAATT
46185087 CTGTAAATCG
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
79 2 0.03
80 29 0.50
81 26 0.45
82 1 0.02
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (81 bp):
GGTATTTTAGTAATTCTACCAAACAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGT
AATTTTATAAACCAGG
Found at i:46185050 original size:54 final size:54
Alignment explanation
Indices: 46184963--46185088 Score: 157
Period size: 54 Copynumber: 2.4 Consensus size: 54
46184953 CTACCTTACA
* * *
46184963 AGGGTATTTCAGT-ATTTTACAAATCAGGGGTATTTTGGTAATTTTA-TAAACC
1 AGGGTATTTTAGTAATTCTACAAACCAGGGGTATTTTGGTAATTTTACTAAACC
* * * *
46185015 AGGGGTATTTTAGTAATTCTACAAACCAGGGGTATTTTTGTAATTTTACTGATCG
1 A-GGGTATTTTAGTAATTCTACAAACCAGGGGTATTTTGGTAATTTTACTAAACC
*
46185070 AGGGTATTTTGGTAATTCT
1 AGGGTATTTTAGTAATTCT
46185089 GTAAATCGAG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 1 0.02
53 11 0.17
54 47 0.75
55 4 0.06
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTCTACAAACCAGGGGTATTTTGGTAATTTTACTAAACC
Found at i:46185096 original size:27 final size:27
Alignment explanation
Indices: 46184990--46185248 Score: 182
Period size: 27 Copynumber: 9.6 Consensus size: 27
46184980 TACAAATCAG
* *
46184990 GGGTATTTTGGTAATTTTATAAA-CCA
1 GGGTATTTTGGTAATTCTATAAATCGA
* * *
46185016 GGGGTATTTTAGTAATTCTACAAA-CCA
1 -GGGTATTTTGGTAATTCTATAAATCGA
* * *
46185043 GGGGTATTTTTGTAATTTTACT-GATCGA
1 -GGGTATTTTGGTAATTCTA-TAAATCGA
*
46185071 GGGTATTTTGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
*** *
46185098 GGGTAAAATGATAATTCTATAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
*** *
46185125 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
**** *
46185152 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
***
46185179 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
* * * * * *
46185206 GGATATTTGGGTAGTTTTATAAACCGG
1 GGGTATTTTGGTAATTCTATAAATCGA
*
46185233 GGGTACTTTGGTAATT
1 GGGTATTTTGGTAATT
46185249 TTACAACTGG
Statistics
Matches: 192, Mismatches: 37, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 189 0.98
28 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (27 bp):
GGGTATTTTGGTAATTCTATAAATCGA
Found at i:46185248 original size:81 final size:81
Alignment explanation
Indices: 46185068--46185248 Score: 202
Period size: 81 Copynumber: 2.2 Consensus size: 81
46185058 TTTTACTGAT
* * *
46185068 CGAGGGTATTTTGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAA
1 CGAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGATAAAA
* *
46185133 TGGTAATTCTGTAAAT
66 TGGTAATTCTATAAAC
*** * * **
46185149 CGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGAT-ATT
1 CGAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGATAAAA
* *
46185213 TGGGTAGTTTTATAAAC
66 T-GGTAATTCTATAAAC
* *
46185230 CGGGGGTACTTTGGTAATT
1 CGAGGGTAATTTGGTAATT
46185249 TTACAACTGG
Statistics
Matches: 79, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
80 2 0.03
81 77 0.97
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (81 bp):
CGAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGATAAAA
TGGTAATTCTATAAAC
Found at i:46192732 original size:28 final size:28
Alignment explanation
Indices: 46192692--46192748 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
46192682 CATAAACACA
*
46192692 CAGAATTTTCACCCTTTTACCAATCAGT
1 CAGAATTTTCACCCTTTTACAAATCAGT
46192720 CAGAATTTTCACCCTTTTACAAATCAGT
1 CAGAATTTTCACCCTTTTACAAATCAGT
46192748 C
1 C
46192749 TCTAATTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (28 bp):
CAGAATTTTCACCCTTTTACAAATCAGT
Found at i:46196802 original size:49 final size:49
Alignment explanation
Indices: 46196730--46196828 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
46196720 AAGTATAAAC
*
46196730 ACAAAAATTAACCATATGTGTTCCTGTCATCCACAATCTCAATCGGAGA
1 ACAAAAATTAACCATATGTGTTCCTGTCATCCACAATCTCAATAGGAGA
46196779 ACAAAAATTAACCATATGTGTTCCTGTCATCCACAATCTCAATAGGAGA
1 ACAAAAATTAACCATATGTGTTCCTGTCATCCACAATCTCAATAGGAGA
46196828 A
1 A
46196829 TTGAAACATT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.26
Consensus pattern (49 bp):
ACAAAAATTAACCATATGTGTTCCTGTCATCCACAATCTCAATAGGAGA
Found at i:46197086 original size:40 final size:40
Alignment explanation
Indices: 46197037--46197293 Score: 356
Period size: 40 Copynumber: 6.5 Consensus size: 40
46197027 ATCATCAGAT
* * *
46197037 CAACC-AAACACACCAGACAGAAGCTCATAAGAGCTAATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
* *
46197076 CAACCAAAACACGCCACAA-AGAAGCTCATAAAAGCTTATC
1 CAACCAAAACACGCCA-AACAGAAGCTCATAAGAGCTGATC
*
46197116 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGTTGATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
*
46197156 CAATCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
** * *
46197196 CAACTGAAACACACCAAACAGAAGCTCATAAGAGTTGATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
* * *
46197236 CAATCAAAACATGCCAAACAGAAGCTTATAAGAGCTGATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
*
46197276 CAACCGAAACACGCCAAA
1 CAACCAAAACACGCCAAA
46197294 TAAAAAGTAT
Statistics
Matches: 191, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
39 7 0.04
40 183 0.96
41 1 0.01
ACGTcount: A:0.46, C:0.28, G:0.14, T:0.12
Consensus pattern (40 bp):
CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
Found at i:46198295 original size:23 final size:23
Alignment explanation
Indices: 46198262--46198307 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
46198252 TACTTATTAA
46198262 TTAATTAATTAATATTAAAATAT
1 TTAATTAATTAATATTAAAATAT
*
46198285 TTAATTTATTAATATTAAAATAT
1 TTAATTAATTAATATTAAAATAT
46198308 ATCATATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAATTAATTAATATTAAAATAT
Found at i:46199742 original size:21 final size:21
Alignment explanation
Indices: 46199718--46199765 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
46199708 TATTTTGTTT
46199718 ATTTTGTTCATTTGTAACTTG
1 ATTTTGTTCATTTGTAACTTG
* * *
46199739 ATTTAGTTCCTTTGTAATTTG
1 ATTTTGTTCATTTGTAACTTG
46199760 ACTTTT
1 A-TTTT
46199766 AGAGTTAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.19, C:0.10, G:0.12, T:0.58
Consensus pattern (21 bp):
ATTTTGTTCATTTGTAACTTG
Found at i:46206793 original size:39 final size:40
Alignment explanation
Indices: 46206738--46206908 Score: 224
Period size: 39 Copynumber: 4.3 Consensus size: 40
46206728 GGACTAAGAT
* *
46206738 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
46206777 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
* *
46206816 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
* * * *
46206856 CCGAAGGCATTCGTGTGAGTTACTATAA-CCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTAATA-AATCC-GGGTTAAGTC
46206896 CCGAAGGCATTTG
1 CCGAAGGCATTTG
46206909 AGCTAGTCGT
Statistics
Matches: 121, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 73 0.60
40 41 0.34
41 7 0.06
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
Found at i:46215042 original size:32 final size:32
Alignment explanation
Indices: 46215005--46215072 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
46214995 GCTAAATTTC
* * * *
46215005 TAATCAATTCTAATTTCTTTAAGGGTTTGTAT
1 TAATCAATCCTAATTTCTTCAAGGATTTATAT
*
46215037 TAATCAATCCTATTTTCTTCAAGGATTTATAT
1 TAATCAATCCTAATTTCTTCAAGGATTTATAT
46215069 TAAT
1 TAAT
46215073 TATCTTCTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.49
Consensus pattern (32 bp):
TAATCAATCCTAATTTCTTCAAGGATTTATAT
Found at i:46221791 original size:16 final size:15
Alignment explanation
Indices: 46221769--46221814 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
46221759 AAAAAACACA
46221769 ATTGTTCTAAATA-G
1 ATTGTTCTAAATATG
46221783 AAGTTGTTCTAAATTATG
1 -A-TTGTTCTAAA-TATG
46221801 ATTGTTCTAAATAT
1 ATTGTTCTAAATAT
46221815 AGCTATTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.14
16 20 0.71
17 3 0.11
18 1 0.04
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.46
Consensus pattern (15 bp):
ATTGTTCTAAATATG
Found at i:46222691 original size:23 final size:23
Alignment explanation
Indices: 46222665--46222730 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
46222655 GATAATTAAG
46222665 GAATACTGATGTGTGTAATATGT
1 GAATACTGATGTGTGTAATATGT
* **
46222688 GAATTCT-AT-AAT-T-A-A-G-
1 GAATACTGATGTGTGTAATATGT
46222704 GAATACTGATGTGTGTAATATGT
1 GAATACTGATGTGTGTAATATGT
46222727 GAAT
1 GAAT
46222731 TCTAACAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 14
0.60 0.12 0.28
Matches are distributed among these distances:
16 6 0.20
17 3 0.10
18 2 0.07
19 2 0.07
20 2 0.07
21 2 0.07
22 3 0.10
23 10 0.33
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (23 bp):
GAATACTGATGTGTGTAATATGT
Found at i:46222699 original size:39 final size:39
Alignment explanation
Indices: 46222656--46222734 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
46222646 GAATGCAAAG
46222656 ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
1 ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
46222695 ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
1 ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
46222734 A
1 A
46222735 ACAAATAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.37, C:0.05, G:0.20, T:0.38
Consensus pattern (39 bp):
ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
Found at i:46226496 original size:28 final size:27
Alignment explanation
Indices: 46226433--46226502 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
46226423 ATAGTGAGTC
46226433 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
46226460 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
46226488 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46226503 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:46234319 original size:28 final size:27
Alignment explanation
Indices: 46234256--46234325 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
46234246 ATAGTGAGTC
46234256 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
46234283 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
46234311 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46234326 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:46240222 original size:47 final size:48
Alignment explanation
Indices: 46240105--46240226 Score: 165
Period size: 48 Copynumber: 2.6 Consensus size: 48
46240095 GTGCGAATGA
* * *
46240105 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATCTCAGAGAGAAGT
* * * *
46240153 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA-CTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATCTCAGAGAGAAGT
*
46240200 TACCTTGATTTGGCTACAGGCCATGGT
1 TACCTTGATTTGGCTACGGGCCATGGT
46240227 TTAGCAACTT
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 32 0.49
48 33 0.51
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (48 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTATCTCAGAGAGAAGT
Found at i:46248886 original size:205 final size:205
Alignment explanation
Indices: 46248534--46248945 Score: 752
Period size: 205 Copynumber: 2.0 Consensus size: 205
46248524 TGCCCGTGTC
46248534 CATAAACCGTGTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
1 CATAAACCGTGTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
* *
46248599 GACGTTAGCAATCCTTAAGGGCTACACGGCCAAGGCACACGCCCTTGTGCTAGACCCTGCCCTTC
66 GACGTCAGCAATCCTTAAGGGCCACACGGCCAAGGCACACGCCCTTGTGCTAGACCCTGCCCTTC
* *
46248664 ACATGGCTGAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
131 ACACGGCTAAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
46248729 TTTTTATGTG
196 TTTTTATGTG
* *
46248739 CATAAACTGTGTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTTC
1 CATAAACCGTGTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
*
46248804 GACGTCAGCAATCCTTAAGGGCCATACGGCCAAGGCACACGCCCTTGTGCTAGACCCTGCCCTTC
66 GACGTCAGCAATCCTTAAGGGCCACACGGCCAAGGCACACGCCCTTGTGCTAGACCCTGCCCTTC
*
46248869 ACACGGCTAAGGCACACGGCAGTGTCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
131 ACACGGCTAAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
46248934 TTTTTATGTG
196 TTTTTATGTG
46248944 CA
1 CA
46248946 GGGGACACAC
Statistics
Matches: 199, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
205 199 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (205 bp):
CATAAACCGTGTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
GACGTCAGCAATCCTTAAGGGCCACACGGCCAAGGCACACGCCCTTGTGCTAGACCCTGCCCTTC
ACACGGCTAAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
TTTTTATGTG
Found at i:46250390 original size:37 final size:37
Alignment explanation
Indices: 46250339--46250429 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
46250329 TTATTACGAA
46250339 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
46250376 GTCTTACCCTGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
46250413 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
46250430 TTTCCAAGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 45 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:46250634 original size:49 final size:49
Alignment explanation
Indices: 46250516--46250851 Score: 595
Period size: 49 Copynumber: 6.9 Consensus size: 49
46250506 CACACATATA
46250516 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--ACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
* * *
46250563 TTTCACATTCATCGCATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
46250612 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
* *
46250661 TTTCTCATTCATCACATCGGCCATTAGGCCATATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
46250710 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
46250759 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
46250808 TTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
46250852 TATCTCATAC
Statistics
Matches: 275, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 41 0.15
49 234 0.85
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
Found at i:46261465 original size:46 final size:46
Alignment explanation
Indices: 46261415--46261590 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
46261405 TGGTTGAGCA
46261415 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
46261461 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
46261506 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
46261554 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46261591 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:46261571 original size:93 final size:93
Alignment explanation
Indices: 46261412--46261583 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
46261402 GGATGGTTGA
* *
46261412 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46261477 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
46261505 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46261570 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
46261584 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46269366 original size:13 final size:13
Alignment explanation
Indices: 46269348--46269374 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46269338 TAAAAAATGT
46269348 AAAAATCATTAAA
1 AAAAATCATTAAA
46269361 AAAAATCATTAAA
1 AAAAATCATTAAA
46269374 A
1 A
46269375 TCACTTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAAATCATTAAA
Found at i:46273880 original size:39 final size:40
Alignment explanation
Indices: 46273755--46273935 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
46273745 GCTACTCGTT
** * *
46273755 CAAATGCCTTCGAAACATAGCCC-GGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATT-TAGTAACTCGCA
* * *
46273795 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* *
46273835 C-CATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* * *
46273873 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATTTAGTAAC-TCGCA
46273914 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
46273936 GGACATCATT
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 24 0.20
39 19 0.16
40 61 0.52
41 14 0.12
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
Found at i:46273901 original size:78 final size:80
Alignment explanation
Indices: 46273783--46273935 Score: 204
Period size: 78 Copynumber: 1.9 Consensus size: 80
46273773 AGCCCGGTTA
* * * *
46273783 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCACCATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTTAATAACTTAGCACAAAGCCTTCGG
46273847 G-CTTAGCCCAGAAT
66 GACTTAGCCCAGAAT
** * *
46273861 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCAGATTTAGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGATTTAATAACTTAGCACAAAGCCTTCG
46273925 GGACTTAGCCC
65 GGACTTAGCCC
46273936 GGACATCATT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 3 0.05
78 38 0.59
79 15 0.23
80 8 0.12
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTTAATAACTTAGCACAAAGCCTTCGG
GACTTAGCCCAGAAT
Found at i:46274157 original size:122 final size:122
Alignment explanation
Indices: 46273940--46274184 Score: 463
Period size: 122 Copynumber: 2.0 Consensus size: 122
46273930 TAGCCCGGAC
* *
46273940 ATCATTCGAATAACCATGCACATTTGTCAATAAATCATGACACATTCGTATTTTATTTTCGTTAG
1 ATCATTCGAATAACCATGCACATTTATCAATAAATCATGACACATTCGTATTTCATTTTCGTTAG
46274005 CAAAACTCTAACACGAGCACTTATCACACTTGCAATTTGACTCAATAGCCACACACA
66 CAAAACTCTAACACGAGCACTTATCACACTTGCAATTTGACTCAATAGCCACACACA
46274062 ATCATTCGAATAACCATGCACATTTATCAATAAATCATGACACATTCGTATTTCATTTTCGTTAG
1 ATCATTCGAATAACCATGCACATTTATCAATAAATCATGACACATTCGTATTTCATTTTCGTTAG
*
46274127 CAAAACTCTAACACGAGCACTTATCACACTTGCAATTTGGCTCAATAGCCACACACA
66 CAAAACTCTAACACGAGCACTTATCACACTTGCAATTTGACTCAATAGCCACACACA
46274184 A
1 A
46274185 AGAGCATGAT
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 120 1.00
ACGTcount: A:0.36, C:0.25, G:0.10, T:0.30
Consensus pattern (122 bp):
ATCATTCGAATAACCATGCACATTTATCAATAAATCATGACACATTCGTATTTCATTTTCGTTAG
CAAAACTCTAACACGAGCACTTATCACACTTGCAATTTGACTCAATAGCCACACACA
Found at i:46282071 original size:77 final size:80
Alignment explanation
Indices: 46281964--46282144 Score: 212
Period size: 77 Copynumber: 2.3 Consensus size: 80
46281954 GCTACTCGTT
* **
46281964 CAAATGCCTTCGGGACATAGCCC-TTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
46282026 GATTTAATAAC-TCGCA
64 GATTTAATAACTTAGCA
* * **
46282042 CCATGCCTTC-GG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
46282105 TTTAGTCACTTAGCA
66 TTTAATAACTTAGCA
46282120 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
46282145 CATCATTCGA
Statistics
Matches: 85, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
75 7 0.08
76 6 0.07
77 45 0.53
78 14 0.16
79 2 0.02
80 11 0.13
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCA
Found at i:46282104 original size:40 final size:40
Alignment explanation
Indices: 46281964--46282144 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
46281954 GCTACTCGTT
*
46281964 CAAATGCCTTCGGGACATAGCCC---TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
46282002 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
46282042 C-CATGCCTTC-GG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
46282079 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
46282120 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46282145 CATCATTCGA
Statistics
Matches: 122, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
37 23 0.19
38 33 0.27
39 8 0.07
40 45 0.37
41 13 0.11
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46290236 original size:50 final size:50
Alignment explanation
Indices: 46289992--46290306 Score: 186
Period size: 46 Copynumber: 6.7 Consensus size: 50
46289982 TTTGTGCCCT
* *
46289992 AGTGTAAGA-CATGT-CTAGGACAT-GCATCAGCCACATT--ATGA-GAGCC
1 AGTGTAAGACCATGTCCTAGGACATGGCATC-GGCAC-TTGAAGGATGAGCC
* * * * *
46290038 AGTGTAAGACCATGT-CTGGGACATGGCATTGGCA-TTG-AGACAAGAGCT
1 AGTGTAAGACCATGTCCTAGGACATGGCATCGGCACTTGAAG-GATGAGCC
* * *
46290086 AGTGTAAGA-CATGT-CTGGGACAT-GCATCAGC-CTCG-A-GATGTAAGCC
1 AGTGTAAGACCATGTCCTAGGACATGGCATCGGCACTTGAAGGATG--AGCC
* **
46290132 AGTGTAAGA-CATGT-CT-GAGACAT-GCATCGGCTAC--G-A-GATGTGTA
1 AGTGTAAGACCATGTCCTAG-GACATGGCATCGGC-ACTTGAAGGATGAGCC
*
46290176 AGTGTAAGACCATGTCCT-GGACATGGCATCGGCACGGTT-AAGTGA-GAGCT
1 AGTGTAAGACCATGTCCTAGGACATGGCATCGGCAC--TTGAAG-GATGAGCC
*
46290226 AGTGTAAGACCATGT-CTAGGACATGGCATC-G-ACTTGACGGATGAGCC
1 AGTGTAAGACCATGTCCTAGGACATGGCATCGGCACTTGAAGGATGAGCC
*
46290273 AGTGTAAGACCATG-CCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCCTAGGACATGGCATCGGCA
46290307 TTACACCCTA
Statistics
Matches: 220, Mismatches: 22, Indels: 51
0.75 0.08 0.17
Matches are distributed among these distances:
44 12 0.05
45 15 0.07
46 71 0.32
47 65 0.30
48 21 0.10
49 5 0.02
50 29 0.13
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.22
Consensus pattern (50 bp):
AGTGTAAGACCATGTCCTAGGACATGGCATCGGCACTTGAAGGATGAGCC
Found at i:46290303 original size:47 final size:47
Alignment explanation
Indices: 46290033--46290303 Score: 220
Period size: 46 Copynumber: 5.8 Consensus size: 47
46290023 CACATTATGA
* * * *
46290033 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGAGAT
* * *
46290081 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATG-T
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGA-GAT
* * *
46290127 AAGCCAGTGTAAGA-CATGTCTGAGACAT-GCATCGGC-T-ACGAGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA-GAGAT
* ** * *
46290171 GTGTAAGTGTAAGACCATGTCCT-GGACATGGCATCGGCACGGTTAAGTGA-
1 GAGCCAGTGTAAGACCATGT-CTGGGACATGGCATC-G-AC--TTGAGAGAT
* *
46290221 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGACG-GAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA-GAGAT
*
46290268 GAGCCAGTGTAAGACCATGCCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
46290304 GCATTACACC
Statistics
Matches: 182, Mismatches: 25, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
43 2 0.01
44 13 0.07
45 12 0.07
46 51 0.28
47 51 0.28
48 16 0.09
49 3 0.02
50 29 0.16
51 4 0.02
52 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAGAT
Found at i:46297592 original size:47 final size:47
Alignment explanation
Indices: 46297520--46297648 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 47
46297510 TCATTTGTGC
*
46297520 GCTAGTGTAAGACATGTATGGGACATGCATCGGCCACATT-ATGAGA
1 GCTAGTGTAAGACATGTATGGGACATGCATCGGCCACATTAACGAGA
* *
46297566 GCTAGTGTAAGACCATGTTTGGGACATGGCAT-TG--ACATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTATGGGACAT-GCATCGGCCACATT-A-ACGAGA
*
46297614 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 GCTAGTGTAAGACATGTATGGGACATGCATCGGCC
46297649 TCGAGACGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
45 5 0.07
46 16 0.23
47 28 0.40
48 21 0.30
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTATGGGACATGCATCGGCCACATTAACGAGA
Found at i:46299271 original size:33 final size:33
Alignment explanation
Indices: 46299233--46299299 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
46299223 TGATCAAGTC
46299233 TTGGTGACTCGAAAACGATTGTACGCATGTGGT
1 TTGGTGACTCGAAAACGATTGTACGCATGTGGT
46299266 TTGGTGACTCGAAAACGATTGTACGCATGTGGT
1 TTGGTGACTCGAAAACGATTGTACGCATGTGGT
46299299 T
1 T
46299300 AAGTATGGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (33 bp):
TTGGTGACTCGAAAACGATTGTACGCATGTGGT
Found at i:46305148 original size:40 final size:40
Alignment explanation
Indices: 46305103--46305205 Score: 134
Period size: 40 Copynumber: 2.6 Consensus size: 40
46305093 CGGAATACAA
* * *
46305103 CCGGATATAACCACATGCACGAAGGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAAGGCCTTCGGGTATTAGC
* * * *
46305143 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAAGGCCTTCGGGTATTAGC
*
46305183 CCGGATTTAACAACTTGCACGAA
1 CCGGATATAACAACTTGCACGAA
46305206 TCAACAATAA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.21
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAAGGCCTTCGGGTATTAGC
Found at i:46312581 original size:39 final size:40
Alignment explanation
Indices: 46312486--46312692 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 40
46312476 CGGAATACAA
* *
46312486 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
46312526 CCGGATAGAACGACTTGCACAAATGCCTTC-GGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
*
46312565 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
46312605 CCGGATGTGGTC-ACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATAT-AACAACTTGCACGAAT-GCCTTCGGGTCTTAGC
* ** * ** * *
46312645 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
46312685 CCGGATAT
1 CCGGATAT
46312693 CATTCAATTG
Statistics
Matches: 137, Mismatches: 25, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
39 37 0.27
40 96 0.70
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:46312625 original size:79 final size:80
Alignment explanation
Indices: 46312486--46312691 Score: 220
Period size: 79 Copynumber: 2.6 Consensus size: 80
46312476 CGGAATACAA
* * *
46312486 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
46312550 GCCTTC-GGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
46312565 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
46312629 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
46312645 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
46312692 TCATTCAATT
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
78 3 0.03
79 56 0.53
80 46 0.44
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:46321238 original size:43 final size:37
Alignment explanation
Indices: 46321177--46321280 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 37
46321167 CTGGAAATTA
*
46321177 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTAGCT
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGC-AGT---T---T
46321220 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAGTTT
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCAGTTT
46321256 TATCCGGGCTAAGACCCGAGAGGCA
1 TATCCGGGCTAAGACCCGA-AGGCA
46321281 TTATTGTAGC
Statistics
Matches: 57, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
36 20 0.35
37 4 0.07
39 1 0.02
42 6 0.11
43 26 0.46
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (37 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCAGTTT
Found at i:46326953 original size:40 final size:40
Alignment explanation
Indices: 46326887--46327037 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
46326877 AAATTGAATG
* * *
46326887 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
46326926 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
46326966 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
46327006 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
46327038 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:46327051 original size:40 final size:40
Alignment explanation
Indices: 46326924--46327053 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
46326914 ATGCTGGAAA
* * *
46326924 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
46326964 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
46327004 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
46327044 TTATATCCGG
1 TTATATCCGG
46327054 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:46334978 original size:40 final size:40
Alignment explanation
Indices: 46334893--46335043 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
46334883 AATTGAATGA
* * * **
46334893 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
46334933 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
46334974 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
46335013 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
46335044 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:46335057 original size:40 final size:40
Alignment explanation
Indices: 46334930--46335059 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
46334920 ATGCTGGAAA
* * *
46334930 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
46334970 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
46335010 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
46335050 TTATATCCGG
1 TTATATCCGG
46335060 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:46352339 original size:13 final size:13
Alignment explanation
Indices: 46352321--46352355 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
46352311 CGGCTAACCT
46352321 ACATAATTAAATA
1 ACATAATTAAATA
46352334 ACATAATTAAATA
1 ACATAATTAAATA
*
46352347 AAATAATTA
1 ACATAATTA
46352356 TTCATATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:46352634 original size:20 final size:20
Alignment explanation
Indices: 46352565--46352624 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
46352555 AATGAAGAAG
* *
46352565 AAAT-GAGCTGAAATGAGCT
1 AAATCGAGCTCAAGTGAGCT
46352584 AAATTCGAGCTCAAGTGAGCT
1 AAA-TCGAGCTCAAGTGAGCT
46352605 AAATCGAGCTCAAGTGAGCT
1 AAATCGAGCTCAAGTGAGCT
46352625 GATTGAAGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 3 0.08
20 18 0.49
21 16 0.43
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (20 bp):
AAATCGAGCTCAAGTGAGCT
Found at i:46353956 original size:17 final size:19
Alignment explanation
Indices: 46353934--46353970 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
46353924 TATTCCATAA
46353934 TTATATT-T-CTTAATGTT
1 TTATATTATACTTAATGTT
46353951 TTATATTATACTTAATGTT
1 TTATATTATACTTAATGTT
46353970 T
1 T
46353971 GGATTATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 1 0.06
19 10 0.56
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (19 bp):
TTATATTATACTTAATGTT
Found at i:46355173 original size:14 final size:14
Alignment explanation
Indices: 46355154--46355187 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
46355144 TGATTCACTG
*
46355154 AAAATAATTTTTGA
1 AAAATAATTTTTAA
*
46355168 AAAATATTTTTTAA
1 AAAATAATTTTTAA
46355182 AAAATA
1 AAAATA
46355188 GTATGATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (14 bp):
AAAATAATTTTTAA
Found at i:46359647 original size:32 final size:32
Alignment explanation
Indices: 46359611--46359714 Score: 97
Period size: 32 Copynumber: 3.2 Consensus size: 32
46359601 ATGATGGCAG
46359611 CTCTTGAAACCTTCTTTTATGTTTATTTGCAC
1 CTCTTGAAACCTTCTTTTATGTTTATTTGCAC
** * * * *
46359643 CTCTTGACATA-GAT-TTTAAT-TTGATGATGGCAG
1 CTCTTGA-A-ACCTTCTTTTATGTTTAT--TTGCAC
46359676 CTCTTGAAACCTTCTTTTATGTTTATTTGCAC
1 CTCTTGAAACCTTCTTTTATGTTTATTTGCAC
46359708 CTCTTGA
1 CTCTTGA
46359715 CATCATCTTT
Statistics
Matches: 53, Mismatches: 12, Indels: 14
0.67 0.15 0.18
Matches are distributed among these distances:
31 5 0.09
32 25 0.47
33 18 0.34
34 5 0.09
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.46
Consensus pattern (32 bp):
CTCTTGAAACCTTCTTTTATGTTTATTTGCAC
Found at i:46359681 original size:33 final size:31
Alignment explanation
Indices: 46359583--46359684 Score: 82
Period size: 32 Copynumber: 3.2 Consensus size: 31
46359573 CTATTAGAGA
*
46359583 TTGAGAGATTTTAATTTGATGATGGCAGCTC
1 TTGAAAGATTTTAATTTGATGATGGCAGCTC
** * * * *
46359614 TTGAAACCTTCTT--TTATGTTTATTTGCACCTC
1 TTGAAAGATT-TTAATT-TGATGA-TGGCAGCTC
46359646 TTGACATAGATTTTAATTTGATGATGGCAGCTC
1 TTGA-A-AGATTTTAATTTGATGATGGCAGCTC
46359679 TTGAAA
1 TTGAAA
46359685 CCTTCTTTTA
Statistics
Matches: 51, Mismatches: 13, Indels: 14
0.65 0.17 0.18
Matches are distributed among these distances:
30 2 0.04
31 12 0.24
32 14 0.27
33 14 0.27
34 7 0.14
35 2 0.04
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (31 bp):
TTGAAAGATTTTAATTTGATGATGGCAGCTC
Found at i:46359692 original size:65 final size:65
Alignment explanation
Indices: 46359588--46359717 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
46359578 AGAGATTGAG
46359588 AGATTTTAATTTGATGATGGCAGCTCTTGAAACCTTCTTTTATGTTTATTTGCACCTCTTGACAT
1 AGATTTTAATTTGATGATGGCAGCTCTTGAAACCTTCTTTTATGTTTATTTGCACCTCTTGACAT
46359653 AGATTTTAATTTGATGATGGCAGCTCTTGAAACCTTCTTTTATGTTTATTTGCACCTCTTGACAT
1 AGATTTTAATTTGATGATGGCAGCTCTTGAAACCTTCTTTTATGTTTATTTGCACCTCTTGACAT
46359718 CATCTTTGAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.45
Consensus pattern (65 bp):
AGATTTTAATTTGATGATGGCAGCTCTTGAAACCTTCTTTTATGTTTATTTGCACCTCTTGACAT
Found at i:46362793 original size:3 final size:3
Alignment explanation
Indices: 46362785--46362819 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
46362775 CTCTATCTAT
46362785 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
46362820 ATTATTATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:46362824 original size:3 final size:3
Alignment explanation
Indices: 46362818--46362864 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
46362808 CTTCTTCTTC
46362818 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
46362865 TGCTAGCGTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:46382408 original size:27 final size:28
Alignment explanation
Indices: 46382352--46382421 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
46382342 AAACTTGTAC
46382352 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
46382380 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
46382407 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
46382422 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:46382432 original size:27 final size:27
Alignment explanation
Indices: 46382352--46382433 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
46382342 AAACTTGTAC
* *
46382352 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
46382380 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
46382407 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
46382434 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:46385188 original size:50 final size:50
Alignment explanation
Indices: 46385107--46385340 Score: 247
Period size: 50 Copynumber: 4.7 Consensus size: 50
46385097 AAGTCACGTT
*
46385107 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATG
*** * * * * *
46385157 TGTAGTACTAAGTGCAGGCTACTATACGTACCCG-TTAGCTTCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT-G-ATAGGTCACATG
* * * ** *
46385208 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAATTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATG
* *
46385258 TGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGA-ATA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTC-ACATG
* * *
46385308 TGTAGTATTAAGTGCAGGCTACTATGCGTACCA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCA
46385341 AAGAGCTTTG
Statistics
Matches: 150, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
49 2 0.01
50 109 0.73
51 38 0.25
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATG
Found at i:46385275 original size:101 final size:101
Alignment explanation
Indices: 46385100--46385281 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
46385090 CCATTGTAAG
* * * * *
46385100 TCACGTTTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGCAC
46385165 TAAGTGCAGGCTACTATACGTACCCGTTAGCTTCGA
66 TAAGTGCAGGCTACTATACGTACCCGTTAGCTTCGA
* * * *
46385201 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAATTCACGTGTGTAGCAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGCAC
46385266 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
46385282 CGTGTACCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGCAC
TAAGTGCAGGCTACTATACGTACCCGTTAGCTTCGA
Found at i:46386222 original size:180 final size:180
Alignment explanation
Indices: 46385885--46386222 Score: 421
Period size: 180 Copynumber: 1.9 Consensus size: 180
46385875 TCCGAGAGTT
* * * * *
46385885 GTACCATGAGATAAATAATTGTTAGTGAAGAGAGGTCGGAATTGTTAGATAGTGAAACATGGGTA
1 GTACCATGAGATAAATAATTGTTAGTGAAGAGAGATCAGAACTGTCAGATAGTGAAACAAGGGTA
* * ** * *
46385950 TCTTTAACGAATAAAATGTACTAATTGGATAAACAAAAAGTTCTTAAAATTTTATGGTAAGAATA
66 TATTTAACGAATAAAATGTACTAATTGCATAAACAAAAAGTTCAAAAAATTTTATAGTAAGAAGA
* * * *
46386015 TATGTTAGTTTAGTTTTTAGTAAAATTAGCGTTTCTCAATTTGGAGTCCA
131 TATATGAGTCTAGTTTATAGTAAAATTAGCGTTTCTCAATTTGGAGTCCA
* * * *
46386065 GTACCATGATATAAATAATTTTTAGTGAAGAGAGATCAGAGCTGTCAGATAGTGAAATAAGGGTA
1 GTACCATGAGATAAATAATTGTTAGTGAAGAGAGATCAGAACTGTCAGATAGTGAAACAAGGGTA
* * * *
46386130 TATTTAATGAATAAACTGTACTTATT-CACTAGACCAAAAA-TTCAAAAAATTTTATAGTAAGAA
66 TATTTAACGAATAAAATGTACTAATTGCA-TA-AACAAAAAGTTCAAAAAATTTTATAGTAAGAA
46386193 GATATATGAGTCTAGTTTCATAG-AAAATTA
129 GATATATGAGTCTAGTTT-ATAGTAAAATTA
46386223 ACGGATCTTA
Statistics
Matches: 132, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
179 1 0.01
180 121 0.92
181 10 0.08
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.33
Consensus pattern (180 bp):
GTACCATGAGATAAATAATTGTTAGTGAAGAGAGATCAGAACTGTCAGATAGTGAAACAAGGGTA
TATTTAACGAATAAAATGTACTAATTGCATAAACAAAAAGTTCAAAAAATTTTATAGTAAGAAGA
TATATGAGTCTAGTTTATAGTAAAATTAGCGTTTCTCAATTTGGAGTCCA
Found at i:46388681 original size:16 final size:17
Alignment explanation
Indices: 46388652--46388688 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
46388642 AAAATCCTAG
46388652 CTTTTTCTCCTTTCTTT
1 CTTTTTCTCCTTTCTTT
*
46388669 CTTTTT-TCTTTTCTTT
1 CTTTTTCTCCTTTCTTT
46388685 CTTT
1 CTTT
46388689 CCTTCTCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
CTTTTTCTCCTTTCTTT
Found at i:46388770 original size:5 final size:5
Alignment explanation
Indices: 46388760--46388808 Score: 91
Period size: 5 Copynumber: 10.0 Consensus size: 5
46388750 GTTTTATTAT
46388760 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATAT- ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
46388809 TATTTATACT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.09
5 39 0.91
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:46388859 original size:15 final size:15
Alignment explanation
Indices: 46388757--46388859 Score: 70
Period size: 15 Copynumber: 6.7 Consensus size: 15
46388747 TTTGTTTTAT
46388757 TATATA-TAATATAA
1 TATATATTAATATAA
46388771 TATA-ATATAATATAA
1 TATATAT-TAATATAA
46388786 TATAATATAATATATATAA
1 TAT-ATAT--TA-ATATAA
*
46388805 TATATATT--TATACT
1 TATATATTAATATA-A
* *
46388819 TATATGTTAAGTAAAA
1 TATATATTAA-TATAA
* *
46388835 GATATTTTAATATAA
1 TATATATTAATATAA
46388850 TATATATTAA
1 TATATATTAA
46388860 ATTCAAAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 19
0.71 0.09 0.19
Matches are distributed among these distances:
13 5 0.07
14 11 0.16
15 23 0.33
16 10 0.14
17 5 0.07
18 7 0.10
19 9 0.13
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (15 bp):
TATATATTAATATAA
Found at i:46389016 original size:16 final size:17
Alignment explanation
Indices: 46388987--46389023 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
46388977 AAAATCCTAG
46388987 CTTTTTCTCCTTTCTTT
1 CTTTTTCTCCTTTCTTT
*
46389004 CTTTTT-TCTTTTCTTT
1 CTTTTTCTCCTTTCTTT
46389020 CTTT
1 CTTT
46389024 CCTTCTCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
CTTTTTCTCCTTTCTTT
Found at i:46389115 original size:5 final size:5
Alignment explanation
Indices: 46389095--46389139 Score: 72
Period size: 5 Copynumber: 9.0 Consensus size: 5
46389085 GTTTTATTAT
**
46389095 ATATA ATATA GCATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
46389140 TATTTATACT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:46389190 original size:15 final size:15
Alignment explanation
Indices: 46389092--46389190 Score: 66
Period size: 15 Copynumber: 6.7 Consensus size: 15
46389082 TTTGTTTTAT
46389092 TATATA-TAATATAGCA
1 TATATATTAATATA--A
46389108 TA-ATA-TAATATAA
1 TATATATTAATATAA
46389121 TATA-ATATAATATAA
1 TATATAT-TAATATAA
*
46389136 TATATATT--TATACT
1 TATATATTAATATA-A
* *
46389150 TATATGTTAAGTAAAA
1 TATATATTAA-TATAA
* *
46389166 GATATTTTAATATAA
1 TATATATTAATATAA
46389181 TATATATTAA
1 TATATATTAA
46389191 ATTCAAAAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
13 8 0.12
14 8 0.12
15 35 0.53
16 12 0.18
17 3 0.05
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (15 bp):
TATATATTAATATAA
Found at i:46389348 original size:16 final size:17
Alignment explanation
Indices: 46389319--46389355 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
46389309 AAAATCCTAG
46389319 CTTTTTCTCCTTTCTTT
1 CTTTTTCTCCTTTCTTT
*
46389336 CTTTTT-TCTTTTCTTT
1 CTTTTTCTCCTTTCTTT
46389352 CTTT
1 CTTT
46389356 CCTTCTCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
CTTTTTCTCCTTTCTTT
Found at i:46389366 original size:332 final size:332
Alignment explanation
Indices: 46388573--46389916 Score: 2288
Period size: 317 Copynumber: 4.0 Consensus size: 332
46388563 TAATACCGGG
46388573 ATTCCAAAAACATAAAAATTATAAGAAAAGGGGACTAAATTGACTTACCAATTGAGCTTGGAACC
1 ATTCCAAAAACATAAAAATTATAAGAAAAGGGGACTAAATTGACTTACCAATTGAGCTTGGAACC
*
46388638 CTTGAAAATCCTAGCTTTTTCTCCTTTCTTTCTTTTTTCTTTTCTTTCTTTCCTTCTCTATTTCG
66 CTTGAAAATCCTAGCTTTTTCTCCTTTCTTTCTTTTTTCTTTTCTTTCTTTCCTTCTCTGTTTCG
46388703 TTTCTGCTTTAGCTTTCTTTTTCTATTTATTTATTCTTTCTTTATTTGTTTTATTATATATAATA
131 TTTCTGCTTTAGCTTTCTTTTTCTATTTATTTATTCTTTCTTTATTTGTTTTATTATATATAATA
**
46388768 TAATATAATATAATATAATATAATATAATATATATAATATATATTTATACTTATATGTTAAGTAA
196 TAGCATAATATAATATAATAT-A-AT-ATA-ATATAATATATATTTATACTTATATGTTAAGTAA
46388833 AAGATATTTTAATATAATATATATTAAATTC-AAAAAAATCTTCCTTATGCCGCCTCATTTATGA
257 AAGATATTTTAATATAATATATATTAAATTCAAAAAAAATCTTCCTTATGCCGCCTCATTTATGA
46388897 GCAATGGCATA
322 GCAATGGCATA
46388908 ATTCCAAAAACATAAAAATTATAAGAAAAGGGGACTAAATTGACTTACCAATTGAGCTTGGAACC
1 ATTCCAAAAACATAAAAATTATAAGAAAAGGGGACTAAATTGACTTACCAATTGAGCTTGGAACC
46388973 CTTGAAAATCCTAGCTTTTTCTCCTTTCTTTCTTTTTTCTTTTCTTTCTTTCCTTCTCTGTTTCG
66 CTTGAAAATCCTAGCTTTTTCTCCTTTCTTTCTTTTTTCTTTTCTTTCTTTCCTTCTCTGTTTCG
46389038 TTTCTGCTTTAGCTTTCTTTTTCTATTTATTTATTCTTTCTTTATTTGTTTTATTATATATAATA
131 TTTCTGCTTTAGCTTTCTTTTTCTATTTATTTATTCTTTCTTTATTTGTTTTATTATATATAATA
46389103 TAGCATAATATAATATAATATAATATAATATAATATATATTTATACTTATATGTTAAGTAAAAGA
196 TAGCATAATATAATATAATATAATATAATATAATATATATTTATACTTATATGTTAAGTAAAAGA
46389168 TATTTTAATATAATATATATTAAATTCAAAAAAAATCTTCCTTATGCCGCCTCATTTATGAGCAA
261 TATTTTAATATAATATATATTAAATTCAAAAAAAATCTTCCTTATGCCGCCTCATTTATGAGCAA
46389233 TGGCATA
326 TGGCATA
46389240 ATTCCAAAAACATAAAAATTATAAGAAAAGGGGACTAAATTGACTTACCAATTGAGCTTGGAACC
1 ATTCCAAAAACATAAAAATTATAAGAAAAGGGGACTAAATTGACTTACCAATTGAGCTTGGAACC
46389305 CTTGAAAATCCTAGCTTTTTCTCCTTTCTTTCTTTTTTCTTTTCTTTCTTTCCTTCTCTGTTTCG
66 CTTGAAAATCCTAGCTTTTTCTCCTTTCTTTCTTTTTTCTTTTCTTTCTTTCCTTCTCTGTTTCG
46389370 TTTCTGCTTTAGCTTTCTTTTTCTATTTATTTATTCTTTCTTTATTTGTTTTATTATATATAATA
131 TTTCTGCTTTAGCTTTCTTTTTCTATTTATTTATTCTTTCTTTATTTGTTTTATTATATATAATA
46389435 TAGC---------------ATAATATAATATAATATATATTTATACTTATATGTTAAGTAAAAGA
196 TAGCATAATATAATATAATATAATATAATATAATATATATTTATACTTATATGTTAAGTAAAAGA
46389485 TATTTTAATATAATATATATTAAATTCAAAAAAAATCTTCCTTATGCCGCCTCATTTATGAGCAA
261 TATTTTAATATAATATATATTAAATTCAAAAAAAATCTTCCTTATGCCGCCTCATTTATGAGCAA
46389550 TGGCATA
326 TGGCATA
46389557 ATTCCAAAAACATAAAAATTATAAGAAAAGGGGACTAAATTGACTTACCAATTGAGCTTGGAACC
1 ATTCCAAAAACATAAAAATTATAAGAAAAGGGGACTAAATTGACTTACCAATTGAGCTTGGAACC
46389622 CTTGAAAATCCTAGCTTTTTCTCCTTTCTTTCTTTTTTCTTTTCTTTCTTTCCTTCTCTGTTTCG
66 CTTGAAAATCCTAGCTTTTTCTCCTTTCTTTCTTTTTTCTTTTCTTTCTTTCCTTCTCTGTTTCG
46389687 TTTCTGCTTTAGCTTTCTTTTTCTATTTATTTATTCTTTCTTTATTTGTTTTATTATATATAATA
131 TTTCTGCTTTAGCTTTCTTTTTCTATTTATTTATTCTTTCTTTATTTGTTTTATTATATATAATA
46389752 TAGCATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATATAT
196 TAGC-------------------------ATAATATAATATAATATAATATAATATAATATATAT
46389817 TTATACTTATATGTTAAGTAAAAGATATTTTAATATAATATATATTAAATTCAAAAAAAATCTTC
236 TTATACTTATATGTTAAGTAAAAGATATTTTAATATAATATATATTAAATTCAAAAAAAATCTTC
46389882 CTTATGCCGCCTCATTTATGAGCAATGGCATA
301 CTTATGCCGCCTCATTTATGAGCAATGGCATA
46389914 ATT
1 ATT
46389917 GCTTTTTAGC
Statistics
Matches: 965, Mismatches: 3, Indels: 60
0.94 0.00 0.06
Matches are distributed among these distances:
317 317 0.33
331 65 0.07
332 246 0.25
333 2 0.00
334 1 0.00
335 213 0.22
357 121 0.13
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (332 bp):
ATTCCAAAAACATAAAAATTATAAGAAAAGGGGACTAAATTGACTTACCAATTGAGCTTGGAACC
CTTGAAAATCCTAGCTTTTTCTCCTTTCTTTCTTTTTTCTTTTCTTTCTTTCCTTCTCTGTTTCG
TTTCTGCTTTAGCTTTCTTTTTCTATTTATTTATTCTTTCTTTATTTGTTTTATTATATATAATA
TAGCATAATATAATATAATATAATATAATATAATATATATTTATACTTATATGTTAAGTAAAAGA
TATTTTAATATAATATATATTAAATTCAAAAAAAATCTTCCTTATGCCGCCTCATTTATGAGCAA
TGGCATA
Found at i:46389665 original size:16 final size:17
Alignment explanation
Indices: 46389636--46389672 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
46389626 AAAATCCTAG
46389636 CTTTTTCTCCTTTCTTT
1 CTTTTTCTCCTTTCTTT
*
46389653 CTTTTT-TCTTTTCTTT
1 CTTTTTCTCCTTTCTTT
46389669 CTTT
1 CTTT
46389673 CCTTCTCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
CTTTTTCTCCTTTCTTT
Found at i:46389764 original size:5 final size:5
Alignment explanation
Indices: 46389744--46389813 Score: 122
Period size: 5 Copynumber: 14.0 Consensus size: 5
46389734 GTTTTATTAT
**
46389744 ATATA ATATA GCATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
46389794 ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA
46389814 TATTTATACT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 61 1.00
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:46389864 original size:15 final size:15
Alignment explanation
Indices: 46389738--46389864 Score: 95
Period size: 15 Copynumber: 8.4 Consensus size: 15
46389728 TTATTTGTTT
46389738 TATTATATATAATATA
1 TATTA-ATATAATATA
*
46389754 GCA-TAATATAATATA
1 -TATTAATATAATATA
46389769 -ATATAATATAATATA
1 TAT-TAATATAATATA
46389784 -ATATAATATAATATA
1 TAT-TAATATAATATA
46389799 -ATATAATATAATATA
1 TAT-TAATATAATATA
*
46389814 TATT--TATACTTATA
1 TATTAATATA-ATATA
* * *
46389828 TGTTAAGTAAAAGATA
1 TATTAA-TATAATATA
*
46389844 TTTTAATATAATATA
1 TATTAATATAATATA
46389859 TATTAA
1 TATTAA
46389865 ATTCAAAAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 16
0.78 0.08 0.13
Matches are distributed among these distances:
13 5 0.05
14 7 0.08
15 65 0.70
16 12 0.13
17 4 0.04
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (15 bp):
TATTAATATAATATA
Found at i:46390559 original size:35 final size:35
Alignment explanation
Indices: 46390513--46390579 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
46390503 TTACAATATC
46390513 GAGAAACACATAGGTGTTAAACAAGGCACAAAAGT
1 GAGAAACACATAGGTGTTAAACAAGGCACAAAAGT
*
46390548 GAGAAACACATAGGTGTTAAACAATGCACAAA
1 GAGAAACACATAGGTGTTAAACAAGGCACAAA
46390580 TGTGCATTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.49, C:0.15, G:0.21, T:0.15
Consensus pattern (35 bp):
GAGAAACACATAGGTGTTAAACAAGGCACAAAAGT
Found at i:46390682 original size:40 final size:38
Alignment explanation
Indices: 46390573--46390685 Score: 100
Period size: 40 Copynumber: 2.8 Consensus size: 38
46390563 GTTAAACAAT
* * *
46390573 GCACAAATGTGCATTCAGGGCATCGTAATGCCAACAAGA
1 GCACAAATGTG-TTTCAGGGCATCGTAGTGCTAACAAGA
* ** * * *
46390612 ACATGAATATGTTATCAGGAGCACCATAGTGCTAACAAGA
1 GCACAAATGTGTT-TCAGG-GCATCGTAGTGCTAACAAGA
46390652 GCACAAATGTGTTGTCAAGGGCATCGTAGTGCTA
1 GCACAAATGTGTT-TC-AGGGCATCGTAGTGCTA
46390686 TCTGGAGTAC
Statistics
Matches: 55, Mismatches: 16, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
38 1 0.02
39 12 0.22
40 39 0.71
41 3 0.05
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (38 bp):
GCACAAATGTGTTTCAGGGCATCGTAGTGCTAACAAGA
Found at i:46398619 original size:27 final size:27
Alignment explanation
Indices: 46398573--46398689 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 27
46398563 TCATACACAT
* * *
46398573 GTCATTTTACCTTACCGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTTCA
46398600 GTCATTTTACCCTACAGGGGTATTTCA
1 GTCATTTTACCCTACAGGGGTATTTCA
* * * *
46398627 ATCATTCTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTTCA
* *
46398654 GTCATTTTACCCTA-TGAGGGTATTTCG
1 GTCATTTTACCCTACAG-GGGTATTTCA
46398681 GTCATTTTA
1 GTCATTTTA
46398690 TCATATAAGG
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 78 0.99
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTTCA
Found at i:46398714 original size:27 final size:27
Alignment explanation
Indices: 46398681--46398808 Score: 168
Period size: 27 Copynumber: 4.7 Consensus size: 27
46398671 GGGTATTTCG
* *
46398681 GTCATTTTATCATATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGAAAAATC
* * * *
46398708 ATTATTTTATCATATAAAGGAAAAATC
1 GTCATTTTATCACATAAGGGAAAAATC
46398735 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGAAAAATC
*
46398762 GTCATTTTATCACATAA-GTACAAAATC
1 GTCATTTTATCACATAAGGGA-AAAATC
*
46398789 GTCATTTTATCACATGAGGG
1 GTCATTTTATCACATAAGGG
46398809 TTCAGGTATG
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.02
27 85 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGAAAAATC
Found at i:46407675 original size:21 final size:21
Alignment explanation
Indices: 46407649--46407702 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
46407639 CATAAGTGCT
46407649 AACAGAAACCCATAGGAGTTG
1 AACAGAAACCCATAGGAGTTG
*
46407670 AACAGAAACTCATAGGAGTTG
1 AACAGAAACCCATAGGAGTTG
46407691 AACTA-AAACCCA
1 AAC-AGAAACCCA
46407703 GAAGGGTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 29 0.97
22 1 0.03
ACGTcount: A:0.46, C:0.20, G:0.19, T:0.15
Consensus pattern (21 bp):
AACAGAAACCCATAGGAGTTG
Found at i:46407755 original size:41 final size:42
Alignment explanation
Indices: 46407674--46407760 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 42
46407664 GAGTTGAACA
* * *
46407674 GAAACTCATAGGAGTTGAACTAAAACCCAGAAGGGTTAAATT
1 GAAACTCATAGGAGTTGAACTAAAACCCAGAAGAGCTAAATG
* *
46407716 GAAACTCATATGAGTTG-ACTAAAACTCATG-AGAGCTAAATG
1 GAAACTCATAGGAGTTGAACTAAAACCCA-GAAGAGCTAAATG
46407757 GAAA
1 GAAA
46407761 GCAAACATGA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 22 0.56
42 17 0.44
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.22
Consensus pattern (42 bp):
GAAACTCATAGGAGTTGAACTAAAACCCAGAAGAGCTAAATG
Found at i:46412711 original size:42 final size:42
Alignment explanation
Indices: 46412665--46412814 Score: 180
Period size: 42 Copynumber: 3.6 Consensus size: 42
46412655 ATGAGTTTAT
*
46412665 GTGTAAGACCATATCTAGGATATGACATC-ATTATGAGATTTC
1 GTGTAAGACCATATCTAGGATATGACATCGA-TATGAGATATC
* *
46412707 GTGTAAGACCATATCT-GTGACATGGCATCGATATGAGA-ATC
1 GTGTAAGACCATATCTAG-GATATGACATCGATATGAGATATC
* * **
46412748 GTGTAAGACCATAGCTAGGCTATTGACATCGATATGAGATCCC
1 GTGTAAGACCATATCTAGGATA-TGACATCGATATGAGATATC
*
46412791 ATGTAAGACCATATCTAGGATATG
1 GTGTAAGACCATATCTAGGATATG
46412815 GCATTGGTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
41 20 0.22
42 50 0.55
43 21 0.23
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTAGGATATGACATCGATATGAGATATC
Found at i:46414384 original size:43 final size:42
Alignment explanation
Indices: 46414293--46414387 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 42
46414283 GTTGAGATTA
* * * * *
46414293 CATGTAAGACTATATCTGGGATATGACATCGATATGAGACTT
1 CATGTAAGACAAAAGCTGGGATATGACATAGATATGAGACTC
* *
46414335 CGTGTAAGACAAAAGCTGGGATATTGGCATAGATATGAGA-TCC
1 CATGTAAGACAAAAGCTGGGATA-TGACATAGATATGAGACT-C
46414378 CATGTAAGAC
1 CATGTAAGAC
46414388 CATGTCTAGG
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
42 20 0.47
43 23 0.53
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (42 bp):
CATGTAAGACAAAAGCTGGGATATGACATAGATATGAGACTC
Found at i:46421154 original size:40 final size:39
Alignment explanation
Indices: 46421109--46421316 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
46421099 CGGAATACAA
*
46421109 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
46421149 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
46421189 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
46421229 CCGGATGTAGTCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
46421269 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
46421309 CCGGATAT
1 CCGGATAT
46421317 CATTCAATTG
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:46421249 original size:80 final size:81
Alignment explanation
Indices: 46421109--46421314 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
46421099 CGGAATACAA
* * *
46421109 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
46421173 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
46421189 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TCG-CTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
46421252 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
46421269 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
46421315 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 103 0.95
81 2 0.02
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:46433396 original size:34 final size:34
Alignment explanation
Indices: 46433357--46433449 Score: 104
Period size: 32 Copynumber: 2.8 Consensus size: 34
46433347 ACAAGCCCAT
*
46433357 TGGGCCTAAGCCCTATTCAGATAATAGCAGGT-AC
1 TGGGCCTAAGCCCTTTTCAGATAATAGCA-GTAAC
*
46433391 TGGGCCGAAGCCCTTTTCAG--AATA-CAGTAAAC
1 TGGGCCTAAGCCCTTTTCAGATAATAGCAGT-AAC
* *
46433423 TGGGCCTTAGCCCTTTTTAGATAATAG
1 TGGGCCTAAGCCCTTTTCAGATAATAG
46433450 TATGGCCCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
30 2 0.04
31 2 0.04
32 23 0.47
34 22 0.45
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (34 bp):
TGGGCCTAAGCCCTTTTCAGATAATAGCAGTAAC
Found at i:46435306 original size:29 final size:29
Alignment explanation
Indices: 46435274--46435346 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
46435264 CTTCGAGCTC
*
46435274 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46435303 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46435332 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
46435347 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:46437084 original size:27 final size:26
Alignment explanation
Indices: 46437028--46437084 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
46437018 TCACATTAAC
* *
46437028 CCTAGAGGTATATCAGTAATTTTACT
1 CCTAGAGGTAAATCAGTAATTTTACA
* * *
46437054 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGAGGTAAATCAGT-AATTTTACA
46437081 CCTA
1 CCTA
46437085 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (26 bp):
CCTAGAGGTAAATCAGTAATTTTACA
Found at i:46439673 original size:34 final size:35
Alignment explanation
Indices: 46439615--46439686 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
46439605 CGTATCCTAG
* *
46439615 CTACAGTCTTAGTCTTCTAAAGTTTTCAGT-TTTCC
1 CTACAGTCTCAGTCTTCTAAAG-TTTCAGTATTACC
* *
46439650 CTACTGTCTCAGT-TTCTACAGTTTCAGTATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
46439684 CTA
1 CTA
46439687 ACTACAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 7 0.22
34 14 0.44
35 11 0.34
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
Found at i:46440095 original size:16 final size:17
Alignment explanation
Indices: 46440074--46440106 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
46440064 CACATTGTAG
46440074 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
46440090 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
46440107 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:46440907 original size:32 final size:33
Alignment explanation
Indices: 46440861--46440924 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
46440851 AACAGCGGGT
46440861 ACTGGGCCGAAG-CCCTTTTCAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCCTTTTCAGATA-ACAGTAA
**
46440893 ACTGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTCAGATAACAGTA
46440925 TGGTCTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 17 0.61
34 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTCAGATAACAGTAA
Found at i:46447866 original size:19 final size:19
Alignment explanation
Indices: 46447832--46447870 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
46447822 GATTTCGTAC
*
46447832 TTTGGTCCATTTTCTCCGTT
1 TTTGGCCCATTTTCT-CGTT
46447852 TTTGGCCCA-TTTCTCGTT
1 TTTGGCCCATTTTCTCGTT
46447870 T
1 T
46447871 CTTTCGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.05, C:0.26, G:0.15, T:0.54
Consensus pattern (19 bp):
TTTGGCCCATTTTCTCGTT
Found at i:46457558 original size:20 final size:20
Alignment explanation
Indices: 46457533--46457570 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46457523 GTTTATTCGC
*
46457533 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
46457553 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
46457571 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:46459228 original size:28 final size:28
Alignment explanation
Indices: 46459196--46459250 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
46459186 CGTAGATCAC
46459196 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
46459224 GAAATTACCCCTAAAGAGCAAAATTAC
1 GAAATTACCCCTAAAGAGCAAAATTAC
46459251 CATATACCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.20
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACT
Found at i:46465556 original size:20 final size:20
Alignment explanation
Indices: 46465531--46465568 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46465521 GTTTATTCGC
*
46465531 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
46465551 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
46465569 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:46467254 original size:26 final size:26
Alignment explanation
Indices: 46467189--46467242 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
46467179 AGCGTAGATC
46467189 ACGAAATTACCCTAAAGAGCAAAATT
1 ACGAAATTACCCTAAAGAGCAAAATT
46467215 ACGAAATTACCCTAAAGAGCAAAATT
1 ACGAAATTACCCTAAAGAGCAAAATT
46467241 AC
1 AC
46467243 CGATATACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.20, G:0.11, T:0.19
Consensus pattern (26 bp):
ACGAAATTACCCTAAAGAGCAAAATT
Found at i:46470078 original size:80 final size:80
Alignment explanation
Indices: 46469994--46470142 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
46469984 TATGGTAACC
* * * *
46469994 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
46470058 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
46470074 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
46470139 CCGG
66 CCGG
46470143 TATAATTTCC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:46470084 original size:40 final size:38
Alignment explanation
Indices: 46470035--46470142 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
46470025 ATCACGATTT
*
46470035 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
46470075 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
46470115 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
46470143 TATAATTTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:46478146 original size:80 final size:80
Alignment explanation
Indices: 46478062--46478210 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
46478052 TATGGTAACC
* * * *
46478062 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
46478126 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
46478142 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
46478207 CCGG
66 CCGG
46478211 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:46478152 original size:40 final size:38
Alignment explanation
Indices: 46478103--46478210 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
46478093 ATCACGATTT
*
46478103 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
46478143 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
46478183 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
46478211 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:46497705 original size:13 final size:13
Alignment explanation
Indices: 46497687--46497721 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
46497677 CGAGGGACAT
46497687 GGGCGTGTGCCCA
1 GGGCGTGTGCCCA
46497700 GGGCGTGTGCCCA
1 GGGCGTGTGCCCA
46497713 GGGCGTGTG
1 GGGCGTGTG
46497722 AAGTCTGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.06, C:0.26, G:0.51, T:0.17
Consensus pattern (13 bp):
GGGCGTGTGCCCA
Found at i:46509376 original size:21 final size:21
Alignment explanation
Indices: 46509333--46509376 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
46509323 TTTTTTTCTT
*
46509333 AAAATCAAAATTTTCTTTTAA
1 AAAATCAAAATTTTCTTTAAA
*
46509354 AAAATCACAACTTTTC-TTAAA
1 AAAATCA-AAATTTTCTTTAAA
46509375 AA
1 AA
46509377 TCAAAGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAATCAAAATTTTCTTTAAA
Found at i:46509386 original size:19 final size:18
Alignment explanation
Indices: 46509326--46509386 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
46509316 CCGAAATTTT
*
46509326 TTTTCTT-AAAATCAAAA
1 TTTTCTTAAAAATCAAAC
46509343 TTTTCTTTTAAAAAATCACAAC
1 TTTTC--TT-AAAAATCA-AAC
46509365 TTTTCTTAAAAATCAAAGC
1 TTTTCTTAAAAATCAAA-C
46509384 TTT
1 TTT
46509387 ATTTCAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
17 5 0.14
18 2 0.05
19 14 0.38
20 2 0.05
21 7 0.19
22 7 0.19
ACGTcount: A:0.41, C:0.15, G:0.02, T:0.43
Consensus pattern (18 bp):
TTTTCTTAAAAATCAAAC
Found at i:46509632 original size:146 final size:147
Alignment explanation
Indices: 46509354--46509641 Score: 438
Period size: 146 Copynumber: 2.0 Consensus size: 147
46509344 TTTCTTTTAA
* *
46509354 AAAATCACAACTTTTCTTAAAAATCAAAGCTTTATTTCAAAATAGTTGAAAAATATCAAAACTTT
1 AAAATCACAACTTTTCTTAAAAATCAAAGATTTATTTCAAAATAGTTGAAAAAGATCAAAACTTT
*
46509419 GTTTTAAAATTTTAAACTTTTCCATTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTAA
66 GTTTTAAAATTTTAAAATTTTCCATTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTAA
46509484 ACTATCTCTTTTTTTTT
131 ACTATCTCTTTTTTTTT
* * * *
46509501 AAAATCACTA-TTTTTTTAAAAATCAAATATTTATTTCGAAATAGTTGAAAAAGATCAAAACTTT
1 AAAATCACAACTTTTCTTAAAAATCAAAGATTTATTTCAAAATAGTTGAAAAAGATCAAAACTTT
* * *
46509565 GTTTTCAAA-TTTAAAATTTTCCTTTAATATGACTTGAAAAAACATATTTTTATTTTAAAAATC-
66 GTTTTAAAATTTTAAAATTTTCCATTAAAATGAC-T-AAAAAACATATTTTTATTTTAAAAATCT
*
46509628 AAACTTTCTCTTTT
129 AAACTATCTCTTTT
46509642 AAAAAAAATA
Statistics
Matches: 128, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
145 21 0.16
146 71 0.55
147 36 0.28
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.43
Consensus pattern (147 bp):
AAAATCACAACTTTTCTTAAAAATCAAAGATTTATTTCAAAATAGTTGAAAAAGATCAAAACTTT
GTTTTAAAATTTTAAAATTTTCCATTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTAA
ACTATCTCTTTTTTTTT
Found at i:46511839 original size:27 final size:27
Alignment explanation
Indices: 46511801--46511854 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
46511791 AAACATAAAC
46511801 TCATTCTTTCAATCATTTTTTAGTAAT
1 TCATTCTTTCAATCATTTTTTAGTAAT
46511828 TCATTCTTTCAATCATTTTTTAGTAAT
1 TCATTCTTTCAATCATTTTTTAGTAAT
46511855 CCATGTACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.04, T:0.56
Consensus pattern (27 bp):
TCATTCTTTCAATCATTTTTTAGTAAT
Found at i:46511901 original size:13 final size:13
Alignment explanation
Indices: 46511876--46511908 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
46511866 TGTAAATGTA
46511876 TCATTTCTCATTTC
1 TCATTT-TCATTTC
46511890 TCATTTTCATTTC
1 TCATTTTCATTTC
46511903 T-ATTTT
1 TCATTTT
46511909 GAGAAACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.26
13 8 0.42
14 6 0.32
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (13 bp):
TCATTTTCATTTC
Found at i:46511907 original size:6 final size:7
Alignment explanation
Indices: 46511876--46511907 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
46511866 TGTAAATGTA
46511876 TCATTTC
1 TCATTTC
46511883 TCATTTC
1 TCATTTC
46511890 TCATTT-
1 TCATTTC
46511896 TCATTTC
1 TCATTTC
46511903 T-ATTT
1 TCATTT
46511908 TGAGAAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 10 0.42
7 14 0.58
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (7 bp):
TCATTTC
Found at i:46513182 original size:52 final size:52
Alignment explanation
Indices: 46513117--46513217 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
46513107 TCTTCTCCTC
* *
46513117 TACCTGTGGTTTTTTCCTGAAAGGGTTTCCACATAAAATTTTGTGTGTTCTT
1 TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACATAAAATTTTGTGTGTTCTT
*
46513169 TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACGTAAAATTTTGTGTGTT
1 TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACATAAAATTTTGTGTGTT
46513218 TTTCTTCTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.44
Consensus pattern (52 bp):
TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACATAAAATTTTGTGTGTTCTT
Done.