Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 159 of 410
Found at i:48458328 original size:96 final size:96
Alignment explanation
Indices: 48458164--48458340 Score: 293
Period size: 96 Copynumber: 1.8 Consensus size: 96
48458154 TAGGGGAACA
*
48458164 TTGATCTGGCTTCGGGCCATGATATTAGCACTTTGGGTGCGAGATACATTGGTTTGGCTTCGGGC
1 TTGATCTGGCTTCGGGCCATGATATTAGCACTTTGGGTGCAAGATACATTGGTTTGGCTTCGGGC
48458229 CATGATACCGGCACTTCGAGTGCGAATTACT
66 CATGATACCGGCACTTCGAGTGCGAATTACT
* *
48458260 TTGATTTGGCTTCGGGCCATGATATTAGCACTTTGGGTGCAAGATATATTGAG-TTGGCTTCGGG
1 TTGATCTGGCTTCGGGCCATGATATTAGCACTTTGGGTGCAAGATACATTG-GTTTGGCTTCGGG
**
48458324 CCATGATATTGGCACTT
65 CCATGATACCGGCACTT
48458341 ATAGTGTGTG
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
96 74 0.99
97 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (96 bp):
TTGATCTGGCTTCGGGCCATGATATTAGCACTTTGGGTGCAAGATACATTGGTTTGGCTTCGGGC
CATGATACCGGCACTTCGAGTGCGAATTACT
Found at i:48458612 original size:32 final size:32
Alignment explanation
Indices: 48458576--48458676 Score: 193
Period size: 32 Copynumber: 3.2 Consensus size: 32
48458566 TTAAGTGCTG
48458576 AAGCTTGCTTATTATTTTCATATGGTCTCACT
1 AAGCTTGCTTATTATTTTCATATGGTCTCACT
*
48458608 AAGCTTACTTATTATTTTCATATGGTCTCACT
1 AAGCTTGCTTATTATTTTCATATGGTCTCACT
48458640 AAGCTTGCTTATTATTTTCATATGGTCTCACT
1 AAGCTTGCTTATTATTTTCATATGGTCTCACT
48458672 AAGCT
1 AAGCT
48458677 ATATAGCTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.46
Consensus pattern (32 bp):
AAGCTTGCTTATTATTTTCATATGGTCTCACT
Found at i:48467063 original size:26 final size:26
Alignment explanation
Indices: 48467031--48467112 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
48467021 AGTTGTCGGG
48467031 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * * **
48467057 TACACAT-G-CGACCT-AAC-TATCTGG
1 TACACATAGTAG-CCTGCACTTA-GTAC
48467081 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
48467107 TACACA
1 TACACA
48467113 CGTGACCTAA
Statistics
Matches: 40, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
23 2 0.05
24 11 0.28
25 8 0.20
26 17 0.43
27 2 0.05
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:48467104 original size:50 final size:50
Alignment explanation
Indices: 48466923--48467122 Score: 204
Period size: 50 Copynumber: 4.0 Consensus size: 50
48466913 GTAGCCGAAG
** * * * *
48466923 CTATCTGGTATGCATAGTTGTCTGCACTTAGTTCTACACATGCGACC-AA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
** * ** ** * *
48466972 AAATCTGGTAAATGTAGTAGCCTGCACTTAGTACTACACACATGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * *
48467022 GTTGTCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
*
48467073 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
48467123 AACCATCTTA
Statistics
Matches: 119, Mismatches: 30, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
49 34 0.29
50 47 0.39
51 38 0.32
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:48467153 original size:14 final size:14
Alignment explanation
Indices: 48467134--48467161 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
48467124 ACCATCTTAA
48467134 ACACATAGTAGTCT
1 ACACATAGTAGTCT
48467148 ACACATAGTAGTCT
1 ACACATAGTAGTCT
48467162 GCAGATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
ACACATAGTAGTCT
Found at i:48468589 original size:22 final size:22
Alignment explanation
Indices: 48468561--48468613 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
48468551 ACTTTCACAT
48468561 TCATCACATCGGCCATTCGGCC
1 TCATCACATCGGCCATTCGGCC
* *
48468583 TCATCACATTGGCCATTTGGCC
1 TCATCACATCGGCCATTCGGCC
*
48468605 TTATCACAT
1 TCATCACAT
48468614 AATTAATACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.30
Consensus pattern (22 bp):
TCATCACATCGGCCATTCGGCC
Found at i:48477605 original size:17 final size:18
Alignment explanation
Indices: 48477583--48477628 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
48477573 TAGATTATCA
48477583 GAAGCTCGATCGA-TTTG
1 GAAGCTCGATCGAGTTTG
48477600 GAAGCTCGATC-AGTTTG
1 GAAGCTCGATCGAGTTTG
48477617 GAAGCTCG-TCGA
1 GAAGCTCGATCGA
48477629 AGATCTATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 3 0.11
17 24 0.89
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (18 bp):
GAAGCTCGATCGAGTTTG
Found at i:48479190 original size:48 final size:49
Alignment explanation
Indices: 48478973--48479192 Score: 281
Period size: 48 Copynumber: 4.6 Consensus size: 49
48478963 AAATGTGCCT
* * * *
48478973 GTGTAAGACCATGTATGGGACATGGAATCGGTGATGATATATGTGTCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGTCTA
* * *
48479022 -TGTAAGACCATGTCTGGGACATGACATCAGCGATGATATGTGTG-CCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGTCTA
*
48479069 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTG-CTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGTCTA
* *
48479117 GTGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATGAG-GAT-TCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTG-TCT-A
*
48479166 -TGTAAGACCATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
48479193 TGGTACTTTA
Statistics
Matches: 151, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
47 3 0.02
48 147 0.97
49 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (49 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGTCTA
Found at i:48485673 original size:40 final size:39
Alignment explanation
Indices: 48485562--48485675 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
48485552 AAATGTTCGA
* *
48485562 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
48485601 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
48485640 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
48485676 GGTTACCATA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 51 0.75
40 17 0.25
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:48485691 original size:40 final size:40
Alignment explanation
Indices: 48485608--48485711 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
48485598 ATTGTGACAT
* *** *
48485608 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
48485647 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
48485687 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48485712 AACGAGTAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 9 0.17
40 45 0.83
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:48495028 original size:40 final size:39
Alignment explanation
Indices: 48494917--48495030 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
48494907 AAATGTTCGA
* *
48494917 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
48494956 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
48494995 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
48495031 GGTTACCATA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 51 0.75
40 17 0.25
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:48495046 original size:40 final size:40
Alignment explanation
Indices: 48494963--48495066 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
48494953 ATTGTGACAT
* *** *
48494963 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
48495002 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
48495042 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48495067 AACGAGTAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 9 0.17
40 45 0.83
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:48497333 original size:12 final size:12
Alignment explanation
Indices: 48497316--48497341 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
48497306 GAAGGGCAAG
48497316 TTAAGTCCTCGC
1 TTAAGTCCTCGC
48497328 TTAAGTCCTCGC
1 TTAAGTCCTCGC
48497340 TT
1 TT
48497342 CATAGGACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (12 bp):
TTAAGTCCTCGC
Found at i:48497724 original size:14 final size:14
Alignment explanation
Indices: 48497705--48497733 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
48497695 AAAATCCCTA
48497705 AGGGGGAGAATTGT
1 AGGGGGAGAATTGT
48497719 AGGGGGAGAATTGT
1 AGGGGGAGAATTGT
48497733 A
1 A
48497734 ACATCCCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.48, T:0.21
Consensus pattern (14 bp):
AGGGGGAGAATTGT
Found at i:48499009 original size:48 final size:48
Alignment explanation
Indices: 48498938--48499213 Score: 245
Period size: 48 Copynumber: 5.8 Consensus size: 48
48498928 ACCGTGCTAA
* * *
48498938 ATGTGACTGTGTAAGACCATGTCTGGCACATGGCATCAGCGATGATCT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
*
48498986 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATC-GATGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAG-CGATGATAT
* *
48499034 GTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * * * ** * * ** *
48499082 GTATGTCAGAATAACACCATGTCTGGGACAGGGCATTGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * * * * *
48499130 GTGTGCCAGTGCAAGACCATGTCTAGGACGTGGCATC-GACAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAG-CGATGATAT
* ** *
48499178 GT-TGATTCATGTAAGACCATGT-TAGGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCT-GGGACATGGCAT
48499214 TGGTTTTTTA
Statistics
Matches: 188, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
47 5 0.03
48 182 0.97
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
Found at i:48499110 original size:96 final size:96
Alignment explanation
Indices: 48498946--48499179 Score: 308
Period size: 96 Copynumber: 2.4 Consensus size: 96
48498936 AAATGTGACT
* * * * * ** *
48498946 GTGTAAGACCATGTCTGGCACATGGCATCAGCGATGATCTATGTGCCTGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTATGCCAGAATAACACCATGTCTG
*
48499011 GGACATGGCATCGATGATGATATGTGTGCCA
66 GGACAGGGCATCGATGATGATATGTGTGCCA
*
48499042 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTATGTCAGAATAACACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTATGCCAGAATAACACCATGTCTG
* *
48499107 GGACAGGGCATTGGTGATGATATGTGTGCCA
66 GGACAGGGCATCGATGATGATATGTGTGCCA
* * * *
48499138 GTGCAAGACCATGTCTAGGACGTGGCATC-GACAATGATATGT
1 GTGTAAGACCATGTCTGGGACATGGCATCAG-CGATGATATGT
48499180 TGATTCATGT
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
95 1 0.01
96 120 0.99
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTATGCCAGAATAACACCATGTCTG
GGACAGGGCATCGATGATGATATGTGTGCCA
Found at i:48499197 original size:96 final size:95
Alignment explanation
Indices: 48498950--48499217 Score: 303
Period size: 96 Copynumber: 2.8 Consensus size: 95
48498940 GTGACTGTGT
* * * * * *
48498950 AAGACCATGTCT-GGCACATGGCATCAGCGATGATCTATGTGCCTGTGTAAGACCATGTCTGGGA
1 AAGACCATGTCTAGG-ACATGGCATCAGCAATGATATGTATGTC-ATGTAAGACCATGTCTGGGA
* * *
48499014 CATGGCATCGATGATGATATGTGTGCCAGTGT
64 CATGGCATTGGTGATGATATGTGTGCCAGTGC
* * *
48499046 AAGACCATGTCTGGGACATGGCATCAGCGATGATATGTATGTCA-GAATAACACCATGTCTGGGA
1 AAGACCATGTCTAGGACATGGCATCAGCAATGATATGTATGTCATG--TAAGACCATGTCTGGGA
*
48499110 CAGGGCATTGGTGATGATATGTGTGCCAGTGC
64 CATGGCATTGGTGATGATATGTGTGCCAGTGC
*
48499142 AAGACCATGTCTAGGACGTGGCATC-GACAATGATATGT-TGATTCATGTAAGACCATGT-TAGG
1 AAGACCATGTCTAGGACATGGCATCAG-CAATGATATGTATG--TCATGTAAGACCATGTCT-GG
48499204 GACATGGCATTGGT
62 GACATGGCATTGGT
48499218 TTTTTAATTG
Statistics
Matches: 149, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
94 1 0.01
95 4 0.03
96 138 0.93
97 5 0.03
98 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (95 bp):
AAGACCATGTCTAGGACATGGCATCAGCAATGATATGTATGTCATGTAAGACCATGTCTGGGACA
TGGCATTGGTGATGATATGTGTGCCAGTGC
Found at i:48499213 original size:144 final size:144
Alignment explanation
Indices: 48498953--48499213 Score: 348
Period size: 144 Copynumber: 1.8 Consensus size: 144
48498943 ACTGTGTAAG
* * * * *
48498953 ACCATGTCTGGCACATGGCATCAGCGATGATCTATGTGCCTGTGTAAGACCATGTCTGGGACATG
1 ACCATGTCTGGCACAGGGCATCAGCGATGATATATGTGCCAGTGCAAGACCATGTCTAGGACATG
**
48499018 GCATCGATGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
66 GCATCGACAATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
48499083 TATGTCAGAATAAC
131 TATGTCAGAATAAC
* ** * * *
48499097 ACCATGTCTGGGACAGGGCATTGGTGATGATATGTGTGCCAGTGCAAGACCATGTCTAGGACGTG
1 ACCATGTCTGGCACAGGGCATCAGCGATGATATATGTGCCAGTGCAAGACCATGTCTAGGACATG
*
48499162 GCATCGACAATGATATGT-TGATTCA-TGTAAGACCATGT-TAGGGACATGGCAT
66 GCATCGACAATGATATGTGTG--CCAGTGTAAGACCATGTCT-GGGACATGGCAT
48499214 TGGTTTTTTA
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
143 3 0.03
144 95 0.95
145 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (144 bp):
ACCATGTCTGGCACAGGGCATCAGCGATGATATATGTGCCAGTGCAAGACCATGTCTAGGACATG
GCATCGACAATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
TATGTCAGAATAAC
Found at i:48500508 original size:19 final size:18
Alignment explanation
Indices: 48500459--48500511 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
48500449 ACACGGCCTC
*
48500459 GGGACACAGGTGTGTCAA
1 GGGACACAGGCGTGTCAA
48500477 GGGACAC-GTGCGTGTCAA
1 GGGACACAG-GCGTGTCAA
48500495 GGGCACACAGGCGTGTC
1 GGG-ACACAGGCGTGTC
48500512 CTTATGTCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 1 0.03
18 18 0.58
19 11 0.35
20 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.40, T:0.15
Consensus pattern (18 bp):
GGGACACAGGCGTGTCAA
Found at i:48510004 original size:27 final size:27
Alignment explanation
Indices: 48509974--48510032 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
48509964 TTATACCTAC
** *
48509974 ACCCCAATTTGGTAAAATGACTGTTAT
1 ACCCCAATGAGGTAAAATGACTGATAT
* *
48510001 ACCCCTATGAGGTAAAATGATTGATAT
1 ACCCCAATGAGGTAAAATGACTGATAT
48510028 ACCCC
1 ACCCC
48510033 TAAAATATGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (27 bp):
ACCCCAATGAGGTAAAATGACTGATAT
Found at i:48512315 original size:23 final size:22
Alignment explanation
Indices: 48512289--48512344 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 22
48512279 TTTTTTTTTT
48512289 CATTTTTACATGTGTTTTTCA-TG
1 CATTTTTACAT-TG-TTTTCATTG
**
48512312 CATTCGTA-ATTGTTTTCATTG
1 CATTTTTACATTGTTTTCATTG
48512333 CATTTTCTACAT
1 CATTTT-TACAT
48512345 ATCTATTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
20 6 0.23
21 8 0.31
22 4 0.15
23 8 0.31
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.54
Consensus pattern (22 bp):
CATTTTTACATTGTTTTCATTG
Found at i:48518450 original size:41 final size:41
Alignment explanation
Indices: 48518405--48518522 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
48518395 TGAAAGATAA
48518405 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
48518446 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48518476 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48518517 ATGTAG
1 ATGTAG
48518523 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:48518461 original size:71 final size:71
Alignment explanation
Indices: 48518373--48518536 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48518363 GAGATGTATC
48518373 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48518438 AGGACA
66 AGGACA
48518444 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48518509 AGGACA
66 AGGACA
48518515 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
48518537 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:48526019 original size:41 final size:41
Alignment explanation
Indices: 48525974--48526091 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
48525964 TGAAAGATAA
48525974 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
48526015 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48526045 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48526086 ATGTAG
1 ATGTAG
48526092 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:48526030 original size:71 final size:71
Alignment explanation
Indices: 48525942--48526105 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48525932 GAGATGTATC
48525942 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48526007 AGGACA
66 AGGACA
48526013 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48526078 AGGACA
66 AGGACA
48526084 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
48526106 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:48533594 original size:41 final size:41
Alignment explanation
Indices: 48533549--48533666 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
48533539 TGAAAGATAA
48533549 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
48533590 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48533620 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48533661 ATGTAG
1 ATGTAG
48533667 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:48533605 original size:71 final size:71
Alignment explanation
Indices: 48533517--48533680 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48533507 GAGATGTATC
48533517 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48533582 AGGACA
66 AGGACA
48533588 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48533653 AGGACA
66 AGGACA
48533659 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
48533681 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:48535338 original size:34 final size:35
Alignment explanation
Indices: 48535287--48535364 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 35
48535277 TTTTAGGGTT
*
48535287 TTTAA-GTTTAGGGTTTTGCTAAAATAATTTAGG-
1 TTTAAGGTTTAGGGTTTTGCTAAAATAAGTTAGGA
* * *
48535320 TTTAAGGTTTATGTTTTTGTTAAAATAAGTTAGGA
1 TTTAAGGTTTAGGGTTTTGCTAAAATAAGTTAGGA
48535355 TTTAAGGTTT
1 TTTAAGGTTT
48535365 TAGTGGATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 5 0.13
34 24 0.62
35 10 0.26
ACGTcount: A:0.29, C:0.01, G:0.21, T:0.49
Consensus pattern (35 bp):
TTTAAGGTTTAGGGTTTTGCTAAAATAAGTTAGGA
Found at i:48535378 original size:35 final size:35
Alignment explanation
Indices: 48535306--48535394 Score: 85
Period size: 36 Copynumber: 2.5 Consensus size: 35
48535296 AGGGTTTTGC
* **
48535306 TAAAATAATTTAGG-TTTAAGGTTTATGTTTTTGT
1 TAAAATAAATTAGGATTTAAGGTTTATGTGATTGT
*
48535340 TAAAATAAGTTAGGATTTAAGGTTT-TAGTGGATT-T
1 TAAAATAAATTAGGATTTAAGGTTTAT-GT-GATTGT
*
48535375 TAAAAATAAATCAGGATTTA
1 T-AAAATAAATTAGGATTTA
48535395 GTATTATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
34 14 0.30
35 14 0.30
36 18 0.39
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.44
Consensus pattern (35 bp):
TAAAATAAATTAGGATTTAAGGTTTATGTGATTGT
Found at i:48535455 original size:34 final size:32
Alignment explanation
Indices: 48535401--48535492 Score: 123
Period size: 34 Copynumber: 2.8 Consensus size: 32
48535391 TTTAGTATTA
*
48535401 TTTTATAAA-AAATAATTAAATTAGGGTTTATGG
1 TTTT-TAAATAAATAA-TAAATTAGGGTTTAAGG
48535434 TTTTTAAATAAATTAAGTAAATTAGGGTTTAAGG
1 TTTTTAAATAAA-TAA-TAAATTAGGGTTTAAGG
*
48535468 GTTTTAAATAAATAATAAATTAGGG
1 TTTTTAAATAAATAATAAATTAGGG
48535493 ATTAGTGTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
32 14 0.26
33 10 0.19
34 30 0.56
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.40
Consensus pattern (32 bp):
TTTTTAAATAAATAATAAATTAGGGTTTAAGG
Found at i:48535939 original size:8 final size:8
Alignment explanation
Indices: 48535926--48535965 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
48535916 TCAGATATTA
48535926 ACTAACAG
1 ACTAACAG
*
48535934 ACTAACTG
1 ACTAACAG
48535942 TAGCTAACAG
1 -A-CTAACAG
48535952 ACTAACAG
1 ACTAACAG
48535960 ACTAAC
1 ACTAAC
48535966 CACCTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 20 0.71
9 2 0.07
10 6 0.21
ACGTcount: A:0.45, C:0.25, G:0.12, T:0.17
Consensus pattern (8 bp):
ACTAACAG
Found at i:48541761 original size:40 final size:40
Alignment explanation
Indices: 48541706--48541915 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
48541696 AACATTGGAA
48541706 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48541746 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48541786 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
48541826 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
48541865 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
48541906 CTATATCCGG
1 ATATATCCGG
48541916 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:48549896 original size:40 final size:40
Alignment explanation
Indices: 48549841--48550050 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
48549831 AACATTGGAA
48549841 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48549881 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48549921 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
48549961 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
48550000 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
48550041 CTATATCCGG
1 ATATATCCGG
48550051 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:48552523 original size:18 final size:19
Alignment explanation
Indices: 48552486--48552523 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
48552476 AATCAGCTAC
* *
48552486 AATACATAAAATATACTAA
1 AATACATAAAACATAATAA
48552505 AATACA-AAAACATAATAA
1 AATACATAAAACATAATAA
48552523 A
1 A
48552524 GATAATGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.21
Consensus pattern (19 bp):
AATACATAAAACATAATAA
Found at i:48556093 original size:43 final size:43
Alignment explanation
Indices: 48555997--48556155 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
48555987 TATCAATATG
* * * *
48555997 TGATTACATGTAATACCATGTCTGGGACATTGGCATTGTATTA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAA
48556040 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TAA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAA
* * * * * *
48556082 TCGATTTCGTGTAAG-GCACTATCTGGGACAGTGACATCG-ATATG
1 T-GATTACGTGTAAGACCA-TGTCTGGGACATTGGCATCGTATA-A
* * *
48556126 TGATAACATGTAAGACCATATCTGGGACAT
1 TGATTACGTGTAAGACCATGTCTGGGACAT
48556156 GGAATTGTAC
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
42 5 0.05
43 88 0.92
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAA
Found at i:48560489 original size:12 final size:12
Alignment explanation
Indices: 48560472--48560501 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
48560462 CAAGATTTTG
48560472 GACACAGACGAT
1 GACACAGACGAT
*
48560484 GACACAGGCGAT
1 GACACAGACGAT
48560496 GACACA
1 GACACA
48560502 CGCCTGTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.27, G:0.27, T:0.07
Consensus pattern (12 bp):
GACACAGACGAT
Found at i:48564475 original size:42 final size:42
Alignment explanation
Indices: 48564428--48564561 Score: 162
Period size: 42 Copynumber: 3.2 Consensus size: 42
48564418 TACGTATAAT
*
48564428 ACCATATCTGGGATATAGCATC-AGTATGAGACTACGTGTAAG
1 ACCATATCTGGGATATAGCATCGA-TATGAGACTACATGTAAG
* *
48564470 ACCATATCTGGGATATGGCATCGATATGAGACTTCATGTAAG
1 ACCATATCTGGGATATAGCATCGATATGAGACTACATGTAAG
* * * * * *
48564512 ACCACAGCTAGGCTATTAGCATCGATACGAGACTACATGTAAA
1 ACCATATCTGGGATA-TAGCATCGATATGAGACTACATGTAAG
48564555 ACCATAT
1 ACCATAT
48564562 GCAACACCCC
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 48 0.62
43 29 0.38
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (42 bp):
ACCATATCTGGGATATAGCATCGATATGAGACTACATGTAAG
Found at i:48567745 original size:39 final size:39
Alignment explanation
Indices: 48567690--48567827 Score: 181
Period size: 39 Copynumber: 3.5 Consensus size: 39
48567680 GGACTAAGAT
* *
48567690 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
48567729 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
48567769 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGGTTAAGTC
* *
48567808 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
48567828 CGTTATATCC
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 55 0.62
40 32 0.36
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:48575768 original size:40 final size:39
Alignment explanation
Indices: 48575732--48575838 Score: 151
Period size: 39 Copynumber: 2.7 Consensus size: 39
48575722 ATATCCGGAC
*
48575732 TAAGATCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
* * * *
48575772 TAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
48575811 TAAGTCCCGAAGGCATTCGTGCGAGTTA
1 TAAGT-CCGAAGGCATTCGTGCGAGTTA
48575839 CTATAACCGG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.58
40 25 0.42
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
Found at i:48575839 original size:40 final size:40
Alignment explanation
Indices: 48575738--48575876 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
48575728 GGACTAAGAT
* * *
48575738 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
*
48575777 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
48575817 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
* *
48575857 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
48575877 CGTTATATCC
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.38
40 46 0.52
41 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:48577405 original size:48 final size:48
Alignment explanation
Indices: 48577268--48577437 Score: 187
Period size: 48 Copynumber: 3.5 Consensus size: 48
48577258 GGGGTGTTAC
* *
48577268 ACATGGTCTTACACTAGCTCACATATTAAGGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCACATATTAAGGCTGATGCCATGTCCCAA
* * ** * ** * * * *
48577316 ACATTGTCTTACATTAATTCTCATAACAATGTTGATTCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACATATTAAGGCTGATGCCATGTCCCAA
* * *
48577364 ACATGATCTTACACTGGCTCACATATTGAGGCTGATGCCATGTCCCAA
1 ACATGGTCTTACACTAGCTCACATATTAAGGCTGATGCCATGTCCCAA
*
48577412 ACATGGTCTTACACTAGCTCAAATAT
1 ACATGGTCTTACACTAGCTCACATAT
48577438 ACCCCAAAGC
Statistics
Matches: 92, Mismatches: 30, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCACATATTAAGGCTGATGCCATGTCCCAA
Found at i:48581843 original size:48 final size:48
Alignment explanation
Indices: 48581791--48581962 Score: 272
Period size: 48 Copynumber: 3.6 Consensus size: 48
48581781 TGATCTCATA
* * *
48581791 TAAGACCATGTTTGGGACATGGCATTGGCATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
* * * * *
48581839 TAAGACTATGTCTGGGACATGGCATCAACATTATTATCTGAGCCAATG
1 TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
48581887 TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
48581935 TAAGACCATGTCTGGGACATGGCATCGA
1 TAAGACCATGTCTGGGACATGGCATCGA
48581963 GATGAGGAAT
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
Found at i:48582096 original size:22 final size:22
Alignment explanation
Indices: 48582063--48582107 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
48582053 ATACATCATG
48582063 TTCGATTATTCCCGAGTATCCT
1 TTCGATTATTCCCGAGTATCCT
*
48582085 TTCGAGTT-TTCCTGAGTATCCT
1 TTCGA-TTATTCCCGAGTATCCT
48582107 T
1 T
48582108 AGAATCCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.44
Consensus pattern (22 bp):
TTCGATTATTCCCGAGTATCCT
Found at i:48585630 original size:45 final size:45
Alignment explanation
Indices: 48585579--48585704 Score: 209
Period size: 45 Copynumber: 2.8 Consensus size: 45
48585569 ATAATTTCAT
*
48585579 CGGCATTATAGCCTGTTAGGCTCGAAA-GCCCGAATAGTGTCTCAC
1 CGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTGTCTCAC
*
48585624 CGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTGTCTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTCTCAC
*
48585669 CGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
48585705 TAATACCAGC
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
44 3 0.04
45 73 0.96
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (45 bp):
CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTCTCAC
Found at i:48585745 original size:38 final size:38
Alignment explanation
Indices: 48585697--48585867 Score: 279
Period size: 38 Copynumber: 4.5 Consensus size: 38
48585687 GGCTCAAAGG
* * *
48585697 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
48585735 CCCGGATATAATACCAGCACGAAGCCTGCGGGAATTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
48585773 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
48585811 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
48585849 CCCGGATATAATTCCAGCA
1 CCCGGATATAATACCAGCA
48585868 TATAGCCTGT
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 125 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:48585875 original size:76 final size:76
Alignment explanation
Indices: 48585697--48585894 Score: 274
Period size: 76 Copynumber: 2.6 Consensus size: 76
48585687 GGCTCAAAGG
* * *
48585697 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
1 CCCGGATATAATTCCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
48585762 GCGGGAATTAA
66 GCGGGAATTAA
* *
48585773 CCCGGATAT-ATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCC
1 CCCGGATATAATT-CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
*
48585837 TGCGGGATTTAA
65 TGCGGGAATTAA
* ** *
48585849 CCCGGATATAATTCCAGCA-TATAGCCTGTGGTCTTTAAACCGGATA
1 CCCGGATATAATTCCAGCACTA-AGCCTGCGGGATTTAACCCGGATA
48585895 CAAATATCAT
Statistics
Matches: 108, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
75 3 0.03
76 102 0.94
77 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (76 bp):
CCCGGATATAATTCCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
GCGGGAATTAA
Found at i:48586272 original size:43 final size:45
Alignment explanation
Indices: 48586165--48586274 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
48586155 CATAACATTT
* * *
48586165 TATTTCACCGGCATTATAACCTGCTAGGCTCAAAGGCTCGAATAA
1 TATTTCACCGGCATTATAGCCTACTAAGCTCAAAGGCTCGAATAA
*
48586210 TATTTCACCGGCATCATAGCCTACTAAGCTCAAA-GCTCG-AT-A
1 TATTTCACCGGCATTATAGCCTACTAAGCTCAAAGGCTCGAATAA
*
48586252 TCATTTCCCCGGCATTATAGCCT
1 T-ATTTCACCGGCATTATAGCCT
48586275 GCTAGCCTCG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 2 0.03
43 21 0.36
44 5 0.09
45 30 0.52
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (45 bp):
TATTTCACCGGCATTATAGCCTACTAAGCTCAAAGGCTCGAATAA
Found at i:48590543 original size:30 final size:30
Alignment explanation
Indices: 48590507--48590666 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
48590497 GACAAGATTG
* * * * *
48590507 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
48590537 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
48590565 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
48590594 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
48590624 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
48590653 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
48590667 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:48590634 original size:59 final size:57
Alignment explanation
Indices: 48590507--48590666 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
48590497 GACAAGATTG
* * * * * *
48590507 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
48590565 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
48590624 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
48590667 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:48592293 original size:20 final size:20
Alignment explanation
Indices: 48592268--48592305 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
48592258 GTTTATTCGC
*
48592268 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
48592288 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
48592306 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:48603192 original size:38 final size:38
Alignment explanation
Indices: 48603134--48603220 Score: 106
Period size: 38 Copynumber: 2.3 Consensus size: 38
48603124 GGGTGTCACA
48603134 TAACCCGGATATATTACCAGCACGA-AGCCTGCGGGATT
1 TAACCCGGATATATTACCAGCA-GATAGCCTGCGGGATT
* **
48603172 TAACCCGGATATAATT-CCAGCATATAGCCTGCGGTCTT
1 TAACCCGGATAT-ATTACCAGCAGATAGCCTGCGGGATT
*
48603210 TAAGCCGGATA
1 TAACCCGGATA
48603221 CAAATATCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
37 1 0.02
38 39 0.91
39 3 0.07
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (38 bp):
TAACCCGGATATATTACCAGCAGATAGCCTGCGGGATT
Found at i:48603598 original size:43 final size:44
Alignment explanation
Indices: 48603492--48603624 Score: 153
Period size: 43 Copynumber: 3.0 Consensus size: 44
48603482 ATAACATTTT
* *
48603492 ATTTCACCGGCATTATAACCTGCTAGGCTCAAAGGCTCGAATAAT-
1 ATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAAT-ATC
* * * *
48603537 ATTTCACTGGCATCATAGCCTACTAAGCTCAAAGCCCG-ATATC
1 ATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATATC
* * *
48603580 ATTTCCCCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATATC
1 ATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATATC
48603624 A
1 A
48603625 CATTTCGATA
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
42 2 0.03
43 33 0.45
44 10 0.14
45 28 0.38
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (44 bp):
ATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATATC
Found at i:48606728 original size:36 final size:37
Alignment explanation
Indices: 48606673--48606766 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
48606663 TGACAGATAC
* * * *
48606673 GACCATGGTTGGACCATGGCAAAGT-ATGGA-TTGTAA
1 GACCATAGCTGGACTATGGCAAAGTAAT-GACATGTAA
* **
48606709 GACCATAGCTGGGCTATGGCATCGTAATGACATGTAA
1 GACCATAGCTGGACTATGGCAAAGTAATGACATGTAA
*
48606746 GACCATAGTTGGACTATGGCA
1 GACCATAGCTGGACTATGGCA
48606767 TTGTGATTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
36 21 0.45
37 26 0.55
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (37 bp):
GACCATAGCTGGACTATGGCAAAGTAATGACATGTAA
Found at i:48606782 original size:37 final size:37
Alignment explanation
Indices: 48606704--48606805 Score: 123
Period size: 37 Copynumber: 2.8 Consensus size: 37
48606694 AAGTATGGAT
* *
48606704 TGTAAGACCATAGCTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCATAGTTGGACTATGGCATCGTAATGACA
* * ****
48606741 TGTAAGACCATAGTTGGACTATGGCATTGTGATTTTG
1 TGTAAGACCATAGTTGGACTATGGCATCGTAATGACA
*
48606778 TGTAAGACCATAGTTGGACTATGACATC
1 TGTAAGACCATAGTTGGACTATGGCATC
48606806 AAGTAAACGA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (37 bp):
TGTAAGACCATAGTTGGACTATGGCATCGTAATGACA
Found at i:48610218 original size:48 final size:47
Alignment explanation
Indices: 48610121--48610282 Score: 208
Period size: 48 Copynumber: 3.5 Consensus size: 47
48610111 ATGTGTAACC
* * * *
48610121 GTGTAAGACCATATCTGGGATATGGCATTGGC-----ATGTGATCCC
1 GTGTAAGACCATGTCTGGGACATGGCATTGGCATGTTATGTGAGCCA
*
48610163 GTATAAGACCATGTCTGGGACATGGCATTGGCATTGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATTGGCA-TGTTATGTGAGCCA
* *
48610211 GTGTAAGACCATGTCCGGGACATGGCATCGGCATCGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATTGGCAT-GTTATGTGAGCCA
48610259 GTGTAAGACCATGTCTGGGACATG
1 GTGTAAGACCATGTCTGGGACATG
48610283 CCATCAACTT
Statistics
Matches: 104, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
42 29 0.28
47 1 0.01
48 74 0.71
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATTGGCATGTTATGTGAGCCA
Found at i:48620133 original size:43 final size:43
Alignment explanation
Indices: 48620083--48620237 Score: 204
Period size: 43 Copynumber: 3.6 Consensus size: 43
48620073 GTTATCGAGA
* *
48620083 TGTGATTACATGTAAGACCATGTCTAGGACACTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACACTGGCATCGTAT
* * *
48620126 TATGATTACTTGTAAGACCATGTCTGGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACACTGGCATCGTAT
* * *
48620169 TGTGATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACACTGGCATCGTAT
* *
48620211 ATGTGATAACATGTAAGACCATATCTG
1 -TGTGATTACATGTAAGACCATGTCTG
48620238 AGTATCCTTA
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 2 0.02
43 95 0.98
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACACTGGCATCGTAT
Found at i:48628246 original size:18 final size:18
Alignment explanation
Indices: 48628206--48628246 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
48628196 AGGCCATTTT
48628206 TGGGCTATGTGGGCCACA
1 TGGGCTATGTGGGCCACA
*
48628224 AGGGC-ATGTGGGCCCACA
1 TGGGCTATGTGGG-CCACA
48628242 TGGGC
1 TGGGC
48628247 CGCAAAATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.17, C:0.24, G:0.41, T:0.17
Consensus pattern (18 bp):
TGGGCTATGTGGGCCACA
Found at i:48631523 original size:21 final size:21
Alignment explanation
Indices: 48631499--48631549 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
48631489 ATTTGATGAA
*
48631499 TAAACGAG-TTAATTTTCAATG
1 TAAA-GAGATTAATTTTCAAAG
*
48631520 TAAATAGATTAATTTTCAAAG
1 TAAAGAGATTAATTTTCAAAG
*
48631541 TAAATAGAT
1 TAAAGAGAT
48631550 CAAGAACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (21 bp):
TAAAGAGATTAATTTTCAAAG
Found at i:48631867 original size:43 final size:43
Alignment explanation
Indices: 48631817--48631966 Score: 212
Period size: 43 Copynumber: 3.5 Consensus size: 43
48631807 GATATCGAGA
48631817 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * *
48631860 TATGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
48631903 TGTGATTTCATGTAAGACCCTGTCTGGGACAGTGGCATTG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
*
48631945 ATGTGATAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
48631967 ATCTACGATA
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 2 0.02
43 90 0.98
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:48633200 original size:24 final size:24
Alignment explanation
Indices: 48633155--48633200 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
48633145 TGCATTATGG
**
48633155 AAGGAAAATAAAGAAATGAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAAA
* *
48633179 AAGGAAAATGATGAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAA
48633201 GAGTGTGGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (24 bp):
AAGGAAAATAAAGAAAAAAAAAAA
Found at i:48634521 original size:29 final size:29
Alignment explanation
Indices: 48634488--48634647 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
48634478 GTGACGAGAT
48634488 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48634517 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48634546 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
48634575 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
48634604 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
48634633 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
48634648 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:48642484 original size:29 final size:29
Alignment explanation
Indices: 48642451--48642610 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
48642441 GTGACGAGAT
48642451 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48642480 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48642509 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
48642538 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
48642567 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
48642596 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
48642611 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:48646853 original size:29 final size:29
Alignment explanation
Indices: 48646723--48646845 Score: 228
Period size: 29 Copynumber: 4.2 Consensus size: 29
48646713 GTGACGAGAT
48646723 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48646752 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48646781 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
48646810 TGGCACTAAGTGTGCATACTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
48646839 CGGCACT
1 TGGCACT
48646846 GGGTGTGCGA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:48646870 original size:58 final size:58
Alignment explanation
Indices: 48646724--48646882 Score: 203
Period size: 58 Copynumber: 2.7 Consensus size: 58
48646714 TGACGAGATT
* * * *
48646724 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATACTGGAAATATAC
* *
48646782 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATACTGGAAATATAC
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATACTGGAAATATAC
** * * *
48646840 GGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCACTATGTGTGC
1 GGCACTAAGTGTGC-ATGCTCGAAAGATATGGCACTAAGTGTGC
48646883 GGGCTTAAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
58 90 0.99
59 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATACTGGAAATATAC
Found at i:48646870 original size:87 final size:87
Alignment explanation
Indices: 48646723--48646910 Score: 227
Period size: 87 Copynumber: 2.2 Consensus size: 87
48646713 GTGACGAGAT
* * * *
48646723 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATACTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
48646788 AAGTGTGCATGCTGGAAAT-ATA
66 AAGTGTGCAGGCT-GAAATCACA
** * *
48646810 TGGCACTAAGTGTGCATACTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATACTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
* * *
48646874 TATGTGTGCGGGCTTAAATCACA
65 TAAGTGTGCAGGCTGAAATCACA
48646897 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
48646911 TGAAATCGAG
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 4 0.05
87 81 0.94
88 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATACTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGAAATCACA
Found at i:48664862 original size:40 final size:40
Alignment explanation
Indices: 48664792--48665049 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
48664782 AAGCCAAGTA
* * * * *
48664792 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
48664831 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
48664871 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48664911 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48664951 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
48664991 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAACG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
48665031 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48665050 TTATCATCCA
Statistics
Matches: 202, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 13 0.06
40 189 0.94
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48675814 original size:40 final size:40
Alignment explanation
Indices: 48675770--48675930 Score: 216
Period size: 40 Copynumber: 4.0 Consensus size: 40
48675760 AAATATTGTT
*
48675770 TGAATGCACATATGTGCCCCTGTTTGTACTTTAGTATCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTTAGTATCCC
*
48675810 TGAATGCACATACGTGCCCCTGTTTGTACTTTTGTA-CCGC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTTAGTATCC-C
* * *
48675850 TGAATGCACATACGTGCCCCTATTTGTACTTGAATATCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTTAGTATCCC
* * * * *
48675890 TAAATGCACATACGTGCCCTTGTTTGTTCTTTGGTAACCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTTAGTATCCC
48675930 T
1 T
48675931 AAATCAATTA
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.36
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTTAGTATCCC
Found at i:48675830 original size:20 final size:20
Alignment explanation
Indices: 48675807--48675870 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
48675797 ACTTTAGTAT
48675807 CCCTGAATGCACATACGTGC
1 CCCTGAATGCACATACGTGC
** * * ** *
48675827 CCCTGTTTGTACTTTTGTAC
1 CCCTGAATGCACATACGTGC
*
48675847 CGCTGAATGCACATACGTGC
1 CCCTGAATGCACATACGTGC
48675867 CCCT
1 CCCT
48675871 ATTTGTACTT
Statistics
Matches: 28, Mismatches: 16, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.19, C:0.33, G:0.19, T:0.30
Consensus pattern (20 bp):
CCCTGAATGCACATACGTGC
Found at i:48675858 original size:80 final size:80
Alignment explanation
Indices: 48675770--48675921 Score: 241
Period size: 80 Copynumber: 1.9 Consensus size: 80
48675760 AAATATTGTT
* * * * *
48675770 TGAATGCACATATGTGCCCCTGTTTGTACTTTAGTATCCCTGAATGCACATACGTGCCCCTGTTT
1 TGAATGCACATACGTGCCCCTATTTGTACTTGAATATCCCTAAATGCACATACGTGCCCCTGTTT
48675835 GTACTTTTGTACCGC
66 GTACTTTTGTACCGC
*
48675850 TGAATGCACATACGTGCCCCTATTTGTACTTGAATATCCCTAAATGCACATACGTGCCCTTGTTT
1 TGAATGCACATACGTGCCCCTATTTGTACTTGAATATCCCTAAATGCACATACGTGCCCCTGTTT
*
48675915 GTTCTTT
66 GTACTTT
48675922 GGTAACCCTA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 65 1.00
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (80 bp):
TGAATGCACATACGTGCCCCTATTTGTACTTGAATATCCCTAAATGCACATACGTGCCCCTGTTT
GTACTTTTGTACCGC
Found at i:48682406 original size:55 final size:55
Alignment explanation
Indices: 48682319--48682431 Score: 129
Period size: 55 Copynumber: 2.1 Consensus size: 55
48682309 CAAGCCTGCC
* * *
48682319 AAAACAACACGGGCGTGCGACACGCCTGTGTGGAAGAATCGTGGGCGAACCTGTT
1 AAAACAACACGGGCATGCGACACGCCTGTGTGGAACAACCGTGGGCGAACCTGTT
* * * * * *
48682374 AAAACAACACGGGCATTCGACATGTTCT-TGTGGAACACCCGTGGTCGAACTTGTT
1 AAAACAACACGGGCATGCGACACG-CCTGTGTGGAACAACCGTGGGCGAACCTGTT
48682429 AAA
1 AAA
48682432 TTAACACAGG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
55 46 0.96
56 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.20
Consensus pattern (55 bp):
AAAACAACACGGGCATGCGACACGCCTGTGTGGAACAACCGTGGGCGAACCTGTT
Found at i:48689206 original size:17 final size:18
Alignment explanation
Indices: 48689174--48689211 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
48689164 AATATAATGC
48689174 AAAATATAATATGG-AAT
1 AAAATATAATATGGAAAT
48689191 AAAAT-TAATATGGGAAAT
1 AAAATATAATAT-GGAAAT
48689209 AAA
1 AAA
48689212 CTAATATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 7 0.37
18 6 0.32
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (18 bp):
AAAATATAATATGGAAAT
Found at i:48690836 original size:23 final size:23
Alignment explanation
Indices: 48690793--48690857 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 23
48690783 GCCTAGATTT
*
48690793 TATATATTTTTTAATTATT-AAA
1 TATATATTTTATAATTATTAAAA
48690815 TAATATATTATTATAATT-TTAAAA
1 T-ATATATT-TTATAATTATTAAAA
48690839 TATATATTTATACTAATTA
1 TATATATTT-TA-TAATTA
48690858 AATGTGAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 2 0.06
23 18 0.50
24 16 0.44
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
TATATATTTTATAATTATTAAAA
Found at i:48698208 original size:50 final size:51
Alignment explanation
Indices: 48698090--48698220 Score: 174
Period size: 52 Copynumber: 2.6 Consensus size: 51
48698080 TTGTGAGAAA
* * **
48698090 ACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGG-TTTAGGTC
* * *
48698142 ACATGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATGG-TTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTTAGGTC
*
48698192 ACATGTGTATTACTAAGTGCAGGCTACTA
1 ACATGTGTAGTACTAAGTGCAGGCTACTA
48698221 TGCGTACCCG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
50 34 0.49
52 36 0.51
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (51 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTTAGGTC
Found at i:48698228 original size:50 final size:50
Alignment explanation
Indices: 48698090--48698277 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 50
48698080 TTGTGAGAAA
* *** *
48698090 ACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG--TTAGGTC
* *
48698142 ACATGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATGGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTC
* * * * * *
48698192 ACATGTGTATTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GGTTAGGTC
* * * *
48698243 ACATGTGTGGTACTAAATGCAGGCCACCATGTGTA
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA
48698278 AAAGATAGCT
Statistics
Matches: 114, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
50 43 0.38
51 35 0.31
52 36 0.32
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTC
Found at i:48698264 original size:51 final size:51
Alignment explanation
Indices: 48698090--48698326 Score: 206
Period size: 51 Copynumber: 4.6 Consensus size: 51
48698080 TTGTGAGAAA
* *** * * *
48698090 ACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG-CTTAGGTC
* * *
48698142 ACATGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGAT-GGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTAGGTC
* * * * *
48698192 ACATGTGTATTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTAGGTC
* * * * ** *
48698243 ACATGTGTGGTACTAAATGCAGGCCACCATGTGTAAAAGATAGCTTTGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTAGGTC
* * * * * *
48698294 ACAAGTGTGGTACTACGTGAAGGCCACTTTGTG
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTG
48698327 AAGAAGGTAG
Statistics
Matches: 151, Mismatches: 33, Indels: 3
0.81 0.18 0.02
Matches are distributed among these distances:
50 43 0.28
51 74 0.49
52 34 0.23
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (51 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTAGGTC
Found at i:48698338 original size:51 final size:51
Alignment explanation
Indices: 48698094--48698372 Score: 152
Period size: 51 Copynumber: 5.5 Consensus size: 51
48698084 GAGAAAACAT
* * * * * * * *
48698094 GTGTAGTACTATGTGCAGGCTACTATGTGTTTAAA-ATGGTTTTAGGTCACAT
1 GTGTGGTACTAAGTGCAGGCCACCATGTG-TAAAAGATAGCTTT-GGTCACAA
* * ** * ** * * *
48698146 GTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGAT-GGTTAGGTCACAT
1 GTGTGGTACTAAGTGCAGGCCACCATGTGTAAAAGATAGCTTTGGTCACAA
** * * * *** * * *
48698196 GTGTATTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACAT
1 GTGTGGTACTAAGTGCAGGCCACCATGTGTAAAAGATAGCTTTGGTCACAA
*
48698247 GTGTGGTACTAAATGCAGGCCACCATGTGTAAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTAAGTGCAGGCCACCATGTGTAAAAGATAGCTTTGGTCACAA
* * ** * *
48698298 GTGTGGTACTACGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTT-GACTACAA
1 GTGTGGTACTAAGTGCAGGCCACCATGTGTAA-AAGATAGCTTTGGTC-ACAA
* *
48698349 GGGTGGTACTATGTGCAGGCCACC
1 GTGTGGTACTAAGTGCAGGCCACC
48698373 GGGCATCCAT
Statistics
Matches: 184, Mismatches: 39, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
50 44 0.24
51 112 0.61
52 28 0.15
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (51 bp):
GTGTGGTACTAAGTGCAGGCCACCATGTGTAAAAGATAGCTTTGGTCACAA
Found at i:48700741 original size:90 final size:90
Alignment explanation
Indices: 48700640--48700809 Score: 225
Period size: 90 Copynumber: 1.9 Consensus size: 90
48700630 ATTAAGTGAT
* * * *
48700640 TTCATATAAGACCATGT-TCGGGACATGGCATCGATATGAGGTCCCGTATAAGACCATGTCAAGG
1 TTCATAGAAGACCATATCT-GGGACACGGCATCGATATGAGGTCCCATATAAGACCATGTCAAGG
*
48700704 ACATGGCGTTGGCACCGATTTGAGAC
65 ACATGGCGTTGCCACCGATTTGAGAC
* * * * *
48700730 TTCATAGAAGACCATATCTGGGATACGGCATCGATGTGTGGTCCCATGTAAGACCATGTCTAGGA
1 TTCATAGAAGACCATATCTGGGACACGGCATCGATATGAGGTCCCATATAAGACCATGTCAAGGA
*
48700795 CATGGCTTTGCCACC
66 CATGGCGTTGCCACC
48700810 CTATTTGGTG
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
90 67 0.99
91 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (90 bp):
TTCATAGAAGACCATATCTGGGACACGGCATCGATATGAGGTCCCATATAAGACCATGTCAAGGA
CATGGCGTTGCCACCGATTTGAGAC
Found at i:48710334 original size:44 final size:43
Alignment explanation
Indices: 48710264--48710430 Score: 169
Period size: 43 Copynumber: 3.9 Consensus size: 43
48710254 GGAATGTGAA
* * *
48710264 CATCGATATGAGATATCGTGTAAGACCGTGTCTGGGACACATG
1 CATCGATATGAGATTTCGTGTAAGACCATGTCTGGGACACAGG
* * *
48710307 CCTCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATAGG
1 CATCGATATGAGATTT-CGTGTAAGACCATGTCTGGGACACAGG
* * * *
48710351 CATCG-TATCTA-ATTTCGTGTAAGACCCTGTCTGGGATAGAGG
1 CATCGATAT-GAGATTTCGTGTAAGACCATGTCTGGGACACAGG
* * *
48710393 CATCGATACTGA-ATTACATGTAAGACCACGTCTGGGAC
1 CATCGATA-TGAGATTTCGTGTAAGACCATGTCTGGGAC
48710431 GTCGACATTG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
42 29 0.28
43 43 0.42
44 30 0.29
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (43 bp):
CATCGATATGAGATTTCGTGTAAGACCATGTCTGGGACACAGG
Found at i:48710428 original size:43 final size:42
Alignment explanation
Indices: 48710321--48710430 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 42
48710311 GATTTGAGAT
* *
48710321 TTACGTGTAAGACCATGTCTGGGACATAGGCATCGTATCTAA
1 TTACGTGTAAGACCACGTCTGGGACAGAGGCATCGTATCTAA
* *
48710363 TTTCGTGTAAGACC-CTGTCTGGGATAGAGGCATCG-ATACTGAA
1 TTACGTGTAAGACCAC-GTCTGGGACAGAGGCATCGTAT-CT-AA
*
48710406 TTACATGTAAGACCACGTCTGGGAC
1 TTACGTGTAAGACCACGTCTGGGAC
48710431 GTCGACATTG
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 2 0.04
42 32 0.56
43 22 0.39
44 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTCTGGGACAGAGGCATCGTATCTAA
Found at i:48714014 original size:40 final size:40
Alignment explanation
Indices: 48713969--48714136 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
48713959 CGGAATATAA
48713969 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
48714009 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48714049 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
48714089 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48714129 CCGGATAT
1 CCGGATAT
48714137 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48722023 original size:40 final size:40
Alignment explanation
Indices: 48721978--48722145 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
48721968 CGGAATATAA
48721978 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
48722018 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48722058 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
48722098 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48722138 CCGGATAT
1 CCGGATAT
48722146 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48728977 original size:42 final size:43
Alignment explanation
Indices: 48728920--48729015 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 43
48728910 TGAGATTTAT
* *
48728920 GTGTAAGACCATGTCTAAGACATAGGCATC-ATATCT-AATTTC
1 GTGTAAGACCATGTCTAAGACAGAGGCATCGATA-CTGAATTAC
* * *
48728962 GTGTAAGACCCTGTCTAGGATAGAGGCATCGATACTGAATTAC
1 GTGTAAGACCATGTCTAAGACAGAGGCATCGATACTGAATTAC
*
48729005 ATGTAAGACCA
1 GTGTAAGACCA
48729016 CGTTTGGGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 28 0.62
43 17 0.38
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATGTCTAAGACAGAGGCATCGATACTGAATTAC
Found at i:48733738 original size:20 final size:20
Alignment explanation
Indices: 48733713--48733751 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
48733703 AAAATTTCAA
48733713 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
48733733 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
48733752 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:48734510 original size:42 final size:43
Alignment explanation
Indices: 48734448--48734568 Score: 140
Period size: 43 Copynumber: 2.8 Consensus size: 43
48734438 CGAGCTGTTA
*
48734448 CATGTAAGACCATGTTTGGGACATTGACATCGTATATGATT-T
1 CATGTAAGACCATGTTTGGGACATTGGCATCGTATATGATTAT
* * * *
48734490 CATGTAAGAACC-TGTATGGGATAATGGCATCGATATTTGATTAT
1 CATGTAAG-ACCATGTTTGGGACATTGGCATCG-TATATGATTAT
* *
48734534 -ATGTAAGACCATGTTTGGGACGTTGGCATTGTATA
1 CATGTAAGACCATGTTTGGGACATTGGCATCGTATA
48734569 AGCTTTTCAA
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.47
43 33 0.52
44 1 0.02
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (43 bp):
CATGTAAGACCATGTTTGGGACATTGGCATCGTATATGATTAT
Found at i:48734540 original size:43 final size:43
Alignment explanation
Indices: 48734448--48734554 Score: 114
Period size: 42 Copynumber: 2.5 Consensus size: 43
48734438 CGAGCTGTTA
* *
48734448 CATGTAAG-ACCATGTTTGGGACATTGACATCGTATATGATTT
1 CATGTAAGAACCATGTATGGGACAATGACATCGTATATGATTT
* * *
48734490 CATGTAAGAACC-TGTATGGGATAATGGCATCGATATTTGATTAT
1 CATGTAAGAACCATGTATGGGACAATGACATCG-TATATGATT-T
*
48734534 -ATGTAAG-ACCATGTTTGGGAC
1 CATGTAAGAACCATGTATGGGAC
48734555 GTTGGCATTG
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
42 27 0.50
43 26 0.48
44 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (43 bp):
CATGTAAGAACCATGTATGGGACAATGACATCGTATATGATTT
Found at i:48738942 original size:40 final size:40
Alignment explanation
Indices: 48738883--48739024 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
48738873 AAATTGAATG
* * *
48738883 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
48738923 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
48738963 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
48739003 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
48739025 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:48739025 original size:40 final size:39
Alignment explanation
Indices: 48738922--48739050 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
48738912 TGCTGGAAAT
* * *
48738922 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
48738962 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
48739002 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
48739042 TATATCCGG
1 TATATCCGG
48739051 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:48746989 original size:40 final size:40
Alignment explanation
Indices: 48746945--48747073 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
48746935 TGCTGGAAAT
* * *
48746945 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
48746985 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
48747025 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
48747065 TATATCCGG
1 TATATCCGG
48747074 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:48749597 original size:2 final size:2
Alignment explanation
Indices: 48749590--48749616 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
48749580 TCATGACATG
48749590 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
48749617 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48757855 original size:45 final size:40
Alignment explanation
Indices: 48757763--48757838 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
48757753 TCATATGCTA
48757763 ATTTGAAAAGAAAAGATATTAAGTTCCAAGTTAGAGGCTG
1 ATTTGAAAAGAAAAGATATTAAGTTCCAAGTTAGAGGCTG
*
48757803 ATTTGAAAAGAAAAGATATTGAGTTCCAAGTTAGAG
1 ATTTGAAAAGAAAAGATATTAAGTTCCAAGTTAGAG
48757839 ATAGAGTATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (40 bp):
ATTTGAAAAGAAAAGATATTAAGTTCCAAGTTAGAGGCTG
Found at i:48759384 original size:80 final size:79
Alignment explanation
Indices: 48759300--48759448 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 79
48759290 TATGGTAACC
* * *
48759300 CGCACCAAGGCCTACGGGACTTAACCCGGA-TATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGAGTATC-C-ACTAGCACAAATGCCTTCGGGTCTTAA
48759364 CCCGGATAGAATGACT
64 CCCGGATAGAATGACT
* * * * * *
48759380 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTATCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGA-GTATCCACTAGCACAAATGCCTTCGGGTCTTAAC
48759445 CCGG
65 CCGG
48759449 TTATAATTTC
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
80 53 0.91
81 1 0.02
82 4 0.07
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (79 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGAGTATCCACTAGCACAAATGCCTTCGGGTCTTAACC
CGGATAGAATGACT
Found at i:48759390 original size:40 final size:39
Alignment explanation
Indices: 48759341--48759448 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 39
48759331 ATCACGATTT
* *
48759341 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAAT-GACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAATCCACTA
*
48759381 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTATCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAATCCACTA
*
48759421 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
48759449 TTATAATTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
39 5 0.08
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAATCCACTA
Found at i:48767491 original size:43 final size:43
Alignment explanation
Indices: 48767421--48767502 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
48767411 GACATCGTAA
* * * *
48767421 TTGATTTCATGTAAGACCCTATTTGGGATAGTGGCATTGATAT
1 TTGATTACATGTAAGACCATATCTGGGACAGTGGCATTGATAT
* *
48767464 TTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG
1 TTGATTACATGTAAGACCATATCTGGGACAGTGGCATTG
48767503 TACGAGCTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (43 bp):
TTGATTACATGTAAGACCATATCTGGGACAGTGGCATTGATAT
Found at i:48770687 original size:47 final size:47
Alignment explanation
Indices: 48770633--48771043 Score: 633
Period size: 47 Copynumber: 8.7 Consensus size: 47
48770623 GATTTTATGC
* *
48770633 GATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* *
48770680 GATGAATGTGAAAGTGTATATATATGTGATAAAGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGT
*
48770729 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGT
* *
48770778 GATGAATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
*
48770825 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
*
48770872 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* *
48770919 GATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* * * *
48770966 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* *
48771013 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
48771044 TCCCGAAGGG
Statistics
Matches: 341, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 249 0.73
49 92 0.27
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
Found at i:48776825 original size:40 final size:41
Alignment explanation
Indices: 48776769--48776922 Score: 181
Period size: 40 Copynumber: 3.8 Consensus size: 41
48776759 CATGAGCATT
* * *
48776769 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAATCATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
***
48776810 TGAAT-ATATCCGGGCTAAGTTTCGAAGGCATTTATGCTAG
1 TGAATCATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* ** *
48776850 TG-ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TGAATCATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
48776890 TTG--TCATATCCGGGCTAAGACCCGAAGGCATTT
1 -TGAATCATATCCGGGCTAAGACCCGAAGGCATTT
48776923 GTGCAAGATA
Statistics
Matches: 100, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.91
41 7 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
TGAATCATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:48776949 original size:40 final size:40
Alignment explanation
Indices: 48776857--48776959 Score: 134
Period size: 40 Copynumber: 2.6 Consensus size: 40
48776847 TAGTGATTAT
* * ** *
48776857 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTCAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGATACCAA
*
48776897 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATACCAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGATACCAA
* *
48776937 ATCTGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
48776960 ATTGCGCTTG
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.19
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGATACCAA
Found at i:48781746 original size:206 final size:206
Alignment explanation
Indices: 48781392--48781793 Score: 759
Period size: 206 Copynumber: 2.0 Consensus size: 206
48781382 ATTTTGGGTA
48781392 TGTAACACCCCTAAATCGTGACCGTCGCCGGTGTCGGACACGAGGGGTTAACGGCCAAATCCTCT
1 TGTAACACCCCTAAATCGTGACCGTCGCCGGTGTCGGACACGAGGGGTTAACGGCCAAATCCTCT
*
48781457 CAAGGTACCAACCAATTTGACATTACCAGTCAGGCTGGGAAACTGCGTCACCGTCGCCTTAAAAA
66 CAAGGTACCAACCAATTTGACATTACCAGTCAGGCTGGGAAACTGCATCACCGTCGCCTTAAAAA
48781522 TCATATCTCGAGTTTCAAAACTCGGAAACGGGTTTCGTAAATTTTCCCTGAATTTAGACTCACAT
131 TCATATCTCGAGTTTCAAAACTCGGAAACGGGTTTCGTAAATTTTCCCTGAATTTAGACTCACAT
48781587 AAGAATAAAAT
196 AAGAATAAAAT
* *
48781598 TGTAACACCCCTAACTCGTGACCGTCGCCGGTGTCGGACATGAGGGGTTAACGGCCAAATCCTCT
1 TGTAACACCCCTAAATCGTGACCGTCGCCGGTGTCGGACACGAGGGGTTAACGGCCAAATCCTCT
48781663 CAAGGTACCAACCAATTTGACATTACCAGTCAGGCTGGGAAACTGCATCACCGTCGCCTTAAAAA
66 CAAGGTACCAACCAATTTGACATTACCAGTCAGGCTGGGAAACTGCATCACCGTCGCCTTAAAAA
* *
48781728 TCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTGGACTCACAT
131 TCATATCTCGAGTTTCAAAACTCGGAAACGGGTTTCGTAAATTTTCCCTGAATTTAGACTCACAT
48781793 A
196 A
48781794 CCCATCCATG
Statistics
Matches: 191, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
206 191 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (206 bp):
TGTAACACCCCTAAATCGTGACCGTCGCCGGTGTCGGACACGAGGGGTTAACGGCCAAATCCTCT
CAAGGTACCAACCAATTTGACATTACCAGTCAGGCTGGGAAACTGCATCACCGTCGCCTTAAAAA
TCATATCTCGAGTTTCAAAACTCGGAAACGGGTTTCGTAAATTTTCCCTGAATTTAGACTCACAT
AAGAATAAAAT
Found at i:48783078 original size:29 final size:28
Alignment explanation
Indices: 48783059--48783180 Score: 147
Period size: 29 Copynumber: 4.2 Consensus size: 28
48783049 TCGCACACCC
* * *
48783059 AGTGCCGTATTTTTCCAGCTTGCACACAT
1 AGTGCCATATATTTCCAGC-TGCACACTT
*
48783088 AGTGTCATAT-TTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGC-TGCACACTT
*
48783116 AGTGCCTTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGC-TGCACACTT
*
48783145 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGC-TGCACACTT
48783174 AGTGCCA
1 AGTGCCA
48783181 ATCTCGTCAC
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
28 24 0.29
29 60 0.71
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.32
Consensus pattern (28 bp):
AGTGCCATATATTTCCAGCTGCACACTT
Found at i:48783131 original size:57 final size:58
Alignment explanation
Indices: 48783022--48783179 Score: 183
Period size: 57 Copynumber: 2.7 Consensus size: 58
48783012 ATTTAAGCCC
* *** * * ** * *
48783022 GCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCTT
1 GCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCAT
* * *
48783080 GCACACATAGTGTCATAT-TTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCAT
1 GCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCAT
*
48783137 GCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 GCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
48783180 AATCTCGTCA
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
57 46 0.55
58 38 0.45
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (58 bp):
GCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCAT
Found at i:48789148 original size:206 final size:206
Alignment explanation
Indices: 48788794--48789203 Score: 793
Period size: 206 Copynumber: 2.0 Consensus size: 206
48788784 CTCTGATACC
48788794 AATAAAATTGTAACACCCCTAACTCGTGACCGTCGCCGGTGTCGGACACGAGGGGTTAACGGCCA
1 AATAAAATTGTAACACCCCTAACTCGTGACCGTCGCCGGTGTCGGACACGAGGGGTTAACGGCCA
*
48788859 AATCCTCTCAAGGTACCAACCAATTTGACATTATCAGTCAGGCTGGGAAACTGCGTCACCGTCGC
66 AATCCTCTCAAGGTACCAACCAATTTGACATTACCAGTCAGGCTGGGAAACTGCGTCACCGTCGC
*
48788924 CTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAG
131 CTTAAAAATCATATCTCGAGTTTCAAAACTCAGAAACTGGTTTCGTAAATTTTCCCTGAATTTAG
48788989 ACTCACATAAG
196 ACTCACATAAG
48789000 AATAAAATTGTAACACCCCTAACTCGTGACCGTCGCCGGTGTCGGACACGAGGGGTTAACGGCCA
1 AATAAAATTGTAACACCCCTAACTCGTGACCGTCGCCGGTGTCGGACACGAGGGGTTAACGGCCA
*
48789065 AATCCTCTCAAGGTACCAACCAATTTGACATTACCAGTCAGGCTGGGAAACTGCGTCACTGTCGC
66 AATCCTCTCAAGGTACCAACCAATTTGACATTACCAGTCAGGCTGGGAAACTGCGTCACCGTCGC
48789130 CTTAAAAATCATATCTCGAGTTTCAAAACTCAGAAACTGGTTTCGTAAATTTTCCCTGAATTTAG
131 CTTAAAAATCATATCTCGAGTTTCAAAACTCAGAAACTGGTTTCGTAAATTTTCCCTGAATTTAG
48789195 ACTCACATA
196 ACTCACATA
48789204 CCCATCCATG
Statistics
Matches: 201, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
206 201 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (206 bp):
AATAAAATTGTAACACCCCTAACTCGTGACCGTCGCCGGTGTCGGACACGAGGGGTTAACGGCCA
AATCCTCTCAAGGTACCAACCAATTTGACATTACCAGTCAGGCTGGGAAACTGCGTCACCGTCGC
CTTAAAAATCATATCTCGAGTTTCAAAACTCAGAAACTGGTTTCGTAAATTTTCCCTGAATTTAG
ACTCACATAAG
Found at i:48790488 original size:29 final size:29
Alignment explanation
Indices: 48790456--48790591 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
48790446 ATACCCTTCG
** * *
48790456 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
48790485 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
48790514 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
48790543 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
48790572 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
48790592 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:48790583 original size:58 final size:58
Alignment explanation
Indices: 48790431--48790590 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
48790421 AATTTAAGCC
* *** * * ** * *
48790431 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
48790489 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
48790547 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
48790591 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:48796883 original size:20 final size:20
Alignment explanation
Indices: 48796858--48796895 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
48796848 GTTTATTCGT
*
48796858 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
48796878 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
48796896 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:48798556 original size:28 final size:28
Alignment explanation
Indices: 48798524--48798592 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
48798514 GCGTAGATCA
48798524 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
48798552 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
48798580 CGATA-TACCCCTA
1 CGAAATTACCCCTA
48798593 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:48804893 original size:20 final size:20
Alignment explanation
Indices: 48804868--48804905 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
48804858 GTTTATTCGC
*
48804868 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
48804888 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
48804906 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:48806621 original size:27 final size:28
Alignment explanation
Indices: 48806541--48806625 Score: 147
Period size: 27 Copynumber: 3.1 Consensus size: 28
48806531 CACGAAATTA
48806541 CTAAAGAGCAAAATTACCGAAATTA-CC
1 CTAAAGAGCAAAATTACCGAAATTACCC
48806568 CTAAAGAGCAAAATTACCGAAATTACCC
1 CTAAAGAGCAAAATTACCGAAATTACCC
*
48806596 CTAAAGAGCAAAATTACCGATA-TACCC
1 CTAAAGAGCAAAATTACCGAAATTACCC
48806623 CTA
1 CTA
48806626 GGGTTTTAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
27 33 0.59
28 23 0.41
ACGTcount: A:0.46, C:0.25, G:0.11, T:0.19
Consensus pattern (28 bp):
CTAAAGAGCAAAATTACCGAAATTACCC
Found at i:48815093 original size:46 final size:46
Alignment explanation
Indices: 48815017--48815134 Score: 150
Period size: 46 Copynumber: 2.5 Consensus size: 46
48815007 TGTGTGAGCT
*
48815017 AGTGTAAGACTATGTCTGGGATATGCATTGGCCT-CGAGACG-TAAGCC
1 AGTGTAAGAC-ATGTCTGGGATATGCATTGG-CTACAAGACGAT-AGCC
* * *
48815064 AGTGTAAGACATGTTTGGGATATGCATTGGCTACAAGATGATAGTC
1 AGTGTAAGACATGTCTGGGATATGCATTGGCTACAAGACGATAGCC
48815110 AGTGTAAGACCATGTCTGGGATATG
1 AGTGTAAGA-CATGTCTGGGATATG
48815135 GCTTCGACTT
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
45 2 0.03
46 36 0.57
47 25 0.40
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGATATGCATTGGCTACAAGACGATAGCC
Found at i:48816855 original size:29 final size:29
Alignment explanation
Indices: 48816793--48816895 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
48816783 GTGACGAGAT
* * *
48816793 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
48816822 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
48816851 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
48816880 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48816896 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:48824874 original size:29 final size:29
Alignment explanation
Indices: 48824812--48824914 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
48824802 GTGACGAGAT
* * *
48824812 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
48824841 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
48824870 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
48824899 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48824915 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:48827609 original size:21 final size:22
Alignment explanation
Indices: 48827570--48827610 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
48827560 TCAAATTGAT
48827570 CACAAGGGCGTGTTGCCCCTTC
1 CACAAGGGCGTGTTGCCCCTTC
*
48827592 CACACGGGCGTG-TGCCCCT
1 CACAAGGGCGTGTTGCCCCT
48827611 GTGTCAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.39, G:0.29, T:0.20
Consensus pattern (22 bp):
CACAAGGGCGTGTTGCCCCTTC
Found at i:48835617 original size:43 final size:43
Alignment explanation
Indices: 48835530--48835622 Score: 107
Period size: 43 Copynumber: 2.2 Consensus size: 43
48835520 GATATTGTGC
* * * * *
48835530 AAGACCGTGTCTGGGACATAGGCCTCGATTTGAGATTTCGTGT
1 AAGACCATATCTGGGACAGAGGCCTCGATTTGAGATTACATGT
* *
48835573 AAGACCATATCTGGGACAGAGGCTTCTATATTGA-ATTACATGT
1 AAGACCATATCTGGGACAGAGGCCTCGAT-TTGAGATTACATGT
48835616 AAGACCA
1 AAGACCA
48835623 CGTCTGGAAC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 38 0.90
44 4 0.10
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (43 bp):
AAGACCATATCTGGGACAGAGGCCTCGATTTGAGATTACATGT
Found at i:48855742 original size:23 final size:22
Alignment explanation
Indices: 48855716--48855765 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
48855706 AACTCACCAC
*
48855716 AGCTCGTATGAGCTTACCATTTT
1 AGCTCGTATAAGCTTACCA-TTT
* *
48855739 AGCTCTTTTAAGCTTACCATTT
1 AGCTCGTATAAGCTTACCATTT
48855761 AGCTC
1 AGCTC
48855766 TTCGGAGCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (22 bp):
AGCTCGTATAAGCTTACCATTT
Found at i:48855774 original size:22 final size:23
Alignment explanation
Indices: 48855725--48855778 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
48855715 CAGCTCGTAT
**
48855725 GAGCTTACCATTTTAGCTCTTTT
1 GAGCTTACCATTTTAGCTCTTCG
*
48855748 AAGCTTACCA-TTTAGCTCTTCG
1 GAGCTTACCATTTTAGCTCTTCG
48855770 GAGCTTACC
1 GAGCTTACC
48855779 GTTTCAGTCC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (23 bp):
GAGCTTACCATTTTAGCTCTTCG
Found at i:48865066 original size:42 final size:42
Alignment explanation
Indices: 48864969--48865121 Score: 175
Period size: 42 Copynumber: 3.6 Consensus size: 42
48864959 TACCATACCA
* **
48864969 ATGCCATATCCCAGATATGG-TTTACATG-GGATCTTGTATCG
1 ATGCCATATCCCAGATATGGTTTTACATGAAG-TCTCATATCG
* * *
48865010 ATGCTAATAGCCCAGCTATGGTTTTACATGAAGTCTCATATCG
1 ATGC-CATATCCCAGATATGGTTTTACATGAAGTCTCATATCG
* *
48865053 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGTTTTACATGAAGTCTCATATCG
* * *
48865095 ATACCATATCCCAGATAAGGTCTTACA
1 ATGCCATATCCCAGATATGGTTTTACA
48865122 CATAGTCTCA
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
41 4 0.04
42 71 0.74
43 20 0.21
44 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTTTTACATGAAGTCTCATATCG
Found at i:48865129 original size:42 final size:42
Alignment explanation
Indices: 48865033--48865131 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
48865023 AGCTATGGTT
* * * *
48865033 TTACATGAAGTCTCATATCGATGCCATATCCCAGATATGGTC
1 TTACATCAAGTCTCATATAGATACCATATCCCAGATAAGGTC
*
48865075 TTACATGAAGTCTCATATAGATACCATATCCCAGATAAGGTC
1 TTACATCAAGTCTCATATAGATACCATATCCCAGATAAGGTC
48865117 TTACA-CATAGTCTCA
1 TTACATCA-AGTCTCA
48865132 GTAACCCTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 1 0.02
42 51 0.98
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (42 bp):
TTACATCAAGTCTCATATAGATACCATATCCCAGATAAGGTC
Found at i:48867578 original size:26 final size:24
Alignment explanation
Indices: 48867547--48867615 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
48867537 AGACTCATCA
*
48867547 CAGCTCATTTGAGCTTACCGATATAT
1 CAGCTCATTAGAGCTTACCG-T-TAT
* * *
48867573 CAGCTCGTAAGAGCTTACTGTTAT
1 CAGCTCATTAGAGCTTACCGTTAT
*
48867597 CAGCTCATTAGAGCCTACC
1 CAGCTCATTAGAGCTTACC
48867616 ATTTCAACTC
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
24 18 0.51
25 1 0.03
26 16 0.46
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (24 bp):
CAGCTCATTAGAGCTTACCGTTAT
Found at i:48867634 original size:47 final size:48
Alignment explanation
Indices: 48867547--48867655 Score: 125
Period size: 47 Copynumber: 2.3 Consensus size: 48
48867537 AGACTCATCA
* * *
48867547 CAGCTCATTTGAGCTTACCGATATATCAGCTCGTAAGAGCTTACTGTTAT
1 CAGCTCATTAGAGCCTACCGATATATCAACTCGTAAGAGCTTACTG-T-T
* *
48867597 CAGCTCATTAGAGCCTACC-AT-T-TCAACTCGTATGAGCTTATTGTT
1 CAGCTCATTAGAGCCTACCGATATATCAACTCGTAAGAGCTTACTGTT
*
48867642 CAGCTCAATAGAGC
1 CAGCTCATTAGAGC
48867656 TTACTATTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
45 14 0.26
46 1 0.02
47 18 0.34
48 1 0.02
49 2 0.04
50 17 0.32
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (48 bp):
CAGCTCATTAGAGCCTACCGATATATCAACTCGTAAGAGCTTACTGTT
Found at i:48870615 original size:29 final size:29
Alignment explanation
Indices: 48870581--48870770 Score: 256
Period size: 29 Copynumber: 6.6 Consensus size: 29
48870571 TACTCGATTT
** * *
48870581 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
48870610 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
48870639 CGCTCACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
48870668 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48870697 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48870726 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48870755 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48870771 ATCTCGTCAC
Statistics
Matches: 143, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
28 2 0.01
29 141 0.99
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:48878040 original size:29 final size:29
Alignment explanation
Indices: 48878006--48878166 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
48877996 TACTCGATTT
** * *
48878006 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
48878035 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
48878064 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
48878093 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48878122 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48878151 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48878167 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:48884301 original size:27 final size:28
Alignment explanation
Indices: 48884244--48884313 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
48884234 AAATTTGTAC
**
48884244 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
48884272 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
48884299 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
48884314 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Done.