Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 160 of 410
Found at i:48884322 original size:27 final size:27
Alignment explanation
Indices: 48884244--48884325 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
48884234 AAATTTGTAC
* *
48884244 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
48884272 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
48884299 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
48884326 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:48892220 original size:27 final size:28
Alignment explanation
Indices: 48892163--48892232 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
48892153 AAATTTGTAC
**
48892163 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
48892191 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
48892218 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
48892233 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:48892241 original size:27 final size:27
Alignment explanation
Indices: 48892163--48892244 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
48892153 AAATTTGTAC
* *
48892163 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
48892191 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
48892218 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
48892245 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:48897513 original size:27 final size:26
Alignment explanation
Indices: 48897464--48897524 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
48897454 AGCGAGGCTG
*
48897464 CCAGATATTGTGACGAAGTCACCAGA
1 CCAGATATTGTGACGAAGCCACCAGA
* * *
48897490 TCCAGATATTGTGGCTAGGCCACCAGA
1 -CCAGATATTGTGACGAAGCCACCAGA
*
48897517 ACAGATAT
1 CCAGATAT
48897525 ATATATATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (26 bp):
CCAGATATTGTGACGAAGCCACCAGA
Found at i:48905070 original size:27 final size:26
Alignment explanation
Indices: 48905022--48905073 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
48905012 GAGAGGCTGC
*
48905022 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
48905048 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
48905074 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:48908739 original size:55 final size:54
Alignment explanation
Indices: 48908513--48908768 Score: 203
Period size: 55 Copynumber: 4.8 Consensus size: 54
48908503 ACACGGGTAC
** * * *
48908513 CTTACC-ATTGCCATGAATTGTCATGGTCTTACGTGGTAT-CTT---TTTGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
** *
48908562 CTTACC-ATTGCCATATCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTA-GAAA
* * * ** *
48908615 CTCACCAA-TGCCTTGCCTTGGCATGGTCTTACAT-GTGA-CCTTTGAGTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGT-ATCC-TT-ACCT-TAGAAA
* * *
48908670 CTTATCAA-TACCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
*
48908723 CCTTACCAATTGCCATGCCTTTG-CATGGTCTTACATGGTATTCTTA
1 -CTTACCAATTGCCATGCC-TTGACATGGTCTTACATGGTATCCTTA
48908769 AACCCTAATG
Statistics
Matches: 164, Mismatches: 27, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
49 34 0.21
50 3 0.02
52 4 0.02
53 39 0.24
54 13 0.08
55 64 0.39
56 7 0.04
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
Found at i:48909137 original size:30 final size:30
Alignment explanation
Indices: 48909103--48909159 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
48909093 TCCTTGACTC
*
48909103 AAACTTTGGCAAAATTACACTTTTGCCGTT
1 AAACTTTGACAAAATTACACTTTTGCCGTT
* * *
48909133 AAACTTTTACATATTTACACTTTTGCC
1 AAACTTTGACAAAATTACACTTTTGCC
48909160 TCAAGACTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (30 bp):
AAACTTTGACAAAATTACACTTTTGCCGTT
Found at i:48914805 original size:78 final size:76
Alignment explanation
Indices: 48914678--48914833 Score: 285
Period size: 78 Copynumber: 2.0 Consensus size: 76
48914668 AAATATTTTA
*
48914678 AAATCGTCAGGAGTCGACACTATCAACATATAAGTATGGCATGTATAGCTAGACTCTTACTCATA
1 AAATCGACAGGAGTCGACACTATCAACATATAAGTATGGCATGTATAGCTAGACTCTTACTCATA
48914743 CTAAATATTCC
66 CTAAATATTCC
48914754 AAATCGACAGGAGTCGTCACACTATCAACATATAAGTATGGCATGTATAGCTAGACTCTTACTCA
1 AAATCGACAGGAGTCG--ACACTATCAACATATAAGTATGGCATGTATAGCTAGACTCTTACTCA
48914819 TACTAAATATTCC
64 TACTAAATATTCC
48914832 AA
1 AA
48914834 GAACTGACTA
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
76 15 0.19
78 62 0.81
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (76 bp):
AAATCGACAGGAGTCGACACTATCAACATATAAGTATGGCATGTATAGCTAGACTCTTACTCATA
CTAAATATTCC
Found at i:48916126 original size:16 final size:16
Alignment explanation
Indices: 48916107--48916137 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48916097 CTTCTTTACT
48916107 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
48916123 TACTTACTTACTTAA
1 TACTCACTTACTTAA
48916138 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:48916143 original size:20 final size:20
Alignment explanation
Indices: 48916103--48916143 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
48916093 TAAACTTCTT
* *
48916103 TACTTACTCACTTACTTAAA
1 TACTTACTCACTTAATCAAA
*
48916123 TACTTACTTACTTAATCAAA
1 TACTTACTCACTTAATCAAA
48916143 T
1 T
48916144 TTATTAATAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (20 bp):
TACTTACTCACTTAATCAAA
Found at i:48916456 original size:53 final size:53
Alignment explanation
Indices: 48916351--48916583 Score: 251
Period size: 55 Copynumber: 4.4 Consensus size: 53
48916341 ATGACTTGTT
* * * * *
48916351 ATGGTCTTACGTGGTATCCTT---TT-GGAACTTACCATTGCCATGTCTCGAC
1 ATGGTCTTACATGGTATCCTTGCCTTATGAACTTACCAATGCCATGCCTTGAC
* *
48916400 ATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
1 ATGGTCTTACATGGTATCCTTGCCTTATGAACTTACCAATGCCATGCCTTGAC
* * *
48916453 ATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGTCTTGAC
1 ATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTTACCAATGCCATGCCTTGAC
** * *
48916508 ATGGTCTTACATGGTATCCTTGCCTTAAAAACCTTACCAATTTCCATGCCTTGGC
1 ATGGTCTTACATGGTATCCTTGCCTTATGAA-CTTACCAA-TGCCATGCCTTGAC
*
48916563 ATGGTCTTACAAGGTATCCTT
1 ATGGTCTTACATGGTATCCTT
48916584 AAACCCTAAT
Statistics
Matches: 154, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
49 20 0.13
52 4 0.03
53 46 0.30
54 8 0.05
55 74 0.48
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
ATGGTCTTACATGGTATCCTTGCCTTATGAACTTACCAATGCCATGCCTTGAC
Found at i:48916519 original size:55 final size:54
Alignment explanation
Indices: 48916375--48916583 Score: 253
Period size: 55 Copynumber: 3.9 Consensus size: 54
48916365 TATCCTTTTG
* * *
48916375 GAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT-
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
48916428 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* *
48916482 GTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-A
1 G-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * *
48916536 AAACCTTACCAATTTCCATGCCTTGGCATGGTCTTACAAGGTATCCTT
1 GAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
48916584 AAACCCTAAT
Statistics
Matches: 133, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 46 0.35
54 9 0.07
55 74 0.56
56 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (54 bp):
GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:48916522 original size:108 final size:110
Alignment explanation
Indices: 48916376--48916573 Score: 319
Period size: 108 Copynumber: 1.8 Consensus size: 110
48916366 ATCCTTTTGG
* **
48916376 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAAAAACCTCACCAAT
48916439 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
48916484 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAAAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAAAAACCTCACCAAT
*
48916549 TTCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
48916574 AGGTATCCTT
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
108 50 0.62
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAAAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:48923163 original size:27 final size:27
Alignment explanation
Indices: 48923077--48923247 Score: 114
Period size: 27 Copynumber: 6.3 Consensus size: 27
48923067 CAAAACAATC
* * * * *
48923077 ATTTTACCCTACAAAGGTATATCGGTC
1 ATTTTACACTACAAGGGTATTTCGATA
*
48923104 ATTTTACACTATAAGGGTATTTC-AGTA
1 ATTTTACACTACAAGGGTATTTCGA-TA
* *
48923131 ACTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTCGATA
* *
48923158 ATTTTACA-AATCGAGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGATA
** * * *
48923185 ATTTTACAAAATCGAGGGTGTTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTCGATA
* * * *
48923213 ATTTTACA-AATCGAGGGTGTTTCGTTA
1 ATTTTACACTA-CAAGGGTATTTCGATA
48923240 ATTTTACA
1 ATTTTACA
48923248 AATCGATGGT
Statistics
Matches: 124, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 97 0.78
28 26 0.21
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:48923248 original size:27 final size:27
Alignment explanation
Indices: 48923117--48923353 Score: 248
Period size: 27 Copynumber: 8.8 Consensus size: 27
48923107 TTACACTATA
* * * *
48923117 AGGGTATTTCAGTAACTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* *
48923144 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
48923171 AGGGTATTTCGATAATTTTACAAAATCG
1 AGGGTATTTCGGTAATTTTAC-AAATCG
*
48923199 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
48923226 AGGGTGTTTCGTTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
48923253 ATGGTATTTCAGTAATTTAAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
48923279 AGGGTATTTTAGTAATTTTACAAATTTG
1 AGGGTATTTCGGTAATTTTACAAA-TCG
*
48923307 -GGGTATTTCGGTAATTTTACAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
48923332 AGGGGTATTTCGGTAATTTTAC
1 A-GGGTATTTCGGTAATTTTAC
48923354 TTCGGTAATT
Statistics
Matches: 180, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
26 23 0.13
27 129 0.72
28 28 0.16
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:48923323 original size:80 final size:82
Alignment explanation
Indices: 48923116--48923353 Score: 254
Period size: 80 Copynumber: 2.9 Consensus size: 82
48923106 TTTACACTAT
* * * *
48923116 AAGGGTATTTCAGTAACTTTAC-ACTACAAGGGTATTTTGATAATTTTACAAATCGAGGGTATTT
1 AAGGGTATTTCAGTAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTT
48923180 CGATAATTTTACAAAATC
65 CGATAATTTTACAAAATC
* * * * * *
48923198 GAGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGTTAATTTTACAAATCGATGGTATTTC
1 AAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTC
*
48923263 -AGTAA-TTTA-ACAATC
66 GA-TAATTTTACAAAATC
* * * *
48923278 AAGGGTATTTTAGTAATTTTACAAATTTG-GGGTATTTCGGTAATTTTACAAAT-TAGGGGTATT
1 AAGGGTATTTCAGTAATTTTACAAA-TCGAGGGTATTTCGATAATTTTACAAATCGA-GGGTATT
*
48923341 TCGGTAATTTTAC
64 TCGATAATTTTAC
48923354 TTCGGTAATT
Statistics
Matches: 128, Mismatches: 21, Indels: 14
0.79 0.13 0.09
Matches are distributed among these distances:
79 1 0.01
80 59 0.46
81 11 0.09
82 55 0.43
83 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (82 bp):
AAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTC
GATAATTTTACAAAATC
Found at i:48923359 original size:14 final size:14
Alignment explanation
Indices: 48923340--48923367 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
48923330 TTAGGGGTAT
48923340 TTCGGTAATTTTAC
1 TTCGGTAATTTTAC
48923354 TTCGGTAATTTTAC
1 TTCGGTAATTTTAC
48923368 AAATCGAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
TTCGGTAATTTTAC
Found at i:48923362 original size:41 final size:41
Alignment explanation
Indices: 48923313--48923391 Score: 133
Period size: 41 Copynumber: 1.9 Consensus size: 41
48923303 TTTGGGGTAT
48923313 TTCGGTAATTTTACAAATTAG-GGGTATTTCGGTAATTTTAC
1 TTCGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTTAC
*
48923354 TTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTT
1 TTCGGTAATTTTACAAATAGAGGGTATTTCGGTAATTT
48923392 CTCTTTATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
40 2 0.06
41 34 0.94
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (41 bp):
TTCGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTTAC
Found at i:48930477 original size:24 final size:24
Alignment explanation
Indices: 48930430--48930534 Score: 104
Period size: 24 Copynumber: 4.2 Consensus size: 24
48930420 CTGCTCATTT
48930430 GAGCTTACTGATATATCAGCTCATAA
1 GAGCTTACTG-T-TATCAGCTCATAA
* *
48930456 GAGCTTACTGTTATCAGTTCATTA
1 GAGCTTACTGTTATCAGCTCATAA
** * *
48930480 GAGCTTACCATT-TCAGCTCGTAT
1 GAGCTTACTGTTATCAGCTCATAA
*
48930503 GAGCTTACTGTTCATCAGCTCAGAA
1 GAGCTTACTGTT-ATCAGCTCATAA
48930528 GGAGCTT
1 -GAGCTT
48930535 TCTGATCATG
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
23 17 0.27
24 21 0.33
25 9 0.14
26 16 0.25
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (24 bp):
GAGCTTACTGTTATCAGCTCATAA
Found at i:48931243 original size:23 final size:23
Alignment explanation
Indices: 48931213--48931257 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
48931203 ATGGATTATG
48931213 TATGATGTTAAATAGGTATTTTT
1 TATGATGTTAAATAGGTATTTTT
48931236 TATGATGTTAAATAGGTATTTT
1 TATGATGTTAAATAGGTATTTT
48931258 GGTATATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (23 bp):
TATGATGTTAAATAGGTATTTTT
Found at i:48938613 original size:43 final size:44
Alignment explanation
Indices: 48938543--48938630 Score: 133
Period size: 43 Copynumber: 2.0 Consensus size: 44
48938533 TACATAAATC
* * *
48938543 GCATCCATCATGAACTTGGACCACTCAACGAGCTTGGAT-GCTT
1 GCATCCATAATGAACTTAGACCACTCAACGAGCTCGGATGGCTT
*
48938586 GCATCCATAATGAACTTAGACCTCTCAACGAGCTCGGATGGCTT
1 GCATCCATAATGAACTTAGACCACTCAACGAGCTCGGATGGCTT
48938630 G
1 G
48938631 TATAAGAGAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 35 0.88
44 5 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (44 bp):
GCATCCATAATGAACTTAGACCACTCAACGAGCTCGGATGGCTT
Found at i:48940120 original size:51 final size:51
Alignment explanation
Indices: 48940044--48940188 Score: 184
Period size: 50 Copynumber: 2.9 Consensus size: 51
48940034 TATTGTGAGG
* * *
48940044 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGA
* * * * ** *
48940095 TCACGTGTGTAGTACTAAGTGCAGGCCACTATGTGTATCAAAT-GGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGA
*
48940145 TCACGTGTGTAGTACTAAGTGCACGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
48940189 GCTTTGGCTA
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 41 0.53
51 37 0.47
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGA
Found at i:48944212 original size:68 final size:67
Alignment explanation
Indices: 48944140--48944289 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
48944130 CATCATGTGT
* * * *
48944140 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
48944202 ATGTAG
62 ATGTAG
** * *
48944208 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
48944273 AG
66 AG
48944275 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
48944290 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:48944245 original size:64 final size:64
Alignment explanation
Indices: 48944164--48944347 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
48944154 AGACATTATG
* *
48944164 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
48944228 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
48944293 AA
63 AA
* * * *
48944295 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
48944348 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:48948663 original size:68 final size:67
Alignment explanation
Indices: 48948591--48948740 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
48948581 CATCATGTGT
* * * *
48948591 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
48948653 ATGTAG
62 ATGTAG
** * *
48948659 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
48948724 AG
66 AG
48948726 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
48948741 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:48948696 original size:64 final size:64
Alignment explanation
Indices: 48948615--48948798 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
48948605 AGACATTATG
* *
48948615 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
48948679 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
48948744 AA
63 AA
* * * *
48948746 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
48948799 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:48956723 original size:66 final size:64
Alignment explanation
Indices: 48956597--48956723 Score: 157
Period size: 66 Copynumber: 1.9 Consensus size: 64
48956587 TACTATGTGT
* * * *
48956597 ACACCATGTAGACAAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGG
1 ACACCATGTAGACAAGAGCTACGAGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGAAGG
* *
48956662 ACACCATGTAGACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGAC-A-AGAGCTACGAGATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
48956724 TTCACCATGT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
65 13 0.25
66 24 0.45
67 14 0.26
68 2 0.04
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.20
Consensus pattern (64 bp):
ACACCATGTAGACAAGAGCTACGAGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAAGG
Found at i:48961154 original size:66 final size:65
Alignment explanation
Indices: 48961027--48961154 Score: 177
Period size: 66 Copynumber: 1.9 Consensus size: 65
48961017 TACTATGTGT
* * *
48961027 ACACCATGTAGACAAGAGAGCTACGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAG
1 ACACCATGTAGACAAGAGAGCTACGGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGAAG
48961092 G
65 G
* *
48961093 ACACCATGTAGACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTACG-GATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
48961155 TTCACCATGT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
66 48 0.87
67 5 0.09
68 2 0.04
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (65 bp):
ACACCATGTAGACAAGAGAGCTACGGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAAGG
Found at i:48966808 original size:30 final size:30
Alignment explanation
Indices: 48966772--48966837 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
48966762 CACATGGTTG
48966772 GACACACGGGCATGTGTCTAGGCCATGCGT
1 GACACACGGGCATGTGTCTAGGCCATGCGT
* *
48966802 GACACACGGGCATGTGTCTAGGTCATGTGT
1 GACACACGGGCATGTGTCTAGGCCATGCGT
48966832 GACACA
1 GACACA
48966838 TGGTTCCCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.23, C:0.24, G:0.32, T:0.21
Consensus pattern (30 bp):
GACACACGGGCATGTGTCTAGGCCATGCGT
Found at i:48974426 original size:37 final size:37
Alignment explanation
Indices: 48974376--48974472 Score: 194
Period size: 37 Copynumber: 2.6 Consensus size: 37
48974366 TTATTACGAA
48974376 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
48974413 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
48974450 GTCTTACCCGGACATAATCTCCA
1 GTCTTACCCGGACATAATCTCCA
48974473 AGTTTCATGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:48974575 original size:48 final size:48
Alignment explanation
Indices: 48974506--48975510 Score: 1629
Period size: 48 Copynumber: 21.0 Consensus size: 48
48974496 TGTTACAACA
* * *
48974506 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATTT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
48974554 TTCACATTCGCCATTCAGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48974602 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
48974650 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48974698 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
48974746 TTCACATTCGCCATTCGGCTTTACCATATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48974794 TTCACATTAGCCATTCGGCTTTACCATATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48974842 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48974890 TTCACATTAGGCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
48974938 TTCACATTCGCCATTCAGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48974986 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48975034 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48975082 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48975130 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48975178 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48975226 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
48975274 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48975322 TTCACATTAGCCATTCGGCTTTACCACATATACATA--TCACACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48975368 TTCACATTAGCCATTCGGCTTTACAACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48975416 TTCACATTAGCCATTCGGC-TTACCACATATACATATCACATATACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48975463 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
48975511 ATATTTATCT
Statistics
Matches: 887, Mismatches: 67, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
46 43 0.05
47 43 0.05
48 801 0.90
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:48975457 original size:13 final size:13
Alignment explanation
Indices: 48975439--48975469 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
48975429 TTCGGCTTAC
48975439 CACATATACATAT
1 CACATATACATAT
*
48975452 CACATATACATTT
1 CACATATACATAT
48975465 CACAT
1 CACAT
48975470 TAGCCATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (13 bp):
CACATATACATAT
Found at i:48978879 original size:40 final size:40
Alignment explanation
Indices: 48978816--48979007 Score: 332
Period size: 40 Copynumber: 4.8 Consensus size: 40
48978806 CCAGCATGAT
* * *
48978816 TGCTCTTCGGGACCTAG-CTCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAA
*
48978856 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
48978896 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
48978936 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
48978976 TGCTCTTCGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
48979008 CTCAATTCTC
Statistics
Matches: 148, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
40 147 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:48980241 original size:37 final size:37
Alignment explanation
Indices: 48980191--48980277 Score: 165
Period size: 37 Copynumber: 2.4 Consensus size: 37
48980181 GAAGTCTTAT
48980191 CCGGACATAATCTCCACACGTAGTCATCGGGTCATAC
1 CCGGACATAATCTCCACACGTAGTCATCGGGTCATAC
*
48980228 CCGGACATAATCTCCACACGTAGTCATCGGGTCTTAC
1 CCGGACATAATCTCCACACGTAGTCATCGGGTCATAC
48980265 CCGGACATAATCT
1 CCGGACATAATCT
48980278 TCAAGTTTCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
CCGGACATAATCTCCACACGTAGTCATCGGGTCATAC
Found at i:48980379 original size:48 final size:48
Alignment explanation
Indices: 48980314--48981798 Score: 2364
Period size: 48 Copynumber: 31.0 Consensus size: 48
48980304 TGTTACAACA
* * * *
48980314 TTCACATTAGCCATTTGGCTTTACCACATATTCATATCTCATACATTT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
48980362 TTCACATTCGCCATTTGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
48980410 TTCATATTAGCCATTCGACTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48980458 TTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
48980506 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48980554 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48980602 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48980650 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48980698 TTCACATTATCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
48980746 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48980794 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48980842 TTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
48980890 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48980938 TTCACATTAGCCATTCAGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48980986 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
48981034 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48981082 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48981130 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48981178 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
48981226 TTCACATTTGCCATTTGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
48981274 TTCACATTAGCCATTCGGCTTTACCACATATACATATCT-ATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48981321 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48981369 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
48981417 TTTACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48981465 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTGATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
48981513 TTCACATTAGCCATTCGGCTTTACCACATATGCATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
48981561 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
48981609 TTCAGATTAGCCATTCGGCTTTACCACATATACATA--TCACACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
48981655 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
48981703 TTCACATTAGCCATTCGGCCTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
48981751 TTTACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
48981799 ATATTTATCT
Statistics
Matches: 1333, Mismatches: 101, Indels: 6
0.93 0.07 0.00
Matches are distributed among these distances:
46 43 0.03
47 46 0.03
48 1244 0.93
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:48992414 original size:39 final size:40
Alignment explanation
Indices: 48992304--48992566 Score: 290
Period size: 40 Copynumber: 6.6 Consensus size: 40
48992294 GCTACTCGTT
*
48992304 CAAATGCCTTCGGGACATAGCCC-GG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGGATT-TAGTAACTCGCA
*
48992344 TAAATGCCTTCGGGACTTAGCCC-GGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGGATTTAGTAACTCGCA
* *
48992384 CAAATTCCTTTGGGCTTAGCCCGGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGGATTTAGTAACTCGCA
* * *
48992423 TAAATGCCTTCGGGGCTTA-ACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGGCTTAGCCCGGGATTTAGTAACTCGCA
48992463 CAAATGCCTTCGGGCTTAGCCCGGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGGATTTAGTAACTCGCA
* * * * * *
48992502 CAAATGCCTTCGGATCTTAGTCC-GAATATAGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGGATTTAGTAAC-TCGCA
48992543 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG
48992567 ACATCATTCG
Statistics
Matches: 192, Mismatches: 21, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
39 69 0.36
40 112 0.58
41 11 0.06
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGCTTAGCCCGGGATTTAGTAACTCGCA
Found at i:48992415 original size:79 final size:79
Alignment explanation
Indices: 48992304--48992566 Score: 343
Period size: 79 Copynumber: 3.3 Consensus size: 79
48992294 GCTACTCGTT
* *
48992304 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGGAT-TAGTAACTCGCATAAATGCCTTCGGGACTTAGCCCG
48992368 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * * *
48992384 CAAATTCCTTTGGGCTTAGCCCGGGATTAGTAACTCGCATAAATGCCTTCGGGGCTTAACCTGGA
1 CAAATGCCTTCGGGCTTAGCCCGGGATTAGTAACTCGCATAAATGCCTTCGGGACTTAGCCCGGA
48992449 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
* * *
48992463 CAAATGCCTTCGGGCTTAGCCCGGGATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGA
1 CAAATGCCTTCGGGCTTAGCCCGGGATTAGTAACTCGCATAAATGCCTTCGGGA-CTTAGCCCGG
* * *
48992527 ATATAGTCACTTAGCA
65 ATTTAGTAAC-TCGCA
48992543 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG
48992567 ACATCATTCG
Statistics
Matches: 161, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
78 2 0.01
79 126 0.78
80 33 0.20
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGGATTAGTAACTCGCATAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:48996000 original size:47 final size:47
Alignment explanation
Indices: 48995931--48996319 Score: 598
Period size: 47 Copynumber: 8.3 Consensus size: 47
48995921 CCCTTCGAGA
* *
48995931 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
48995978 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
48996025 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATCCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
48996072 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
48996119 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
48996166 CCTATCACATATATATACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
48996213 CTTATCACATATATATACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
48996260 CTTATCACATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
48996307 CTTATCACATATA
1 CTTATCACATATA
48996320 CATATCTTGT
Statistics
Matches: 317, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 317 1.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:48998946 original size:239 final size:241
Alignment explanation
Indices: 48998471--48998955 Score: 579
Period size: 239 Copynumber: 2.0 Consensus size: 241
48998461 TGCAAGTCCA
* * * *
48998471 CCCTTTTTATTTCATGCACTAATAGATCCTTATGTTTTGACCTATCACATTTCAAAAGTGTCACA
1 CCCTTTTGATTACATGCACTAATAGATCCTTATGATTAGACCTATCACATTTCAAAAGTGTCACA
* *
48998536 CATAAGTCCTATTGACTAAATTCACATGCAATTTAGTAAATCAAAGCTTAAAACTTTCACACATT
66 CA-AAGTCCTATTGACTAAATTCACATGCAATTAACTAAATCAAAGCTTAAAACTTTCACACATT
* * * * * * * * *
48998601 CGTATTCACATATAATAGTCATAAAATATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTC
130 CATATTCACATATAATAGCCATAAAATATCACGACTAAATAATTTGATGACTCGATTTAGCGGTC
* * *
48998666 CCGAAACCACTTTTCGACTAGGGTCAAATTAGGGGTGTCACATC-CT
195 CCGAAACCACTTTCCGACTAGGGTCAAATTAGGGCTGTCACAACTCT
* * *
48998712 CCCTTTTGATTACATGCACTATTTGATCCTTGTAGATTAG-CCTATCACATTTCAAAAGTGTCAC
1 CCCTTTTGATTACATGCACTAATAGATCCTTAT-GATTAGACCTATCACATTTCAAAAGTGTCAC
* * * *
48998776 AC-AAGTCCTA-TGTACTACATTCACATGTAATTAACTAAATCGAAGCTTAAAATTTTCACACAT
65 ACAAAGTCCTATTG-ACTAAATTCACATGCAATTAACTAAATCAAAGCTTAAAACTTTCACACAT
** * * *
48998839 TCATATTCACATATTTTAGACCAT-AAATATCAC-ATTAAAATAATTTGGTGACTCGGTTTAGCG
129 TCATATTCACATATAATAG-CCATAAAATATCACGACT-AAATAATTTGATGACTCGATTTAGCG
* *
48998902 GTCCCGAAACCGCTTTCCGACTAGGGTC-ACTATAGGGCTGTCACAACTCT
192 GTCCCGAAACCACTTTCCGACTAGGGTCAAAT-TAGGGCTGTCACAACTCT
48998952 CCCT
1 CCCT
48998956 CACTTATGAA
Statistics
Matches: 206, Mismatches: 32, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
238 5 0.02
239 134 0.65
240 9 0.04
241 54 0.26
242 4 0.02
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (241 bp):
CCCTTTTGATTACATGCACTAATAGATCCTTATGATTAGACCTATCACATTTCAAAAGTGTCACA
CAAAGTCCTATTGACTAAATTCACATGCAATTAACTAAATCAAAGCTTAAAACTTTCACACATTC
ATATTCACATATAATAGCCATAAAATATCACGACTAAATAATTTGATGACTCGATTTAGCGGTCC
CGAAACCACTTTCCGACTAGGGTCAAATTAGGGCTGTCACAACTCT
Found at i:49005128 original size:238 final size:240
Alignment explanation
Indices: 49004707--49005165 Score: 563
Period size: 238 Copynumber: 1.9 Consensus size: 240
49004697 TGCAAGTCCA
* * * *
49004707 CCCTTTTTATTTCATGCACTAATAGATCCTTATGTTTTGACCTATCACATTTCAAAAGTGTCACA
1 CCCTTTTGATTACATGCACTAATAGATCCTTATGATTAGACCTATCACATTTCAAAAGTGTCACA
* *
49004772 CATAAGTCCTATTGACTAAATTCACATGCAATTTAGTAAATCAAAGCTTAAAACTTTCACACATT
66 CA-AAGTCCTATTGACTAAATTCACATGCAATTAACTAAATCAAAGCTTAAAACTTTCACACATT
* * * * * * * * *
49004837 CGTATTCACATATAATAGTCATAAAATATGACGGCTAATTATTTTTATGACTCGATTTTGTGGT-
130 CATATTCACATATAATAGCCATAAAATATCACGACTAAATAATTTGATGACTCGATTTAGCGGTC
49004901 CCGAAAACCACTTT-CGACTAGGGTCAAATTAGGGGTGTCACATCCT
195 CCG-AAACCACTTTCCGACTAGGGTCAAATTAGGGGTGTCACATCCT
* * *
49004947 CCCTTTTGATTACATGCACTATTTGATCCTTGTAGATTAG-CCTATCACATTTCAAAAGTGTCAC
1 CCCTTTTGATTACATGCACTAATAGATCCTTAT-GATTAGACCTATCACATTTCAAAAGTGTCAC
* * * *
49005011 AC-AAGTCCTA-TGTACTACATTCACATGTAATTAACTAAATCGAAGCTTAAAATTTTCACACAT
65 ACAAAGTCCTATTG-ACTAAATTCACATGCAATTAACTAAATCAAAGCTTAAAACTTTCACACAT
** * * *
49005074 TCATATTCACATATTTTAGACCAT-AAATATCAC-ATTAAAATAATTTGGTGACTCGGTTTAGCG
129 TCATATTCACATATAATAG-CCATAAAATATCACGACT-AAATAATTTGATGACTCGATTTAGCG
*
49005137 GTCCCGAAACCGCTTTCCGACTAGGGTCA
192 GTCCCGAAACCACTTTCCGACTAGGGTCA
49005166 CTATAGGGCT
Statistics
Matches: 185, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
237 3 0.02
238 106 0.57
239 18 0.10
240 54 0.29
241 4 0.02
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (240 bp):
CCCTTTTGATTACATGCACTAATAGATCCTTATGATTAGACCTATCACATTTCAAAAGTGTCACA
CAAAGTCCTATTGACTAAATTCACATGCAATTAACTAAATCAAAGCTTAAAACTTTCACACATTC
ATATTCACATATAATAGCCATAAAATATCACGACTAAATAATTTGATGACTCGATTTAGCGGTCC
CGAAACCACTTTCCGACTAGGGTCAAATTAGGGGTGTCACATCCT
Found at i:49011466 original size:79 final size:80
Alignment explanation
Indices: 49011347--49011609 Score: 311
Period size: 79 Copynumber: 3.3 Consensus size: 80
49011337 GCTACTCGTT
* * *
49011347 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCATAAATTCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGGAT-TAGTAACTCGCATAAATGCCTTCGGGACTTAACCCG
49011411 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
* * *
49011427 CAAATGCCTTCGGG-CTTAGCCCGGGATTAGTAACGCGCATAAATGCCTTTGGGACTTAACCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGGATTAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGG
*
49011491 ATTTAGTAACTCGTA
66 ATTTAGTAACTCGCA
* * * ** *
49011506 CAAATGCCTTCGGG-CCTGGCCCGGGATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCA
1 CAAATGCCTTCGGGACTTAGCCCGGGATTAGTAACTCGCATAAATGCCTTCGGGA-CTTAACCCG
* * **
49011569 GATATAGTCACTTAACA
65 GATTTAGTAAC-TCGCA
49011586 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
49011610 ACATCATTCG
Statistics
Matches: 156, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
78 3 0.02
79 122 0.78
80 31 0.20
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGGATTAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCA
Found at i:49011471 original size:39 final size:39
Alignment explanation
Indices: 49011347--49011610 Score: 266
Period size: 40 Copynumber: 6.7 Consensus size: 39
49011337 GCTACTCGTT
* *
49011347 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* * *
49011387 TAAATTCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
49011427 CAAATGCCTTCGGG-CTTAGCCCGGGATTAGTAACGCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATTAGTAACTCGCA
* * * * *
49011466 TAAATGCCTTTGGGACTTAACCTGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
* *
49011506 CAAATGCCTTCGGG-CCTGGCCCGGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATTAGTAACTCGCA
* * * **
49011545 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
49011586 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49011611 CATCATTCGA
Statistics
Matches: 183, Mismatches: 31, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
38 2 0.01
39 64 0.35
40 106 0.58
41 11 0.06
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:49014879 original size:17 final size:19
Alignment explanation
Indices: 49014847--49014881 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
49014837 GTCCATTAGG
49014847 TTAATTTAGATTTAATAAT
1 TTAATTTAGATTTAATAAT
49014866 TTAA-TTAG-TTTAATAA
1 TTAATTTAGATTTAATAA
49014882 ATCTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (19 bp):
TTAATTTAGATTTAATAAT
Found at i:49019329 original size:35 final size:35
Alignment explanation
Indices: 49019290--49019359 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
49019280 AAGCCGTTCA
49019290 CCCTCTTCCTCTCCTCTTTTCTCTTAAATTTTCTT
1 CCCTCTTCCTCTCCTCTTTTCTCTTAAATTTTCTT
*
49019325 CCCTCTTTCTCTCCTCTTTTCTCTTAAATTTTCTT
1 CCCTCTTCCTCTCCTCTTTTCTCTTAAATTTTCTT
49019360 TCTTTCTCCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.09, C:0.36, G:0.00, T:0.56
Consensus pattern (35 bp):
CCCTCTTCCTCTCCTCTTTTCTCTTAAATTTTCTT
Found at i:49021074 original size:37 final size:37
Alignment explanation
Indices: 49021030--49021104 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
49021020 AGACTTTTCA
49021030 TCATGTCATATCCACATGCTTATCCAAATACTTATCT
1 TCATGTCATATCCACATGCTTATCCAAATACTTATCT
*
49021067 TCATGTCATATGCACATGCTTATCCAAATACTTATCT
1 TCATGTCATATCCACATGCTTATCCAAATACTTATCT
49021104 T
1 T
49021105 TCATAGTATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (37 bp):
TCATGTCATATCCACATGCTTATCCAAATACTTATCT
Found at i:49027114 original size:37 final size:37
Alignment explanation
Indices: 49027061--49027182 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
49027051 TATAAAAGAA
*
49027061 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
49027098 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
49027135 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
49027172 GTCTCACCCGG
1 GTCTTACCCGG
49027183 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:49027339 original size:49 final size:49
Alignment explanation
Indices: 49027284--49027400 Score: 216
Period size: 49 Copynumber: 2.4 Consensus size: 49
49027274 TTTTGCATTA
49027284 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
49027333 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
49027382 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
49027401 CATATATGTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 66 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:49030964 original size:29 final size:29
Alignment explanation
Indices: 49030928--49031153 Score: 409
Period size: 29 Copynumber: 7.8 Consensus size: 29
49030918 TATTGAAAAA
* *
49030928 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
49030957 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
49030986 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
49031015 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
49031044 CTCGCACACATAGTGCCCCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
49031073 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
49031102 CTCGCACACATAGTGCC-CGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
49031130 CTCGTACACATAGTGCCTCGATTA
1 CTCGCACACATAGTGCCTCGATTA
49031154 ACGAAATTTG
Statistics
Matches: 191, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
28 27 0.14
29 164 0.86
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:49033285 original size:37 final size:37
Alignment explanation
Indices: 49033232--49033353 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
49033222 TATAAAAGAA
*
49033232 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
49033269 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
49033306 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
49033343 GTCTCACCCGG
1 GTCTTACCCGG
49033354 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:49033510 original size:49 final size:49
Alignment explanation
Indices: 49033455--49033571 Score: 216
Period size: 49 Copynumber: 2.4 Consensus size: 49
49033445 TTTTGCATTA
49033455 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
49033504 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
49033553 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
49033572 CATATATGTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 66 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:49042228 original size:16 final size:16
Alignment explanation
Indices: 49042207--49042238 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
49042197 TTCTTTACCT
49042207 GATTCGGGCTGTACTA
1 GATTCGGGCTGTACTA
49042223 GATTCGGGCTGTACTA
1 GATTCGGGCTGTACTA
49042239 ACACTGGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (16 bp):
GATTCGGGCTGTACTA
Found at i:49046461 original size:93 final size:93
Alignment explanation
Indices: 49046353--49046523 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
49046343 GCCGCTAAGT
* * *
49046353 GAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGA-ACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
49046417 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
49046446 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
49046511 CGAGTTCGGATGC
66 CGAGTTCGGATGC
49046524 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:49046518 original size:46 final size:46
Alignment explanation
Indices: 49046347--49046518 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
49046337 TAACCCGCCG
* * *
49046347 CTAAGTGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCATC
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCATC
* *
49046392 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-
1 C-TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GAC-A-TTCGCATC
* * *
49046441 CTCA-CGAACTCAGACTCAACTCAACGAGTTCGA-ACATTCGCATC
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCATC
49046485 CGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 C-TAAGTGAACTCGGACTCAACTCAACGAGTTCG
49046519 GATGCTCAAC
Statistics
Matches: 105, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 58 0.55
47 25 0.24
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCATC
Found at i:49047320 original size:41 final size:41
Alignment explanation
Indices: 49047274--49047356 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
49047264 AAATATTACT
49047274 ATCATAAGCTATATCGAGTTACCAGGATTTCAAAAACGTAA
1 ATCATAAGCTATATCGAGTTACCAGGATTTCAAAAACGTAA
49047315 ATCATAAGCTATATCGAGTTACCAGGATTTCAAAAACGTAA
1 ATCATAAGCTATATCGAGTTACCAGGATTTCAAAAACGTAA
49047356 A
1 A
49047357 AATCATTAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (41 bp):
ATCATAAGCTATATCGAGTTACCAGGATTTCAAAAACGTAA
Found at i:49056485 original size:21 final size:20
Alignment explanation
Indices: 49056461--49056503 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
49056451 TAGGAGAGCG
*
49056461 AAAGGAACAAGAAATGGGCCA
1 AAAGCAACAA-AAATGGGCCA
**
49056482 AAAGCAGTAAAAATGGGCCA
1 AAAGCAACAAAAATGGGCCA
49056502 AA
1 AA
49056504 GTACGAAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.53, C:0.14, G:0.26, T:0.07
Consensus pattern (20 bp):
AAAGCAACAAAAATGGGCCA
Found at i:49065042 original size:40 final size:40
Alignment explanation
Indices: 49064949--49065172 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
49064939 AACACAAATA
* * * *
49064949 CCTTCGGGACTTAGCCTGGATATAAC-ACCAGTACGAGTG
1 CCTTCGGGACTTAACCCGGATATAACAACCAGCACGAATG
* * * * *
49064988 CGTTCGGAACTTAGCCCGGATAAAACAACCAACACGAATG
1 CCTTCGGGACTTAACCCGGATATAACAACCAGCACGAATG
* *
49065028 CCTTCAGGACTTAGCCCGGATATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGATATAACAACCAGCACGAATG
* *
49065068 CCTTCGGGACTTAACTCGGATATAAGAACCAGCA-GAAATG
1 CCTTCGGGACTTAACCCGGATATAACAACCAGCACG-AATG
* *
49065108 CCTTCGGGACTTAACCTGGATATAACAACCAGCACGAAAG
1 CCTTCGGGACTTAACCCGGATATAACAACCAGCACGAATG
49065148 CCTTCGGGACTTAACCCGGATATAA
1 CCTTCGGGACTTAACCCGGATATAA
49065173 TCCTCAATTA
Statistics
Matches: 161, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 23 0.14
40 137 0.85
41 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAACAACCAGCACGAATG
Found at i:49072988 original size:40 final size:39
Alignment explanation
Indices: 49072893--49073110 Score: 240
Period size: 40 Copynumber: 5.5 Consensus size: 39
49072883 AATACCTTTG
* * * *
49072893 GGACTTAGCCCGGATATAAC-ACCAGTACGAGTGCCTTC
1 GGACTTAACCCAGATATAACAACCAGCACGAATGCCTTC
** * *
49072931 GGAACTTGGCCCGGATATAACAACCAGCACGAATGGCTTC
1 GG-ACTTAACCCAGATATAACAACCAGCACGAATGCCTTC
* *
49072971 AGGACTTAGCCCAGATATAACAACCAGCACGAAAGCCTTC
1 -GGACTTAACCCAGATATAACAACCAGCACGAATGCCTTC
* * * *
49073011 GGGACTTAACTCGGATATAACAACTAGCATGAATGCCTTC
1 -GGACTTAACCCAGATATAACAACCAGCACGAATGCCTTC
* *
49073051 GGGACTTAACCCAGAGATAACAACCAGCACGAAAGCCTTC
1 -GGACTTAACCCAGATATAACAACCAGCACGAATGCCTTC
49073091 GAGACTTAACCCAGATATAA
1 G-GACTTAACCCAGATATAA
49073111 TCCTCAATTA
Statistics
Matches: 154, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
38 2 0.01
39 18 0.12
40 132 0.86
41 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (39 bp):
GGACTTAACCCAGATATAACAACCAGCACGAATGCCTTC
Found at i:49073028 original size:80 final size:80
Alignment explanation
Indices: 49072893--49073110 Score: 285
Period size: 80 Copynumber: 2.7 Consensus size: 80
49072883 AATACCTTTG
* * ** * **
49072893 GGACTTAGCCCGGATATAAC-ACCAGTACGAGTGCCTTCGGAACTTGGCCCGGATATAACAACCA
1 GGACTTAGCCCAGATATAACAACCAGCACGAAAGCCTTCGGGACTTAACCCGGATATAACAACCA
*
49072957 GCACGAATGGCTTCA
66 GCACGAATGCCTTCA
* *
49072972 GGACTTAGCCCAGATATAACAACCAGCACGAAAGCCTTCGGGACTTAACTCGGATATAACAACTA
1 GGACTTAGCCCAGATATAACAACCAGCACGAAAGCCTTCGGGACTTAACCCGGATATAACAACCA
* *
49073037 GCATGAATGCCTTCG
66 GCACGAATGCCTTCA
* * * *
49073052 GGACTTAACCCAGAGATAACAACCAGCACGAAAGCCTTCGAGACTTAACCCAGATATAA
1 GGACTTAGCCCAGATATAACAACCAGCACGAAAGCCTTCGGGACTTAACCCGGATATAA
49073111 TCCTCAATTA
Statistics
Matches: 121, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 19 0.16
80 102 0.84
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (80 bp):
GGACTTAGCCCAGATATAACAACCAGCACGAAAGCCTTCGGGACTTAACCCGGATATAACAACCA
GCACGAATGCCTTCA
Found at i:49073104 original size:120 final size:119
Alignment explanation
Indices: 49072887--49073110 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 119
49072877 AACACAAATA
* * * * ** * *
49072887 CCTTTGGGACTTAGCCCGGATATAACACCAGTACGAGTGCCTTCGGAACTTGGCCCGGATATAAC
1 CCTTCGGGACTTAACCCGGATATAACACCAGCACGAATGCCTTCGGAACTTAACCCAGAGATAAC
* * *
49072952 AACCAGCACGAATGGCTTCAGGACTTAGCCCAGATATAACAACCAGCACGAAAG
66 AACCAGCACGAAAGCCTTCAGGACTTAACCCAGATATAACAACCAGCACGAAAG
* * * *
49073006 CCTTCGGGACTTAACTCGGATATAACAACTAGCATGAATGCCTTCGGGACTTAACCCAGAGATAA
1 CCTTCGGGACTTAACCCGGATATAAC-ACCAGCACGAATGCCTTCGGAACTTAACCCAGAGATAA
49073071 CAACCAGCACGAAAGCCTTC-GAGACTTAACCCAGATATAA
65 CAACCAGCACGAAAGCCTTCAG-GACTTAACCCAGATATAA
49073111 TCCTCAATTA
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
119 24 0.27
120 64 0.73
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (119 bp):
CCTTCGGGACTTAACCCGGATATAACACCAGCACGAATGCCTTCGGAACTTAACCCAGAGATAAC
AACCAGCACGAAAGCCTTCAGGACTTAACCCAGATATAACAACCAGCACGAAAG
Found at i:49081729 original size:17 final size:17
Alignment explanation
Indices: 49081707--49081744 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
49081697 TTTTATTAAG
49081707 TTTTTAAGACTCATTCA
1 TTTTTAAGACTCATTCA
* *
49081724 TTTTTAAGATTCATTTA
1 TTTTTAAGACTCATTCA
49081741 TTTT
1 TTTT
49081745 CCTTTTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (17 bp):
TTTTTAAGACTCATTCA
Found at i:49084715 original size:18 final size:17
Alignment explanation
Indices: 49084680--49084712 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
49084670 CTTTTTATTC
49084680 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
49084697 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
49084713 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:49087607 original size:27 final size:27
Alignment explanation
Indices: 49087574--49087648 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
49087564 GGGGGAAGTG
* * *
49087574 TACTGTTACTGTTGGCTTTGCCATATA
1 TACTGTTACTGGTAGCTTTGCCACATA
49087601 TACTGTTACTGGTAGCTTTGCCACATA
1 TACTGTTACTGGTAGCTTTGCCACATA
* *
49087628 TACTGATACTGGCAGCTTTGC
1 TACTGTTACTGGTAGCTTTGC
49087649 TGTGTTACTG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (27 bp):
TACTGTTACTGGTAGCTTTGCCACATA
Found at i:49087678 original size:26 final size:26
Alignment explanation
Indices: 49087628--49087678 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
49087618 TTGCCACATA
*
49087628 TACTGATACTGGCAGCTTTGCTGTGT
1 TACTGATACTGGCAGCTTTACTGTGT
* * *
49087654 TACTGTTACTGGCAGTTTTATTGTG
1 TACTGATACTGGCAGCTTTACTGTG
49087679 ATATTACTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.16, C:0.16, G:0.25, T:0.43
Consensus pattern (26 bp):
TACTGATACTGGCAGCTTTACTGTGT
Found at i:49092387 original size:48 final size:48
Alignment explanation
Indices: 49092285--49092448 Score: 140
Period size: 48 Copynumber: 3.5 Consensus size: 48
49092275 TGAGATCCGA
* * * * * * **
49092285 TGTAAGACCATGTTTGGGACATGGCATTGGCATCGAGATGGGATCTCG
1 TGTAAGACCATGTCTGGGACATGGTATCGACATCGACATGTGATGACG
* * * *
49092333 TATAAGACCATGTCTGGGACATGGTATCGGCCTCGACGTGTGA-GACAG
1 TGTAAGACCATGTCTGGGACATGGTATCGACATCGACATGTGATGAC-G
* **
49092381 TGTAAGACCA----TGGGACATGGTATCGACATCGATATGTGATTTCG
1 TGTAAGACCATGTCTGGGACATGGTATCGACATCGACATGTGATGACG
*
49092425 TGTAAGACCATGTCTGCGACATGG
1 TGTAAGACCATGTCTGGGACATGG
49092449 CATCATTATG
Statistics
Matches: 92, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
44 36 0.39
45 1 0.01
47 1 0.01
48 54 0.59
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGTATCGACATCGACATGTGATGACG
Found at i:49092419 original size:44 final size:44
Alignment explanation
Indices: 49092347--49092436 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
49092337 AGACCATGTC
* * *
49092347 TGGGACATGGTATCGGCCTCGACGTGTGA-GACAGTGTAAGACCA
1 TGGGACATGGTATCGACATCGACATGTGATGAC-GTGTAAGACCA
* **
49092391 TGGGACATGGTATCGACATCGATATGTGATTTCGTGTAAGACCA
1 TGGGACATGGTATCGACATCGACATGTGATGACGTGTAAGACCA
49092435 TG
1 TG
49092437 TCTGCGACAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 38 0.97
45 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (44 bp):
TGGGACATGGTATCGACATCGACATGTGATGACGTGTAAGACCA
Found at i:49096630 original size:29 final size:30
Alignment explanation
Indices: 49096598--49096657 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
49096588 TGTGCATTAT
*
49096598 ATATATATGCTGAA-TTAAGT-TGTAAAATA
1 ATATAAATG-TGAAGTTAAGTATGTAAAATA
49096627 ATATAAATGTGAAGTTTAAGTATGTAAAATA
1 ATATAAATGTGAAG-TTAAGTATGTAAAATA
49096658 CGGCTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 4 0.15
29 8 0.30
30 6 0.22
31 9 0.33
ACGTcount: A:0.47, C:0.02, G:0.15, T:0.37
Consensus pattern (30 bp):
ATATAAATGTGAAGTTAAGTATGTAAAATA
Found at i:49099132 original size:30 final size:31
Alignment explanation
Indices: 49099086--49099146 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
49099076 ATCCCGAGCC
49099086 TAGGGGCAAAAATGTAAATATG-CAAAATTT
1 TAGGGGCAAAAATGTAAATATGCCAAAATTT
* * * *
49099116 TAGGGGTAAAATTGTAATTTTGCCAAAATTT
1 TAGGGGCAAAAATGTAAATATGCCAAAATTT
49099147 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.33
Consensus pattern (31 bp):
TAGGGGCAAAAATGTAAATATGCCAAAATTT
Found at i:49099615 original size:46 final size:46
Alignment explanation
Indices: 49099565--49099740 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
49099555 TGGTTGAGCA
*
49099565 TCCGAGCTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
49099611 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
49099656 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
49099704 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49099741 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:49099721 original size:93 final size:93
Alignment explanation
Indices: 49099562--49099732 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
49099552 GGATGGTTGA
* * *
49099562 GCATCCGAGCTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAGT
49099627 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
49099655 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAGT
*
49099720 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
49099733 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:49104463 original size:40 final size:40
Alignment explanation
Indices: 49104399--49104566 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
49104389 CCTTCGAGAT
** *
49104399 TTAA-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAACCCGGATATAATAACTAGCACAATTGCCTTCGGGTC
* * *
49104438 TTAACCCGGATTTAGTAACTTGCACAATTGCCTTCGGGTC
1 TTAACCCGGATATAATAACTAGCACAATTGCCTTCGGGTC
* *
49104478 TTAACCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTC
1 TTAACCCGGATATAATAACTAGCAC-AATTGCCTTCGGGTC
* * * * *
49104518 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTAGCACAATTGCCTTCGGGTC
*
49104558 TTAGCCCGG
1 TTAACCCGG
49104567 GTATCATTCA
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.05
40 102 0.93
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTAGCACAATTGCCTTCGGGTC
Found at i:49104526 original size:80 final size:80
Alignment explanation
Indices: 49104389--49104566 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
49104379 GAGTCACGTA
* * * * *
49104389 CCTTCGAGATTTAA-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTAG
1 CCTTCGGGACTTAACCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
49104453 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
49104468 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAACCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
49104532 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
*
49104548 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAACCCGG
49104567 GTATCATTCA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 11 0.13
80 69 0.84
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:49111135 original size:40 final size:40
Alignment explanation
Indices: 49111076--49111283 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
49111066 CAATTGAATG
* * * *
49111076 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
49111116 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
49111156 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
49111196 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
49111236 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
49111276 ATATCCGG
1 ATATCCGG
49111284 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:49111214 original size:80 final size:80
Alignment explanation
Indices: 49111078--49111283 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
49111068 ATTGAATGAT
* * ** * * *
49111078 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
49111142 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
49111158 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
49111223 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
49111238 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
49111284 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:49115830 original size:40 final size:40
Alignment explanation
Indices: 49115771--49115897 Score: 166
Period size: 40 Copynumber: 3.2 Consensus size: 40
49115761 GGGATTTAAT
* **
49115771 CGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAACC
* ** *
49115811 CGGATTTAGTAACTTGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAACC
*
49115851 CGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAACC
49115891 CGGATAT
1 CGGATAT
49115898 TATCACTAGC
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
40 73 0.97
41 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAACC
Found at i:49115915 original size:40 final size:40
Alignment explanation
Indices: 49115771--49115933 Score: 159
Period size: 40 Copynumber: 4.1 Consensus size: 40
49115761 GGGATTTAAT
* * * *
49115771 CGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATTATCACTAGCACAAATGCCTTCGGGTCTTAACC
* * *
49115811 CGGAT-TTAGTAACTTGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATTA-TCACTAGCACAAATGCCTTCGGGTCTTAACC
* * * *
49115851 CGGATA-TAACAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATTATC-ACTAGCACAAATGCCTTCGGGTCTTAACC
* * * *
49115891 CGGATATTATCACTAGCATAAATGCCTTCAGGACTTAGCC
1 CGGATATTATCACTAGCACAAATGCCTTCGGGTCTTAACC
49115931 CGG
1 CGG
49115934 GTATCATTCA
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 2 0.02
40 97 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CGGATATTATCACTAGCACAAATGCCTTCGGGTCTTAACC
Found at i:49115917 original size:80 final size:80
Alignment explanation
Indices: 49115771--49115933 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 80
49115761 GGGATTTAAT
* * *
49115771 CGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTGC
1 CGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTAGCACAAATGC
* *
49115836 CTTCGGGTCTTAACC
66 CTTCAGGACTTAACC
** * * *
49115851 CGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATTA-TCACTAGCATAAAT
1 CGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGAT-TTAGTAACTAGCACAAAT
*
49115914 GCCTTCAGGACTTAGCC
64 GCCTTCAGGACTTAACC
49115931 CGG
1 CGG
49115934 GTATCATTCA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 65 0.93
81 5 0.07
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (80 bp):
CGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTAGCACAAATGC
CTTCAGGACTTAACC
Found at i:49121790 original size:46 final size:46
Alignment explanation
Indices: 49121740--49121915 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
49121730 TGGTTGAGCA
49121740 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
49121786 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
49121831 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
49121879 CCCGAGCTCGTTC-AGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCG-TCGAGTTGAGTCCGAGTTCACTTATGG
49121916 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.55
47 30 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:49121896 original size:93 final size:93
Alignment explanation
Indices: 49121737--49121908 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
49121727 GGATGGTTGA
* * *
49121737 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
49121802 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
49121830 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTCAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
49121895 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
49121909 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:49124612 original size:49 final size:49
Alignment explanation
Indices: 49124540--49124733 Score: 203
Period size: 50 Copynumber: 3.9 Consensus size: 49
49124530 CCAAAAGCTA
*
49124540 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
* * *
49124589 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAACAG
** * * * * *
49124639 TCTAATACACGTAGTAGCTTGCACTTAGTACTACACACGTGATC-ACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
* * *
49124687 TTTTTGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC
1 --TCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
49124734 TCACAATAGA
Statistics
Matches: 119, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 39 0.33
50 41 0.34
51 36 0.30
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
Found at i:49124724 original size:101 final size:99
Alignment explanation
Indices: 49124551--49124737 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
49124541 CTGGTACGCA
* * *
49124551 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTGGTACACATAGTAGCCTACACTTA
*
49124616 GTACTACACATGTGACCTCACCATCTAATACACG
66 GTACTACACATGCGACCTCACCATCTAATACACG
* * * * *
49124650 TAGTAGCTTGCACTTAGTACTACACACGTGATC-ACAGTTTTTGGGTACGCATAGTAGCCTACAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG--TCT-GGTACACATAGTAGCCTACAC
49124714 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACATGCGACCTCAC
49124738 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 4 0.05
99 29 0.38
100 2 0.03
101 41 0.54
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTGGTACACATAGTAGCCTACACTTA
GTACTACACATGCGACCTCACCATCTAATACACG
Found at i:49126915 original size:15 final size:15
Alignment explanation
Indices: 49126859--49126923 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
49126849 TAAAGATAAC
*
49126859 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
49126873 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
49126888 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
49126903 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
49126918 AAGAAA
1 AAGAAA
49126924 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:49126925 original size:30 final size:31
Alignment explanation
Indices: 49126859--49126927 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
49126849 TAAAGATAAC
*
49126859 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
49126889 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
49126918 AAGAAACCCA
1 AAGAAACCCA
49126928 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:49129291 original size:39 final size:39
Alignment explanation
Indices: 49129247--49129513 Score: 392
Period size: 39 Copynumber: 6.8 Consensus size: 39
49129237 TTTGTGCTTA
*
49129247 TATCCGGGCTAAAGTTCCACAGGCTTCGTGCTGGAAATG
1 TATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGGAAATG
*
49129286 TATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGGAAATA
1 TATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGGAAATG
* * *
49129325 TATCCTGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATG
1 TATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGGAAATG
* *
49129364 TATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATG
1 TATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGGAAATG
* *
49129403 TATCCGGGCCAAAGT-CCAGCAGGCTTCGTGCTAGAAATG
1 TATCCGGGCTAAAGTCCCA-CAGGCTTCGTGCTGGAAATG
* * *
49129442 TATCTGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATG
1 TATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGGAAATG
* *
49129481 TATCCGGGTTAAAGTCCCACAGGCTTTGTGCTG
1 TATCCGGGCTAAAGTCCCACAGGCTTCGTGCTG
49129514 ATAATATAAT
Statistics
Matches: 205, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 2 0.01
39 201 0.98
40 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGGAAATG
Found at i:49133620 original size:15 final size:15
Alignment explanation
Indices: 49133564--49133628 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
49133554 TAAAGATAAC
*
49133564 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
49133578 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
49133593 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
49133608 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
49133623 AAGAAA
1 AAGAAA
49133629 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:49133630 original size:30 final size:31
Alignment explanation
Indices: 49133564--49133632 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
49133554 TAAAGATAAC
*
49133564 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
49133594 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
49133623 AAGAAACCCA
1 AAGAAACCCA
49133633 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:49139262 original size:34 final size:33
Alignment explanation
Indices: 49139201--49139267 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 33
49139191 TCGACATTGA
*
49139201 AATGGGCTAAGGCCCACACTGATACTGATACTGT
1 AATGGGCTAAGGCCCACACTGAAACTGA-ACTGT
49139235 AATGGGCTAAGGCCCTA-AC-GAAAACTGAACTGT
1 AATGGGCTAAGGCCC-ACACTG-AAACTGAACTGT
49139268 TACTGATACG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 6 0.20
34 23 0.77
35 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (33 bp):
AATGGGCTAAGGCCCACACTGAAACTGAACTGT
Found at i:49140999 original size:35 final size:35
Alignment explanation
Indices: 49140953--49141023 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
49140943 GGTTGTGAAA
* *
49140953 TGTCAAATAAGGATTTATTTGTGAAATATGTAAAT
1 TGTCAAATAAGGAATTATTTGTAAAATATGTAAAT
*
49140988 TGTCAAATAAGGAATTATTTGTAAAATGTGTAAAT
1 TGTCAAATAAGGAATTATTTGTAAAATATGTAAAT
49141023 T
1 T
49141024 TTTTTGTGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.39
Consensus pattern (35 bp):
TGTCAAATAAGGAATTATTTGTAAAATATGTAAAT
Found at i:49141014 original size:19 final size:19
Alignment explanation
Indices: 49140957--49141014 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
49140947 GTGAAATGTC
* *
49140957 AAATAAGGATTTATTTGTG
1 AAATAAGGAATTATTTGTA
* * *
49140976 AAATATGTAA--A-TTGTC
1 AAATAAGGAATTATTTGTA
49140992 AAATAAGGAATTATTTGTA
1 AAATAAGGAATTATTTGTA
49141011 AAAT
1 AAAT
49141015 GTGTAAATTT
Statistics
Matches: 29, Mismatches: 7, Indels: 6
0.69 0.17 0.14
Matches are distributed among these distances:
16 12 0.41
17 1 0.03
18 1 0.03
19 15 0.52
ACGTcount: A:0.45, C:0.02, G:0.16, T:0.38
Consensus pattern (19 bp):
AAATAAGGAATTATTTGTA
Found at i:49143318 original size:27 final size:26
Alignment explanation
Indices: 49143270--49143329 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
49143260 GTGAGGCTGC
*
49143270 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
49143297 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
49143323 CAGATAT
1 CAGATAT
49143330 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:49144101 original size:27 final size:27
Alignment explanation
Indices: 49144071--49144269 Score: 274
Period size: 27 Copynumber: 7.4 Consensus size: 27
49144061 GAGGCAAAAT
* * *
49144071 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49144098 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49144125 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49144152 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49144179 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49144206 GGTAATTCTACCTTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49144232 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49144259 AGTAATTCTAC
1 GGTAATTCTAC
49144270 AACTTATCCA
Statistics
Matches: 151, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 25 0.17
27 126 0.83
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:49144143 original size:54 final size:54
Alignment explanation
Indices: 49144075--49144269 Score: 304
Period size: 54 Copynumber: 3.6 Consensus size: 54
49144065 CAAAATGGTA
* * * *
49144075 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGT
49144128 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGT
49144182 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACA-GGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGT
* * **
49144235 AATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTAC
49144270 AACTTATCCA
Statistics
Matches: 133, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
53 47 0.35
54 86 0.65
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGT
Found at i:49145310 original size:54 final size:54
Alignment explanation
Indices: 49145213--49145322 Score: 175
Period size: 54 Copynumber: 2.0 Consensus size: 54
49145203 GCCATGATTA
* *
49145213 CGCCACAGTACCTTTACTAGCGAAACTAATTTTCGCCTCAAAATCTTAACATCT
1 CGCCACAGCACCTTTACTAGCGAAACTAATTTCCGCCTCAAAATCTTAACATCT
* * *
49145267 CGCCACAGCACCTTTACTAGCGAAACTGATTTCCTCCTTAAAATCTTAACATCT
1 CGCCACAGCACCTTTACTAGCGAAACTAATTTCCGCCTCAAAATCTTAACATCT
49145321 CG
1 CG
49145323 ATCCAAAATC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.30, C:0.31, G:0.10, T:0.29
Consensus pattern (54 bp):
CGCCACAGCACCTTTACTAGCGAAACTAATTTCCGCCTCAAAATCTTAACATCT
Found at i:49150060 original size:2 final size:2
Alignment explanation
Indices: 49150053--49150078 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
49150043 ACCAAAACAG
49150053 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
49150079 GTGACGAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49150817 original size:27 final size:27
Alignment explanation
Indices: 49150787--49150931 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
49150777 GGGGCAAAAT
* *
49150787 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49150814 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49150841 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49150868 GGTAATTCTACCTTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
49150894 GGTAATTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49150921 AGTAATTCTAC
1 GGTAATTCTAC
49150932 AACTTATCCA
Statistics
Matches: 102, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
26 24 0.24
27 78 0.76
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:49150858 original size:54 final size:53
Alignment explanation
Indices: 49150786--49150931 Score: 195
Period size: 53 Copynumber: 2.7 Consensus size: 53
49150776 AGGGGCAAAA
*
49150786 TGGTAATTT-TACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACA-GGGTATTT
*
49150840 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTT
* * * * **
49150893 CGGTAATTCTATCCTACAGGGGTATTTTAGTAATTCTAC
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTAC
49150932 AACTTATCCA
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 45 0.54
54 38 0.46
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (53 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTT
Found at i:49154680 original size:18 final size:19
Alignment explanation
Indices: 49154643--49154680 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
49154633 AGTTAGTAAT
*
49154643 AAAGAAATGGGGAAAAAAA
1 AAAGAAATGGAGAAAAAAA
49154662 AAAGAAA-GGAGAAAGAAAA
1 AAAGAAATGGAGAAA-AAAA
49154681 TGATGAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (19 bp):
AAAGAAATGGAGAAAAAAA
Found at i:49154680 original size:19 final size:19
Alignment explanation
Indices: 49154643--49154680 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
49154633 AGTTAGTAAT
*
49154643 AAAGAAATGGGGAAAAAAA
1 AAAGAAATGGAGAAAAAAA
*
49154662 AAAGAAA-GGAGAAAGAAA
1 AAAGAAATGGAGAAAAAAA
49154680 A
1 A
49154681 TGATGAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (19 bp):
AAAGAAATGGAGAAAAAAA
Found at i:49156300 original size:40 final size:40
Alignment explanation
Indices: 49156004--49156293 Score: 424
Period size: 40 Copynumber: 7.2 Consensus size: 40
49155994 CTAAGATCCA
*
49156004 AAGGCATTTGTGTGAGTTACCAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCG
* **
49156044 AAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT-CCG
1 AAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAG-TCCCG
*
49156084 AAGGCATTTGTGCGAGTTACCAAATCCGAGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCG
** *
49156124 AAGGCATTTGTGCGAGTTACCAAATCCGGACTAAGAT-CCA
1 AAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAG-TCCCG
*
49156164 AAGGCATTTGTGCCAGTTACCAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCG
49156204 AAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCG
* * *
49156244 AAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCG
1 AAGGCATTTGTGCGAGTTACCA-AATCCGGGTTAAGTCCCG
49156284 AAGGCATTTG
1 AAGGCATTTG
49156294 AACGAGTAGC
Statistics
Matches: 225, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.01
40 219 0.97
41 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCG
Found at i:49156312 original size:80 final size:80
Alignment explanation
Indices: 49155987--49156293 Score: 483
Period size: 80 Copynumber: 3.8 Consensus size: 80
49155977 AAGTGACTAT
* *
49155987 ATCCGGACTAAGATCCAAAGGCATTTGTGTGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
*
49156052 TGTGCGAGTTACTAA
66 TGTGCGAGTTACCAA
*
49156067 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACCAAATCCGAGTTAAGTCCCGAAGGCATT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
49156132 TGTGCGAGTTACCAA
66 TGTGCGAGTTACCAA
* *
49156147 ATCCGGACTAAGATCCAAAGGCATTTGTGCCAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
49156212 TGTGCGAGTTACCAA
66 TGTGCGAGTTACCAA
** * * *
49156227 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCA
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACCA-AATCCGGGTTAAGTCCCGAAGGCA
49156290 TTTG
64 TTTG
49156294 AACGAGTAGC
Statistics
Matches: 211, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
79 1 0.00
80 208 0.99
81 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (80 bp):
ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
TGTGCGAGTTACCAA
Found at i:49159992 original size:29 final size:28
Alignment explanation
Indices: 49159923--49160056 Score: 135
Period size: 29 Copynumber: 4.7 Consensus size: 28
49159913 ATAATATGAT
* *
49159923 TTGGGCTGGATGGGCCATATAAATGAGA
1 TTGGGCCGGATGGGCCATATAAATGTGA
** *
49159951 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCGGATGGGCCATATAAATGTG-A
* *
49159980 TTGGGCCGGATGGGCCATATGACTGTGGA
1 TTGGGCCGGATGGGCCATATAAATGT-GA
* *
49160009 TTAGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCCGGATGGGCCATATAAATGTGA
* *
49160037 TTTGGCC-TAGTGGGCCATAT
1 TTGGGCCGGA-TGGGCCATAT
49160057 GCATGTATAT
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
27 1 0.01
28 40 0.45
29 47 0.53
30 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (28 bp):
TTGGGCCGGATGGGCCATATAAATGTGA
Found at i:49160345 original size:25 final size:26
Alignment explanation
Indices: 49160317--49160368 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
49160307 AATCGTAATA
* *
49160317 AAGGG-AAAATAACCGAAATGCCCCT
1 AAGGGAAAAATAACCAAAATACCCCT
*
49160342 AAGGGAAAAATGACCAAAATACCCCT
1 AAGGGAAAAATAACCAAAATACCCCT
49160368 A
1 A
49160369 TGTGTTGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.48, C:0.23, G:0.17, T:0.12
Consensus pattern (26 bp):
AAGGGAAAAATAACCAAAATACCCCT
Found at i:49163535 original size:81 final size:82
Alignment explanation
Indices: 49163440--49163632 Score: 237
Period size: 81 Copynumber: 2.4 Consensus size: 82
49163430 AGTACTCAAT
* * * *
49163440 ATCTCGCACACTAAGTGTCGTACATAGCTGAAGCTATCTCAA-ATTGCACACTAAATTCCATATA
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAATATTGCACACTAAATGCCATATA
*
49163504 TAGCCGAAGCTATCTCA
66 CAGCCGAAGCTATCTCA
* * * *
49163521 ATCTCGCACCCTAAGTGCCATATATAGCCGAAGCTATCTCAATCTTGCACACTAAGTGCCATATA
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAATATTGCACACTAAATGCCATATA
* *
49163586 CAGCTGAAGCTATGTCA
66 CAGCCGAAGCTATCTCA
* * **
49163603 A-ATCGCACACTAAATGCCATATGTAGCCGA
1 ATCTCGCACACTAAGTGCCATACATAGCCGA
49163633 TGTGACAACC
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
81 62 0.65
82 34 0.35
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (82 bp):
ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAATATTGCACACTAAATGCCATATA
CAGCCGAAGCTATCTCA
Found at i:49163550 original size:41 final size:41
Alignment explanation
Indices: 49163440--49163632 Score: 230
Period size: 41 Copynumber: 4.8 Consensus size: 41
49163430 AGTACTCAAT
* * * *
49163440 ATCTCGCACACTAAGTGTCGTACATAGCTGAAGCTATCTCAA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTC-A
* *
49163482 AT-T-GCACACTAAATTCCATATATAGCCGAAGCTATCTCA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
*
49163521 ATCTCGCACCCTAAGTGCCATATATAGCCGAAGCTATCTCA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
* * * *
49163562 ATCTTGCACACTAAGTGCCATATACAGCTGAAGCTATGTCA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
* * *
49163603 A-ATCGCACACTAAATGCCATATGTAGCCGA
1 ATCTCGCACACTAAGTGCCATATATAGCCGA
49163633 TGTGACAACC
Statistics
Matches: 129, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 53 0.41
41 71 0.55
42 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
Found at i:49171863 original size:29 final size:29
Alignment explanation
Indices: 49171828--49171900 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
49171818 TTGTGAGATT
* *
49171828 GGCACTAAGTGTGCGGGCTTGAAA-TGCAG
1 GGCACTAAGTGTGCGAG-TTGAAAGTACAG
* *
49171857 GGCACTAAGTGTGCGAGTTTAAAGTACAT
1 GGCACTAAGTGTGCGAGTTGAAAGTACAG
49171886 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
49171901 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGTTGAAAGTACAG
Found at i:49175856 original size:40 final size:40
Alignment explanation
Indices: 49175811--49175977 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
49175801 CGGAATATAA
*
49175811 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
49175851 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49175891 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
49175931 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
49175970 CCGGATAT
1 CCGGATAT
49175978 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49183825 original size:40 final size:40
Alignment explanation
Indices: 49183780--49183946 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
49183770 CGGAATATAA
*
49183780 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
49183820 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49183860 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
49183900 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
49183939 CCGGATAT
1 CCGGATAT
49183947 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49185890 original size:43 final size:38
Alignment explanation
Indices: 49185812--49185887 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
49185802 AGTTAATATA
49185812 ATATAAACATATCATAAAATAAGCCATGTTCATTTTAT
1 ATATAAACATATCATAAAATAAGCCATGTTCATTTTAT
*
49185850 ATATAAACATATCATAAAATAAGCCATGTTCAGTTTAT
1 ATATAAACATATCATAAAATAAGCCATGTTCATTTTAT
49185888 TTTCTCTTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.36
Consensus pattern (38 bp):
ATATAAACATATCATAAAATAAGCCATGTTCATTTTAT
Found at i:49188418 original size:29 final size:29
Alignment explanation
Indices: 49188386--49188458 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
49188376 CTTCGAGCTC
* *
49188386 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
49188415 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
49188444 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
49188459 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:49189670 original size:24 final size:24
Alignment explanation
Indices: 49189629--49189684 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
49189619 TTTTTTTCCT
49189629 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
49189654 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
49189677 TATTCTTT
1 T-TTCTTT
49189685 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:49196315 original size:29 final size:29
Alignment explanation
Indices: 49196283--49196355 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
49196273 CTTCGAGCTC
* *
49196283 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
49196312 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
49196341 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
49196356 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:49197567 original size:24 final size:24
Alignment explanation
Indices: 49197526--49197581 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
49197516 TTTTTTTCCT
49197526 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
49197551 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
49197574 TATTCTTT
1 T-TTCTTT
49197582 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:49207749 original size:40 final size:39
Alignment explanation
Indices: 49207705--49207885 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
49207695 GTTCAAAACA
* * ** * *
49207705 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
49207745 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
49207785 CCTTCGGGCTTAGCCCGG-TATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
49207823 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
49207862 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
49207886 CTCGAACATT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 36 0.28
39 53 0.41
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:49207855 original size:77 final size:79
Alignment explanation
Indices: 49207735--49207885 Score: 252
Period size: 77 Copynumber: 1.9 Consensus size: 79
49207725 TATGGTAACC
49207735 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
49207800 CGG-TATCATAGCT
66 CGGATATCATAGCT
* * * *
49207813 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
49207877 CGGATATCA
66 CGGATATCA
49207886 CTCGAACATT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 46 0.68
78 22 0.32
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:49207857 original size:39 final size:39
Alignment explanation
Indices: 49207735--49207885 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
49207725 TATGGTAACC
* * * *
49207735 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
49207775 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
49207813 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
49207852 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
49207886 CTCGAACATT
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
38 36 0.34
39 53 0.50
40 17 0.16
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:49215825 original size:40 final size:39
Alignment explanation
Indices: 49215781--49215963 Score: 258
Period size: 40 Copynumber: 4.6 Consensus size: 39
49215771 GTTCAAAACA
* * ** * *
49215781 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
49215821 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
49215861 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
49215900 CCTTCGGGCTTAGCCCGGATATCATAAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAA-CTCGCACAATTG
49215940 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
49215964 CTCGAACATT
Statistics
Matches: 130, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 54 0.42
40 76 0.58
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:49215896 original size:79 final size:79
Alignment explanation
Indices: 49215811--49215963 Score: 263
Period size: 79 Copynumber: 1.9 Consensus size: 79
49215801 TATGGTAACC
49215811 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAA-CTCGCACAATTGCCTTCGGGCTTAGC
1 CGCACAAATGCCTTCGGG-CTTAACCCGGATATCACAAGCTCGCACAATTGCCTTCGGGCTTAGC
49215875 CCGGATATCATAGCT
65 CCGGATATCATAGCT
* * *
49215890 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAAGCTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGCTTAACCCGGATATCACAAGCTCGCACAATTGCCTTCGGGCTTAGCC
49215955 CGGATATCA
66 CGGATATCA
49215964 CTCGAACATT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
78 17 0.24
79 53 0.76
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGCTTAACCCGGATATCACAAGCTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:49221888 original size:30 final size:30
Alignment explanation
Indices: 49221854--49221911 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
49221844 GTTTGGAAGA
49221854 ACTCCCAAGTTACTTGCTCTCTAGACACAC
1 ACTCCCAAGTTACTTGCTCTCTAGACACAC
49221884 ACTCCCAAGTTACTTGCTCTCTAGACAC
1 ACTCCCAAGTTACTTGCTCTCTAGACAC
49221912 CACAGAAGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.26, C:0.36, G:0.10, T:0.28
Consensus pattern (30 bp):
ACTCCCAAGTTACTTGCTCTCTAGACACAC
Found at i:49224019 original size:38 final size:39
Alignment explanation
Indices: 49223938--49224050 Score: 183
Period size: 38 Copynumber: 2.9 Consensus size: 39
49223928 TATGGTAACC
* *
49223938 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAGCT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAGCT
*
49223978 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAGCT
49224016 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
49224051 TCGAACATTC
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
38 37 0.54
39 14 0.21
40 17 0.25
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAGCT
Found at i:49226244 original size:20 final size:20
Alignment explanation
Indices: 49226203--49226243 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
49226193 ATTTCGTACG
49226203 TTGGCCCATTTTCTCCTTTT
1 TTGGCCCATTTTCTCCTTTT
*
49226223 TTGGCCCA-TTTCTCGTTTT
1 TTGGCCCATTTTCTCCTTTT
49226242 TT
1 TT
49226244 TCACTCTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.05, C:0.27, G:0.12, T:0.56
Consensus pattern (20 bp):
TTGGCCCATTTTCTCCTTTT
Found at i:49228663 original size:28 final size:28
Alignment explanation
Indices: 49228631--49228699 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
49228621 GCGTAGATCA
49228631 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
49228659 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
49228687 CGATA-TACCCCTA
1 CGAAATTACCCCTA
49228700 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Done.