Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 165 of 410
Found at i:50305772 original size:80 final size:79
Alignment explanation
Indices: 50305638--50305788 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
50305628 TTAATCACGT
*
50305638 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
50305703 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
50305718 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
50305781 CCGGATAT
64 CCGGATAT
50305789 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:50315684 original size:40 final size:40
Alignment explanation
Indices: 50315557--50315686 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
50315547 ATGCTGGAAA
* *
50315557 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
50315597 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
50315637 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
50315677 TTATATCCGG
1 TTATATCCGG
50315687 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:50315685 original size:80 final size:79
Alignment explanation
Indices: 50315520--50315686 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
50315510 CAATTGAATG
* *
50315520 ATATCCGGGCTAAGCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
50315585 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
50315599 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
50315663 -ATTCGTGC-ACGTGGTT
64 AATT-GTGCTA-GTGGCT
50315679 ATATCCGG
1 ATATCCGG
50315687 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:50323675 original size:40 final size:40
Alignment explanation
Indices: 50323548--50323677 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
50323538 ATGCTGGAAA
* *
50323548 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
50323588 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
50323628 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
50323668 TTATATCCGG
1 TTATATCCGG
50323678 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:50323676 original size:80 final size:79
Alignment explanation
Indices: 50323511--50323677 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
50323501 CAATTGAATG
* *
50323511 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
50323576 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
50323590 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
50323654 -ATTCGTGC-ACGTGGTT
64 AATT-GTGCTA-GTGGCT
50323670 ATATCCGG
1 ATATCCGG
50323678 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 29 0.39
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:50336648 original size:44 final size:45
Alignment explanation
Indices: 50336543--50336664 Score: 147
Period size: 44 Copynumber: 2.7 Consensus size: 45
50336533 CTAGGAATTA
* * *
50336543 AGAAATCTGAGCTCGTTGAGTTGGTCTGAGTTCGTGATAAATGTG
1 AGAAATCCGAGCTCGTTGAGTTGGTCCGAGTTCGTGATAAATATG
* * * **
50336588 AGAAATTCGAACTCGTTGAGTTGGTCCGGGTT-GTGATATGTATG
1 AGAAATCCGAGCTCGTTGAGTTGGTCCGAGTTCGTGATAAATATG
**
50336632 AGGCATCCGAGCTCGTTGAGTTGGTCCGAGTTC
1 AGAAATCCGAGCTCGTTGAGTTGGTCCGAGTTC
50336665 ATTATGGATG
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
44 36 0.57
45 27 0.43
ACGTcount: A:0.21, C:0.15, G:0.32, T:0.32
Consensus pattern (45 bp):
AGAAATCCGAGCTCGTTGAGTTGGTCCGAGTTCGTGATAAATATG
Found at i:50340929 original size:28 final size:28
Alignment explanation
Indices: 50340864--50340964 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
50340854 ATAGTGAATC
*
50340864 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
50340893 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50340921 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
50340951 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50340965 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50344935 original size:23 final size:23
Alignment explanation
Indices: 50344905--50345014 Score: 109
Period size: 23 Copynumber: 4.8 Consensus size: 23
50344895 TGATGAACAA
*
50344905 TAAGCTCTATTGAGCTGAAATGG
1 TAAGCTCTATTGAGCTGAAACGG
* *
50344928 TAAGCTCTATCGAGCTG-AACAG
1 TAAGCTCTATTGAGCTGAAACGG
*
50344950 TAAGCTC-ATACGAGCTGAAACGG
1 TAAGCTCTAT-TGAGCTGAAACGG
* * *
50344973 TAAGCTCCAATGAGCTGAAAACAG
1 TAAGCTCTATTGAGCTG-AAACGG
50344997 TAAGCTCT-TATGAGCTGA
1 TAAGCTCTAT-TGAGCTGA
50345015 TATATCTGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
21 2 0.03
22 17 0.23
23 34 0.47
24 20 0.27
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.24
Consensus pattern (23 bp):
TAAGCTCTATTGAGCTGAAACGG
Found at i:50344954 original size:45 final size:46
Alignment explanation
Indices: 50344898--50345014 Score: 143
Period size: 45 Copynumber: 2.6 Consensus size: 46
50344888 CCTGAGCTGA
* * *
50344898 TGAACAATAAGCTCTAT-TGAGCTGAAATGGTAAGCT-CTATCGAGC
1 TGAACAGTAAGCTCTATATGAGCTGAAACGGTAAGCTCCAAT-GAGC
*
50344943 TGAACAGTAAGCTC-ATACGAGCTGAAACGGTAAGCTCCAATGAGC
1 TGAACAGTAAGCTCTATATGAGCTGAAACGGTAAGCTCCAATGAGC
50344988 TGAAAACAGTAAGCTCT-TATGAGCTGA
1 TG--AACAGTAAGCTCTATATGAGCTGA
50345015 TATATCTGTA
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
44 2 0.03
45 36 0.58
46 3 0.05
47 21 0.34
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (46 bp):
TGAACAGTAAGCTCTATATGAGCTGAAACGGTAAGCTCCAATGAGC
Found at i:50350213 original size:30 final size:30
Alignment explanation
Indices: 50350156--50350213 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
50350146 CACGGCTATG
*
50350156 ACACACGGGTGTGTGGTCTACCCGTGTGTC
1 ACACACGGGTGTGTGGTCTACCAGTGTGTC
*
50350186 ACACTCGGGTGTGTGGATC-ACCAGTGTG
1 ACACACGGGTGTGTGG-TCTACCAGTGTG
50350214 GAACTGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.16, C:0.24, G:0.34, T:0.26
Consensus pattern (30 bp):
ACACACGGGTGTGTGGTCTACCAGTGTGTC
Found at i:50362257 original size:24 final size:24
Alignment explanation
Indices: 50362225--50362271 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
50362215 TGCCAAAGGC
50362225 AGCTTTTAGAACCAGGTATGGACT
1 AGCTTTTAGAACCAGGTATGGACT
50362249 AGCTTTTAGAACCAGGTATGGAC
1 AGCTTTTAGAACCAGGTATGGAC
50362272 ACAATGAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (24 bp):
AGCTTTTAGAACCAGGTATGGACT
Found at i:50366468 original size:39 final size:39
Alignment explanation
Indices: 50366413--50366490 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
50366403 AGATTGGTAA
*
50366413 GTTTAGTTTCTGTTATACGAACTTACTGAGCATGTAATG
1 GTTTAGTTTCTATTATACGAACTTACTGAGCATGTAATG
50366452 GTTTAGTTTCTATTATACGAACTTACTGAGCATGTAATG
1 GTTTAGTTTCTATTATACGAACTTACTGAGCATGTAATG
50366491 CTTACTCCGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (39 bp):
GTTTAGTTTCTATTATACGAACTTACTGAGCATGTAATG
Found at i:50370263 original size:49 final size:47
Alignment explanation
Indices: 50370059--50370322 Score: 202
Period size: 46 Copynumber: 5.6 Consensus size: 47
50370049 TATGTACCAG
* * * * *
50370059 TGTAAGA-CATGTCTGGGACAT-GTATCGACC-ACATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCG-CCTAGATT-TGATAGCTAA
* * ** * *
50370105 TGTAAGA-CATGTTTGGGACAT-GCATCGGCTACGAGATG-T-GCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGCCTA-GATTTGATAGCTAA
* * * *
50370149 TGTAAGACCATGTCTAGGACATGGCATCAGCATAGATATGTGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GCCTAGAT-T-TGATAGCTAA
* * *
50370199 TGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATTTCGATAGTTAA
1 TGTAAGACCATGTCTGGGACATGGCATC-GCCTAGATTT-GATAGCTAA
* * *
50370248 TGTAAGACCATGTCTGGGACATGGCATCGACTTGA-TGGATGAGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGCCTAGATTTGAT-AGCTAA
50370295 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
50370323 AGCATTATAC
Statistics
Matches: 179, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
44 12 0.07
45 13 0.07
46 38 0.21
47 38 0.21
48 8 0.04
49 34 0.19
50 36 0.20
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGCCTAGATTTGATAGCTAA
Found at i:50370313 original size:47 final size:47
Alignment explanation
Indices: 50370105--50370322 Score: 189
Period size: 47 Copynumber: 4.6 Consensus size: 47
50370095 TGAGAGCCAG
* * * * *
50370105 TGTAAGA-CATGTTTGGGACAT-GCATCGGCTACGA--GATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTA-GATGGATGAGCTAA
* *
50370149 TGTAAGACCATGTCTAGGACATGGCATC-AGCATAGATATGTGA-GAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGA-C-TAG--ATG-GATGAGCTAA
* * * * *
50370199 TGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATTTCGAT-AGTTAA
1 TGTAAGACCATGTCTGGGACATGGCATC-GACTAGA--TGGATGAGCTAA
*
50370248 TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACTAGATGGATGAGCTAA
50370295 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
50370323 AGCATTATAC
Statistics
Matches: 142, Mismatches: 17, Indels: 27
0.76 0.09 0.15
Matches are distributed among these distances:
44 7 0.05
45 12 0.08
46 11 0.08
47 35 0.25
48 7 0.05
49 33 0.23
50 34 0.24
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTAGATGGATGAGCTAA
Found at i:50373199 original size:20 final size:21
Alignment explanation
Indices: 50373161--50373199 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50373151 TTATAATGAC
*
50373161 CACGCGGGCGTGTTGCCCTTT
1 CACGCAGGCGTGTTGCCCTTT
50373182 CACGCAGGCGTG-TGCCCT
1 CACGCAGGCGTGTTGCCCT
50373200 ATTTCAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.08, C:0.36, G:0.33, T:0.23
Consensus pattern (21 bp):
CACGCAGGCGTGTTGCCCTTT
Found at i:50379513 original size:45 final size:46
Alignment explanation
Indices: 50379414--50379538 Score: 137
Period size: 45 Copynumber: 2.7 Consensus size: 46
50379404 TATTTGTGTG
* * * * *
50379414 CCAGTGTAAGACATGTCTGGGACATGGCATCGACATTGGGACGAGAG
1 CCAGTGTAAGACATGTCTAGGACAT-GCATCGGCATCGAGACGAGAA
* * *
50379461 CTAGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGATGTA-AA
1 CCAGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGACG-AGAA
*
50379506 CCAGTGTAAGACATGTCTAGGACATGCTTCGGC
1 CCAGTGTAAGACATGTCTAGGACATGCATCGGC
50379539 TATGAGATGT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
45 30 0.45
46 20 0.30
47 17 0.25
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGACGAGAA
Found at i:50379566 original size:45 final size:44
Alignment explanation
Indices: 50379414--50379575 Score: 132
Period size: 45 Copynumber: 3.5 Consensus size: 44
50379404 TATTTGTGTG
* * * * *
50379414 CCAGTGTAAGACATGTCTGGGACATGGCATCGACATTGGGACG-AGA
1 CCAGTGTAAGACATGTCT-GGACAT-GCATCGGCCTCGAGATGTA-A
*
50379460 GCTAGTGTAAGACATGTCTGGACATGCATCGGCCTCGAGATGTAAA
1 -CCAGTGTAAGACATGTCTGGACATGCATCGGCCTCGAGATGT-AA
* * *
50379506 CCAGTGTAAGACATGTCTAGGACATGCTTCGG-CTATGAGATGT-G
1 CCAGTGTAAGACATGTCT-GGACATGCATCGGCCT-CGAGATGTAA
*
50379550 TCAGTGTAAGACCATGTCTGGGACAT
1 CCAGTGTAAGA-CATGTCT-GGACAT
50379576 CACATCGACA
Statistics
Matches: 98, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
44 10 0.10
45 44 0.45
46 26 0.27
47 18 0.18
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
CCAGTGTAAGACATGTCTGGACATGCATCGGCCTCGAGATGTAA
Found at i:50379661 original size:50 final size:48
Alignment explanation
Indices: 50379551--50379728 Score: 151
Period size: 48 Copynumber: 3.6 Consensus size: 48
50379541 TGAGATGTGT
** * *
50379551 CAGTGTAAGACCATGTCTGGGACATCACATCGACACGTATAGAGGTGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGAATAGAGGAGC
* * * *
50379599 CAGTGTAAGACCATATCTGGGATATGGCATCGGCACGAATATGTGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGAATA-GAG-GAGC
* * * * * * * *
50379649 TAGTGTAAGACCATGCCTGGGACATGGCATCAGCCTCGATTTTG-GTAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GACACGA-ATAGAGGAGC
* *
50379698 TAGTGTAAGACCATGTCTAGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
50379729 AGCATTATAC
Statistics
Matches: 106, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
48 35 0.33
49 33 0.31
50 31 0.29
51 6 0.06
52 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGAATAGAGGAGC
Found at i:50387354 original size:44 final size:43
Alignment explanation
Indices: 50387244--50387378 Score: 182
Period size: 44 Copynumber: 3.0 Consensus size: 43
50387234 TATTCTAAAA
*
50387244 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-TGAG--ATGT
*
50387292 GCCGGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ATGAGATGT
*
50387336 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATG-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATGAGATGT
50387378 G
1 G
50387379 TAAGAGCCAG
Statistics
Matches: 82, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
42 6 0.07
43 3 0.04
44 35 0.43
46 12 0.15
47 15 0.18
48 11 0.13
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (43 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATGAGATGT
Found at i:50393178 original size:105 final size:106
Alignment explanation
Indices: 50393022--50393234 Score: 387
Period size: 105 Copynumber: 2.0 Consensus size: 106
50393012 TCTACTTGCA
50393022 TCCCTCCTTTCTTTAGGAGATAAGTGAATCCCAATACGAAATTCATAATAACCCCTTT-TCATTT
1 TCCCTCCTTTCTTTAGGAGATAAGTGAATCCCAATACGAAATTCATAATAACCCCTTTCTCATTT
50393086 TCTTTCCACTGTCATCACTGACAGTAATAATCT-GAATACAT
66 T-TTTCCACTGTCATCACTGACAGTAATAATCTCGAATACAT
50393127 TCCCTCCTTTCTTTAGGAGATAAGTGATATCCCAATACGAAATTCAT-ATAACCCCTTTCTCATT
1 TCCCTCCTTTCTTTAGGAGATAAGTGA-ATCCCAATACGAAATTCATAATAACCCCTTTCTCATT
50393191 TTTTTCCACTGTCATCACTGACAGTAATAATCTCGAATACAT
65 TTTTTCCACTGTCATCACTGACAGTAATAATCTCGAATACAT
50393233 TC
1 TC
50393235 AATATTTGGC
Statistics
Matches: 105, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
105 69 0.66
106 36 0.34
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (106 bp):
TCCCTCCTTTCTTTAGGAGATAAGTGAATCCCAATACGAAATTCATAATAACCCCTTTCTCATTT
TTTTCCACTGTCATCACTGACAGTAATAATCTCGAATACAT
Found at i:50394888 original size:46 final size:44
Alignment explanation
Indices: 50394826--50395032 Score: 154
Period size: 46 Copynumber: 4.5 Consensus size: 44
50394816 GTCAATGTTG
* * *
50394826 TGTCCCAGACAGGTCTTACACTAACACATGTAACCGT-GCCAATGCA
1 TGTCCCAGACATGTCTTACACTAACACATCT---CGTAGCCAACGCA
* * *
50394872 TGTCCCAGACATGTCTTACACTAGCACATCTTGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAACACATCTCGTAGCCAACGCA
* * *
50394916 TGTCCCAGACATGTCTTACAC-AGGCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTA-AC--ACATCTCGTA-GCCAACGCA
* * *
50394962 TGTCCCAGACATGTCTTACACTAGCACTCATCTC-AATG-CAGAAGCCA
1 TGTCCCAGACATGTCTTACACTA--ACACATCTCGTA-GCCA-ACG-CA
50395009 TGTCCCAGACATGATCTTACACTA
1 TGTCCCAGACATG-TCTTACACTA
50395033 GCTCTCATTA
Statistics
Matches: 136, Mismatches: 14, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.02
44 30 0.22
45 2 0.01
46 74 0.54
47 16 0.12
48 11 0.08
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAACACATCTCGTAGCCAACGCA
Found at i:50394979 original size:90 final size:95
Alignment explanation
Indices: 50394867--50395083 Score: 270
Period size: 94 Copynumber: 2.3 Consensus size: 95
50394857 AACCGTGCCA
** * *
50394867 ATGCATGTCCCAGACATGTCTTACACTAGCACATC-T-TGTA-GCCGACG-CATGTCCCAGACAT
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATCATCTCAATGCAGAAGCCATGTCCCAGACAT
*
50394928 G-TCTTACAC-AGGCTAACATCTCGA-GGCCG
66 GATCTTACACTA-GCTAACAT-TAGATGGCCG
50394957 ATGCATGTCCCAGACATGTCTTACACTAGCAC-TCATCTCAATGCAGAAGCCATGTCCCAGACAT
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATCATCTCAATGCAGAAGCCATGTCCCAGACAT
** *
50395021 GATCTTACACTAGCTCTCATTATATGGCCG
66 GATCTTACACTAGCTAACATTAGATGGCCG
* *
50395051 ATGCATGTCCCAGACATGTCTAACACTGGCACA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACA
50395084 CATATCTCAT
Statistics
Matches: 109, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
89 2 0.02
90 33 0.30
91 2 0.02
92 5 0.05
93 17 0.16
94 49 0.45
95 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (95 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACATCATCTCAATGCAGAAGCCATGTCCCAGACAT
GATCTTACACTAGCTAACATTAGATGGCCG
Found at i:50398253 original size:40 final size:39
Alignment explanation
Indices: 50398204--50398411 Score: 247
Period size: 40 Copynumber: 5.2 Consensus size: 39
50398194 TCTTCGGAAT
* *
50398204 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
50398243 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
50398283 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
50398323 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* * * *
50398363 TTAGCCCGGATATAACCATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACAACTAGCA-CAATGCCTTCGGGTC
50398403 TTAGCCCGG
1 TTAGCCCGG
50398412 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 141 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:50400215 original size:27 final size:27
Alignment explanation
Indices: 50400162--50400243 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
50400152 GTCACAGTGA
* *
50400162 CAGAGTCACTAGATACAGAT-ATATGTGG
1 CAGAGACACCAGAT-CAGATAAT-TGTGG
50400190 CAGAGACACCAGATCAGATAATTGTGG
1 CAGAGACACCAGATCAGATAATTGTGG
* *
50400217 CAGAGCCACCAGGTCAGATAATTGTGG
1 CAGAGACACCAGATCAGATAATTGTGG
50400244 TATAGCCACC
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 35 0.71
28 14 0.29
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (27 bp):
CAGAGACACCAGATCAGATAATTGTGG
Found at i:50400250 original size:27 final size:27
Alignment explanation
Indices: 50400177--50400256 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
50400167 TCACTAGATA
* *
50400177 CAGAT-ATATGTGGCAGAGACACCAGAT
1 CAGATAAT-TGTGGCAGAGCCACCAGGT
50400204 CAGATAATTGTGGCAGAGCCACCAGGT
1 CAGATAATTGTGGCAGAGCCACCAGGT
* *
50400231 CAGATAATTGTGGTATAGCCACCAGG
1 CAGATAATTGTGGCAGAGCCACCAGG
50400257 ACGCTTCCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 46 0.96
28 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.20
Consensus pattern (27 bp):
CAGATAATTGTGGCAGAGCCACCAGGT
Found at i:50404281 original size:29 final size:29
Alignment explanation
Indices: 50404256--50404349 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
50404246 TCACACACCC
*
50404256 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
50404285 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
50404314 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
50404343 AGTGCCA
1 AGTGCCA
50404350 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:50404281 original size:58 final size:58
Alignment explanation
Indices: 50404219--50404349 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
50404209 ATTTAAGCTC
* * * *
50404219 GCACACATAGTGCCATACCCTTCGAGC-TCACACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-ACACACCCAGTGCCATATATTTCCAGCAT
* * * **
50404277 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATACACACCCAGTGCCATATATTTCCAGCAT
50404335 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
50404350 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 62 0.98
59 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATACACACCCAGTGCCATATATTTCCAGCAT
Found at i:50411416 original size:27 final size:26
Alignment explanation
Indices: 50411354--50411492 Score: 143
Period size: 27 Copynumber: 5.2 Consensus size: 26
50411344 AGCATGGCTG
* * **
50411354 CCAGAACAAATAATGTGACAGAATCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
50411380 CGAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
50411408 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
50411435 CCAGATCAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
* ** *
50411462 CTAGGTCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
50411489 CCAG
1 CCAG
50411493 GACGCTTCCT
Statistics
Matches: 98, Mismatches: 11, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
26 5 0.05
27 78 0.80
28 15 0.15
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50411445 original size:54 final size:54
Alignment explanation
Indices: 50411354--50411492 Score: 163
Period size: 54 Copynumber: 2.6 Consensus size: 54
50411344 AGCATGGCTG
* * ** *
50411354 CCAGAACAAATAATGTGACAGAATCACGAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
*
50411408 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* ** *
50411462 CTAGGTCAGATAATTGTGGCATAGCCACCAG
1 CCAGAACAGATAA-TGTGGCAGAGCCACCAG
50411493 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 56 0.77
55 16 0.22
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:50424898 original size:19 final size:19
Alignment explanation
Indices: 50424874--50424913 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
50424864 TGAAAATGTG
50424874 TAAGTTATGCCTATAAATT
1 TAAGTTATGCCTATAAATT
*
50424893 TAAGTTATGCCTATGAATT
1 TAAGTTATGCCTATAAATT
50424912 TA
1 TA
50424914 TGATGACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (19 bp):
TAAGTTATGCCTATAAATT
Found at i:50429493 original size:12 final size:12
Alignment explanation
Indices: 50429476--50429505 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
50429466 CCCCACACGC
50429476 CCGTGTGTCAGG
1 CCGTGTGTCAGG
*
50429488 CCGTGTGTTAGG
1 CCGTGTGTCAGG
50429500 CCGTGT
1 CCGTGT
50429506 AACTCACTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGTCAGG
Found at i:50436848 original size:10 final size:10
Alignment explanation
Indices: 50436833--50436866 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
50436823 TTTACATATT
50436833 CAAAACACAC
1 CAAAACACAC
*
50436843 CAAAACATAC
1 CAAAACACAC
50436853 CAAAACACAC
1 CAAAACACAC
50436863 CAAA
1 CAAA
50436867 TAACATGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.62, C:0.35, G:0.00, T:0.03
Consensus pattern (10 bp):
CAAAACACAC
Found at i:50443079 original size:24 final size:24
Alignment explanation
Indices: 50443052--50443129 Score: 113
Period size: 24 Copynumber: 3.2 Consensus size: 24
50443042 AAGGCTGTCA
50443052 GGAGAAGATTT-GGAAGCTGATAAG
1 GGAGAAGATTTAGG-AGCTGATAAG
*
50443076 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
50443100 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
50443124 GGAGAA
1 GGAGAA
50443130 CGGTGTTGGC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
24 48 0.96
25 2 0.04
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:50450850 original size:24 final size:24
Alignment explanation
Indices: 50450772--50450860 Score: 146
Period size: 23 Copynumber: 3.8 Consensus size: 24
50450762 AAGGCTGTCA
* *
50450772 GGAGAAGATTTGGGAGCT-ATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
50450795 GGAGAGGATTTAGGAGCTGATAA-
1 GGAGAGGATTTAGGAGCTGATAAG
50450818 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
50450842 GGAGAGGATTTAGGAGCTG
1 GGAGAGGATTTAGGAGCTG
50450861 GAGAGATTAG
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
23 39 0.63
24 23 0.37
ACGTcount: A:0.33, C:0.04, G:0.42, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:50450853 original size:47 final size:46
Alignment explanation
Indices: 50450771--50450860 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 46
50450761 AAAGGCTGTC
*
50450771 AGGAGAAGATTTGGGAGCTATAAGGGAGAGGATTTAGGAGCTGATA
1 AGGAGAAGATTTAGGAGCTATAAGGGAGAGGATTTAGGAGCTGATA
*
50450817 AGGAGAGGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGCTG
1 AGGAGAAGATTTAGGAGCT-ATAAGGGAGAGGATTTAGGAGCTG
50450861 GAGAGATTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
46 17 0.41
47 24 0.59
ACGTcount: A:0.33, C:0.04, G:0.41, T:0.21
Consensus pattern (46 bp):
AGGAGAAGATTTAGGAGCTATAAGGGAGAGGATTTAGGAGCTGATA
Found at i:50452323 original size:27 final size:27
Alignment explanation
Indices: 50452283--50452393 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
50452273 GAGGAGCGTC
* *
50452283 CTGGTGGCTA-TGCCACAAGTATCTGAT
1 CTGGTGGC-ACTGCCACAATTATCTGTT
*
50452310 CTGGTGGCACTGCCAC-ATATATTTGTT
1 CTGGTGGCACTGCCACAAT-TATCTGTT
* *
50452337 CTAGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCACTGCCACAATTATCTGTT
* *
50452364 CTGGTGACACTGTCAC-ATTATCTGTT
1 CTGGTGGCACTGCCACAATTATCTGTT
50452390 CTGG
1 CTGG
50452394 CAGCCATACT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 16 0.23
27 53 0.75
28 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAATTATCTGTT
Found at i:50452368 original size:54 final size:53
Alignment explanation
Indices: 50452286--50452391 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 53
50452276 GAGCGTCCTG
* *
50452286 GTGGCTATGCCACAAGTATCTGATCTGGTGGCACTGCCACATATATTTGTTCTA
1 GTGGCTATGCCACAAGTATCTGATCTGGTGACACTGCCACAT-TATCTGTTCTA
* * * *
50452340 GTGGCTCTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTTCT
1 GTGGCTATGCCACAAGTATCTGATCTGGTGACACTGCCACATTATCTGTTCT
50452392 GGCAGCCATA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 9 0.20
54 37 0.80
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (53 bp):
GTGGCTATGCCACAAGTATCTGATCTGGTGACACTGCCACATTATCTGTTCTA
Found at i:50458708 original size:27 final size:26
Alignment explanation
Indices: 50458664--50458714 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
50458654 CTCGCTGCAA
*
50458664 TCTGGTGGCCTCGCCACATATATCTCT
1 TCTGGTGACCTCGCCACA-ATATCTCT
* *
50458691 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
50458715 GGCAGCCTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTCT
Found at i:50462240 original size:40 final size:40
Alignment explanation
Indices: 50462144--50462321 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
50462134 CGAATGGTAT
* * * *
50462144 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
50462185 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
50462225 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA-TTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
50462264 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
50462304 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
50462322 ACAATCGAGC
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.29
40 58 0.50
41 25 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:50462284 original size:79 final size:81
Alignment explanation
Indices: 50462144--50462321 Score: 236
Period size: 79 Copynumber: 2.2 Consensus size: 81
50462134 CGAATGGTAT
* *
50462144 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
50462209 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * *
50462225 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GA-TTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
50462287 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
50462304 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
50462322 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 57 0.67
80 1 0.01
81 26 0.31
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:50462342 original size:40 final size:40
Alignment explanation
Indices: 50462264--50462347 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
50462254 ATTACTAAAT
* * *
50462264 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
50462304 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
50462344 CCGG
1 CCGG
50462348 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:50470298 original size:39 final size:40
Alignment explanation
Indices: 50470203--50470298 Score: 104
Period size: 39 Copynumber: 2.4 Consensus size: 40
50470193 TCGAATGTAT
* * * *
50470203 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGT-CCGAAGGCATTTGTGCTAAGTGACCAAAA
* * * *
50470244 CCGGGTCAATTCCGAAGGCATTTGTGC-GAGTTACCAAAA
1 CCGGGTTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAAA
50470283 CCGGGTTAAGTCCGAA
1 CCGGGTTAAGTCCGAA
50470299 AAACCGGGTT
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
39 22 0.49
40 15 0.33
41 8 0.18
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAAA
Found at i:50470357 original size:40 final size:40
Alignment explanation
Indices: 50470300--50470404 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 40
50470290 AAGTCCGAAA
* * * * *
50470300 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-
1 AACCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTAT
50470339 AATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTAT
1 AA-CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTAT
*
50470380 AACCGGGCT-ATGTCCCGAAGACAAT
1 AACCGGGCTAAT-TCCCGAAGGCAAT
50470405 CGAGCGAGTC
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 4 0.07
40 51 0.89
41 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23
Consensus pattern (40 bp):
AACCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTAT
Found at i:50470384 original size:99 final size:99
Alignment explanation
Indices: 50470203--50470386 Score: 255
Period size: 99 Copynumber: 1.9 Consensus size: 99
50470193 TCGAATGTAT
* *
50470203 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCGAAGGCAATTG
* *
50470268 TGCGAGTTACCAAAACCGGGTTAAGTCCGAAAAA
66 TGCGAATCACCAAAACCGGGTTAAGTCCGAAAAA
* * *
50470302 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATT-CCGAAGGCAAT
* *
50470365 TGTGCGAATCACTATAACCGGG
64 TGTGCGAATCACCAAAACCGGG
50470387 CTATGTCCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
97 1 0.01
98 19 0.26
99 54 0.73
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (99 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCGAAGGCAATTG
TGCGAATCACCAAAACCGGGTTAAGTCCGAAAAA
Found at i:50470420 original size:40 final size:40
Alignment explanation
Indices: 50470342--50470425 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
50470332 GTTACTAAAT
* * *
50470342 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
50470382 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
50470422 CCGG
1 CCGG
50470426 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:50472098 original size:11 final size:11
Alignment explanation
Indices: 50472082--50472106 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50472072 TGATAAGTAA
50472082 ATTATTATTTT
1 ATTATTATTTT
50472093 ATTATTATTTT
1 ATTATTATTTT
50472104 ATT
1 ATT
50472107 GTATGTGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:50480665 original size:40 final size:40
Alignment explanation
Indices: 50480591--50480768 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
50480581 GAGTCACGTA
** *
50480591 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
50480630 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
50480670 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
50480710 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
50480750 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
50480769 TATCATTCAA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:50483013 original size:43 final size:43
Alignment explanation
Indices: 50482952--50483053 Score: 195
Period size: 43 Copynumber: 2.4 Consensus size: 43
50482942 TGAACACTCG
50482952 TCCGGGCTAGATCCTTTTATAAATGAGATCAACAGATTACCCA
1 TCCGGGCTAGATCCTTTTATAAATGAGATCAACAGATTACCCA
50482995 TCCGGGCTAGATCCTTTTATAAATGAGATCAACAGATTACCCA
1 TCCGGGCTAGATCCTTTTATAAATGAGATCAACAGATTACCCA
*
50483038 TCCGGGCTAAATCCTT
1 TCCGGGCTAGATCCTT
50483054 ACTGCAACAC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
TCCGGGCTAGATCCTTTTATAAATGAGATCAACAGATTACCCA
Found at i:50486232 original size:11 final size:12
Alignment explanation
Indices: 50486207--50486232 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50486197 CTGAGTCAGG
50486207 AAAATATTTTAA
1 AAAATATTTTAA
50486219 AAAATATTTTAA
1 AAAATATTTTAA
50486231 AA
1 AA
50486233 TTATTTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAAATATTTTAA
Found at i:50487428 original size:45 final size:45
Alignment explanation
Indices: 50487366--50487711 Score: 315
Period size: 45 Copynumber: 7.9 Consensus size: 45
50487356 TAGGATTTCG
*
50487366 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
**
50487411 ATATGTATTTTTTTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * * *
50487456 ATATGTGGTTAT-GTGTAAGACCATGTCTGGGACATCGACATCG-T
1 ATATGT-ATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * *
50487500 AT-T-T-TATTCGTGTAAAACCACGTCTGGGATGTTGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* *
50487542 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* ** * * * * * *
50487587 AAATGTGGTTACATGTAAGACCATGTCTGGGACATCGGCATTG-T
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
50487631 ATTTG-A--TTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT
** *
50487673 ATGA-G-A-TAGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 AT-ATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
50487712 TGTTCAATAT
Statistics
Matches: 244, Mismatches: 44, Indels: 28
0.77 0.14 0.09
Matches are distributed among these distances:
40 2 0.01
41 51 0.21
42 10 0.04
43 27 0.11
44 9 0.04
45 142 0.58
46 3 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (45 bp):
ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:50487609 original size:131 final size:131
Alignment explanation
Indices: 50487375--50487711 Score: 466
Period size: 131 Copynumber: 2.6 Consensus size: 131
50487365 GATATGTGTT
* * **
50487375 TTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTATTTTTTTGTAAGACCACGTCTG
1 TTCGTGTAAGACCACGTCTGGGAAGTTGGCATCGATATATGTGTTTTCATGTAAGACCACGTCTG
* * ** *
50487440 GGACGTTGGCATCGATATATGTGGTTATGTGTAAGACCATGTCTGGGACATCGACATCGTATTTT
66 GGACGTTGGCATCAATAAATGTGGTTACATGTAAGACCATGTCTGGGACATCGACATCGTATTTG
50487505 A
131 A
* * *
50487506 TTCGTGTAAAACCACGTCTGGGATGTTGGCATCGATATATGTGTTTTCGTGTAAGACCACGTCTG
1 TTCGTGTAAGACCACGTCTGGGAAGTTGGCATCGATATATGTGTTTTCATGTAAGACCACGTCTG
* *
50487571 GGACGTTGGCATCAATAAATGTGGTTACATGTAAGACCATGTCTGGGACATCGGCATTGTATTTG
66 GGACGTTGGCATCAATAAATGTGGTTACATGTAAGACCATGTCTGGGACATCGACATCGTATTTG
50487636 A
131 A
* * **
50487637 TTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCG--ATATGAGATAGCATGTAAGACCACGTC
1 TTCGTGTAAGACCAC-GTCTGGGA-AGTTGGCATCGATATATGTGTTTTCATGTAAGACCACGTC
50487698 TGGGACGTTGGCAT
64 TGGGACGTTGGCAT
50487712 TGTTCAATAT
Statistics
Matches: 185, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
129 36 0.19
130 1 0.01
131 147 0.79
132 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (131 bp):
TTCGTGTAAGACCACGTCTGGGAAGTTGGCATCGATATATGTGTTTTCATGTAAGACCACGTCTG
GGACGTTGGCATCAATAAATGTGGTTACATGTAAGACCATGTCTGGGACATCGACATCGTATTTG
A
Found at i:50487641 original size:86 final size:84
Alignment explanation
Indices: 50487551--50487714 Score: 208
Period size: 84 Copynumber: 1.9 Consensus size: 84
50487541 TATATGTGTT
* * *
50487551 TTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCAATAAATGTGGTTA-CATGTAAGACCATGT
1 TTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCAAT--ATG-AGATAGCATGTAAGACCACGT
50487613 CTGGGACATCGGCATTGTATTTGA
61 CTGGGACATCGGCATTGTATTTGA
*
50487637 TTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGAGATAGCATGTAAGACCACGTCTGGG
1 TTCGTGTAAGACCCTGTCTGGGACAGTGGCATCAATATGAGATAGCATGTAAGACCACGTCTGGG
* *
50487702 ACGTTGGCATTGT
66 ACATCGGCATTGT
50487715 TCAATATATG
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
83 3 0.04
84 33 0.48
85 1 0.01
86 31 0.45
87 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (84 bp):
TTCGTGTAAGACCCTGTCTGGGACAGTGGCATCAATATGAGATAGCATGTAAGACCACGTCTGGG
ACATCGGCATTGTATTTGA
Found at i:50489465 original size:6 final size:6
Alignment explanation
Indices: 50489447--50489540 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
50489437 AAGAAACATT
* *
50489447 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGT ATCAGGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * *
50489496 ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
50489541 GTAAATGCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.07
6 56 0.80
7 7 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:50489499 original size:31 final size:31
Alignment explanation
Indices: 50489461--50489540 Score: 142
Period size: 31 Copynumber: 2.6 Consensus size: 31
50489451 GAACTAGAAT
* *
50489461 CAGAATCAGAATCAGAATTAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
50489492 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
50489523 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
50489541 GTAAATGCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:50489714 original size:27 final size:26
Alignment explanation
Indices: 50489672--50489773 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
50489662 GCTTAGTTAT
* *
50489672 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
50489699 CAAATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
50489725 CAGATATTTGTGGCAAAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
50489753 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
50489774 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 6 0.09
27 53 0.79
28 8 0.12
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:50490480 original size:27 final size:27
Alignment explanation
Indices: 50490424--50490752 Score: 385
Period size: 27 Copynumber: 12.2 Consensus size: 27
50490414 GGGCAAAATG
* * * * *
50490424 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
50490450 GTAATTCCACCCTATAGGTGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
50490477 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
50490504 GTAATTCTACCTTACATGGGTATTAC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
50490530 GATAATTCTACCCTACAGGGGTATCTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
50490557 GATAATTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* **
50490585 GTAATTCTACCTTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
50490612 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
50490639 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
50490666 GTAATTCTACCCTACAGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
50490693 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
50490720 GTAATTCTACCCTATAGGGGTATTCCA
1 GTAATTCTACCCTACAGGGGTATTTCA
50490747 GTAATT
1 GTAATT
50490753 TTATAAATCG
Statistics
Matches: 264, Mismatches: 36, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
26 13 0.05
27 250 0.95
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:50490563 original size:81 final size:81
Alignment explanation
Indices: 50490448--50490752 Score: 439
Period size: 81 Copynumber: 3.8 Consensus size: 81
50490438 CAAGGTATCT
* * * **
50490448 CGGTAATTCCACCCTATAGGTGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
1 CGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
*
50490513 CCTTACATGGGTATTA
66 CCTTACAGGGGTATTA
* * * *
50490529 CGATAATTCTACCCTACAGGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTA
1 CGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
*
50490594 CCTTACAGGGGTATTT
66 CCTTACAGGGGTATTA
* * *
50490610 TGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTA
1 CGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
* *
50490675 CCCTACAGGGGTATTC
66 CCTTACAGGGGTATTA
* * *
50490691 CGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTCCAGTAATT
1 CGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATT
50490753 TTATAAATCG
Statistics
Matches: 198, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 198 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (81 bp):
CGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
CCTTACAGGGGTATTA
Found at i:50490767 original size:27 final size:27
Alignment explanation
Indices: 50490737--50491002 Score: 175
Period size: 27 Copynumber: 9.9 Consensus size: 27
50490727 TACCCTATAG
* *
50490737 GGGTATTCCAGTAATTTTATAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*** * * * *
50490764 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
50490791 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
* **
50490818 GGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
50490845 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTCAGTAATTTTACAAATCGA
** *
50490871 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTCAGTAATTTTACAAATCGA
* *
50490898 GGGGTATTT-TGATAATTTTACAAA-CCA
1 -GGGTATTTCAG-TAATTTTACAAATCGA
** *
50490925 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTCAGTAATTTTACAAATCGA
** * **
50490952 GGGGTATTTTGGTAATTTTATAAATAAA
1 -GGGTATTTCAGTAATTTTACAAATCGA
*
50490980 GGGTATTTTAGTAATTTTACAAA
1 GGGTATTTCAGTAATTTTACAAA
50491003 CCAGGGGTAT
Statistics
Matches: 201, Mismatches: 31, Indels: 14
0.82 0.13 0.06
Matches are distributed among these distances:
26 6 0.03
27 193 0.96
28 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:50490768 original size:54 final size:53
Alignment explanation
Indices: 50490494--50490826 Score: 210
Period size: 54 Copynumber: 6.2 Consensus size: 53
50490484 TACCCTACAG
* * * * * * **
50490494 GGGTATTTCAGTAATTCTACCTTACATGGGTATTACGATAATTCTACCCTAC-A
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTTTACAAT-CGA
* * * * **
50490547 GGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTAC-A
1 -GGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTTTACAAT-CGA
* * ** *
50490601 GGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT-ATTTCTACCCTACAA
1 -GGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTT-TACAAT-CGA
* * * *
50490656 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTATAG-
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTTTA--CAATCGA
* * *
50490710 GGGTATTTCGGTAATTCTACCCTATAGGGGTATTCCAGTAATTTTATAAATCGA
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTTTA-CAATCGA
*** *** * *
50490764 GGGTAAAACGGTAATTCTA-TAAATCAAGGGTACTT-TGGTAATTTTACAAGTCGA
1 GGGTATTTCGGTAATTCTACCCTA-CAGGGGTA-TTCCGGTAATTTTACAA-TCGA
50490818 GGGTATTTC
1 GGGTATTTC
50490827 AATAATTTTA
Statistics
Matches: 227, Mismatches: 43, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
53 9 0.04
54 210 0.93
55 6 0.03
56 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (53 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTTTACAATCGA
Found at i:50490903 original size:81 final size:80
Alignment explanation
Indices: 50490784--50491023 Score: 275
Period size: 81 Copynumber: 3.0 Consensus size: 80
50490774 GTAATTCTAT
* * * * * ***
50490784 AAATCAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAATAG-GGGTATTTTAATAATTTTACAAACCAG-GGG
50490848 TATTTCAGTAATTTCAC
64 TATTTCAGTAATTTCAC
*
50490865 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAA-TAGGGGTATTTTAATAATTTTACAAACCAGGGGT
** *
50490930 ATTTTGGTAATTTTAC
65 ATTTCAGTAATTTCAC
* * * *
50490946 AAACCAGGGGTATTTTGGTAATTTTATAAATAAAGGGTATTTTAGTAATTTTACAAACCAGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAAT-AGGGGTATTTTAATAATTTTACAAACCAGGGGT
**
50491011 ATTTTGGTAATTT
65 ATTTCAGTAATTT
50491024 GGTAAACTAA
Statistics
Matches: 139, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.01
81 135 0.97
82 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (80 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAATAGGGGTATTTTAATAATTTTACAAACCAGGGGTA
TTTCAGTAATTTCAC
Found at i:50491030 original size:27 final size:27
Alignment explanation
Indices: 50490845--50491023 Score: 259
Period size: 27 Copynumber: 6.6 Consensus size: 27
50490835 TACAGGTCGA
** * *
50490845 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
50490872 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
50490899 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
50490926 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
50490953 GGGTATTTTGGTAATTTTATAAATAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
50490980 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
50491007 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
50491024 GGTAAACTAA
Statistics
Matches: 134, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:50493931 original size:42 final size:42
Alignment explanation
Indices: 50493813--50493933 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
50493803 CATACAATAC
* * * *
50493813 CATACCAATGTCATATCCCAGATATGGTCTTACATGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAGATCT
* * *
50493855 CATATTAATGCCAATAGCCCAGCTATGGTCTTACACGA-AGTCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAGA-TCT
*
50493898 CATATCGATGCCATATCCCAGATATGGTCTTACACG
1 CATATCAATGCCATATCCCAGATATGGTCTTACACG
50493934 TAATCTTAGT
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAGATCT
Found at i:50510235 original size:35 final size:35
Alignment explanation
Indices: 50510196--50510268 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
50510186 GCACTATGTG
*
50510196 CAAGTTTCCGTGTATCCATTAGTGTTCCTAGTGTT
1 CAAGTTTCCATGTATCCATTAGTGTTCCTAGTGTT
*
50510231 CAAGTTTCCATGTATCCATTAGTGTTCCTGGTGTT
1 CAAGTTTCCATGTATCCATTAGTGTTCCTAGTGTT
50510266 CAA
1 CAA
50510269 CGGGTAATTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (35 bp):
CAAGTTTCCATGTATCCATTAGTGTTCCTAGTGTT
Found at i:50518402 original size:30 final size:29
Alignment explanation
Indices: 50518308--50518409 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
50518298 TATAGTGAAT
* * *
50518308 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
50518337 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
50518365 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
50518395 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50518410 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:50526384 original size:30 final size:29
Alignment explanation
Indices: 50526290--50526391 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
50526280 TATAGTGAAT
* * *
50526290 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
50526319 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
50526347 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
50526377 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50526392 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:50529062 original size:2 final size:2
Alignment explanation
Indices: 50529055--50529089 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
50529045 ATTTACTTTA
50529055 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50529090 AAGGGATCGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:50532070 original size:38 final size:39
Alignment explanation
Indices: 50532018--50532093 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 39
50532008 GCATGTTAGT
*
50532018 GAGAATGGTTTTCTATTAAAATGAGAAAGAATTGAATAC
1 GAGAATAGTTTTCTATTAAAATGAGAAAGAATTGAATAC
*
50532057 GAGAATAG-TTTCTATTAAAATGATAAAGAATTGAATA
1 GAGAATAGTTTTCTATTAAAATGAGAAAGAATTGAATA
50532094 GCTTAAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 28 0.80
39 7 0.20
ACGTcount: A:0.46, C:0.04, G:0.18, T:0.32
Consensus pattern (39 bp):
GAGAATAGTTTTCTATTAAAATGAGAAAGAATTGAATAC
Found at i:50532803 original size:22 final size:22
Alignment explanation
Indices: 50532778--50532824 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
50532768 TTGGCGTAAG
50532778 TTTAAATGATTGTATATGAAGA
1 TTTAAATGATTGTATATGAAGA
50532800 TTTAAATGATTGTATATGAAGA
1 TTTAAATGATTGTATATGAAGA
50532822 TTT
1 TTT
50532825 CGTGAGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (22 bp):
TTTAAATGATTGTATATGAAGA
Found at i:50535982 original size:40 final size:40
Alignment explanation
Indices: 50535936--50536119 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
50535926 CTCGCACAAG
* * * *
50535936 GCCTTCGGGTCTTAGCCCGAATATGGTTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
50535976 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
50536016 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
50536056 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
50536096 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
50536120 CATTCGAATA
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:50538627 original size:47 final size:46
Alignment explanation
Indices: 50538519--50538728 Score: 175
Period size: 46 Copynumber: 4.5 Consensus size: 46
50538509 TGTGTGAGCT
*
50538519 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACCTT-ATGA-GAG-CC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CA--TTGA-GACGAGTGC
50538566 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAGACGAGTGC
* * * *
50538613 TAGTGTAAGA-CATGTTTGGGACATACATCGGCCTCGAGACGTAAGT-C
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGACG--AGTGC
* ** * *
50538660 AGTGTAAGA-CATGTTTGGGACATGCATTAGC-TATGAGATGTGT-C
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCAT-TGAGACGAGTGC
* *
50538704 AGTGTAAGATCATGTCTGGAACATG
1 AGTGTAAGACCATGTCTGGGACATG
50538729 GTATCGACAC
Statistics
Matches: 141, Mismatches: 13, Indels: 20
0.81 0.07 0.11
Matches are distributed among these distances:
44 12 0.09
45 18 0.13
46 51 0.36
47 41 0.29
48 19 0.13
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGACGAGTGC
Found at i:50538653 original size:46 final size:47
Alignment explanation
Indices: 50538516--50538686 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 47
50538506 ACTTGTGTGA
* *** * *
50538516 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCACCTTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGAGT
* * *
50538563 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACGAGT
* *
50538611 GCTAGTGTAAGA-CATGTTTGGGACATACATCGGCCTCGAGACGTAAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACG--AGT
*
50538659 -C-AGTGTAAGA-CATGTTTGGGACATGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGCAT
50538687 TAGCTATGAG
Statistics
Matches: 106, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
46 40 0.38
47 40 0.38
48 26 0.25
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGAGT
Found at i:50542568 original size:15 final size:15
Alignment explanation
Indices: 50542548--50542576 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
50542538 GCCGGGTGAC
50542548 GGGATTAGAGTAGAA
1 GGGATTAGAGTAGAA
50542563 GGGATTAGAGTAGA
1 GGGATTAGAGTAGA
50542577 CCCAAGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.41, T:0.21
Consensus pattern (15 bp):
GGGATTAGAGTAGAA
Found at i:50546062 original size:47 final size:45
Alignment explanation
Indices: 50545940--50546216 Score: 149
Period size: 46 Copynumber: 6.0 Consensus size: 45
50545930 ACGTCTGGGT
* * *
50545940 CACTTGTGTGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGC
1 CACTTATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
* * *
50545985 CACCTTATGAGAGCCAGTATAAGACCATGTCTAGGACATGACATCGG-
1 CA-CTTATGAGAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGC
* *
50546032 CA-TTGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 CACTT---ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
* * * * * *
50546079 CTC-GA-GACGTAAG-TCATTGTATGACATGTTTGGGACATG-ATTGGC
1 CACTTATGA-G--AGCT-AGTGTAAGACATGTCTGGGACATGCATCGGC
* * * *
50546124 TAC-GA-GATGTGTTAGTGTAAGACATGTCTGGGACATGGCATCGGC
1 CACTTATGA-GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC
**
50546169 ACAGATATGCTAGAGCCTA-TGTAAGACCATGTCTGGGACATGGCATCG
1 -CACTTATG--AGAG-CTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
50546217 ACACCTTACC
Statistics
Matches: 178, Mismatches: 32, Indels: 39
0.71 0.13 0.16
Matches are distributed among these distances:
43 23 0.13
44 4 0.02
45 20 0.11
46 45 0.25
47 31 0.17
48 22 0.12
49 9 0.05
50 24 0.13
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (45 bp):
CACTTATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
Found at i:50546156 original size:43 final size:45
Alignment explanation
Indices: 50546047--50546165 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 45
50546037 AGATGAGTGC
50546047 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGT
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGT-AGT
* * * * * * *
50546093 CATTGTATGACATGTTTGGGACATG-AT-TGGCTACGAGATGT-GT
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGACGTAGT
50546136 TAGTGTAAGACATGTCTGGGACATGGCATC
1 TAGTGTAAGACATGTCTGGGACAT-GCATC
50546166 GGCACAGATA
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
43 22 0.38
44 4 0.07
45 11 0.19
46 21 0.36
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAGT
Found at i:50550094 original size:43 final size:43
Alignment explanation
Indices: 50550004--50550115 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
50549994 TACCGAGATG
* * *
50550004 TGATTACATGTAAGACCATGTCTGGTACATTGACATTGTATTG
1 TGATTACATGTAAGACCATGTCTGGGACATTGACATCGTATTA
*
50550047 TGATTACATGTAAGGCCATGTCTGGGACATTAGA-ATCGCTA-TA
1 TGATTACATGTAAGACCATGTCTGGGACATT-GACATCG-TATTA
* * *
50550090 TGATTTCGTGTAAGACCCTGTCTGGG
1 TGATTACATGTAAGACCATGTCTGGG
50550116 GCAGTGGCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 55 0.93
44 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGACATCGTATTA
Found at i:50564434 original size:14 final size:14
Alignment explanation
Indices: 50564415--50564443 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50564405 TATTATTTCG
50564415 ATGGATCTTTGTAA
1 ATGGATCTTTGTAA
50564429 ATGGATCTTTGTAA
1 ATGGATCTTTGTAA
50564443 A
1 A
50564444 AGTACTCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (14 bp):
ATGGATCTTTGTAA
Found at i:50568001 original size:17 final size:17
Alignment explanation
Indices: 50567979--50568012 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
50567969 AAAACACTTC
50567979 TGAGAAGCATTGCTAAA
1 TGAGAAGCATTGCTAAA
50567996 TGAGAAGCATTGCTAAA
1 TGAGAAGCATTGCTAAA
50568013 CTAAGCCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
TGAGAAGCATTGCTAAA
Found at i:50587185 original size:25 final size:25
Alignment explanation
Indices: 50587151--50587198 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
50587141 GCGTGTGAGA
50587151 CATTAACTCAGAATTTTTCTTAATT
1 CATTAACTCAGAATTTTTCTTAATT
50587176 CATTAACTCAGAATTTTTCTTAA
1 CATTAACTCAGAATTTTTCTTAA
50587199 GTTTTTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.17, G:0.04, T:0.46
Consensus pattern (25 bp):
CATTAACTCAGAATTTTTCTTAATT
Found at i:50589167 original size:46 final size:44
Alignment explanation
Indices: 50589109--50589285 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 44
50589099 TCACTTGTGT
*
50589109 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATT-ATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTGA-GAC
* *
50589155 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGAC
* *
50589201 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGAC-TATGAGAT
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGAC
* *
50589247 GTGTTAGTGTAAGACCATGTCTAGGG-CATAGCATCGGCA
1 GAGCTAGTGTAAGA-CATGTCT-GGGACAT-GCATCGGCA
50589286 CAAATATGCT
Statistics
Matches: 110, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
44 11 0.10
45 17 0.15
46 38 0.35
47 27 0.25
48 17 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAC
Found at i:50590346 original size:41 final size:41
Alignment explanation
Indices: 50590290--50590368 Score: 117
Period size: 41 Copynumber: 1.9 Consensus size: 41
50590280 TGTTTTTGCT
*
50590290 CACGGGCTAGGACACGGGTGTG-T-CATGGCCGTGTGAAGGG
1 CACGGGCCAGGACACGGGTGTGTTCCA-GGCCGTGTGAAGGG
50590330 CACGGGCCAGGGACACGGGTGTGTTCCAGGCCGTGTGAA
1 CACGGGCCA-GGACACGGGTGTGTTCCAGGCCGTGTGAA
50590369 AACCCTGTAG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
40 8 0.23
41 13 0.37
42 12 0.34
43 2 0.06
ACGTcount: A:0.18, C:0.23, G:0.43, T:0.16
Consensus pattern (41 bp):
CACGGGCCAGGACACGGGTGTGTTCCAGGCCGTGTGAAGGG
Found at i:50595946 original size:79 final size:80
Alignment explanation
Indices: 50595807--50595958 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 80
50595797 TCGAATGATG
* * *
50595807 TCCGGGCTAAGTCCCGAAGGCTTTGCGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGCGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
50595872 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* * **
50595887 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGCGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
50595949 TCGTGCGAGT
64 TCGTGCGAGT
50595959 CACTATAACC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.02
79 45 0.71
80 17 0.27
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGCGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:50595971 original size:40 final size:39
Alignment explanation
Indices: 50595860--50595973 Score: 149
Period size: 39 Copynumber: 2.9 Consensus size: 39
50595850 GGACTAGGAT
* *
50595860 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTAAGC
* * *
50595899 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTAAG-C
*
50595939 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCT
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGCT
50595974 TCGTCCCAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 33 0.52
40 29 0.45
41 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTAAGC
Found at i:50595980 original size:40 final size:40
Alignment explanation
Indices: 50595860--50595987 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
50595850 GGACTAGGAT
* * *
50595860 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAGTC
* *
50595899 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGG-TTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTT-AGTC
* *
50595939 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGCTTAGTC
*
50595979 CCAAAGGCA
1 CCGAAGGCA
50595988 ATTGAGTGAG
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 31 0.41
40 39 0.52
41 4 0.05
ACGTcount: A:0.27, C:0.26, G:0.27, T:0.21
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAGTC
Found at i:50599386 original size:22 final size:22
Alignment explanation
Indices: 50599361--50599434 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
50599351 AATTTATAAT
50599361 TGTGAATGTGAACATGCATATG
1 TGTGAATGTGAACATGCATATG
* *
50599383 TGTGATAAG-G-CCGAATGGCCA-ATG
1 TGTGA-ATGTGAAC--AT-G-CATATG
50599407 TGATGAATGTGAACATGCATATG
1 TG-TGAATGTGAACATGCATATG
50599430 TGTGA
1 TGTGA
50599435 TAAGGCCGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
21 1 0.03
22 11 0.28
23 10 0.26
24 10 0.26
25 6 0.15
26 1 0.03
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (22 bp):
TGTGAATGTGAACATGCATATG
Found at i:50599730 original size:47 final size:47
Alignment explanation
Indices: 50599363--50599695 Score: 578
Period size: 47 Copynumber: 7.1 Consensus size: 47
50599353 TTTATAATTG
*
50599363 TGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
*
50599410 TGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
50599457 TGAATGTGAACATGCGA-ATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAACATGC-ATATATGTGATAAGGCCGAATGGCCAATGTGA
*
50599504 TGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
*
50599551 TGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
* *
50599598 TGAATGTGAACATACAAATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
**
50599645 TGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGTGA
1 TGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
50599692 TGAA
1 TGAA
50599696 CGTGGAAGTG
Statistics
Matches: 274, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 272 0.99
48 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
TGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
Found at i:50599896 original size:37 final size:37
Alignment explanation
Indices: 50599840--50599989 Score: 246
Period size: 37 Copynumber: 4.1 Consensus size: 37
50599830 GGAAATATAT
50599840 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
50599877 TCCGAGTAAGACCCAATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
50599914 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
50599951 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
50599988 TC
1 TC
50599990 TGAGCTAAAG
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:50601315 original size:40 final size:40
Alignment explanation
Indices: 50601263--50601542 Score: 411
Period size: 40 Copynumber: 7.0 Consensus size: 40
50601253 TGAGAGTTAG
* *
50601263 ATATCCGGGCTAAGCCCCGAAGAGCATTTGTGCTGGTGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGAT
*
50601303 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGAT
* *
50601343 ATATCTGGGCT-AGATCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTGGTGAT
*
50601383 ATATCCGGGCT-AGATCCCGAAGAGCATTCGAGCTGGTGAT
1 ATATCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTGGTGAT
*
50601423 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGAT
* *
50601463 ATATCCGAGCTAAGTCCCGAAGAGCATTCGAGCTGGTGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGAT
** * *
50601503 ATATCCGGGCTAAGTCTTGAAGAGCATTCATACTGGTGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGAT
50601543 GTGTATTCGG
Statistics
Matches: 220, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 216 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGAT
Found at i:50601734 original size:25 final size:25
Alignment explanation
Indices: 50601705--50601755 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
50601695 ATGTAATAAC
50601705 GAATGAATAAGA-GCACTATGTGTGT
1 GAATG-ATAAGAGGCACTATGTGTGT
* *
50601730 GAATGATTAGAGGCACTGTGTGTGT
1 GAATGATAAGAGGCACTATGTGTGT
50601755 G
1 G
50601756 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.29
Consensus pattern (25 bp):
GAATGATAAGAGGCACTATGTGTGT
Found at i:50603278 original size:22 final size:22
Alignment explanation
Indices: 50603251--50603372 Score: 72
Period size: 22 Copynumber: 5.3 Consensus size: 22
50603241 CATGCATATG
50603251 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
50603273 TGTGATGAATG-TGAACAT-GCAAATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
50603298 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
50603320 TGTGATGAATG-TGAACAT-GCAAATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
50603345 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
50603367 TGTGAT
1 TGTGAT
50603373 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 12, Indels: 28
0.65 0.11 0.25
Matches are distributed among these distances:
22 22 0.30
23 18 0.24
24 18 0.24
25 16 0.22
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:50603280 original size:47 final size:47
Alignment explanation
Indices: 50603229--50603422 Score: 343
Period size: 47 Copynumber: 4.1 Consensus size: 47
50603219 GATTCTATGA
* *
50603229 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
50603276 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
50603323 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
* **
50603370 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
50603417 GATGAA
1 GATGAA
50603423 CGTGGAAGTG
Statistics
Matches: 142, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 142 1.00
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
Found at i:50603745 original size:20 final size:22
Alignment explanation
Indices: 50603716--50603755 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
50603706 ATTGATTTAT
*
50603716 GGAAATTATA-AT-TATTATTA
1 GGAAAATATATATATATTATTA
50603736 GGAAAATATATATATATTAT
1 GGAAAATATATATATATTAT
50603756 CGTATTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (22 bp):
GGAAAATATATATATATTATTA
Found at i:50613903 original size:40 final size:40
Alignment explanation
Indices: 50613858--50614025 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
50613848 CGGAATATAA
50613858 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
50613898 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
50613938 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50613978 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
50614018 CCGGATAT
1 CCGGATAT
50614026 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50614008 original size:80 final size:80
Alignment explanation
Indices: 50613874--50614023 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
50613864 ATAATCACGT
*
50613874 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
50613938 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
50613954 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
50614017 CCCGGAT
64 CCCGGAT
50614024 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:50616437 original size:25 final size:25
Alignment explanation
Indices: 50616408--50616455 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50616398 TTATAATATG
* * *
50616408 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50616433 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50616456 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50616524 original size:20 final size:20
Alignment explanation
Indices: 50616499--50616557 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
50616489 TAAATATGGT
50616499 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
50616519 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
50616539 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50616558 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:50616539 original size:11 final size:11
Alignment explanation
Indices: 50616503--50616557 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
50616493 TATGGTATGT
50616503 ATGATATGCAC
1 ATGATATGCAC
* *
50616514 ATGAAATG--T
1 ATGATATGCAC
50616523 ATGATATGCAC
1 ATGATATGCAC
*
50616534 ATGATATG--T
1 ATGATATGCAC
50616543 ATGATATGCAC
1 ATGATATGCAC
50616554 ATGA
1 ATGA
50616558 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50616635 original size:24 final size:24
Alignment explanation
Indices: 50616608--50616760 Score: 227
Period size: 24 Copynumber: 6.4 Consensus size: 24
50616598 GAGGAAGTGA
*
50616608 AAAAGGGCTTATGCCTCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
50616632 AAAAGGGCTTATGCCCTAGTAATC
1 AAAAGGGCTTATGCCCCAGTTATC
50616656 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50616680 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
50616703 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
50616727 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
50616751 AAAAGAGGCT
1 AAAAG-GGCT
50616761 AGGCCTCCAA
Statistics
Matches: 119, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
23 23 0.19
24 92 0.77
25 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:50617024 original size:30 final size:30
Alignment explanation
Indices: 50616966--50617028 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
50616956 CGTTTACAGT
*
50616966 AAAGGCTTCGGCCCAGTAATATGAAATATG
1 AAAGGCTTCGGCCCAGCAATATGAAATATG
** *
50616996 AAAGGCTTCGGCCCAGCGTTATGGAATATG
1 AAAGGCTTCGGCCCAGCAATATGAAATATG
50617026 AAA
1 AAA
50617029 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGCAATATGAAATATG
Found at i:50617925 original size:37 final size:37
Alignment explanation
Indices: 50617875--50617987 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
50617865 GGAAATATAT
50617875 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
50617912 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
50617949 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
50617986 TC
1 TC
50617988 TGAGCTAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:50630078 original size:28 final size:27
Alignment explanation
Indices: 50630015--50630084 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
50630005 ATAGTGAGTC
50630015 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
50630042 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
50630070 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50630085 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:50632129 original size:17 final size:17
Alignment explanation
Indices: 50632109--50632142 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50632099 ACAGATCTCA
* *
50632109 CCAAAACGCAGACTTCG
1 CCAAAACACAAACTTCG
50632126 CCAAAACACAAACTTCG
1 CCAAAACACAAACTTCG
50632143 TCAATCGGCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.35, G:0.12, T:0.12
Consensus pattern (17 bp):
CCAAAACACAAACTTCG
Found at i:50632424 original size:28 final size:28
Alignment explanation
Indices: 50632391--50632445 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
50632381 TTACAACAAA
*
50632391 GGTACATGAACTAAAAGTGTAAATAAAT
1 GGTACAGGAACTAAAAGTGTAAATAAAT
*
50632419 GGTACAGGGACTAAAAGTGTAAATAAA
1 GGTACAGGAACTAAAAGTGTAAATAAA
50632446 CCTAAGATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.49, C:0.07, G:0.22, T:0.22
Consensus pattern (28 bp):
GGTACAGGAACTAAAAGTGTAAATAAAT
Found at i:50632585 original size:11 final size:11
Alignment explanation
Indices: 50632578--50632606 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
50632568 GAAAAAACTA
50632578 AGAGAAAACCT
1 AGAGAAAACCT
50632589 AGAGAAAACCT
1 AGAGAAAACCT
50632600 AGAGAAA
1 AGAGAAA
50632607 GTAAAGGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.59, C:0.14, G:0.21, T:0.07
Consensus pattern (11 bp):
AGAGAAAACCT
Found at i:50638047 original size:93 final size:93
Alignment explanation
Indices: 50637935--50638106 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50637925 CGCCCATAAG
* *
50637935 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50638000 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
50638028 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50638093 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50638107 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50638103 original size:46 final size:46
Alignment explanation
Indices: 50637928--50638103 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
50637918 TGTAACCCGC
* * *
50637928 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
50637974 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
50638024 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50638067 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50638104 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50645617 original size:93 final size:93
Alignment explanation
Indices: 50645505--50645676 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50645495 CGCCCATAAG
* *
50645505 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50645570 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
50645598 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50645663 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50645677 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50645673 original size:46 final size:46
Alignment explanation
Indices: 50645498--50645673 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
50645488 TGTAACCCGC
* * *
50645498 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
50645544 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
50645594 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50645637 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50645674 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50650866 original size:10 final size:10
Alignment explanation
Indices: 50650853--50650932 Score: 54
Period size: 10 Copynumber: 7.7 Consensus size: 10
50650843 CGGGTGGATT
*
50650853 AGCTCTTTTG
1 AGCTCTTTTC
*
50650863 AGCTTCTGTTC
1 AGC-TCTTTTC
*
50650874 AGCT-TTTATG
1 AGCTCTTT-TC
*
50650884 AGCTTCTGTTC
1 AGC-TCTTTTC
50650895 AGCTCTTTTC
1 AGCTCTTTTC
* *
50650905 AGCTTCTGTTA
1 AGC-TCTTTTC
*
50650916 AGCTCTTTTG
1 AGCTCTTTTC
50650926 AGCTCTT
1 AGCTCTT
50650933 GTTGGCGTGT
Statistics
Matches: 54, Mismatches: 11, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
9 2 0.04
10 29 0.54
11 21 0.39
12 2 0.04
ACGTcount: A:0.12, C:0.23, G:0.17, T:0.47
Consensus pattern (10 bp):
AGCTCTTTTC
Found at i:50650935 original size:21 final size:21
Alignment explanation
Indices: 50650853--50650929 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
50650843 CGGGTGGATT
50650853 AGCTCTTTTGAGCTTCTGTTC
1 AGCTCTTTTGAGCTTCTGTTC
50650874 AGCT-TTTATGAGCTTCTGTTC
1 AGCTCTTT-TGAGCTTCTGTTC
* *
50650895 AGCTCTTTTCAGCTTCTGTTA
1 AGCTCTTTTGAGCTTCTGTTC
50650916 AGCTCTTTTGAGCT
1 AGCTCTTTTGAGCT
50650930 CTTGTTGGCG
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
20 3 0.06
21 45 0.88
22 3 0.06
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (21 bp):
AGCTCTTTTGAGCTTCTGTTC
Found at i:50655793 original size:27 final size:27
Alignment explanation
Indices: 50655762--50655816 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
50655752 ACCTATAAGT
50655762 GTGATTGGTTGATAGAGGGTGACCAAA
1 GTGATTGGTTGATAGAGGGTGACCAAA
50655789 GTGATTGGTTGATAGAGGGTGACCAAA
1 GTGATTGGTTGATAGAGGGTGACCAAA
50655816 G
1 G
50655817 GCTTGGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.38, T:0.25
Consensus pattern (27 bp):
GTGATTGGTTGATAGAGGGTGACCAAA
Found at i:50655829 original size:26 final size:27
Alignment explanation
Indices: 50655773--50655829 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
50655763 TGATTGGTTG
***
50655773 ATAGAGGGTGACCAAAGTGATTGGTTG
1 ATAGAGGGTGACCAAAGTGATTGGAAA
*
50655800 ATAGAGGGTGACCAAAG-GCTTGGAAA
1 ATAGAGGGTGACCAAAGTGATTGGAAA
50655826 ATAG
1 ATAG
50655830 CCCTATAAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (27 bp):
ATAGAGGGTGACCAAAGTGATTGGAAA
Found at i:50658929 original size:20 final size:20
Alignment explanation
Indices: 50658901--50658954 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 20
50658891 TTCCAATTTC
50658901 TTTTTCTCTCATTTCTTTT-
1 TTTTTCTCTCATTTCTTTTA
50658920 TTTCTTCTCTCAATTTCTTTTA
1 TTT-TTCTCTC-ATTTCTTTTA
50658942 TTTTTCTCTCATT
1 TTTTTCTCTCATT
50658955 ATCAACTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.09
20 10 0.31
21 16 0.50
22 3 0.09
ACGTcount: A:0.09, C:0.22, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTCTCTCATTTCTTTTA
Found at i:50660363 original size:43 final size:43
Alignment explanation
Indices: 50660298--50660451 Score: 229
Period size: 43 Copynumber: 3.6 Consensus size: 43
50660288 CGGCATTACA
50660298 CCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAG
* *
50660341 CCTGCTAGGCACGAAGGACCGAATACACATCA-TCGGCACAAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACT-GGCACGAAG
* * **
50660384 CCTGCTGGGCACAAAGGCCCGAATACACATCACCAGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAG
*
50660427 CCTGCTAGGCACGAAGGCTCGAATA
1 CCTGCTAGGCACGAAGGCCCGAATA
50660452 TAATACCAGC
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
42 1 0.01
43 97 0.99
ACGTcount: A:0.32, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAG
Found at i:50660552 original size:75 final size:76
Alignment explanation
Indices: 50660449--50660642 Score: 309
Period size: 75 Copynumber: 2.6 Consensus size: 76
50660439 GAAGGCTCGA
* * * *
50660449 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACCAACACGAAGCCTGTGGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAACACGAAGCCTGCGGG
*
50660514 ATTTAACCTGG
66 ATTTAACCCGG
* *
50660525 ATATATTA-CAGTACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAACACGAAGCCTGCGGG
50660589 ATTTAACCCGG
66 ATTTAACCCGG
*
50660600 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGGATATA
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
50660643 ATTCCAGCAT
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
75 69 0.64
76 39 0.36
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (76 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAACACGAAGCCTGCGGG
ATTTAACCCGG
Found at i:50660659 original size:38 final size:38
Alignment explanation
Indices: 50660449--50660651 Score: 311
Period size: 38 Copynumber: 5.4 Consensus size: 38
50660439 GAAGGCTCGA
* * *
50660449 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
50660487 ATATATTACCAACACGAAGCCTGTGGGATTTAACCTGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
50660525 ATATATTA-CAGTACGAAGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
50660562 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
50660600 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
50660638 ATATAATT-CCAGCA
1 ATAT-ATTACCAGCA
50660652 TATAGCCTAC
Statistics
Matches: 151, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
37 33 0.22
38 115 0.76
39 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:50667735 original size:53 final size:51
Alignment explanation
Indices: 50667670--50667802 Score: 151
Period size: 50 Copynumber: 2.6 Consensus size: 51
50667660 ATGAACAAAT
* * *
50667670 GAGTTACTTAATGCGTGACTTGATTTAATGATGCAAACTTTAAACTAACATGG
1 GAGTTACATAATGCGTGACTTAATTTAATGATGCAAAC-TT-AACTAACATGA
* * * *
50667723 GAGTTACATAATGCATGTCATAATTT-ATTATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCGTGACTTAATTTAATGATGCAAACTTAACTAACATGA
* * *
50667773 GAGTTACATAATACGTGACTTTATTAAATG
1 GAGTTACATAATGCGTGACTTAATTTAATG
50667803 CAGAACAGAT
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
50 30 0.46
51 4 0.06
52 10 0.15
53 21 0.32
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (51 bp):
GAGTTACATAATGCGTGACTTAATTTAATGATGCAAACTTAACTAACATGA
Found at i:50668246 original size:22 final size:21
Alignment explanation
Indices: 50668203--50668248 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
50668193 GAATTTGCCA
50668203 TTTCTTTCTTAATTTAGTACTT
1 TTTCTTTCTTAATTTAG-ACTT
50668225 TTTCTATTCTTAATCTTA-ACTT
1 TTTCT-TTCTTAAT-TTAGACTT
50668247 TT
1 TT
50668249 ATCATTGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 11 0.50
23 8 0.36
24 3 0.14
ACGTcount: A:0.20, C:0.15, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTCTTTCTTAATTTAGACTT
Found at i:50668498 original size:58 final size:57
Alignment explanation
Indices: 50668436--50668645 Score: 217
Period size: 58 Copynumber: 3.6 Consensus size: 57
50668426 AGATAGACAA
* * * *
50668436 AAAGGCATCCTTTTAGCAGGGATCGCCACAAAGGCTTTCTTATAACAGAGATCACTAC
1 AAAGGC-TCCTTTTAACAGAGATAGCCACAAAGGCTTTCTTATAACAGAGATCACCAC
* * *
50668494 AAAGGCTTTCTTATAACAGAGATAGCCACAAAGGCTTTCTTATAACAGAGATCGCCAC
1 AAAGGC-TCCTTTTAACAGAGATAGCCACAAAGGCTTTCTTATAACAGAGATCACCAC
* * * ** *
50668552 AAAGGCTCACTTTTAACTGAGATAACCAAAAAGGCTCACTTTTAACTA-AGAT-AGCCAC
1 AAAGGCTC-CTTTTAACAGAGATAGCCACAAAGGCTTTCTTATAAC-AGAGATCA-CCAC
* *
50668610 AAAGGCTCACTTTTAACTGAGATAGCCATAAAGGCT
1 AAAGGCTC-CTTTTAACAGAGATAGCCACAAAGGCT
50668646 CACTTTTAAC
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
57 1 0.01
58 128 0.98
59 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.24
Consensus pattern (57 bp):
AAAGGCTCCTTTTAACAGAGATAGCCACAAAGGCTTTCTTATAACAGAGATCACCAC
Found at i:50668574 original size:87 final size:86
Alignment explanation
Indices: 50668420--50668662 Score: 252
Period size: 87 Copynumber: 2.8 Consensus size: 86
50668410 GACATTCCTT
* * * * * * ** * *
50668420 TAACAAAGATAGACAAAAAGGCATCCTTTTAGCAGGGATCGCCACAAAGGCTTTCTTATAACAGA
1 TAAC-AAGATAGCCACAAAGGCTTACTTTTAACAGAGATCGCCACAAAGGCTCACTTTTAACTGA
* * * **
50668485 GATCACTACAAAGGCTTTCTTA
65 GATAACCAAAAAGGCTCACTTA
* *
50668507 TAACAGAGATAGCCACAAAGGCTTTCTTATAACAGAGATCGCCACAAAGGCTCACTTTTAACTGA
1 TAACA-AGATAGCCACAAAGGCTTACTTTTAACAGAGATCGCCACAAAGGCTCACTTTTAACTGA
*
50668572 GATAACCAAAAAGGCTCACTTT
65 GATAACCAAAAAGGCTCACTTA
* * * * *
50668594 TAACTAAGATAGCCACAAAGGCTCACTTTTAACTGAGATAGCCATAAAGGCTCACTTTTAACTAA
1 TAAC-AAGATAGCCACAAAGGCTTACTTTTAACAGAGATCGCCACAAAGGCTCACTTTTAACTGA
50668659 GATA
65 GATA
50668663 GCCATAAATG
Statistics
Matches: 130, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
86 1 0.01
87 128 0.98
88 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.24
Consensus pattern (86 bp):
TAACAAGATAGCCACAAAGGCTTACTTTTAACAGAGATCGCCACAAAGGCTCACTTTTAACTGAG
ATAACCAAAAAGGCTCACTTA
Found at i:50668646 original size:29 final size:29
Alignment explanation
Indices: 50668460--50668666 Score: 227
Period size: 29 Copynumber: 7.1 Consensus size: 29
50668450 AGCAGGGATC
** * *
50668460 GCCACAAAGGCTTTCTTATAACAGAGATCA
1 GCCACAAAGGCTCACTTTTAACTGAGAT-A
* ** * *
50668490 -CTACAAAGGCTTTCTTATAACAGAGATA
1 GCCACAAAGGCTCACTTTTAACTGAGATA
** * * *
50668518 GCCACAAAGGCTTTCTTATAACAGAGATC
1 GCCACAAAGGCTCACTTTTAACTGAGATA
50668547 GCCACAAAGGCTCACTTTTAACTGAGATA
1 GCCACAAAGGCTCACTTTTAACTGAGATA
* * *
50668576 ACCAAAAAGGCTCACTTTTAACTAAGATA
1 GCCACAAAGGCTCACTTTTAACTGAGATA
50668605 GCCACAAAGGCTCACTTTTAACTGAGATA
1 GCCACAAAGGCTCACTTTTAACTGAGATA
* *
50668634 GCCATAAAGGCTCACTTTTAACTAAGATA
1 GCCACAAAGGCTCACTTTTAACTGAGATA
50668663 GCCA
1 GCCA
50668667 TAAATGTGTC
Statistics
Matches: 160, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
28 1 0.01
29 159 0.99
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (29 bp):
GCCACAAAGGCTCACTTTTAACTGAGATA
Done.