Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 166 of 410
Found at i:50668730 original size:26 final size:26
Alignment explanation
Indices: 50668658--50668732 Score: 96
Period size: 26 Copynumber: 2.9 Consensus size: 26
50668648 CTTTTAACTA
*
50668658 AGATAGCCATAAATGTGTCCTTTCAG
1 AGATAGCCATAAAGGTGTCCTTTCAG
* * **
50668684 AGATGGCCACAAAGGCATCCTTTCAG
1 AGATAGCCATAAAGGTGTCCTTTCAG
*
50668710 AGATAGCGATAAAGGTGTCCTTT
1 AGATAGCCATAAAGGTGTCCTTT
50668733 TATGGAAATT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
AGATAGCCATAAAGGTGTCCTTTCAG
Found at i:50672190 original size:39 final size:39
Alignment explanation
Indices: 50672136--50672218 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
50672126 TGTGTGAGAT
*
50672136 TTATATCTGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
*
50672175 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
50672214 TTATA
1 TTATA
50672219 AGGCATTTGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (39 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:50672224 original size:22 final size:22
Alignment explanation
Indices: 50672196--50672240 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
50672186 TTAAGTCCCG
*
50672196 AAGGCATTCGTGCTGGTATTAT
1 AAGGCATTCGTGCTGATATTAT
*
50672218 AAGGCATTTGTGCTGATATTAT
1 AAGGCATTCGTGCTGATATTAT
50672240 A
1 A
50672241 TCCGGGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (22 bp):
AAGGCATTCGTGCTGATATTAT
Found at i:50672252 original size:61 final size:61
Alignment explanation
Indices: 50672157--50672271 Score: 194
Period size: 61 Copynumber: 1.9 Consensus size: 61
50672147 TTAAGTCCCG
*
50672157 AAGGCATTCGTGCTGATATTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTATTAT
1 AAGGCATTCGTGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTAT
* * *
50672218 AAGGCATTTGTGCTGATATTATATCCGGGCTAAGTTCCGAAGGCATTTGTGCTG
1 AAGGCATTCGTGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG
50672272 ATGTTATATC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (61 bp):
AAGGCATTCGTGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTAT
Found at i:50672272 original size:39 final size:39
Alignment explanation
Indices: 50672218--50672305 Score: 158
Period size: 39 Copynumber: 2.3 Consensus size: 39
50672208 CTGGTATTAT
*
50672218 AAGGCATTTGTGCTGATATTATATCCGGGCTAAGTTCCG
1 AAGGCATTTGTGCTGATATTATATCCGGGCTAAGTTCCA
*
50672257 AAGGCATTTGTGCTGATGTTATATCCGGGCTAAGTTCCA
1 AAGGCATTTGTGCTGATATTATATCCGGGCTAAGTTCCA
50672296 AAGGCATTTG
1 AAGGCATTTG
50672306 GGTTGGAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (39 bp):
AAGGCATTTGTGCTGATATTATATCCGGGCTAAGTTCCA
Found at i:50680171 original size:37 final size:39
Alignment explanation
Indices: 50680122--50680340 Score: 253
Period size: 37 Copynumber: 5.8 Consensus size: 39
50680112 GATATTTGAG
* * * *
50680122 GATTT-TAACCGGGCTAAGACCGCAGGCCTT-GTG-TGA
1 GATTTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGA
50680158 GATTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGA
1 GATTTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGA
* *
50680198 TA-TTATATCCGGGTTAAGTCC-AAGGCATTCGTGCTG-
1 GATTTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGA
50680234 G-TATTATAT-CGGGCTAAGTCCGAAGGCATTCGTGCTGA
1 GAT-TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGA
* *
50680272 TA-TTATATCCGGGCTAAGTCCCAAGGCATTCGTGCT--
1 GATTTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGA
50680308 GATGTTATATCCGGGCTAAGTTCCGAAGGCATT
1 GAT-TTATATCCGGGCTAAG-TCCGAAGGCATT
50680341 TGGGTTGGAA
Statistics
Matches: 158, Mismatches: 12, Indels: 23
0.82 0.06 0.12
Matches are distributed among these distances:
36 17 0.11
37 54 0.34
38 53 0.34
39 30 0.19
40 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (39 bp):
GATTTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGA
Found at i:50680298 original size:38 final size:38
Alignment explanation
Indices: 50680161--50680340 Score: 283
Period size: 37 Copynumber: 4.7 Consensus size: 38
50680151 TGTGTGAGAT
50680161 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCC-AAGGCATTCGTGCTGATA
* *
50680200 TTATATCCGGGTTAAGT-CCAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCAAGGCATTCGTGCTGATA
*
50680237 TTATAT-CGGGCTAAGTCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCAAGGCATTCGTGCTGATA
*
50680274 TTATATCCGGGCTAAGTCCCAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCAAGGCATTCGTGCTGATA
*
50680312 TTATATCCGGGCTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAG-TCCCAAGGCATT
50680341 TGGGTTGGAA
Statistics
Matches: 130, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
36 9 0.07
37 47 0.36
38 47 0.36
39 27 0.21
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (38 bp):
TTATATCCGGGCTAAGTCCCAAGGCATTCGTGCTGATA
Found at i:50680328 original size:112 final size:114
Alignment explanation
Indices: 50680131--50680340 Score: 320
Period size: 112 Copynumber: 1.9 Consensus size: 114
50680121 GGATTTTAAC
* *
50680131 CGGGCTAAGACCGCAGGCCTTGTGTGAGATTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCT
1 CGGGCTAAGACCGAAGGCATTGTGTGAGATTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCT
*
50680196 GATATTATATCCGGGTTAAG-TCC-AAGGCATTCGTGCTGGTATTATAT
66 GATATTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTATTATAT
* *
50680243 CGGGCTAAGTCCGAAGGCATTCGTGCTGATA-TTATATCCGGGCTAAGTCCC-AAGGCATTCGTG
1 CGGGCTAAGACCGAAGGCATT-GTG-TGAGATTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
*
50680306 CTGATGTTATATCCGGGCTAAGTTCCGAAGGCATT
64 CTGATATTATATCCGGGCTAAGTTCCGAAGGCATT
50680341 TGGGTTGGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
112 50 0.57
113 26 0.30
114 12 0.14
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (114 bp):
CGGGCTAAGACCGAAGGCATTGTGTGAGATTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCT
GATATTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTATTATAT
Found at i:50684288 original size:22 final size:23
Alignment explanation
Indices: 50684215--50684319 Score: 99
Period size: 23 Copynumber: 4.6 Consensus size: 23
50684205 TTTGCTCGTA
* * *
50684215 AGAGCTTACTATTTTCAACTCATT
1 AGAGCTTACT-GTTTCAGCTCAAT
* * *
50684239 GGAGCTTACCGTTTCAGCTC-CT
1 AGAGCTTACTGTTTCAGCTCAAT
50684261 ATGAGCTTACTG-TTCAGCTCAAT
1 A-GAGCTTACTGTTTCAGCTCAAT
50684284 AGAGCTTA-TCGTTTCAGCTCAAT
1 AGAGCTTACT-GTTTCAGCTCAAT
*
50684307 AGAGCTTATTGTT
1 AGAGCTTACTGTT
50684320 CATCCGCTCA
Statistics
Matches: 68, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
21 1 0.01
22 17 0.25
23 41 0.60
24 9 0.13
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:50686367 original size:79 final size:80
Alignment explanation
Indices: 50686264--50686486 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
50686254 GCTACTCGTT
* *
50686264 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
50686329 ATTT-GTAACTCGCA
66 ATTTAGTAACTCGCA
* *
50686343 CAAATGCCTTCGGGACTTAACCCGGATT-T-GTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCC
50686405 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
* * * * *
50686422 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCATAAA-GCCTTCGGGAC-TAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
50686484 GGA
64 GGA
50686487 CATCATTCGA
Statistics
Matches: 125, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
77 3 0.02
78 37 0.30
79 62 0.50
80 13 0.10
81 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATTTAGTAACTCGCA
Found at i:50686435 original size:40 final size:40
Alignment explanation
Indices: 50686264--50686486 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
50686254 GCTACTCGTT
*
50686264 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
50686304 CAAATGCCTTCGGGACTTAACCCGGATTT-GTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
50686343 CAAATGCCTTCGGGACTTAACCCGGATTT-GTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
50686382 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
50686422 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
50686463 TAAA-GCCTTCGGGAC-TAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50686487 CATCATTCGA
Statistics
Matches: 169, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
38 3 0.02
39 80 0.47
40 74 0.44
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50694344 original size:40 final size:39
Alignment explanation
Indices: 50694307--50694477 Score: 256
Period size: 39 Copynumber: 4.3 Consensus size: 39
50694297 GCTACTCGTT
* *
50694307 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-T-GTAACTCGCA
50694347 CAAATGCCTTCGGGACTTAACCCGGATTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTGTAACTCGCA
50694386 CAAATGCCTTCGGGACTTAACCCGGATTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTGTAACTCGCA
**
50694425 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTT-GTAACTCGCA
50694465 CAAATGCCTTCGG
1 CAAATGCCTTCGG
50694478 ATCTTAGTCC
Statistics
Matches: 123, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
38 3 0.02
39 72 0.59
40 45 0.37
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTGTAACTCGCA
Found at i:50694459 original size:79 final size:79
Alignment explanation
Indices: 50694307--50694477 Score: 258
Period size: 79 Copynumber: 2.2 Consensus size: 79
50694297 GCTACTCGTT
*
50694307 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
50694372 ATTTGTAACTCGCA
66 ATTTGTAACTCGCA
* **
50694386 CAAATGCCTTCGGGACTTAACCCGGATT-T-GTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
50694448 GGATTTAGTAACTCGCA
64 GGATTT-GTAACTCGCA
50694465 CAAATGCCTTCGG
1 CAAATGCCTTCGG
50694478 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
77 3 0.04
78 33 0.39
79 47 0.55
80 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTGTAACTCGCA
Found at i:50694478 original size:40 final size:40
Alignment explanation
Indices: 50694307--50694530 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
50694297 GCTACTCGTT
*
50694307 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
50694347 CAAATGCCTTCGGGACTTAACCCGGATTT-GTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
50694386 CAAATGCCTTCGGGACTTAACCCGGATTT-GTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
50694425 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
50694465 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
* *
50694506 TAAA-GCCTTCGGGACTCAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50694531 CATCATTCGA
Statistics
Matches: 169, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
38 3 0.02
39 72 0.43
40 82 0.49
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50699258 original size:20 final size:21
Alignment explanation
Indices: 50699225--50699265 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
50699215 TAGTCATAAA
*
50699225 AAATATTCAAAATTTTTCATC
1 AAATATTCAAAATTTTACATC
*
50699246 AAAT-TTCACAATTTTACATC
1 AAATATTCAAAATTTTACATC
50699266 TTAGTCCTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (21 bp):
AAATATTCAAAATTTTACATC
Found at i:50709150 original size:16 final size:16
Alignment explanation
Indices: 50709107--50709153 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
50709097 TATGATAATT
*
50709107 TTAAAGGTTAATTAAG
1 TTAAATGTTAATTAAG
* *
50709123 -TAATTTGATAATTAAG
1 TTAA-ATGTTAATTAAG
50709139 TTAAATGTTAATTAA
1 TTAAATGTTAATTAA
50709154 ACAAAAGATG
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
15 3 0.12
16 18 0.75
17 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.43
Consensus pattern (16 bp):
TTAAATGTTAATTAAG
Found at i:50709971 original size:40 final size:40
Alignment explanation
Indices: 50709916--50710012 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
50709906 TTATTGTATG
*
50709916 AATGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTA
1 AATGCACATATGTGCCCCTATTTGTACTTCAGTACCCCTA
* * *
50709956 AATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCCTG
1 AATGCACATATGTGCCCCTATTTGTACTTCAGTACCCCTA
* * *
50709996 AATACACTTTTGTGCCC
1 AATGCACATATGTGCCC
50710013 TGCTAAAACT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (40 bp):
AATGCACATATGTGCCCCTATTTGTACTTCAGTACCCCTA
Found at i:50718127 original size:99 final size:94
Alignment explanation
Indices: 50717959--50718314 Score: 274
Period size: 94 Copynumber: 3.8 Consensus size: 94
50717949 GTGTATAATG
* * **
50717959 CCATGTCCCAGACATGGTCTTACGCTGGCTCATC-CATCA-AGT--CGATGCCATGTCTTAGACA
1 CCATGTCCCAGACATGGTCTTACACTGGCTC-TCACAT-ATCGTGCCGATGCCATGTCCCAGACA
50718020 TGGTCTTACACTGACTATCGAAATCG-AGGCCGACT
64 TGGTCTTACACTGAC-A-C-AAATCGTA-GCCGA-T
*
50718055 CCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCGATGCCATGTCCCAGACAT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATC-GTGCCGATGCCATGTCCCAGACAT
**
50718120 GGTCTTACACTGACACATCTCGTAGCCGAT
65 GGTCTTACACTGACACAAATCGTAGCCGAT
* * * * *
50718150 GCATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATCTCGAGGCTGATG-CATGTCCCAAACAT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCG-TGCCGATGCCATGTCCCAGACAT
* * ** *
50718211 -GTCTTACACTAGGTCTCATCTC-AATGCCGAT
65 GGTCTTACACT--GACACAAATCGTA-GCCGAT
* * * * *
50718242 GCTATGTCCCAAACATGGTCTTACACTGGCTCTTATAATAT-G-GCTGATG-CATGTCCCAGACA
1 -CCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CATATCGTGCCGATGCCATGTCCCAGACA
*
50718304 T-GTCTTGCACT
64 TGGTCTTACACT
50718315 AGCACACACA
Statistics
Matches: 222, Mismatches: 23, Indels: 32
0.80 0.08 0.12
Matches are distributed among these distances:
90 10 0.05
91 15 0.07
92 26 0.12
93 13 0.06
94 56 0.25
95 19 0.09
96 43 0.19
97 7 0.03
98 1 0.00
99 32 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCGTGCCGATGCCATGTCCCAGACATG
GTCTTACACTGACACAAATCGTAGCCGAT
Found at i:50718184 original size:46 final size:46
Alignment explanation
Indices: 50717960--50718314 Score: 257
Period size: 46 Copynumber: 7.5 Consensus size: 46
50717950 TGTATAATGC
* * *
50717960 CATGTCCCAGACATGGTCTTACGCTGGC-T-CATCCATCAAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGAGCCGATG
** * ** *
50718006 CCATGTCTTAGACATGGTCTTACACTGAC-TATCGAAATCGAGGCCGACTC
1 -CATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCGA-GCCGA-TG
* * *
50718056 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTC-GAGCCGATG
*
50718105 CCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AGCCGATG
*
50718151 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GCCGATG
* *
50718197 CATGTCCCAAACAT-GTCTTACACTAGG-TCT-CATCTCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACT-GGCT-TACATCTCGA-GCCGATG
* * * *
50718243 CTATGTCCCAAACATGGTCTTACACTGGCTCTTATAATAT-G-GCTGATG
1 C-ATGTCCCAGACATGGTCTTACACTGG--CTTA-CATCTCGAGCCGATG
*
50718291 CATGTCCCAGACAT-GTCTTGCACT
1 CATGTCCCAGACATGGTCTTACACT
50718315 AGCACACACA
Statistics
Matches: 253, Mismatches: 32, Indels: 47
0.76 0.10 0.14
Matches are distributed among these distances:
44 12 0.05
45 16 0.06
46 74 0.29
47 55 0.22
48 20 0.08
49 31 0.12
50 38 0.15
51 6 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGCCGATG
Found at i:50718267 original size:94 final size:94
Alignment explanation
Indices: 50718056--50718322 Score: 291
Period size: 94 Copynumber: 2.9 Consensus size: 94
50718046 AGGCCGACTC
* * *
50718056 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTG-TGCCGATGCCATGTCCCAGACAT
1 CATGTCCCAGACATGGTCTTACACTGGCTCT-ACATATC-GAGGCTGATG-CATGTCCCAGACAT
*
50718120 GGTCTTACACT--GACACATCTCGTAGCCGATG
63 -GTCTTACACTAGGACACATCTCATAGCCGATG
* *
50718151 CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCTGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCTGATGCATGTCCCAGACATGTC
* *
50718214 TTACACTAGGTCTCATCTCA-ATGCCGATG
66 TTACACTAGGACACATCTCATA-GCCGATG
* *
50718243 CTATGTCCCAAACATGGTCTTACACTGGCTCT-TATAAT--ATGGCTGATGCATGTCCCAGACAT
1 C-ATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATCGA-GGCTGATGCATGTCCCAGACAT
* *
50718305 GTCTTGCACTAGCACACA
63 GTCTTACACTAGGACACA
50718323 CACATCGCCC
Statistics
Matches: 147, Mismatches: 16, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
90 10 0.07
91 15 0.10
92 28 0.19
93 14 0.10
94 64 0.44
95 16 0.11
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCTGATGCATGTCCCAGACATGTC
TTACACTAGGACACATCTCATAGCCGATG
Found at i:50718302 original size:140 final size:140
Alignment explanation
Indices: 50717956--50718314 Score: 348
Period size: 138 Copynumber: 2.5 Consensus size: 140
50717946 ATAGTGTATA
* * * * * * **
50717956 ATGCCATGTCCCAGACATGGTCTTACGCTGGCTCATCCATCA-AGTCGATGCCATGTCTTAGACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGACACAT--ATAATAGCCGATG-CATGTCCCAGACA
* ** * * *
50718020 TGGTCTTACACTGAC-TATCGAAATCGAGGCCGACTCCATGTCCCAGACATGGTCTTACACTAGC
63 T-GTCTTACACTGGCTTA-C-ATCTCGAGGCTGA-TGCATGTCCCAAACATGGTCTTACACTAGC
**
50718084 TCTCACATATCTGTGCCG
124 TCT-ACATATCAATGCCG
* * **
50718102 ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGACATGT
1 ATGCCATGTCCCAAACATGGTCTTACACTGACACATATAATAGCCGATGCATGTCCCAGACATGT
*
50718167 CTTACACTGGCTTACATCTCGAGGCTGATGCATGTCCCAAACAT-GTCTTACACTAGGTCT-CAT
66 CTTACACTGGCTTACATCTCGAGGCTGATGCATGTCCCAAACATGGTCTTACACTAGCTCTACAT
*
50718230 CTCAATGCCG
131 ATCAATGCCG
* * * * *
50718240 ATGCTATGTCCCAAACATGGTCTTACACTGGCTCTTATAATATGGCTGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAAACATGGTCTTACACTGACACATATAATA--GCCGATGCATGTCCCAGACAT
*
50718305 GTCTTGCACT
64 GTCTTACACT
50718315 AGCACACACA
Statistics
Matches: 181, Mismatches: 28, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
138 44 0.24
140 44 0.24
141 14 0.08
142 10 0.06
143 13 0.07
144 16 0.09
145 7 0.04
146 33 0.18
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (140 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGACACATATAATAGCCGATGCATGTCCCAGACATGT
CTTACACTGGCTTACATCTCGAGGCTGATGCATGTCCCAAACATGGTCTTACACTAGCTCTACAT
ATCAATGCCG
Found at i:50724615 original size:46 final size:45
Alignment explanation
Indices: 50724374--50724734 Score: 176
Period size: 46 Copynumber: 7.6 Consensus size: 45
50724364 TGTATAATGT
* * * *
50724374 CGATGCCATGTCCCAAACATGGTCTTACGCTGGC-TCATCCATC-AAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCAT--ATCGAGGC
* * * * * *
50724421 CGATGCCATGTCCTAGACATGGTCTTATACTGACTATTGAAATTGAGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGC--TTCATATCGAGGC
* * *
50724470 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTG-TGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T--CATATC-GAGGC
* * * * * * * *
50724520 CGATGCCATGTCCTAGAGATGGACTTACATTGAC-ACATTTCGTA-AC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATATCG-AGGC
50724566 CGATGCATGTCCCAGACATGTCTTACACTGGCTTGCATATCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATATCGAGGC
* * * * * * *
50724612 CGATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCT-TCATATCGAGGC
* * *
50724658 TGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-ATCGAGGC
* *
50724706 CGATGCATGTCCTAGACATGCCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
50724735 AGCACACACA
Statistics
Matches: 239, Mismatches: 58, Indels: 35
0.72 0.17 0.11
Matches are distributed among these distances:
44 10 0.04
45 14 0.06
46 67 0.28
47 58 0.24
48 23 0.10
49 32 0.13
50 34 0.14
51 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTCATATCGAGGC
Found at i:50729925 original size:21 final size:20
Alignment explanation
Indices: 50729897--50729936 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
50729887 CAAAACTTGT
*
50729897 ATAACTATCGTCAAACATTC
1 ATAACTATCATCAAACATTC
*
50729917 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
50729937 AAAGCTCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:50732317 original size:48 final size:48
Alignment explanation
Indices: 50732246--50732342 Score: 142
Period size: 48 Copynumber: 2.0 Consensus size: 48
50732236 ATTCCAAAAA
*
50732246 TAATATTATTTTAATAGTTTAATATTAAATTTAATTTAATACTTATCT
1 TAATAGTATTTTAATAGTTTAATATTAAATTTAATTTAATACTTATCT
* **
50732294 TAATAGTATTTTATTAAG-TTAATATTAAATTTAATTTAATGTTTATCT
1 TAATAGTATTTTAAT-AGTTTAATATTAAATTTAATTTAATACTTATCT
50732342 T
1 T
50732343 GTAAATAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
48 42 0.95
49 2 0.05
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (48 bp):
TAATAGTATTTTAATAGTTTAATATTAAATTTAATTTAATACTTATCT
Found at i:50732422 original size:56 final size:58
Alignment explanation
Indices: 50732312--50732424 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 58
50732302 TTTTATTAAG
* * *
50732312 TTAATATTAAATTTAATTTAATGTTTATCTTGTAAATAAAATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAA-TTAATATTTATCTTGTAAAT--AATTATATTAGTTTAATAAGAT
50732373 TTAATATTAAATTTAA-T-ATATTTATCTTGATAAAT-ATTATATTAGTTTAATA
1 TTAATATTAAATTTAATTAATATTTATCTTG-TAAATAATTATATTAGTTTAATA
50732425 TTAAAGTGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
56 15 0.31
58 11 0.23
59 6 0.12
61 16 0.33
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (58 bp):
TTAATATTAAATTTAATTAATATTTATCTTGTAAATAATTATATTAGTTTAATAAGAT
Found at i:50732579 original size:23 final size:25
Alignment explanation
Indices: 50732531--50732578 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
50732521 AGTTGTAGAG
50732531 AGAAAATTCTTTGAAGAGATTATTTT
1 AGAAAATTCTTT-AAGAGATTATTTT
50732557 AGAAAATT-TTT-AGAGA-TATTTT
1 AGAAAATTCTTTAAGAGATTATTTT
50732579 TCTGATTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 5 0.23
25 3 0.14
26 8 0.36
ACGTcount: A:0.40, C:0.02, G:0.15, T:0.44
Consensus pattern (25 bp):
AGAAAATTCTTTAAGAGATTATTTT
Found at i:50734968 original size:8 final size:8
Alignment explanation
Indices: 50734946--50734981 Score: 63
Period size: 8 Copynumber: 4.4 Consensus size: 8
50734936 GTATATAGAA
50734946 ATTTTGTG
1 ATTTTGTG
50734954 TATTTTGTG
1 -ATTTTGTG
50734963 ATTTTGTG
1 ATTTTGTG
50734971 ATTTTGTG
1 ATTTTGTG
50734979 ATT
1 ATT
50734982 AAGGACTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.14, C:0.00, G:0.22, T:0.64
Consensus pattern (8 bp):
ATTTTGTG
Found at i:50735447 original size:42 final size:43
Alignment explanation
Indices: 50735387--50735487 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 43
50735377 ATATGTGTTA
* *
50735387 TCATGCAAGACCACGTCTGGAACATTGGCA-CCATATTTGATT
1 TCATGTAAGACCACGTCTGGAACAGTGGCATCCATATTTGATT
* * * ** *
50735429 TCATGTAAGACCATGTCTGGGATAGTGGCATTGATATTTGGTT
1 TCATGTAAGACCACGTCTGGAACAGTGGCATCCATATTTGATT
*
50735472 ACATGTAAGACCACGT
1 TCATGTAAGACCACGT
50735488 TTGGGACGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 25 0.52
43 23 0.48
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31
Consensus pattern (43 bp):
TCATGTAAGACCACGTCTGGAACAGTGGCATCCATATTTGATT
Found at i:50735501 original size:43 final size:43
Alignment explanation
Indices: 50735375--50735504 Score: 122
Period size: 43 Copynumber: 3.0 Consensus size: 43
50735365 ACATAGGATC
* * * *
50735375 TGATATGT-GTTATCATGCAAGACCACGTCTGGAACATTGGCA-
1 TGATATTTGGTTA-CATGTAAGACCACGTCTGGGACGTTGGCAT
** * * * *
50735417 CCATATTTGATTTCATGTAAGACCATGTCTGGGATAG-TGGCAT
1 TGATATTTGGTTACATGTAAGACCACGTCTGGGA-CGTTGGCAT
*
50735460 TGATATTTGGTTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 TGATATTTGGTTACATGTAAGACCACGTCTGGGACGTTGGCAT
50735503 TG
1 TG
50735505 TATGAGCTTT
Statistics
Matches: 67, Mismatches: 17, Indels: 7
0.74 0.19 0.08
Matches are distributed among these distances:
42 29 0.43
43 38 0.57
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TGATATTTGGTTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:50745124 original size:16 final size:16
Alignment explanation
Indices: 50745103--50745169 Score: 66
Period size: 16 Copynumber: 4.1 Consensus size: 16
50745093 ATTACTCTTG
50745103 TAAAATTTAAAATATA
1 TAAAATTTAAAATATA
*
50745119 TAAAATCTAAAATAT-
1 TAAAATTTAAAATATA
*
50745134 TAAAACTTTATAAATTTA
1 TAAAA-TTTA-AAATATA
50745152 TGAAAATATTAAAA-ATA
1 T-AAAAT-TTAAAATATA
50745169 T
1 T
50745170 TATTTCACAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
15 5 0.12
16 17 0.40
17 8 0.19
18 5 0.12
19 7 0.17
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.37
Consensus pattern (16 bp):
TAAAATTTAAAATATA
Found at i:50745328 original size:17 final size:17
Alignment explanation
Indices: 50745306--50745362 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
50745296 AAATTATAAA
50745306 TTATAAACTTTGATATT
1 TTATAAACTTTGATATT
* *
50745323 TTATAAAATCTGATATT
1 TTATAAACTTTGATATT
* *
50745340 TTAT-ACCTTTTATATT
1 TTATAAACTTTGATATT
50745356 TTATAAA
1 TTATAAA
50745363 AATTATATCT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
16 12 0.38
17 20 0.62
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.53
Consensus pattern (17 bp):
TTATAAACTTTGATATT
Found at i:50746016 original size:14 final size:14
Alignment explanation
Indices: 50745996--50746034 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
50745986 CTGTTTGAAT
*
50745996 GAAAATGGCTTCTG
1 GAAAATGACTTCTG
* *
50746010 TAAAATGATTTCTG
1 GAAAATGACTTCTG
50746024 GAAAATGACTT
1 GAAAATGACTT
50746035 ACTTTTCTAG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (14 bp):
GAAAATGACTTCTG
Found at i:50755618 original size:28 final size:28
Alignment explanation
Indices: 50755574--50755664 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
50755564 AAATTAACGG
*
50755574 CCATATTGCT-ACAGTCAGACTCCAATGA
1 CCATATTG-TAACAGTCAGATTCCAATGA
* * *
50755602 TCATATTGTAACGGTCAGATTCCAACGA
1 CCATATTGTAACAGTCAGATTCCAATGA
*
50755630 CCATATTGTAACAATCAGATTCCAATGA
1 CCATATTGTAACAGTCAGATTCCAATGA
50755658 CCATATT
1 CCATATT
50755665 TTTGCATTAC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
27 1 0.02
28 53 0.98
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (28 bp):
CCATATTGTAACAGTCAGATTCCAATGA
Found at i:50761748 original size:40 final size:40
Alignment explanation
Indices: 50761523--50761748 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
50761513 TCGAATGATG
* * * * *
50761523 TCCGGGCTGAGTCCCGAAGGC-TTTATGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
50761563 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50761603 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50761643 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50761683 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50761724 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50761749 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 160 0.94
41 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50764185 original size:28 final size:28
Alignment explanation
Indices: 50764154--50764219 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
50764144 TTTATCTTGG
*
50764154 TGGACTTATCTTGTGTTTATTGTCCCGA
1 TGGACTTATCTTGTGTTTACTGTCCCGA
* *
50764182 TGGACTCTATC-TGTGTTTACTGTCCTGG
1 TGGACT-TATCTTGTGTTTACTGTCCCGA
50764210 TGGAC-TATCT
1 TGGACTTATCT
50764220 ATTCTATGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
26 4 0.12
28 25 0.76
29 4 0.12
ACGTcount: A:0.14, C:0.20, G:0.23, T:0.44
Consensus pattern (28 bp):
TGGACTTATCTTGTGTTTACTGTCCCGA
Found at i:50764264 original size:33 final size:33
Alignment explanation
Indices: 50764221--50764300 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
50764211 GGACTATCTA
* * * *
50764221 TTCTATGTTTACTATCCCAGCAAATTATCTGTG
1 TTCTGTGTTTACTATCCCAACAAACTATCTCTG
* *
50764254 TTCTGTGTTTACTATCCCAACGAACTATCTCTT
1 TTCTGTGTTTACTATCCCAACAAACTATCTCTG
*
50764287 TTTTGTGTTTACTA
1 TTCTGTGTTTACTA
50764301 CTCCTACGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.46
Consensus pattern (33 bp):
TTCTGTGTTTACTATCCCAACAAACTATCTCTG
Found at i:50764323 original size:18 final size:18
Alignment explanation
Indices: 50764296--50764332 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
50764286 TTTTTGTGTT
50764296 TACTACTCCTACGAACTA
1 TACTACTCCTACGAACTA
* *
50764314 TACTATTCCTATGAACTA
1 TACTACTCCTACGAACTA
50764332 T
1 T
50764333 CTCTGTGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (18 bp):
TACTACTCCTACGAACTA
Found at i:50765122 original size:43 final size:43
Alignment explanation
Indices: 50765074--50765160 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
50765064 TGCCAGAACT
50765074 TCCATTCTCCTGGAAGCTAAGAATTTACCTAGAAATCTAAAAA
1 TCCATTCTCCTGGAAGCTAAGAATTTACCTAGAAATCTAAAAA
50765117 TCCATTCTCCTGGAAGCTAAGAATTTACCTAGAAATCTAAAAA
1 TCCATTCTCCTGGAAGCTAAGAATTTACCTAGAAATCTAAAAA
50765160 T
1 T
50765161 TAGACTTACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (43 bp):
TCCATTCTCCTGGAAGCTAAGAATTTACCTAGAAATCTAAAAA
Found at i:50765161 original size:20 final size:20
Alignment explanation
Indices: 50765090--50765161 Score: 56
Period size: 20 Copynumber: 3.5 Consensus size: 20
50765080 CTCCTGGAAG
*
50765090 CTAAGAATTTACCTAGAAAT
1 CTAAAAATTTACCTAGAAAT
* * *
50765110 CTAAAAATCCATTCTCCT-GGAAG
1 CTAAAAAT---TT-ACCTAGAAAT
*
50765133 CTAAGAATTTACCTAGAAAT
1 CTAAAAATTTACCTAGAAAT
50765153 CTAAAAATT
1 CTAAAAATT
50765162 AGACTTACAT
Statistics
Matches: 38, Mismatches: 9, Indels: 10
0.67 0.16 0.18
Matches are distributed among these distances:
19 3 0.08
20 20 0.53
23 12 0.32
24 3 0.08
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29
Consensus pattern (20 bp):
CTAAAAATTTACCTAGAAAT
Found at i:50770219 original size:29 final size:29
Alignment explanation
Indices: 50770186--50770317 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
50770176 GTGACGAGAT
*
50770186 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
50770215 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
50770244 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
50770273 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
50770302 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
50770318 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:50778038 original size:29 final size:29
Alignment explanation
Indices: 50778005--50778136 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
50777995 GTGACGAGAT
*
50778005 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
50778034 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
50778063 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
50778092 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
50778121 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
50778137 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:50780707 original size:21 final size:22
Alignment explanation
Indices: 50780683--50780726 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
50780673 TTGCTTGTAC
50780683 TCAAGTACATTTT-GTT-GCATT
1 TCAAG-ACATTTTAGTTAGCATT
50780704 TCAAGACATTTTAGTTAGCATT
1 TCAAGACATTTTAGTTAGCATT
50780726 T
1 T
50780727 TTAATATTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 8 0.38
22 6 0.29
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (22 bp):
TCAAGACATTTTAGTTAGCATT
Found at i:50780944 original size:6 final size:6
Alignment explanation
Indices: 50780933--50780972 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
50780923 TTTATGCAAC
*
50780933 AATTCA AATTCA AATTTA GAAGTTCA AATTCA AATTCA AA
1 AATTCA AATTCA AATTCA -AA-TTCA AATTCA AATTCA AA
50780973 CTTGTACTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 23 0.77
7 4 0.13
8 3 0.10
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33
Consensus pattern (6 bp):
AATTCA
Found at i:50788702 original size:93 final size:93
Alignment explanation
Indices: 50788590--50788760 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
50788580 GCCCATAAGT
* *
50788590 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
50788655 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
50788683 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
50788748 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50788761 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50788757 original size:46 final size:46
Alignment explanation
Indices: 50788582--50788757 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
50788572 TGTAACCTGC
* * *
50788582 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
50788628 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * *
50788678 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
50788721 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50788758 TGCTCAACCA
Statistics
Matches: 113, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:50790166 original size:178 final size:178
Alignment explanation
Indices: 50789867--50790225 Score: 718
Period size: 178 Copynumber: 2.0 Consensus size: 178
50789857 GTTTTGCAAT
50789867 TTATTCAATTTAGTCCCAAATTTCAAATTAAGCATTTTATGCATAAAATTTCTTCACGAAATTTT
1 TTATTCAATTTAGTCCCAAATTTCAAATTAAGCATTTTATGCATAAAATTTCTTCACGAAATTTT
50789932 CACACAATCATGCAATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTCTATCTCAGA
66 CACACAATCATGCAATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTCTATCTCAGA
50789997 TTTTGTGGTCACGAAACCACTATTCCGACTAGGCCCAAAATCAGGATA
131 TTTTGTGGTCACGAAACCACTATTCCGACTAGGCCCAAAATCAGGATA
50790045 TTATTCAATTTAGTCCCAAATTTCAAATTAAGCATTTTATGCATAAAATTTCTTCACGAAATTTT
1 TTATTCAATTTAGTCCCAAATTTCAAATTAAGCATTTTATGCATAAAATTTCTTCACGAAATTTT
50790110 CACACAATCATGCAATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTCTATCTCAGA
66 CACACAATCATGCAATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTCTATCTCAGA
50790175 TTTTGTGGTCACGAAACCACTATTCCGACTAGGCCCAAAATCAGGATA
131 TTTTGTGGTCACGAAACCACTATTCCGACTAGGCCCAAAATCAGGATA
50790223 TTA
1 TTA
50790226 CAGGTCCTTA
Statistics
Matches: 181, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
178 181 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (178 bp):
TTATTCAATTTAGTCCCAAATTTCAAATTAAGCATTTTATGCATAAAATTTCTTCACGAAATTTT
CACACAATCATGCAATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTCTATCTCAGA
TTTTGTGGTCACGAAACCACTATTCCGACTAGGCCCAAAATCAGGATA
Found at i:50790537 original size:16 final size:16
Alignment explanation
Indices: 50790516--50790547 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
50790506 ATGAAGATGA
50790516 AAGCAAAAAATACATT
1 AAGCAAAAAATACATT
50790532 AAGCAAAAAATACATT
1 AAGCAAAAAATACATT
50790548 GGTATGCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (16 bp):
AAGCAAAAAATACATT
Found at i:50795171 original size:40 final size:40
Alignment explanation
Indices: 50795090--50795307 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
50795080 AAACCAAGTA
* * * * *
50795090 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAATTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
50795129 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50795169 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50795209 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
50795249 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAACG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50795289 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50795308 TTATCATCCG
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 150 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50799009 original size:22 final size:22
Alignment explanation
Indices: 50798976--50799017 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
50798966 TAACATGTGT
50798976 CACATATATCATGAGCTCAGGC
1 CACATATATCATGAGCTCAGGC
50798998 CACATA-ACTCATGAGCTCAG
1 CACATATA-TCATGAGCTCAG
50799018 ATCGCATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (22 bp):
CACATATATCATGAGCTCAGGC
Found at i:50799310 original size:64 final size:64
Alignment explanation
Indices: 50799225--50799365 Score: 185
Period size: 64 Copynumber: 2.2 Consensus size: 64
50799215 CATTAATTAT
* * *
50799225 ATATGTACTTACCATATATGCAATATTAAAGCATTAAAAATATGA-TACATATTGCATAATTTGC
1 ATATGAACTTACCATACATGCAATATTAAAGCATTAAAAATA-GAGTACATATTGCATAACTTGC
* * * * *
50799289 ATATGAACTTACCATACATGCAATATTTAAGCGTTTAATATAGAGTACATATTGCATTACTTGC
1 ATATGAACTTACCATACATGCAATATTAAAGCATTAAAAATAGAGTACATATTGCATAACTTGC
*
50799353 ATACGAACTTACC
1 ATATGAACTTACC
50799366 TCGATACAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
63 2 0.03
64 65 0.97
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.35
Consensus pattern (64 bp):
ATATGAACTTACCATACATGCAATATTAAAGCATTAAAAATAGAGTACATATTGCATAACTTGC
Found at i:50806289 original size:64 final size:64
Alignment explanation
Indices: 50806184--50806391 Score: 181
Period size: 67 Copynumber: 3.2 Consensus size: 64
50806174 CATCATGCGT
*
50806184 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACAAG--A-TA-AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
50806249 TAG
62 TAG
** * * * * * *
50806252 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGCTTC-AGGTGAAGGACACCATG
1 ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATG
50806316 TAG
62 TAG
* * * *
50806319 ACAAGAGAGCTACAAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-G
1 ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG
50806381 TACAAGAGAGC
1 -ACAAGAGAGC
50806392 CGAACTCTAT
Statistics
Matches: 114, Mismatches: 19, Indels: 19
0.75 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 22 0.19
65 8 0.07
66 18 0.16
67 32 0.28
68 14 0.12
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:50810232 original size:2 final size:2
Alignment explanation
Indices: 50810225--50810249 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
50810215 ACATAACCGA
50810225 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
50810250 AATCAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50810658 original size:43 final size:42
Alignment explanation
Indices: 50810533--50810662 Score: 113
Period size: 43 Copynumber: 3.1 Consensus size: 42
50810523 TACATGCAAT
* * * *
50810533 CACAT-ATCAATAAATCGATGCCACTATCCCAGATAGGGTCTTA
1 CACATAATC-ATATATCGATGCCAC-GTCCCAGACATGGTCTTA
* * * * * *
50810576 CAC-GAATCAAATA-CGTTGCCGATGTCTCAGACATTGTCTTA
1 CACATAATCATATATCGATGCC-ACGTCCCAGACATGGTCTTA
50810617 CACATAATCATATATCGATGCCAACGTCCCAGACATGGTCTTA
1 CACATAATCATATATCGATGCC-ACGTCCCAGACATGGTCTTA
50810660 CAC
1 CAC
50810663 GAGAACACAT
Statistics
Matches: 66, Mismatches: 17, Indels: 8
0.73 0.19 0.09
Matches are distributed among these distances:
41 22 0.33
42 12 0.18
43 32 0.48
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
CACATAATCATATATCGATGCCACGTCCCAGACATGGTCTTA
Found at i:50810675 original size:43 final size:41
Alignment explanation
Indices: 50810546--50810677 Score: 106
Period size: 43 Copynumber: 3.1 Consensus size: 41
50810536 ATATCAATAA
* * * *
50810546 ATCGATGCCACTATCCCAGATAGGGTCTTACACGAATCAAAT
1 ATCGATGCCAC-GTCCCAGACATGGTCTTACACGAAACAAAT
* * * * *
50810588 A-CGTTGCCGATGTCTCAGACATTGTCTTACAC-ATAATCATAT
1 ATCGATGCC-ACGTCCCAGACATGGTCTTACACGA-AA-CAAAT
*
50810630 ATCGATGCCAACGTCCCAGACATGGTCTTACACGAGAACACAT
1 ATCGATGCC-ACGTCCCAGACATGGTCTTACACGA-AACAAAT
50810673 ATCGA
1 ATCGA
50810678 AATCCTATGT
Statistics
Matches: 69, Mismatches: 16, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
40 1 0.01
41 23 0.33
42 7 0.10
43 35 0.51
44 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (41 bp):
ATCGATGCCACGTCCCAGACATGGTCTTACACGAAACAAAT
Found at i:50818277 original size:205 final size:205
Alignment explanation
Indices: 50817925--50818337 Score: 772
Period size: 205 Copynumber: 2.0 Consensus size: 205
50817915 TTGAATCTTT
*
50817925 GATATAAGGTGTGAGATCTAAATCTTTGATTTGATTACAAAATTCTACTTTTATTTTTAATAAAA
1 GATATAAGGTGTGAGATCTAAATCTTTGATTTGATTACAAAATGCTACTTTTATTTTTAATAAAA
*
50817990 TGCTATTAAATAATTATTTGAGAGTACACTAAGTACTAAAACCAGAGTTGAAAATTTCATTATAG
66 TGCTATTAAATAATTATCTGAGAGTACACTAAGTACTAAAACCAGAGTTGAAAATTTCATTATAG
*
50818055 GAAAATTCCAAGTAAGTGTTCCTAAAATTATTAGTTTATGAAAACTATGATTTGTGATGTGCTGA
131 GAAAATTCCAAGTAAGTGTTCCTAAAATTATTAGTTCATGAAAACTATGATTTGTGATGTGCTGA
50818120 TGTATGTGAC
196 TGTATGTGAC
*
50818130 GATATAAGGTGTGAGATCTAAATCTTTGATTTGATTACAAAATGCTACTTTTATTTTTAATGAAA
1 GATATAAGGTGTGAGATCTAAATCTTTGATTTGATTACAAAATGCTACTTTTATTTTTAATAAAA
* *
50818195 TGCTATTAAATAATTATCTGAGAGTACACTAAGTACTCAAACCAGATTTGAAAATTTCATTATAG
66 TGCTATTAAATAATTATCTGAGAGTACACTAAGTACTAAAACCAGAGTTGAAAATTTCATTATAG
50818260 GAAAATTCCAAGTAAGTGTTCCTAAAATTATTAGTTCATGAAAACTATGATTTGTGATGTGCTGA
131 GAAAATTCCAAGTAAGTGTTCCTAAAATTATTAGTTCATGAAAACTATGATTTGTGATGTGCTGA
50818325 TGTATGTGAC
196 TGTATGTGAC
50818335 GAT
1 GAT
50818338 GACATGTGTG
Statistics
Matches: 202, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
205 202 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (205 bp):
GATATAAGGTGTGAGATCTAAATCTTTGATTTGATTACAAAATGCTACTTTTATTTTTAATAAAA
TGCTATTAAATAATTATCTGAGAGTACACTAAGTACTAAAACCAGAGTTGAAAATTTCATTATAG
GAAAATTCCAAGTAAGTGTTCCTAAAATTATTAGTTCATGAAAACTATGATTTGTGATGTGCTGA
TGTATGTGAC
Found at i:50820530 original size:14 final size:15
Alignment explanation
Indices: 50820511--50820550 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
50820501 TAATTTTGTA
50820511 ATTATAA-ATTTTAT
1 ATTATAATATTTTAT
*
50820525 ATTATAATATTTTAC
1 ATTATAATATTTTAT
50820540 A-TATAATATTT
1 ATTATAATATTT
50820551 AATTTTAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATAATATTTTAT
Found at i:50825689 original size:16 final size:15
Alignment explanation
Indices: 50825664--50825694 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
50825654 AATACTTAAG
50825664 TATATAATATAATAA
1 TATATAATATAATAA
50825679 TATATTAATATAATAA
1 TATA-TAATATAATAA
50825695 AACATAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TATATAATATAATAA
Found at i:50834732 original size:12 final size:12
Alignment explanation
Indices: 50834715--50834739 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50834705 GCTGTTTCAC
50834715 GGCCTAGCACAT
1 GGCCTAGCACAT
50834727 GGCCTAGCACAT
1 GGCCTAGCACAT
50834739 G
1 G
50834740 AGCGTGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.28, T:0.16
Consensus pattern (12 bp):
GGCCTAGCACAT
Found at i:50838016 original size:46 final size:46
Alignment explanation
Indices: 50837966--50838141 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
50837956 TGGTTGAGCA
50837966 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50838012 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
50838057 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
50838105 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50838142 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50838122 original size:93 final size:93
Alignment explanation
Indices: 50837963--50838133 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
50837953 GGATGGTTGA
* *
50837963 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50838028 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
50838056 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50838121 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50838134 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50840033 original size:29 final size:29
Alignment explanation
Indices: 50840001--50840136 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
50839991 ATACCCTTCG
** * *
50840001 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
50840030 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
50840059 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
50840088 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
50840117 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
50840137 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:50840128 original size:58 final size:58
Alignment explanation
Indices: 50839976--50840135 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
50839966 AATTTAAGCC
* *** * * ** * *
50839976 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
50840034 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
50840092 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
50840136 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:50841038 original size:143 final size:143
Alignment explanation
Indices: 50840780--50841076 Score: 576
Period size: 143 Copynumber: 2.1 Consensus size: 143
50840770 AAATTCTATA
50840780 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
*
50840845 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACCCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
*
50840910 AGGAAGACAACAT
131 AGGAAAACAACAT
50840923 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
50840988 TTTGTTAAACATTCGAACTCACCCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACCCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
50841053 AGGAAAACAACAT
131 AGGAAAACAACAT
50841066 GCATGGCCGAA
1 GCATGGCCGAA
50841077 ATTTAACTCA
Statistics
Matches: 152, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 152 1.00
ACGTcount: A:0.39, C:0.30, G:0.10, T:0.21
Consensus pattern (143 bp):
GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
TTTGTTAAACATTCGAACTCACCCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
AGGAAAACAACAT
Found at i:50847721 original size:24 final size:24
Alignment explanation
Indices: 50847694--50847749 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
50847684 ATAGTATATT
* *
50847694 TTGGTATGATTTATAGATG-ATGAA
1 TTGGTATGATTT-GAGAAGCATGAA
50847718 TTGGTATG-TTTGAGAAGCATGAA
1 TTGGTATGATTTGAGAAGCATGAA
50847741 TTGGT-TGAT
1 TTGGTATGAT
50847750 AGAAAGGTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 6 0.21
23 14 0.50
24 8 0.29
ACGTcount: A:0.29, C:0.02, G:0.29, T:0.41
Consensus pattern (24 bp):
TTGGTATGATTTGAGAAGCATGAA
Found at i:50863089 original size:59 final size:59
Alignment explanation
Indices: 50863016--50863129 Score: 192
Period size: 59 Copynumber: 1.9 Consensus size: 59
50863006 ATAGGATACA
*
50863016 AATGTCATGACATTAGGATTATGTGTGGTTTCGTGTAAAACCATATCTGGGATATAATC
1 AATGTCATGACATTAGGATTATGTGTGGTTTCGTATAAAACCATATCTGGGATATAATC
* * *
50863075 AATGTCATGGCATTAGGATTATGTGTGGTTTCGTATAAGACCATATTTGGGATAT
1 AATGTCATGACATTAGGATTATGTGTGGTTTCGTATAAAACCATATCTGGGATAT
50863130 GGCCTCGATA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.37
Consensus pattern (59 bp):
AATGTCATGACATTAGGATTATGTGTGGTTTCGTATAAAACCATATCTGGGATATAATC
Found at i:50863157 original size:42 final size:42
Alignment explanation
Indices: 50863110--50863309 Score: 177
Period size: 42 Copynumber: 4.6 Consensus size: 42
50863100 TGGTTTCGTA
* *
50863110 TAAGACCATATTTGGGATATGGCCTCGATATGTGATCCCATG
1 TAAGACCATATCTGGGATATGGCATCGATATGTGATCCCATG
* * ** *
50863152 TAAGACCATATTTGGGATATGGCATTGGCATCAATATGTGATTTCGTG
1 TAAGACCATATCTGGG--AT---A-TGGCATCGATATGTGATCCCATG
* * * * *
50863200 TAAGACCATCTCTGGGACATGGCATCGATATGAGA-CATCGTG
1 TAAGACCATATCTGGGATATGGCATCGATATGTGATC-CCATG
** * *
50863242 TAAGACCATAGATAGGATATTGGCATCGATATATGATCCCATG
1 TAAGACCATATCTGGGATA-TGGCATCGATATGTGATCCCATG
50863285 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
50863310 TGACATCTTA
Statistics
Matches: 126, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
42 55 0.44
43 34 0.27
44 3 0.02
46 1 0.01
47 1 0.01
48 32 0.25
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATGTGATCCCATG
Found at i:50863260 original size:90 final size:91
Alignment explanation
Indices: 50863098--50863267 Score: 209
Period size: 90 Copynumber: 1.9 Consensus size: 91
50863088 TAGGATTATG
* * * * * *
50863098 TGTGGTTTCGTATAAGACCATATTTGGGATATGGCCTCGATATGTGATCCCATGTAAGACCATAT
1 TGTGATTTCGTATAAGACCATATCTGGGACATGGCATCGATATGAGATCCCATGTAAGACCATAG
* *
50863163 TTGGGATA-TGGCATTGGCATCAATA
66 ATAGGATATTGGCATTGGCATCAATA
* * * *
50863188 TGTGATTTCGTGTAAGACCATCTCTGGGACATGGCATCGATATGAGA-CATCGTGTAAGACCATA
1 TGTGATTTCGTATAAGACCATATCTGGGACATGGCATCGATATGAGATC-CCATGTAAGACCATA
50863252 GATAGGATATTGGCAT
65 GATAGGATATTGGCAT
50863268 CGATATATGA
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
89 1 0.02
90 59 0.89
91 6 0.09
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (91 bp):
TGTGATTTCGTATAAGACCATATCTGGGACATGGCATCGATATGAGATCCCATGTAAGACCATAG
ATAGGATATTGGCATTGGCATCAATA
Found at i:50871969 original size:128 final size:128
Alignment explanation
Indices: 50871806--50872053 Score: 372
Period size: 128 Copynumber: 1.9 Consensus size: 128
50871796 TTATCAAACC
* * * *
50871806 GTTCTTTTAGACCTCGTCAGCCATCCATAGAAGATCCTTCTATGTTGGAATTGAAG-CTTTTGCC
1 GTTCTTTTAAACCTCCTCAGCCATCCATAGAAGATCCTCCTATGTTGGAATTAAAGTC-TTTGCC
* *
50871870 AACACATCTAAAGTATGCTTACTTGAGAGATAACAACATATTGCCATTAATTATTTATTGGACT
65 AACACATCTAAAGTATGCTTACTTGAGAGATAACAACACATTGCCAGTAATTATTTATTGGACT
** * **
50871934 GTTCTTTTAAACCTCCTTGGCCATCTATAGAAGATCCTCCTATGTTGGAATTAAAGTCTTTGTTA
1 GTTCTTTTAAACCTCCTCAGCCATCCATAGAAGATCCTCCTATGTTGGAATTAAAGTCTTTGCCA
*
50871999 ACACATCTAAAGTATGCTTACTTGGGAGATAACAACACATTGCCAGTAATTATTT
66 ACACATCTAAAGTATGCTTACTTGAGAGATAACAACACATTGCCAGTAATTATTT
50872054 TTGTGGCATT
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
128 106 0.99
129 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (128 bp):
GTTCTTTTAAACCTCCTCAGCCATCCATAGAAGATCCTCCTATGTTGGAATTAAAGTCTTTGCCA
ACACATCTAAAGTATGCTTACTTGAGAGATAACAACACATTGCCAGTAATTATTTATTGGACT
Found at i:50874979 original size:29 final size:29
Alignment explanation
Indices: 50874939--50874995 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
50874929 ATTACTAATT
50874939 TTTCTGTTATTTTTCTTTTCCTGCTCAAA
1 TTTCTGTTATTTTTCTTTTCCTGCTCAAA
50874968 TTTCTGTTATTTTTCTTTTCCTGCTCAA
1 TTTCTGTTATTTTTCTTTTCCTGCTCAA
50874996 TTTTTTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.12, C:0.21, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTCTGTTATTTTTCTTTTCCTGCTCAAA
Found at i:50875854 original size:48 final size:48
Alignment explanation
Indices: 50875798--50876218 Score: 662
Period size: 48 Copynumber: 8.8 Consensus size: 48
50875788 GTAAAAATAT
* *
50875798 TAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
* * *
50875846 GAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAGGGC
1 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
50875894 TAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
* *
50875942 TAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
* * *
50875990 GAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGC
1 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
50876038 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
50876086 TAATGTGAAATATCTATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
* * * **
50876134 TAATGTGAAATATATGTGTGATAGGTATATGTGGTACGGCCGAATGGC
1 TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
* *
50876182 GAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 TAATGTGAAATATATATGAGATATGTATATGTGGTAA
50876219 TGTAACACCC
Statistics
Matches: 341, Mismatches: 32, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 341 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
TAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
Found at i:50877697 original size:29 final size:29
Alignment explanation
Indices: 50877665--50877771 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
50877655 ATACCCTCCG
**
50877665 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATTTTTCC
* * * *
50877694 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATTTTTCC
* *
50877723 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCGTATTTTTCC
*
50877752 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
50877772 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATTTTTCC
Found at i:50879183 original size:19 final size:19
Alignment explanation
Indices: 50879159--50879196 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
50879149 TGACCACTTC
50879159 ATGGAAATTTACCACATAT
1 ATGGAAATTTACCACATAT
50879178 ATGGAAATTTACCACATAT
1 ATGGAAATTTACCACATAT
50879197 TGTATATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (19 bp):
ATGGAAATTTACCACATAT
Found at i:50885239 original size:29 final size:29
Alignment explanation
Indices: 50885207--50885341 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
50885197 ATACCCTCCG
** * *
50885207 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
50885236 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
50885265 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
50885294 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
50885323 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
50885342 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:50885274 original size:58 final size:58
Alignment explanation
Indices: 50885153--50885342 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
50885143 TACTCGATTT
* * * *** *
50885153 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
50885211 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
50885269 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
50885327 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
50885343 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:50891592 original size:38 final size:39
Alignment explanation
Indices: 50891487--50891726 Score: 290
Period size: 40 Copynumber: 6.1 Consensus size: 39
50891477 TCGAATGATG
* *
50891487 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATA
* *
50891527 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTGACTATA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
*
50891567 TCCGGACTAAGT-CGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
* *
50891604 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
* *
50891643 TCCGGGTTAAGTCCGAAGGCATTTATGCGAGTTACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
* * **
50891682 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CTATA
50891722 TCCGG
1 TCCGG
50891727 TTAAATTCCG
Statistics
Matches: 178, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
37 11 0.06
38 47 0.26
39 48 0.27
40 64 0.36
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:50897117 original size:48 final size:48
Alignment explanation
Indices: 50896962--50897317 Score: 539
Period size: 48 Copynumber: 7.6 Consensus size: 48
50896952 AGATAAATAT
50896962 ATATATGTGTGATATGTATATGTGGTAAAG-C-AATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
50897008 ATATATGTGTGATATGTATATGTGGTAAAGCCGAA-GGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* **
50897055 ATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50897103 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50897150 A-ATATGTATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
50897197 ATATCTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
** *
50897245 ATATATGTGTGATATGTATATGTGGTACGGCCGAATGGCGAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
50897292 A-ATATGTATGA-GTGTATATGTGGTAA
1 ATATATGTGTGATATGTATATGTGGTAA
50897318 TGTAACACCC
Statistics
Matches: 283, Mismatches: 22, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
45 13 0.05
46 81 0.29
47 51 0.18
48 138 0.49
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:50897252 original size:142 final size:141
Alignment explanation
Indices: 50896962--50897317 Score: 601
Period size: 142 Copynumber: 2.5 Consensus size: 141
50896952 AGATAAATAT
* *
50896962 ATATATGTGTGATATGTATATGTGGTAAAG-C-AATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG-AA-ATATGTATGATATGT
50897025 ATATGTGGTAAAGCCGAAGGCTAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGAA
64 ATATGTGGTAAAGCCGAAGGCTAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGAA
50897090 TGGCTAATGTGAA
129 TGGCTAATGTGAA
50897103 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGATATGTAT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGATATGTAT
* *
50897168 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATCTATGAGATATGTATATGTGGTAAAGCCGAAT
66 ATGTGGTAAAGCCGAA-GGCTAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGAAT
50897233 GGCTAATGTGAA
130 GGCTAATGTGAA
** *
50897245 ATATATGTGTGATATGTATATGTGGTACGGCCGAATGGCGAATGTGAAATATGTATGA-GTGTAT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGATATGTAT
50897309 ATGTGGTAA
66 ATGTGGTAA
50897318 TGTAACACCC
Statistics
Matches: 205, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
141 76 0.37
142 117 0.57
143 12 0.06
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (141 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGATATGTAT
ATGTGGTAAAGCCGAAGGCTAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGAATG
GCTAATGTGAA
Found at i:50898798 original size:29 final size:29
Alignment explanation
Indices: 50898766--50898900 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
50898756 ATACCCTCCG
** * *
50898766 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
50898795 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
50898824 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
50898853 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
50898882 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
50898901 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:50898833 original size:58 final size:58
Alignment explanation
Indices: 50898712--50898901 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
50898702 TACTCGATTT
* * * *** *
50898712 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
50898770 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
50898828 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
50898886 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
50898902 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:50906901 original size:29 final size:29
Alignment explanation
Indices: 50906869--50907002 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
50906859 ATACCCTCCG
** * *
50906869 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * *
50906898 AGCTTGCACACATAGTGTCATAT-TTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
50906926 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
50906955 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
50906984 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
50907003 GATCTCGTCA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
28 23 0.25
29 69 0.75
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:50906954 original size:57 final size:58
Alignment explanation
Indices: 50906815--50907003 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
50906805 TACTCGATTT
* * * *** *
50906815 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** *
50906873 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
50906930 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
50906988 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
50907004 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
56 4 0.04
57 46 0.44
58 55 0.52
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:50914696 original size:79 final size:80
Alignment explanation
Indices: 50914608--50914757 Score: 216
Period size: 79 Copynumber: 1.9 Consensus size: 80
50914598 AGCCCGGTTA
* *
50914608 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
50914671 -GGACTTAACCCAGATT
64 GGGACTTAACCCAGATT
** *
50914687 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
50914752 GACTTA
66 GACTTA
50914758 GGCCGGACAT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
78 3 0.05
79 45 0.71
80 15 0.24
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAACCCAGATT
Found at i:50914758 original size:40 final size:40
Alignment explanation
Indices: 50914561--50914764 Score: 227
Period size: 40 Copynumber: 5.1 Consensus size: 40
50914551 CGGAGTTTAA
** * *
50914561 CCGGATATAGCT-ACTCGTTCAAATGTCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50914601 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50914641 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
50914680 CCAGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
50914720 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGG
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50914760 CCGGA
1 CCGGA
50914765 CATCATTCGA
Statistics
Matches: 144, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
39 42 0.29
40 91 0.63
41 11 0.08
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50916648 original size:48 final size:48
Alignment explanation
Indices: 50916577--50918976 Score: 3852
Period size: 48 Copynumber: 50.0 Consensus size: 48
50916567 GGGCTGTCAC
* * *
50916577 AATATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
50916625 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50916673 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
50916721 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50916769 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50916817 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * * *
50916865 AATATATGTGTGATATGTATATGTGGTAAGGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * * *
50916913 AATATGTATGTGATATGTATATGTGGTAAGGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
50916961 AATATGTATGTGATATGTATATGTGGTAAGGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50917009 AATATATATAAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50917057 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50917105 AATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
50917153 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
**
50917201 AATACGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50917249 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50917297 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50917345 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
50917393 AATATATGTGTGATATGTATATGTGGTAAGGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
50917441 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50917489 AATATGTATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50917537 AATATATATAAGATATGTATATGTGGT-AAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50917584 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50917632 AATATGTATGAGATATGTATATGTGCTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
50917680 AATATATATAAGATATGTATATGTGGTAAAGCCGATTGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50917728 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50917776 AATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50917824 CATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
50917872 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50917920 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50917968 AATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50918016 AATATGTAT-AGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGA-GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
50918064 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * * *
50918112 AATATGTATGAGATATGTATATGTGGTAAGGTCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50918160 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
50918208 AATATATATAAGATATGTATATGTGGTAAAGCTGAATGGCTAATGCGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50918256 AATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50918304 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
50918352 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50918400 AATATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50918448 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * * *
50918496 AATATATGTGTGATATGTATATGTGGTAAGGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50918544 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50918592 AATATATATAAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50918640 AATATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50918688 AATATATATGAGGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * * *
50918736 AATATATGTGTGATATGTATATGTGGTAAGGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
50918784 AATATGTATGAGATATGTATATGTGGTAAAGCCGAAAT-GCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCG-AATGGCTAATGTGA
* * *
50918832 AATATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
50918880 AATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * **
50918928 AATATGTATGAGATATGAATATGTGGTAAAGTAGAATGGCTAATGTGA
1 AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
50918976 A
1 A
50918977 TGTTGTAACA
Statistics
Matches: 2195, Mismatches: 152, Indels: 10
0.93 0.06 0.00
Matches are distributed among these distances:
47 48 0.02
48 2143 0.98
49 4 0.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
AATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
Found at i:50920290 original size:40 final size:40
Alignment explanation
Indices: 50920246--50920397 Score: 232
Period size: 40 Copynumber: 3.8 Consensus size: 40
50920236 GAGAATTGAG
**
50920246 AGTGATGTATCTAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
50920286 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
50920326 AGTGATGTATCCGGACTAAGTCCCTAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
50920366 AGTGATATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
50920398 ATCATGCTGG
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:50923948 original size:48 final size:48
Alignment explanation
Indices: 50923879--50924622 Score: 1182
Period size: 48 Copynumber: 15.5 Consensus size: 48
50923869 AGATAAATAT
* * *
50923879 ATATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
50923927 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50923975 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
50924023 ATATATGTGTGATATGTATATGTGGTAAAGCCGGATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
50924071 ATATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50924119 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
50924167 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
50924215 ATATATATAAGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50924263 ATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
50924311 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50924359 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50924407 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
50924455 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
50924503 ATATATGTGTGATATGTATATGTGGCAAGGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50924551 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
50924599 ATATATATAACATATGTTTATGTG
1 ATATATATGAGATATGTATATGTG
50924623 AAATATGTAT
Statistics
Matches: 648, Mismatches: 48, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 648 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:50924621 original size:26 final size:26
Alignment explanation
Indices: 50924592--50924648 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
50924582 CGAATGGCTA
50924592 ATGTGAAATATATATAACATATGTTT
1 ATGTGAAATATATATAACATATGTTT
* * *
50924618 ATGTGAAATATGTATGAGATATGTTT
1 ATGTGAAATATATATAACATATGTTT
50924644 ATGTG
1 ATGTG
50924649 GTAAAGCCGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (26 bp):
ATGTGAAATATATATAACATATGTTT
Found at i:50924632 original size:74 final size:74
Alignment explanation
Indices: 50924544--50924696 Score: 261
Period size: 74 Copynumber: 2.1 Consensus size: 74
50924534 CGAATGGCTA
50924544 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAA
*
50924609 CATATGTTT
66 CATATGTAT
* * *
50924618 ATGTGAAATATGTATGAGATATGTTTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAA
*
50924683 GATATGTAT
66 CATATGTAT
50924692 ATGTG
1 ATGTG
50924697 GTAAAGCCGA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.35
Consensus pattern (74 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAA
CATATGTAT
Found at i:50924641 original size:122 final size:122
Alignment explanation
Indices: 50924496--50924744 Score: 417
Period size: 122 Copynumber: 2.0 Consensus size: 122
50924486 CGAATAGCTA
* * *
50924496 ATGTGAAATATATGTGTGATATGTATATGTGGCAAGGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATGTATGA
*
50924561 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAACATATGTTT
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAACATATGTAT
* * *
50924618 ATGTGAAATATGTATGAGATATGTTTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATGTATGA
* *
50924683 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTAT
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAACATATGTAT
50924740 ATGTG
1 ATGTG
50924745 GTAAAGCCGA
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
122 118 1.00
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.34
Consensus pattern (122 bp):
ATGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATGTATGA
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAACATATGTAT
Found at i:50924666 original size:218 final size:218
Alignment explanation
Indices: 50924400--50924839 Score: 745
Period size: 218 Copynumber: 2.0 Consensus size: 218
50924390 CGAATGGCTA
* *
50924400 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
50924465 GATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATGTGTGATATGTATATGTGGCA
66 GATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATATGTATATGTGGCA
* *
50924530 AGGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
131 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
50924595 TGAAATATATATAACATATGTTT
196 TGAAATATATATAACATATGTAT
* *
50924618 ATGTGAAATATGTATGAGATATGTTTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
50924683 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
66 GATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATATGTATATGTGGCA
* *
50924748 AAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATG
131 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
50924813 TGAAATATATATGAGATATGTAT
196 TGAAATATATATAACATATGTAT
50924836 ATGT
1 ATGT
50924840 CGTAAAGCCG
Statistics
Matches: 207, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
218 207 1.00
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.33
Consensus pattern (218 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
GATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATATGTATATGTGGCA
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TGAAATATATATAACATATGTAT
Found at i:50924674 original size:48 final size:48
Alignment explanation
Indices: 50924618--50924912 Score: 500
Period size: 48 Copynumber: 6.1 Consensus size: 48
50924608 ACATATGTTT
* *
50924618 ATGTGAAATATGTATGAGATATGTTTATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
*
50924666 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
50924714 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
50924762 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
50924810 ATGTGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGA
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* * *
50924858 ATGTGAAATATGTATGAGATATGAATATGTGGTAAAGCCGGATGGCTA
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
50924906 ATGTGAA
1 ATGTGAA
50924913 TGTTGTAACA
Statistics
Matches: 234, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 234 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
Found at i:50924732 original size:170 final size:170
Alignment explanation
Indices: 50924448--50924774 Score: 555
Period size: 170 Copynumber: 1.9 Consensus size: 170
50924438 CGAATGGCTA
* * * *
50924448 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATGTGT
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGA
* *
50924513 GATATGTATATGTGGCAAGGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
66 GATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
50924578 AAGCCGAATGGCTAATGTGAAATATATATAACATATGTTT
131 AAGCCGAATGGCTAATGTGAAATATATATAACATATGTTT
* * * *
50924618 ATGTGAAATATGTATGAGATATGTTTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGA
*
50924683 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
66 GATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
50924748 AAGCCGAATGGCTAATGTGAAATATAT
131 AAGCCGAATGGCTAATGTGAAATATAT
50924775 GTGTGATATG
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
170 146 1.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (170 bp):
ATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGA
GATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
AAGCCGAATGGCTAATGTGAAATATATATAACATATGTTT
Found at i:50924828 original size:266 final size:266
Alignment explanation
Indices: 50924352--50924868 Score: 953
Period size: 266 Copynumber: 1.9 Consensus size: 266
50924342 CGAATGGCGA
50924352 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
* *
50924417 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
*
50924482 AAGCCGAATAGCTAATGTGAAATATATGTGTGATATGTATATGTGGCAAGGCCGAATGGCTAATG
131 AAGCCGAATAGCTAATGTGAAATATATGTGTGATATGTATATGTGGCAAAGCCGAATGGCTAATG
* * *
50924547 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAACAT
196 TGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATATATATAACAT
50924612 ATGTTT
261 ATGTTT
*
50924618 ATGTGAAATATGTATGAGATATGTTTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
50924683 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
* *
50924748 AAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATG
131 AAGCCGAATAGCTAATGTGAAATATATGTGTGATATGTATATGTGGCAAAGCCGAATGGCTAATG
50924813 TGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATAT
196 TGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATAT
50924869 GTATGAGATA
Statistics
Matches: 242, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
266 242 1.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (266 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
AAGCCGAATAGCTAATGTGAAATATATGTGTGATATGTATATGTGGCAAAGCCGAATGGCTAATG
TGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATATATATAACAT
ATGTTT
Found at i:50931369 original size:43 final size:43
Alignment explanation
Indices: 50931322--50931484 Score: 218
Period size: 43 Copynumber: 3.8 Consensus size: 43
50931312 ATGCCGATAT
* *
50931322 AGAACATGACCTTTAGCGGCGCTTTTCCCTCAAATGTCGCAAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAATGTCGCAAA
* *
50931365 AGAACATGACCTTTAGCGGCGCTTTTCCCTCAAATGTCGCAAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAATGTCGCAAA
* * * **
50931408 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCCGCTGA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAATGTCGCAAA
* * *
50931451 AGAATATGACCTTTAGTGGCACTTTCCCCACAAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAA
50931485 CACCACTAAA
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 109 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTTCCCCACAAATGTCGCAAA
Found at i:50931485 original size:43 final size:43
Alignment explanation
Indices: 50931322--50931514 Score: 215
Period size: 43 Copynumber: 4.5 Consensus size: 43
50931312 ATGCCGATAT
* * * *
50931322 AGAACATGACCTTTAGCGGCGCTTTTCCCTCAAATGTCGCAAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCGCAAA
* * * *
50931365 AGAACATGACCTTTAGCGGCGCTTTTCCCTCAAATGTCGCAAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCGCAAA
* **
50931408 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCCGCTGA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCGCAAA
* * * * * *
50931451 AGAATATGACCTTTAGTGGCACTTTCCCCACAAACACCACTAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCGCAAA
* *
50931494 AGAACATGACCGTTAGTGGCG
1 AGAACATGACCTTTAGCGGCG
50931515 TTTTTTTCTC
Statistics
Matches: 133, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 133 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCGCAAA
Found at i:50931940 original size:66 final size:65
Alignment explanation
Indices: 50931855--50931988 Score: 173
Period size: 66 Copynumber: 2.0 Consensus size: 65
50931845 ATTCTAAAGC
* *
50931855 TGTAGCTGGAGTTCGTCATATTTTCTGCTT-GCCTCTGCATC-CATCACTGTTGCCTCCGCTTTA
1 TGTAGCTAGAGTTCGTCATATTTTCT--TTAGCCTCTGCATCTC-TCAATGTTGCCTCCGCTTTA
50931918 AGT
63 AGT
* **
50931921 TGTAGCTAGAGTTCTTCATATTTTCTTTGAGCCTCTGTTTCTCTCAATGTTGCCTCCGCTTTAAG
1 TGTAGCTAGAGTTCGTCATATTTTCTTT-AGCCTCTGCATCTCTCAATGTTGCCTCCGCTTTAAG
50931986 T
65 T
50931987 TG
1 TG
50931989 AGCAATTTGC
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
64 2 0.03
66 57 0.95
67 1 0.02
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.43
Consensus pattern (65 bp):
TGTAGCTAGAGTTCGTCATATTTTCTTTAGCCTCTGCATCTCTCAATGTTGCCTCCGCTTTAAGT
Found at i:50940026 original size:21 final size:21
Alignment explanation
Indices: 50940000--50940042 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
50939990 TTTGGATAGA
50940000 GCTCTTGCCTGGTACAGCTCT
1 GCTCTTGCCTGGTACAGCTCT
50940021 GCTCTTGCCTGGTACAGCTCT
1 GCTCTTGCCTGGTACAGCTCT
50940042 G
1 G
50940043 GTGTCTATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.33, G:0.26, T:0.33
Consensus pattern (21 bp):
GCTCTTGCCTGGTACAGCTCT
Found at i:50942807 original size:14 final size:14
Alignment explanation
Indices: 50942790--50942824 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
50942780 TTGAGCAGGT
* *
50942790 AAATTTCGAGGTCA
1 AAATTTCAAGGCCA
50942804 AAATTTCAAGGCCA
1 AAATTTCAAGGCCA
50942818 AAATTTC
1 AAATTTC
50942825 TTTTAGGGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (14 bp):
AAATTTCAAGGCCA
Found at i:50943856 original size:15 final size:15
Alignment explanation
Indices: 50943817--50943856 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
50943807 ACTTGGTTGA
50943817 TCCATCTTCTAACTT
1 TCCATCTTCTAACTT
*
50943832 TCCATATTCTAACTT
1 TCCATCTTCTAACTT
*
50943847 TCCCTCTTCT
1 TCCATCTTCT
50943857 TGTCAACTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.17, C:0.35, G:0.00, T:0.47
Consensus pattern (15 bp):
TCCATCTTCTAACTT
Found at i:50952320 original size:46 final size:48
Alignment explanation
Indices: 50952143--50952453 Score: 188
Period size: 46 Copynumber: 6.5 Consensus size: 48
50952133 AGAGCCAATA
* *
50952143 TAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACG-AGAGCTAGTG
1 TAAGACCATGTCTGGGACAT-GCATCGGCTA-AGAGATGTAGAGCTAGTG
** * * *
50952191 TAAGA-CATGTCTGGGACATGCATCAACCT-CGAGATGTA-AGCCAGAG
1 TAAGACCATGTCTGGGACATGCATC-GGCTAAGAGATGTAGAGCTAGTG
* *
50952237 TAAGA-CATGTTTGGGACATGCATCGGCTAAGAGATGT-G-TC-AGTG
1 TAAGACCATGTCTGGGACATGCATCGGCTAAGAGATGTAGAGCTAGTG
* * *
50952281 TAAGACCATGTCTGGGATATGGCATCGGC-ACGGATATGTGAGAGCTAGTG
1 TAAGACCATGTCTGGGACAT-GCATCGGCTA-AGAGATGT-AGAGCTAGTG
** *** *
50952331 TAAGACCATGTCTGGGACATAGTGTCGGCCTCAA-TTTTGATA-ATCT-GTG
1 TAAGACCATGTCTGGGACAT-GCATCGG-CT-AAGAGATG-TAGAGCTAGTG
* **
50952380 TAAGACCATGTTTGGGACATGGCATCAACTTAATG-GA--T-GAGCTAGTG
1 TAAGACCATGTCTGGGACAT-GCATCGGC-TAA-GAGATGTAGAGCTAGTG
50952427 TAAGACCATGTCTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACAT-GCATCG
50952454 ATATTATACA
Statistics
Matches: 206, Mismatches: 36, Indels: 43
0.72 0.13 0.15
Matches are distributed among these distances:
44 8 0.04
45 16 0.08
46 64 0.31
47 44 0.21
48 9 0.04
49 27 0.13
50 31 0.15
51 5 0.02
52 1 0.00
53 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGCATCGGCTAAGAGATGTAGAGCTAGTG
Found at i:50967225 original size:46 final size:45
Alignment explanation
Indices: 50967169--50967344 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
50967159 TATTTGGGCA
*
50967169 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATG-GAATG
* * * *
50967215 TCTGAACTCGTTGAGTTGAGTCCGACTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGGAA-T--G
* * *
50967260 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGAT-GGAATG
* *
50967308 CCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGG
50967345 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 26 0.24
48 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGGAATG
Found at i:50967324 original size:93 final size:93
Alignment explanation
Indices: 50967165--50967336 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
50967155 AGGATATTTG
* * *
50967165 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50967230 TTGAGTCCGACTTCGTGAGATGTAACTA
66 TTGAGTCCGACTTCGTGAGATGTAACTA
* * *
50967258 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50967323 TTGAGTCCGACTTC
66 TTGAGTCCGACTTC
50967337 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGACTTCGTGAGATGTAACTA
Found at i:50969126 original size:17 final size:18
Alignment explanation
Indices: 50969084--50969132 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
50969074 AGTTGAAAAG
50969084 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
50969103 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
50969120 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
50969133 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:50970034 original size:40 final size:40
Alignment explanation
Indices: 50969990--50970118 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 40
50969980 TGCTGGAAAT
* * **
50969990 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGAA
* *
50970030 TATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCAAGTTAA
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGAA
* * * *
50970070 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGAA
*
50970110 TAAATCCGG
1 TATATCCGG
50970119 TTATATTCCG
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 3 0.04
40 68 0.93
41 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGAA
Found at i:50976266 original size:17 final size:18
Alignment explanation
Indices: 50976224--50976272 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
50976214 AGTTGAAAAG
50976224 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
50976243 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
50976260 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
50976273 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:50977159 original size:40 final size:40
Alignment explanation
Indices: 50977093--50977243 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
50977083 AAATTGAATG
* * *
50977093 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
50977132 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
50977172 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
50977212 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
50977244 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:50979119 original size:23 final size:23
Alignment explanation
Indices: 50979087--50979302 Score: 153
Period size: 23 Copynumber: 9.5 Consensus size: 23
50979077 GAGTTGATGG
50979087 ACAGTAAGCTCTAATGAGCTGAA
1 ACAGTAAGCTCTAATGAGCTGAA
* * *
50979110 ACGGTAAGCTCTATTGAGTTG-A
1 ACAGTAAGCTCTAATGAGCTGAA
50979132 ACAGTAAGCTCT-ATCGAGCT-AA
1 ACAGTAAGCTCTAAT-GAGCTGAA
50979154 ATCAGTAAGCT-TCAATGAGCTGAA
1 A-CAGTAAGCTCT-AATGAGCTGAA
50979178 ACAGTAAGCTCT--TGGAAGCTGAA
1 ACAGTAAGCTCTAAT-G-AGCTGAA
* * * *
50979201 TCGGTAAGGTCCAATGAGCTGAA
1 ACAGTAAGCTCTAATGAGCTGAA
* ***
50979224 ATAGTAAGCTCTTGCGAGCT-AA
1 ACAGTAAGCTCTAATGAGCTGAA
**
50979246 ATTGGTAAGCTC-AATGAGCTGAA
1 A-CAGTAAGCTCTAATGAGCTGAA
* * *
50979269 ACAGTAAGATCTTACGAGCT-AA
1 ACAGTAAGCTCTAATGAGCTGAA
*
50979291 ATCAATAAGCTC
1 A-CAGTAAGCTC
50979303 ATACGAGCTG
Statistics
Matches: 149, Mismatches: 29, Indels: 30
0.72 0.14 0.14
Matches are distributed among these distances:
21 2 0.01
22 38 0.26
23 101 0.68
24 7 0.05
25 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.25
Consensus pattern (23 bp):
ACAGTAAGCTCTAATGAGCTGAA
Found at i:50979139 original size:45 final size:46
Alignment explanation
Indices: 50979087--50979301 Score: 203
Period size: 45 Copynumber: 4.7 Consensus size: 46
50979077 GAGTTGATGG
* * *
50979087 ACAGTAAGCTCTAAT-GAGCTGAAA-CGGTAAGC-TCTATTGAGTTG-A
1 ACAGTAAGCTCT-ATCGAGCT-AAATCAGTAAGCTTC-AATGAGCTGAA
50979132 ACAGTAAGCTCTATCGAGCTAAATCAGTAAGCTTCAATGAGCTGAA
1 ACAGTAAGCTCTATCGAGCTAAATCAGTAAGCTTCAATGAGCTGAA
* * * * *
50979178 ACAGTAAGCTCT-TGGAAGCTGAATCGGTAAGGTCCAATGAGCTGAA
1 ACAGTAAGCTCTATCG-AGCTAAATCAGTAAGCTTCAATGAGCTGAA
* **
50979224 ATAGTAAGCTCT-TGCGAGCTAAATTGGTAAGC-TCAATGAGCTGAA
1 ACAGTAAGCTCTAT-CGAGCTAAATCAGTAAGCTTCAATGAGCTGAA
* *
50979269 ACAGTAAGATCT-TACGAGCTAAATCAATAAGCT
1 ACAGTAAGCTCTAT-CGAGCTAAATCAGTAAGCT
50979302 CATACGAGCT
Statistics
Matches: 143, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
44 5 0.03
45 71 0.50
46 66 0.46
47 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (46 bp):
ACAGTAAGCTCTATCGAGCTAAATCAGTAAGCTTCAATGAGCTGAA
Found at i:50979260 original size:91 final size:89
Alignment explanation
Indices: 50979087--50979281 Score: 241
Period size: 91 Copynumber: 2.1 Consensus size: 89
50979077 GAGTTGATGG
* * *
50979087 ACAGTAAGCTCTAATGAGCTGAAACGGTAAGCTCTATTGAGTTGAACAGTAAGCTCTATCGAGCT
1 ACAGTAAGCTCT--TGAGCTGAAACGGTAAGCTCCAATGAGCTGAACAGTAAGCTCTATCGAGCT
50979152 AAATCAGTAAGCTTCAATGAGCTGAA
64 AAATCAGTAAGCTTCAATGAGCTGAA
* * *
50979178 ACAGTAAGCTCTTGGAAGCTGAATCGGTAAGGTCCAATGAGCTGAAATAGTAAGCTCT-TGCGAG
1 ACAGTAAGCTCTT-G-AGCTGAAACGGTAAGCTCCAATGAGCTG-AACAGTAAGCTCTAT-CGAG
**
50979242 CTAAATTGGTAAGC-TCAATGAGCTGAA
62 CTAAATCAGTAAGCTTCAATGAGCTGAA
*
50979269 ACAGTAAGATCTT
1 ACAGTAAGCTCTT
50979282 ACGAGCTAAA
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
89 1 0.01
90 1 0.01
91 61 0.67
92 28 0.31
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (89 bp):
ACAGTAAGCTCTTGAGCTGAAACGGTAAGCTCCAATGAGCTGAACAGTAAGCTCTATCGAGCTAA
ATCAGTAAGCTTCAATGAGCTGAA
Found at i:50979312 original size:91 final size:92
Alignment explanation
Indices: 50979134--50979312 Score: 222
Period size: 91 Copynumber: 2.0 Consensus size: 92
50979124 TGAGTTGAAC
* * *
50979134 AGTAAGCTCTATCGAGCTAAATCAGTAAGCTTCAATGAGCTGAAACAGTAAGCTCTTGGAAGCTG
1 AGTAAGCTCTATCGAGCTAAATCAGTAAGCTTCAATGAGCTGAAACAGTAAGATCTTCGAAGCTA
** * *
50979199 AATCGGTAAGGTCCAATGAGCTGAAAT
66 AATCAATAAGCTCCAACGAGCTGAAAT
**
50979226 AGTAAGCTCT-TGCGAGCTAAATTGGTAAGC-TCAATGAGCTGAAACAGTAAGATCTTACG-AGC
1 AGTAAGCTCTAT-CGAGCTAAATCAGTAAGCTTCAATGAGCTGAAACAGTAAGATCTT-CGAAGC
50979288 TAAATCAATAAGCT-CATACGAGCTG
64 TAAATCAATAAGCTCCA-ACGAGCTG
50979313 TGGTGACTCC
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
90 2 0.03
91 46 0.61
92 27 0.36
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (92 bp):
AGTAAGCTCTATCGAGCTAAATCAGTAAGCTTCAATGAGCTGAAACAGTAAGATCTTCGAAGCTA
AATCAATAAGCTCCAACGAGCTGAAAT
Found at i:50983635 original size:42 final size:42
Alignment explanation
Indices: 50983571--50983650 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
50983561 TGACATTAGG
*
50983571 GTTATGAGTTTACGTGTAAGACCATATCTGGGATATGGCATC
1 GTTATGAGTTTACGTGTAAGACCATATCTGGGACATGGCATC
* * *
50983613 GTTATGAGATTT-TGTGTTAGACCATGTCTGGGACATGG
1 GTTATGAG-TTTACGTGTAAGACCATATCTGGGACATGG
50983651 AATGGATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 30 0.91
43 3 0.09
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (42 bp):
GTTATGAGTTTACGTGTAAGACCATATCTGGGACATGGCATC
Found at i:50986369 original size:27 final size:27
Alignment explanation
Indices: 50986280--50986369 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
50986270 CCTAGACCCT
50986280 CTATATGATAAAATGACTATTTTGCCC
1 CTATATGATAAAATGACTATTTTGCCC
* * * *
50986307 CTATTTAATACAATGACTATTTTGTCC
1 CTATATGATAAAATGACTATTTTGCCC
*
50986334 CTACATGATAAAATGACTATTTTGCCC
1 CTATATGATAAAATGACTATTTTGCCC
*
50986361 CTATGTGAT
1 CTATATGAT
50986370 GTATGACTGT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (27 bp):
CTATATGATAAAATGACTATTTTGCCC
Found at i:50988594 original size:40 final size:40
Alignment explanation
Indices: 50988528--50988678 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
50988518 AAATTGAATG
* *
50988528 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
50988567 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
50988607 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
50988647 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
50988679 ACGTGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:50988692 original size:40 final size:40
Alignment explanation
Indices: 50988565--50988694 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
50988555 ATGCTGGAAA
* * *
50988565 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
50988605 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
50988645 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
50988685 TTATATCCGG
1 TTATATCCGG
50988695 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:50988693 original size:80 final size:79
Alignment explanation
Indices: 50988528--50988694 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
50988518 AAATTGAATG
*
50988528 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
50988593 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * * *
50988607 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
50988670 CATTTGTGC-ACGTGGTT
63 CAATTGTGCTA-GTGGCT
50988687 ATATCCGG
1 ATATCCGG
50988695 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 18 0.24
80 57 0.76
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:50996603 original size:40 final size:40
Alignment explanation
Indices: 50996537--50996687 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
50996527 AAATTGAATG
* * *
50996537 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
50996576 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
50996616 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
50996656 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
50996688 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:50996701 original size:40 final size:40
Alignment explanation
Indices: 50996574--50996703 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
50996564 ATGCTGGAAA
* * *
50996574 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
50996614 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
50996654 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
50996694 TTATATCCGG
1 TTATATCCGG
50996704 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:51004629 original size:40 final size:40
Alignment explanation
Indices: 51004544--51004694 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
51004534 AATTGAATGA
* * * *
51004544 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
51004584 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
51004625 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
51004664 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
51004695 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:51004708 original size:40 final size:40
Alignment explanation
Indices: 51004581--51004710 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
51004571 ATGCTGGAAA
* * *
51004581 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
51004621 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
51004661 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
51004701 TTATATCCGG
1 TTATATCCGG
51004711 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:51004709 original size:80 final size:80
Alignment explanation
Indices: 51004543--51004710 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
51004533 AAATTGAATG
* *
51004543 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
51004608 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
51004623 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
51004686 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
51004703 ATATCCGG
1 ATATCCGG
51004711 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Done.