Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 17 of 410
Found at i:4341000 original size:21 final size:21
Alignment explanation
Indices: 4340962--4341002 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4340952 GACTAAACCG
*
4340962 AAAACTCAAAGAATTTTTCAC
1 AAAACTCAAAGAAATTTTCAC
4340983 AAAATCTCAAA-AAATTTTCA
1 AAAA-CTCAAAGAAATTTTCA
4341003 AGGTACAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAACTCAAAGAAATTTTCAC
Found at i:4355448 original size:26 final size:26
Alignment explanation
Indices: 4355412--4355478 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
4355402 TCTTATCATG
4355412 CCTAACCCATTATCATGAAACATTTA
1 CCTAACCCATTATCATGAAACATTTA
*
4355438 CCTAACCCATTATCATGGAACATTTA
1 CCTAACCCATTATCATGAAACATTTA
*
4355464 CCTAACCTATTATCA
1 CCTAACCCATTATCA
4355479 ATTTGTATCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.36, C:0.28, G:0.04, T:0.31
Consensus pattern (26 bp):
CCTAACCCATTATCATGAAACATTTA
Found at i:4361205 original size:26 final size:26
Alignment explanation
Indices: 4361169--4361304 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
4361159 ACATGAATTC
4361169 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4361195 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4361221 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4361247 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4361273 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4361299 TTATCA
1 TTATCA
4361305 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4361976 original size:5 final size:5
Alignment explanation
Indices: 4361966--4361992 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
4361956 AATTTGTGTG
4361966 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
4361993 TCACACGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:4362911 original size:20 final size:20
Alignment explanation
Indices: 4362886--4362926 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
4362876 TATTTTACAC
* *
4362886 TCACTCATATTTTTTAATAT
1 TCACTCATAATTTTAAATAT
4362906 TCACTCATAATTTTAAATAT
1 TCACTCATAATTTTAAATAT
4362926 T
1 T
4362927 TCTTTGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.34, C:0.15, G:0.00, T:0.51
Consensus pattern (20 bp):
TCACTCATAATTTTAAATAT
Found at i:4373592 original size:3 final size:3
Alignment explanation
Indices: 4373586--4373620 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
4373576 AAGTAGATGA
4373586 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
4373621 TTATCATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.66, T:0.34
Consensus pattern (3 bp):
TGG
Found at i:4381437 original size:29 final size:28
Alignment explanation
Indices: 4381369--4381439 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
4381359 TAAGTACGAC
* *
4381369 TATTTTTTTATATTAAAATATATTTCTT
1 TATTTTTTTAAAATAAAATATATTTCTT
*
4381397 TTTGTTTTTTAAAATAAAATATTATTT-TT
1 TAT-TTTTTTAAAATAAAATA-TATTTCTT
4381426 TATTTTTATTAAAA
1 TATTTTT-TTAAAA
4381440 ATATTTAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 6 0.17
29 25 0.69
30 5 0.14
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (28 bp):
TATTTTTTTAAAATAAAATATATTTCTT
Found at i:4381441 original size:30 final size:29
Alignment explanation
Indices: 4381382--4381442 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
4381372 TTTTTTATAT
*
4381382 TAAAATATATTTCTTTTTGTTTTTTAAAA
1 TAAAATATATTTCTTTTTGTTTTTAAAAA
4381411 TAAAATATTATTT-TTTATT-TTTATTAAAAA
1 TAAAATA-TATTTCTTT-TTGTTT-TTAAAAA
4381441 TA
1 TA
4381443 TTTAATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (29 bp):
TAAAATATATTTCTTTTTGTTTTTAAAAA
Found at i:4382240 original size:27 final size:27
Alignment explanation
Indices: 4382170--4382232 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
4382160 CATTTACGCT
*
4382170 TCTGAGATAAGCACAATTAGTCGCGCC
1 TCTGAGATAAGCACAACTAGTCGCGCC
* *
4382197 TCTGAGAAAAGCTCAACTAGTCGCGCC
1 TCTGAGATAAGCACAACTAGTCGCGCC
4382224 TCTGAGATA
1 TCTGAGATA
4382233 GGCGCAACCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (27 bp):
TCTGAGATAAGCACAACTAGTCGCGCC
Found at i:4382334 original size:27 final size:28
Alignment explanation
Indices: 4382277--4382339 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
4382267 TACTGATCCG
*
4382277 AAAAT-AAAAAATAATATTTTATTTTAA
1 AAAATAAAAAAATAATATTTTATTATAA
*
4382304 AAAATAAAAAAAT-ATATTTT-TTAATAT
1 AAAATAAAAAAATAATATTTTATT-ATAA
4382331 AAAATAAAA
1 AAAATAAAA
4382340 GAGTCGCTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.06
27 23 0.72
28 7 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (28 bp):
AAAATAAAAAAATAATATTTTATTATAA
Found at i:4389410 original size:26 final size:27
Alignment explanation
Indices: 4389381--4389439 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
4389371 ATTATGGTTT
4389381 TGGT-CCTTTTACTCTATCCCTCCAAA
1 TGGTACCTTTTACTCTATCCCTCCAAA
**
4389407 TGGTAAGTTTTTACTCTATCCCTCCAAA
1 TGGT-ACCTTTTACTCTATCCCTCCAAA
4389435 TGGTA
1 TGGTA
4389440 AGTTTGTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.14
27 1 0.03
28 24 0.83
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (27 bp):
TGGTACCTTTTACTCTATCCCTCCAAA
Found at i:4389419 original size:28 final size:28
Alignment explanation
Indices: 4389387--4389444 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
4389377 GTTTTGGTCC
4389387 TTTTACTCTATCCCTCCAAATGGTAAGT
1 TTTTACTCTATCCCTCCAAATGGTAAGT
4389415 TTTTACTCTATCCCTCCAAATGGTAAGT
1 TTTTACTCTATCCCTCCAAATGGTAAGT
4389443 TT
1 TT
4389445 GTACATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (28 bp):
TTTTACTCTATCCCTCCAAATGGTAAGT
Found at i:4391961 original size:22 final size:22
Alignment explanation
Indices: 4391936--4391984 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
4391926 TTTTCTTGTT
*
4391936 ATTTT-CTACCTATTTTGCTACC
1 ATTTTACTA-CTATCTTGCTACC
* *
4391958 ATTTTACTATTATCTTGCTACT
1 ATTTTACTACTATCTTGCTACC
4391980 ATTTT
1 ATTTT
4391985 GTTGTTATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.55
Consensus pattern (22 bp):
ATTTTACTACTATCTTGCTACC
Found at i:4392238 original size:12 final size:12
Alignment explanation
Indices: 4392208--4392240 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
4392198 TATATATTTT
4392208 AAAATT-ATATA
1 AAAATTAATATA
4392219 AAAA-TAATATA
1 AAAATTAATATA
4392230 AAAATTAATAT
1 AAAATTAATAT
4392241 GATCGGGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:4395729 original size:39 final size:39
Alignment explanation
Indices: 4395647--4395890 Score: 226
Period size: 39 Copynumber: 6.2 Consensus size: 39
4395637 CAAATCCAAT
* * *
4395647 CACCACCATAAAGCATGCGGGACTTTAAGGCC-GGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTT-A-GCCTGGATATAA
* *
4395687 TACCAGCACAAAGCCTGCGAGACTTTAGCCTGGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTTAGCCTGGATATAA
* *
4395726 TACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTTAGCCTGGATATAA
* * * *
4395765 CACCAGCACGAATGCCTTCGGGGC-TTAACCTGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTTAGCCTGGATATAA
* * * * *
4395804 CACCAGCACGAATGCCTTCGGGGC-TTAACCCGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTTAGCCTGGATATAA
* * * * *
4395843 CACCAGCACGAATGCCTTCGGGGC-TTAACCCGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTTAGCCTGGATATAA
4395882 CACCAGCAC
1 CACCAGCAC
4395891 GAATGCCTTA
Statistics
Matches: 188, Mismatches: 14, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
38 3 0.02
39 153 0.81
40 32 0.17
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (39 bp):
CACCAGCACAAAGCCTGCGGGACTTTAGCCTGGATATAA
Found at i:4395891 original size:39 final size:39
Alignment explanation
Indices: 4395677--4395899 Score: 297
Period size: 39 Copynumber: 5.7 Consensus size: 39
4395667 GACTTTAAGG
* * * * * *
4395677 CCGGATATAATACCAGCAC-AAAGCCTGCGAGACTTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGGC-TTAAC
* * * * * *
4395716 CTGGATATAATACCAGCAC-AAAGCCTGCGGGACTTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGGC-TTAAC
4395755 CCGGATATAACACCAGCACGAATGCCTTCGGGGCTTAAC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGGCTTAAC
*
4395794 CTGGATATAACACCAGCACGAATGCCTTCGGGGCTTAAC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGGCTTAAC
4395833 CCGGATATAACACCAGCACGAATGCCTTCGGGGCTTAAC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGGCTTAAC
4395872 CCGGATATAACACCAGCACGAATGCCTT
1 CCGGATATAACACCAGCACGAATGCCTT
4395900 ATCAACCATT
Statistics
Matches: 173, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 162 0.94
40 11 0.06
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
CCGGATATAACACCAGCACGAATGCCTTCGGGGCTTAAC
Found at i:4396426 original size:110 final size:110
Alignment explanation
Indices: 4396233--4396452 Score: 431
Period size: 110 Copynumber: 2.0 Consensus size: 110
4396223 TGTGGATAGG
4396233 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
4396298 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
*
4396343 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCTTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
4396408 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
4396453 AATAGTCACA
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 109 1.00
ACGTcount: A:0.24, C:0.21, G:0.08, T:0.47
Consensus pattern (110 bp):
CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
Found at i:4399722 original size:41 final size:43
Alignment explanation
Indices: 4399665--4400145 Score: 143
Period size: 41 Copynumber: 10.7 Consensus size: 43
4399655 AGCTATAAAC
* * *
4399665 CACAAATCTCATCTCTCTGAAGTTGCAGTAAAGCA-AATCA-A
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTAAAGCATAATCATA
* * ** *
4399706 CACAAGTCTTATCTCTCTGAACTTGCAGTGGAGCAGACTAGA-GATA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTAAAGC--A-TA-ATCATA
* * * *
4399752 GA-AAATCTTATTTCCCTGAAGTTGCAGTGGAACAG-ATTGAAGCTATA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGT--AA-AGCA-T-AATC-ATA
* * * *
4399799 AACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGCA-AATCA-A
1 CA-CA-AG-TCTTATCTCCCTGAAGTTGCAGTAAAGCATAATCATA
* **
4399843 CACAAGTCTTATCTCCCTGAAGTTACAGTGGAACAG-ACTAAAGATA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGT--AA-AGCA-TAATCATA
* * *
4399889 GCA-AA-TTTTATTTCCCTGAAGTTGCAGTGGAACAG-ATTGAAGCTATA
1 -CACAAGTCTTATCTCCCTGAAGTTGCAGT--AA-AGCA-T-AATC-ATA
* * * * *
4399936 AATCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGCA-GATCA-A
1 CA-CA-AG-TCTTATCTCCCTGAAGTTGCAGTAAAGCATAATCATA
* **
4399980 CACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGATA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTAAAGC--A-TAATCATA
* *
4400026 GCA-AA-TCTTATTTCCCTGAAGTTGCAGTGGAATAG-ATTGAAGCAATA
1 -CACAAGTCTTATCTCCCTGAAGTTGCAGT--AA-AGCA-T-AATC-ATA
* * * * *
4400073 AACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGCA-GATCA-A
1 CA-CA-AG-TCTTATCTCCCTGAAGTTGCAGTAAAGCATAATCATA
4400117 CACAAGTCTTATCTCCCTGAAGTTGCAGT
1 CACAAGTCTTATCTCCCTGAAGTTGCAGT
4400146 GGAGCAGACT
Statistics
Matches: 327, Mismatches: 64, Indels: 98
0.67 0.13 0.20
Matches are distributed among these distances:
41 96 0.29
42 6 0.02
43 10 0.03
44 8 0.02
45 88 0.27
46 23 0.07
47 15 0.05
48 12 0.04
49 9 0.03
50 1 0.00
51 59 0.18
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (43 bp):
CACAAGTCTTATCTCCCTGAAGTTGCAGTAAAGCATAATCATA
Found at i:4399877 original size:92 final size:93
Alignment explanation
Indices: 4399434--4400190 Score: 379
Period size: 92 Copynumber: 8.3 Consensus size: 93
4399424 ATTAAAGTCA
* * * * * * *
4399434 CAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAGAGATAGCAAATCTTATTTCCCTGAA
1 CAAGATCTCATCTCCCTGAAGTTGCAGTAGAGCAGAAT-CAGACAGCAAGTCTTATCTCCCTGAA
4399498 GTTGCAGTGGAACAGATTGAAGCTATAAAC
65 GTTGCAGTGGAACAGATTGAAGC-ATAAAC
* * * *
4399528 CACAGATCTCATCTCTCTGAAGTTGTAGTAGAGCAG-ATCA-ACA-TAAGTCTTATCTCCCTAAA
1 CA-AGATCTCATCTCCCTGAAGTTGCAGTAGAGCAGAATCAGACAGCAAGTCTTATCTCCCTGAA
** * * *
4399590 GTTGCAGTGGAGTAGACTAAAG-ATAGA-
65 GTTGCAGTGGAACAGATTGAAGCATAAAC
* * * * * * * *
4399617 -AA-ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCA-CAAATCTCATCT
1 CAAGATCTCATCTCCCTGAAGTTGCAGTAGAGC--A--GAA--T-CAGA-CAGCAAGTCTTATCT
* * *
4399679 CTCTGAAGTTGCAGT--AA-AG---CAA--ATCAAC
58 CCCTGAAGTTGCAGTGGAACAGATTGAAGCATAAAC
* * * * * * * * * *
4399707 ACAAG-TCTTATCTCTCTGAACTTGCAGTGGAGCAGACTAGAGATAGAAAATCTTATTTCCCTGA
1 -CAAGATCTCATCTCCCTGAAGTTGCAGTAGAGCAGAAT-CAGACAGCAAGTCTTATCTCCCTGA
4399771 AGTTGCAGTGGAACAGATTGAAGCTATAAAC
64 AGTTGCAGTGGAACAGATTGAAGC-ATAAAC
*
4399802 CACAGATCTCATCTCTCTGAAGTTGCAGTAGAGCA-AATCA-ACA-CAAGTCTTATCTCCCTGAA
1 CA-AGATCTCATCTCCCTGAAGTTGCAGTAGAGCAGAATCAGACAGCAAGTCTTATCTCCCTGAA
* * * *
4399864 GTTACAGTGGAACAGACTAAAG-AT--AG
65 GTTGCAGTGGAACAGATTGAAGCATAAAC
* * * * * * * * * *
4399890 CAA-ATTTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTCATCTC
1 CAAGATCTCATCTCCCTGAAGTTGCAGTAGAGC--A--GAATC-AGACAGCA-AG-TCTTATCTC
* * * *
4399954 TCTGAAGTTGCAGTAGAGCAGA-T----CA-ACA-
59 CCTGAAGTTGCAGTGGAACAGATTGAAGCATAAAC
* * * * * *
4399982 CAAG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGAA
1 CAAGATCTCATCTCCCTGAAGTTGCAGTAGAGCAGAAT-CAGACAGCAAGTCTTATCTCCCTGAA
*
4400046 GTTGCAGTGGAATAGATTGAAGCAATAAAC
65 GTTGCAGTGGAACAGATTGAAGC-ATAAAC
*
4400076 CACAGATCTCATCTCTCTGAAGTTGCAGTAGAGCAG-ATCA-ACA-CAAGTCTTATCTCCCTGAA
1 CA-AGATCTCATCTCCCTGAAGTTGCAGTAGAGCAGAATCAGACAGCAAGTCTTATCTCCCTGAA
* * * *
4400138 GTTGCAGTGGAGCAGACTAAAG-AT--AG
65 GTTGCAGTGGAACAGATTGAAGCATAAAC
* *
4400164 CAA-ATCTTATTTCCCTGAAGTTGCAGT
1 CAAGATCTCATCTCCCTGAAGTTGCAGT
4400191 GGAACAGATT
Statistics
Matches: 505, Mismatches: 105, Indels: 114
0.70 0.15 0.16
Matches are distributed among these distances:
85 1 0.00
86 119 0.24
87 5 0.01
88 20 0.04
89 5 0.01
90 13 0.03
91 5 0.01
92 161 0.32
93 14 0.03
94 13 0.03
95 19 0.04
96 130 0.26
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (93 bp):
CAAGATCTCATCTCCCTGAAGTTGCAGTAGAGCAGAATCAGACAGCAAGTCTTATCTCCCTGAAG
TTGCAGTGGAACAGATTGAAGCATAAAC
Found at i:4400151 original size:41 final size:44
Alignment explanation
Indices: 4400081--4400199 Score: 136
Period size: 45 Copynumber: 2.8 Consensus size: 44
4400071 TAAACCACAG
* * * *
4400081 ATCTCATCTCTCTGAAGTTGCAGTAGAGCAGAT-CA-ACA-CAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAGACAGCAA
* *
4400122 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAGACAGCAA
* *
4400167 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGAT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
4400200 TGAAGCTATA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
41 28 0.43
42 1 0.02
43 1 0.02
44 3 0.05
45 32 0.49
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAGACAGCAA
Found at i:4400279 original size:137 final size:137
Alignment explanation
Indices: 4399432--4400258 Score: 1429
Period size: 137 Copynumber: 6.0 Consensus size: 137
4399422 AGATTAAAGT
*
4399432 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAGAGATAGCAAATCTTATTTCCCTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
*
4399497 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGTAGTAGAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
4399562 AGATCAA
131 AGATCAA
* * * *
4399569 CATAAGTCTTATCTCCCTAAAGTTGCAGTGGAGTAGACTAAAGATAGAAAATCTTATTTCCCTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
* *
4399634 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAAATCTCATCTCTCTGAAGTTGCAGTAAAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
*
4399699 AAATCAA
131 AGATCAA
* * * *
4399706 CACAAGTCTTATCTCTCTGAACTTGCAGTGGAGCAGACTAGAGATAGAAAATCTTATTTCCCTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
4399771 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
*
4399836 AAATCAA
131 AGATCAA
* * *
4399843 CACAAGTCTTATCTCCCTGAAGTTACAGTGGAACAGACTAAAGATAGCAAATTTTATTTCCCTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
*
4399908 AGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
4399973 AGATCAA
131 AGATCAA
*
4399980 CACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
* *
4400045 AGTTGCAGTGGAATAGATTGAAGCAATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
4400110 AGATCAA
131 AGATCAA
4400117 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
* * *
4400182 AGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGAGCTCATCTCTCTAAAGTTGCAGTAGAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
4400247 AGATCAA
131 AGATCAA
*
4400254 AACAA
1 CACAA
4400259 ACCCTATTTC
Statistics
Matches: 650, Mismatches: 40, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 650 1.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26
Consensus pattern (137 bp):
CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
AGATCAA
Found at i:4400501 original size:25 final size:25
Alignment explanation
Indices: 4400471--4400519 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
4400461 ATTTGCCCGG
4400471 CCCGTTTACAACCCCTAAACCCAAT
1 CCCGTTTACAACCCCTAAACCCAAT
4400496 CCCGTTTACAACCCCTAAACCCAA
1 CCCGTTTACAACCCCTAAACCCAA
4400520 CACCCAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.45, G:0.04, T:0.18
Consensus pattern (25 bp):
CCCGTTTACAACCCCTAAACCCAAT
Found at i:4403027 original size:132 final size:131
Alignment explanation
Indices: 4402774--4403040 Score: 313
Period size: 132 Copynumber: 2.0 Consensus size: 131
4402764 TTTTTTATAA
** * *
4402774 TTTTTAAAAATTATTTAAAACGAAGGCGATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTA
1 TTTTTAAAAATTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGGGGAATAGTGCCCTA
* * * * * ** ** * *
4402839 CCGTGCTGGGTTGCAATTTCTCGTTCGCTCGAAATAATCGAGTGTCTTTTTAGAATTTCACTCAT
66 CCGTGCTGGGTTGCAATCTCCCATTCGCTCAAAATAATCGAATACCCCTTCAGAATTTCACACAT
4402904 G
131 G
*
4402905 TTTTCTAAAAACTT-TTTAAAATGAAGGAAATGTTCGATGTTTAGCAATTCGGAGG-ATAGTGCC
1 TTTT-TAAAAA-TTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGG-GGAATAGTGCC
* * *
4402968 CTATCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAATACCCCTTCGGAATTTCACA
63 CTACCGTGCTGGGTTGCAATCTCCCATTCGCTCAAAATAATCGAATACCCCTTCAGAATTTCACA
*
4403033 CGTG
128 CATG
4403037 TTTT
1 TTTT
4403041 ATAAGGCAAG
Statistics
Matches: 113, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
131 4 0.04
132 105 0.93
133 4 0.04
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (131 bp):
TTTTTAAAAATTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGGGGAATAGTGCCCTA
CCGTGCTGGGTTGCAATCTCCCATTCGCTCAAAATAATCGAATACCCCTTCAGAATTTCACACAT
G
Found at i:4405158 original size:25 final size:25
Alignment explanation
Indices: 4405128--4405176 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
4405118 ATTTGCCCGG
4405128 CCCGTTTACAACC-CTTAAACCCAAT
1 CCCGTTTACAACCTC-TAAACCCAAT
4405153 CCCGTTTACAACCTCTAAACCCAA
1 CCCGTTTACAACCTCTAAACCCAA
4405177 CACCCAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.33, C:0.41, G:0.04, T:0.22
Consensus pattern (25 bp):
CCCGTTTACAACCTCTAAACCCAAT
Found at i:4407542 original size:131 final size:130
Alignment explanation
Indices: 4407334--4407570 Score: 334
Period size: 131 Copynumber: 1.8 Consensus size: 130
4407324 TTTTTTATAA
** * *
4407334 TTTTTAAAAATTATTTAAAACGAAGGCGATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTA
1 TTTTTAAAAATTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGGGGAATAGTGCCCTA
* * * * *
4407399 CCGTGCTGGGTTGTAATTTCTCGTTTGCTCTAAATAATCGAGTGTCTCTTTAGAATATTCTCATG
66 CCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAGTGTCTCTTTAGAATATTCTCATG
*
4407464 TTTTCTAAAAACTT-TTTAAAATGAAGGAAATGTTCGATGTTTAGCAATTCGGAGG-ATAGTGCC
1 TTTT-TAAAAA-TTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGG-GGAATAGTGCC
*
4407527 CTATCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGA
63 CTACCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGA
4407571 ATACCCCTTC
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
130 4 0.04
131 85 0.91
132 4 0.04
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (130 bp):
TTTTTAAAAATTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGGGGAATAGTGCCCTA
CCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAGTGTCTCTTTAGAATATTCTCATG
Found at i:4407585 original size:131 final size:131
Alignment explanation
Indices: 4407334--4407603 Score: 323
Period size: 131 Copynumber: 2.1 Consensus size: 131
4407324 TTTTTTATAA
** * *
4407334 TTTT-TAAAAATTATTTAAAACGAAGGCGATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCT
1 TTTTCTAAAAATTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGGGGAATAGTGCCCT
* * * * * * ** * * *
4407398 ACCGTGCTGGGTTGTAATTTCTCGTTTGCTCTAAATAATCGAGTGTCTCTTTAGAATATTCTCA-
66 ACCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAATACCCCTTCAGAAT-TTCACAC
4407462 TG
130 TG
*
4407464 TTTTCTAAAAACTT-TTTAAAATGAAGGAAATGTTCGATGTTTAGCAATTCGGAGG-ATAGTGCC
1 TTTTCTAAAAA-TTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGG-GGAATAGTGCC
*
4407527 CTATCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAATACCCCTTCAGAATTTCACA
64 CTACCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAATACCCCTTCAGAATTTCACA
4407592 CGTG
129 C-TG
4407596 TTTTCTAA
1 TTTTCTAA
4407604 GGCAAGGCAA
Statistics
Matches: 118, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
130 9 0.08
131 95 0.81
132 14 0.12
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (131 bp):
TTTTCTAAAAATTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGGGGAATAGTGCCCT
ACCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAATACCCCTTCAGAATTTCACACT
G
Found at i:4422563 original size:19 final size:20
Alignment explanation
Indices: 4422523--4422565 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
4422513 ATAATTATTT
*
4422523 ATTTAATTTTTTTACTTATA
1 ATTTAAATTTTTTACTTATA
*
4422543 ATTTAAATTTTTTA-TTTTA
1 ATTTAAATTTTTTACTTATA
4422562 ATTT
1 ATTT
4422566 TGTACATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTAAATTTTTTACTTATA
Found at i:4426714 original size:17 final size:17
Alignment explanation
Indices: 4426692--4426725 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4426682 TTATAATAAA
4426692 TTAAGCACTATTATTTT
1 TTAAGCACTATTATTTT
4426709 TTAAGCACTATTATTTT
1 TTAAGCACTATTATTTT
4426726 CTCTTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (17 bp):
TTAAGCACTATTATTTT
Found at i:4428319 original size:12 final size:12
Alignment explanation
Indices: 4428302--4428330 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
4428292 ATTCGCAATT
4428302 CACTTGTATTCA
1 CACTTGTATTCA
4428314 CACTTGTATTCA
1 CACTTGTATTCA
4428326 CACTT
1 CACTT
4428331 TACTTCTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.28, G:0.07, T:0.41
Consensus pattern (12 bp):
CACTTGTATTCA
Found at i:4428451 original size:13 final size:14
Alignment explanation
Indices: 4428435--4428470 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
4428425 CAATATCATA
4428435 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
4428448 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
4428461 TCTC-ATTTCA
1 TCTCAATTTCA
4428471 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:4428692 original size:23 final size:23
Alignment explanation
Indices: 4428624--4428698 Score: 86
Period size: 21 Copynumber: 3.4 Consensus size: 23
4428614 CCTGATCAGT
** *
4428624 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
4428646 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
4428666 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
*
4428689 ATACAACACA
1 ATACGACACA
4428699 TAAAGTGCCT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
20 1 0.02
21 34 0.76
22 1 0.02
23 9 0.20
ACGTcount: A:0.40, C:0.27, G:0.20, T:0.13
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:4428706 original size:23 final size:23
Alignment explanation
Indices: 4428624--4428710 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
4428614 CCTGATCAGT
*
4428624 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
4428646 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
4428666 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
4428689 ATACAACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
4428711 TCGATAAAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.63
22 1 0.02
23 18 0.33
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:4429880 original size:13 final size:13
Alignment explanation
Indices: 4429862--4429888 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4429852 CCTCTTTTTA
4429862 TTCTTTTGTTTCT
1 TTCTTTTGTTTCT
4429875 TTCTTTTGTTTCT
1 TTCTTTTGTTTCT
4429888 T
1 T
4429889 ATATATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.78
Consensus pattern (13 bp):
TTCTTTTGTTTCT
Found at i:4430398 original size:18 final size:19
Alignment explanation
Indices: 4430375--4430414 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
4430365 CATTTGCTTC
*
4430375 AAAAAT-AATTTCTTATTG
1 AAAAATAAAATTCTTATTG
4430393 AAAAATAAAATTCTTATTG
1 AAAAATAAAATTCTTATTG
4430412 AAA
1 AAA
4430415 TTGGTTCGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
AAAAATAAAATTCTTATTG
Found at i:4437101 original size:278 final size:278
Alignment explanation
Indices: 4436604--4437153 Score: 1064
Period size: 278 Copynumber: 2.0 Consensus size: 278
4436594 TCCCGCAAGA
4436604 CTTTTGTCACCTGATGTCACACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGGA
1 CTTTTGTCACCTGATGTCACACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGGA
*
4436669 TCGAACCATACGAGGTGCACCTTCAGGTGATAGTTTTGAGAGATATGTAGGTGTCTGAACAATAC
66 TCGAACCATACGAGGTGCACCTTCAGGTGATAGTTTTGAGAGATATATAGGTGTCTGAACAATAC
4436734 CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
131 CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
*
4436799 ATAGATGAAAGGAGTATAAATACTAGAACAATATATGGTAGATATCACCTTTACAGGTAGCTGAA
196 ATAGATGAAAGGAGTATAAATACTAGAACAATATATAGTAGATATCACCTTTACAGGTAGCTGAA
4436864 TTAAGCTTGAGTATTAAG
261 TTAAGCTTGAGTATTAAG
4436882 CTTTTGTCACCTGATGTCACACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGGA
1 CTTTTGTCACCTGATGTCACACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGGA
*
4436947 TCGAACCATACGAGGTGCCCCTTCAGGTGATAGTTTTGAGAGATATATAGGTGTCTGAACAATAC
66 TCGAACCATACGAGGTGCACCTTCAGGTGATAGTTTTGAGAGATATATAGGTGTCTGAACAATAC
4437012 CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
131 CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
*
4437077 ATAGATGAAAGGAGTATAAATACTAGAACAATATATAGTAGATATCAGCTTTACAGGTAGCTGAA
196 ATAGATGAAAGGAGTATAAATACTAGAACAATATATAGTAGATATCACCTTTACAGGTAGCTGAA
4437142 TTAAGCTTGAGT
261 TTAAGCTTGAGT
4437154 TCACATATGA
Statistics
Matches: 268, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
278 268 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (278 bp):
CTTTTGTCACCTGATGTCACACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGGA
TCGAACCATACGAGGTGCACCTTCAGGTGATAGTTTTGAGAGATATATAGGTGTCTGAACAATAC
CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
ATAGATGAAAGGAGTATAAATACTAGAACAATATATAGTAGATATCACCTTTACAGGTAGCTGAA
TTAAGCTTGAGTATTAAG
Found at i:4447137 original size:18 final size:19
Alignment explanation
Indices: 4447107--4447148 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
4447097 TTTTTAAAAA
*
4447107 TTAA-AAATATTAT-TTTT
1 TTAATAAATATTATACTTT
*
4447124 TTAATAAATTTTATACTTT
1 TTAATAAATATTATACTTT
4447143 TTAATA
1 TTAATA
4447149 GTTTTAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 8 0.38
19 9 0.43
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TTAATAAATATTATACTTT
Found at i:4459910 original size:16 final size:16
Alignment explanation
Indices: 4459889--4459920 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
4459879 TTTGATTCAC
4459889 AGAGAATGGAATTTAT
1 AGAGAATGGAATTTAT
4459905 AGAGAATGGAATTTAT
1 AGAGAATGGAATTTAT
4459921 CTTTTTGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (16 bp):
AGAGAATGGAATTTAT
Found at i:4460175 original size:3 final size:3
Alignment explanation
Indices: 4460167--4460208 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
4460157 AGTTGATTGA
4460167 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4460209 TAACATTCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4462629 original size:19 final size:19
Alignment explanation
Indices: 4462601--4462645 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 19
4462591 GCCGATTATA
4462601 TCTTTCTTTTTTT-TCTTTT
1 TCTTT-TTTTTTTCTCTTTT
4462620 TCTTTTTTTTTTCTCTTTT
1 TCTTTTTTTTTTCTCTTTT
4462639 TGCTTTT
1 T-CTTTT
4462646 ACTTTTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.29
19 12 0.50
20 5 0.21
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (19 bp):
TCTTTTTTTTTTCTCTTTT
Found at i:4463514 original size:20 final size:19
Alignment explanation
Indices: 4463467--4463520 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
4463457 AAAATAAAAT
*
4463467 AAAATAAAAATATATTCAA
1 AAAATAAAAATAAATTCAA
* *
4463486 AAATGTAAAAATAAATTTAA
1 AAA-ATAAAAATAAATTCAA
4463506 GAAAAT-AAAATAAAT
1 -AAAATAAAAATAAAT
4463521 GGATAAATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 12 0.41
20 14 0.48
21 3 0.10
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.26
Consensus pattern (19 bp):
AAAATAAAAATAAATTCAA
Found at i:4469655 original size:13 final size:13
Alignment explanation
Indices: 4469637--4469679 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
4469627 TAGATTTTTC
4469637 CTAAATATTATCA
1 CTAAATATTATCA
*
4469650 CTAAATA--ATTA
1 CTAAATATTATCA
4469661 -TAAATATTATCA
1 CTAAATATTATCA
4469673 CTAAATA
1 CTAAATA
4469680 ATTCTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:4469668 original size:23 final size:23
Alignment explanation
Indices: 4469638--4469688 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
4469628 AGATTTTTCC
4469638 TAAATATTATCACTAAATAATTA
1 TAAATATTATCACTAAATAATTA
*
4469661 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTA
4469684 TAAAT
1 TAAAT
4469689 TTTAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTA
Found at i:4475515 original size:29 final size:28
Alignment explanation
Indices: 4475483--4475560 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 28
4475473 AAACTTGCAT
* *
4475483 TTTAAAATCTGAAAAATAAATAGACTAAA
1 TTTAAAATAT-AAAAATAAAAAGACTAAA
4475512 TTTATTAAA-ATAAAAATAAAAAGACTAAA
1 TTTA--AAATATAAAAATAAAAAGACTAAA
4475541 TTTTAAATATACTAAAAATA
1 -TTTAAA-ATA-TAAAAATA
4475561 CAAGGACCTA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
28 2 0.05
29 22 0.54
30 6 0.15
31 11 0.27
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (28 bp):
TTTAAAATATAAAAATAAAAAGACTAAA
Found at i:4476114 original size:15 final size:15
Alignment explanation
Indices: 4476057--4476119 Score: 56
Period size: 15 Copynumber: 3.9 Consensus size: 15
4476047 ATTCAGCAGT
*
4476057 AAGGAGAAGAAAATAA
1 AAGGAGAAGAAAA-AG
*
4476073 AAGGA-AAGAAAGGAG
1 AAGGAGAAGAAA-AAG
4476088 AAGAGAAGGAAGAAAAAG
1 AAG-G-A-GAAGAAAAAG
4476106 AAGGAGAAGAAAAA
1 AAGGAGAAGAAAAA
4476120 AAGAAGATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
15 19 0.49
16 7 0.18
17 2 0.05
18 5 0.13
19 6 0.15
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02
Consensus pattern (15 bp):
AAGGAGAAGAAAAAG
Found at i:4480207 original size:33 final size:33
Alignment explanation
Indices: 4480147--4480215 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
4480137 GAGTACTGCA
*
4480147 GTGGATACGGGCCGGGGGCAGTACTATAATGCG
1 GTGGATACGGGCCGGGAGCAGTACTATAATGCG
* * *
4480180 GTGGATATGGGCCGGGAG-AGGTGCTATACTGCG
1 GTGGATACGGGCCGGGAGCA-GTACTATAATGCG
4480213 GTG
1 GTG
4480216 TGTACGACCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.19, C:0.16, G:0.45, T:0.20
Consensus pattern (33 bp):
GTGGATACGGGCCGGGAGCAGTACTATAATGCG
Found at i:4480357 original size:72 final size:72
Alignment explanation
Indices: 4480263--4480403 Score: 228
Period size: 72 Copynumber: 2.0 Consensus size: 72
4480253 GCCCCCCGAT
*
4480263 GAGCCCGAGAAATTGTCATTGTCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATG
1 GAGCCCGAGAAATAGTCATTGTCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATG
4480328 CGATGAC
66 CGATGAC
* * * * *
4480335 GAGCCCGGGAAATAGTCATTGTCTGCCAAATCCGGATGATAAGAAGTATCAGTCGAATGTGAATG
1 GAGCCCGAGAAATAGTCATTGTCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATG
4480400 CGAT
66 CGAT
4480404 CACTCGGACT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.21
Consensus pattern (72 bp):
GAGCCCGAGAAATAGTCATTGTCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATG
CGATGAC
Found at i:4481640 original size:9 final size:9
Alignment explanation
Indices: 4481626--4481656 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
4481616 AATTAAATAG
4481626 TTCGAGTTA
1 TTCGAGTTA
4481635 TTCGAGTTA
1 TTCGAGTTA
4481644 TTCGAGTTA
1 TTCGAGTTA
4481653 TTCG
1 TTCG
4481657 GATCGACTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.19, C:0.13, G:0.23, T:0.45
Consensus pattern (9 bp):
TTCGAGTTA
Found at i:4481900 original size:35 final size:36
Alignment explanation
Indices: 4481838--4481908 Score: 135
Period size: 35 Copynumber: 2.0 Consensus size: 36
4481828 TTCTTTCTGC
4481838 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
4481874 CGTTCCAAATTCCCA-CCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
4481909 TTCTTCTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 20 0.57
36 15 0.43
ACGTcount: A:0.17, C:0.49, G:0.03, T:0.31
Consensus pattern (36 bp):
CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
Found at i:4482036 original size:21 final size:21
Alignment explanation
Indices: 4482024--4482064 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
4482014 CACGACCACA
*
4482024 GTTCCACAAGCCACAAACAAG
1 GTTCCACAAGCCACAACCAAG
4482045 GTTCCACAAGCCACAACCAA
1 GTTCCACAAGCCACAACCAA
4482065 CGTCAGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.37, G:0.12, T:0.10
Consensus pattern (21 bp):
GTTCCACAAGCCACAACCAAG
Found at i:4482602 original size:45 final size:45
Alignment explanation
Indices: 4482532--4482622 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
4482522 AATTAAATTA
** *
4482532 ACCATTATTAACAGGTTTAGTTTCATTTAAGTCATGCATATATAT
1 ACCATTATTAACAGGTTTAACTTCATTTAAGTCAAGCATATATAT
* *
4482577 ACCATTCTTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
1 ACCATTATTAACAGGTTTAACTTCATTTAAGTCAAGCATATATAT
4482622 A
1 A
4482623 TATATATATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (45 bp):
ACCATTATTAACAGGTTTAACTTCATTTAAGTCAAGCATATATAT
Found at i:4482621 original size:2 final size:2
Alignment explanation
Indices: 4482614--4482643 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4482604 TAAGTCAAGC
4482614 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4482644 TAATGCATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4482680 original size:36 final size:36
Alignment explanation
Indices: 4482640--4482712 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
4482630 ATATATATAT
* *
4482640 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
4482676 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
4482712 A
1 A
4482713 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:4482750 original size:43 final size:41
Alignment explanation
Indices: 4482703--4482782 Score: 117
Period size: 41 Copynumber: 1.9 Consensus size: 41
4482693 TAATGTTTTG
*
4482703 CTTCATTTAAGTCATGCGCATAA-TGCATATATATTCCATTTAA
1 CTTCATTTAAGTCAT--G-ATAATTGCATATATATACCATTTAA
4482746 CTTCATTTAAGTCATGATAATTGCATATATATACCAT
1 CTTCATTTAAGTCATGATAATTGCATATATATACCAT
4482783 AATTAGCAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
40 4 0.11
41 16 0.46
43 15 0.43
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (41 bp):
CTTCATTTAAGTCATGATAATTGCATATATATACCATTTAA
Found at i:4482771 original size:41 final size:42
Alignment explanation
Indices: 4482680--4482782 Score: 120
Period size: 43 Copynumber: 2.5 Consensus size: 42
4482670 CATTTAATAT
*** **
4482680 TAATGCATATATATAATGTTTTGCTTCATTTAAGTCATGCGCA
1 TAATGCATATATATACCATTTAACTTCATTTAAGTCAT-CGCA
*
4482723 TAATGCATATATATTCCATTTAACTTCATTTAAGTCAT-G-A
1 TAATGCATATATATACCATTTAACTTCATTTAAGTCATCGCA
4482763 TAATTGCATATATATACCAT
1 TAA-TGCATATATATACCAT
4482783 AATTAGCAGG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 4 0.08
41 16 0.31
43 32 0.62
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.42
Consensus pattern (42 bp):
TAATGCATATATATACCATTTAACTTCATTTAAGTCATCGCA
Found at i:4482942 original size:185 final size:186
Alignment explanation
Indices: 4482630--4483014 Score: 718
Period size: 185 Copynumber: 2.1 Consensus size: 186
4482620 ATATATATAT
*
4482630 ATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATA
1 ATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATA
**
4482695 ATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCA
66 AAATTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCA
*
4482760 TG-ATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC
131 TGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGC
4482815 ATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATA
1 ATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATA
*
4482880 AAATTTTGCTTTATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCA
66 AAATTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCA
4482945 TGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGC
131 TGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGC
4483001 ATATATATATATAT
1 ATATATATATATAT
4483015 ATATATCACT
Statistics
Matches: 194, Mismatches: 5, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
185 128 0.66
186 66 0.34
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.41
Consensus pattern (186 bp):
ATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATA
AAATTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCA
TGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGC
Found at i:4483385 original size:44 final size:43
Alignment explanation
Indices: 4483156--4483549 Score: 567
Period size: 44 Copynumber: 9.1 Consensus size: 43
4483146 AAAAATTTGT
* *
4483156 GGCGTTTGTTGGAAAAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTG-TGG-GAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* *
4483201 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCAGCCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* * * * *
4483244 GGCGTTTGT-GGACAAGTGCCGCTAAAGATCCAGCCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* * *
4483286 GGCATTTGTGGGACAAGCGCCGCTAAAGGTAAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
4483329 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGC
4483373 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGC
* *
4483417 GGCGTTTGTGGGAAAAACGCCGCTAAAGGTCAAGGCTTTTTAGT
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGC
* *
4483461 GGCGTTTGTGGGAAAAACGCCGCTAAAGGTCAATGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* *
4483504 GGCGTTTGTGTG-AAAGCGCCGCTAAAAGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
4483546 GGCG
1 GGCG
4483550 CTTTTTTTAC
Statistics
Matches: 323, Mismatches: 24, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
42 69 0.21
43 115 0.36
44 131 0.41
45 8 0.02
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (43 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:4483666 original size:31 final size:31
Alignment explanation
Indices: 4483624--4483690 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
4483614 TTTCCTGCAT
* *
4483624 TAAAATCCAGCCAAATACAACAAATATAATA
1 TAAAATCCAGCCAAAAACAACAAATATAACA
* * *
4483655 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAGCCAAAAACAACAAATATAACA
4483686 TAAAA
1 TAAAA
4483691 AATACAACCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.58, C:0.18, G:0.06, T:0.18
Consensus pattern (31 bp):
TAAAATCCAGCCAAAAACAACAAATATAACA
Found at i:4483974 original size:21 final size:21
Alignment explanation
Indices: 4483950--4483995 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
4483940 GCTCGTGCCT
*
4483950 CTGCCTCTCTCGCTGCAGCCG
1 CTGCCTCCCTCGCTGCAGCCG
* * *
4483971 CTGCCTCCCTCTCTGCTGCCT
1 CTGCCTCCCTCGCTGCAGCCG
4483992 CTGC
1 CTGC
4483996 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.50, G:0.20, T:0.28
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCAGCCG
Found at i:4489649 original size:9 final size:9
Alignment explanation
Indices: 4489635--4489867 Score: 143
Period size: 9 Copynumber: 25.6 Consensus size: 9
4489625 TATTTAAGTA
4489635 TTATGTAAG
1 TTATGTAAG
*
4489644 TTATGTAAT
1 TTATGTAAG
*
4489653 TTATGATATG
1 TTATG-TAAG
* * *
4489663 ATATAT-AT
1 TTATGTAAG
*
4489671 TTATGTAAA
1 TTATGTAAG
* *
4489680 TTATAT-AT
1 TTATGTAAG
*
4489688 TTATCTAAG
1 TTATGTAAG
4489697 TTATGTAAG
1 TTATGTAAG
*
4489706 TTATGTAAA
1 TTATGTAAG
*
4489715 TTATGATATAAAA
1 TTATG---T-AAG
*
4489728 TATATTTAAG
1 T-TATGTAAG
4489738 TATTATGTAAG
1 --TTATGTAAG
4489749 TTATGTAAG
1 TTATGTAAG
* *
4489758 TTATAT-AT
1 TTATGTAAG
*
4489766 TTATCTAAG
1 TTATGTAAG
*
4489775 TTATATAAG
1 TTATGTAAG
*
4489784 TTATATAAG
1 TTATGTAAG
*
4489793 TTATGTATG
1 TTATGTAAG
*
4489802 TTATATAAG
1 TTATGTAAG
*
4489811 TTATGTATG
1 TTATGTAAG
*
4489820 TTATATAAG
1 TTATGTAAG
4489829 TTATGTAAG
1 TTATGTAAG
*
4489838 TTA--TATG
1 TTATGTAAG
*
4489845 TTATATAAG
1 TTATGTAAG
*
4489854 TTATGTAAA
1 TTATGTAAG
4489863 TTATG
1 TTATG
4489868 ATATCAAATA
Statistics
Matches: 174, Mismatches: 37, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
7 6 0.03
8 16 0.09
9 128 0.74
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:4489686 original size:17 final size:17
Alignment explanation
Indices: 4489664--4489723 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
4489654 TATGATATGA
4489664 TATATATTTATGTAAAT
1 TATATATTTATGTAAAT
* *
4489681 TATATATTTATCTAAGT
1 TATATATTTATGTAAAT
* *
4489698 TATGTAAGTTATGTAAAT
1 TATAT-ATTTATGTAAAT
4489716 TATGATAT
1 TAT-ATAT
4489724 AAAATATATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
17 19 0.58
18 13 0.39
19 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (17 bp):
TATATATTTATGTAAAT
Found at i:4489805 original size:105 final size:105
Alignment explanation
Indices: 4489611--4489817 Score: 274
Period size: 105 Copynumber: 2.0 Consensus size: 105
4489601 ACTAGTTATG
* * * * *
4489611 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
* *
4489676 TAAATTATATATTTATCTAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATAGTTATCTAAGTTATATAAGTTATGTAAAT
* *
4489716 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
4489779 ATAAGTTATATAAGTTATGTATGTTATATAAGTTATGTA
65 ATAAATTATAT-AGTTATCTAAGTTATATAAGTTATGTA
4489818 TGTTATATAA
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
103 4 0.05
104 18 0.20
105 66 0.75
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (105 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATAGTTATCTAAGTTATATAAGTTATGTAAAT
Found at i:4490221 original size:24 final size:24
Alignment explanation
Indices: 4490189--4490256 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
4490179 ACTTAAACGG
4490189 TAAAACGGACGATAATATTTGTGA
1 TAAAACGGACGATAATATTTGTGA
4490213 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
*
4490237 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
4490257 CAATAATAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:4491237 original size:272 final size:276
Alignment explanation
Indices: 4490548--4491679 Score: 1802
Period size: 272 Copynumber: 4.0 Consensus size: 276
4490538 AAGAAATTTA
* *
4490548 AAAATA-TTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATAT-AAAAAATAGTAATTTAAATATAATAAT
* *
4490612 ATCAAAAATGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATA
65 ATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGG-----------
*
4490677 TTCAATAGTAAATGAGCTCGATAGAATTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
119 -T-AATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
* *
4490742 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGACAACCCGTC
182 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTC
4490807 AGGTTTCCAGCCTATATACTTTGAATCTTT
247 AGGTTTCCAGCCTATATACTTTGAATCTTT
4490837 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTAAATATAATAATA
1 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTAAATATAATAATA
4490902 T-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAA-G-AATAGT-AATG
66 TAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTAATAGTAAATG
4490963 AGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTA
131 AGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTA
*
4491028 CACCTAGGGAGGATCCATTATATCTTGCAACTCGATAT-AGGCAACCCGTCAGGATTCCAGCCTA
196 CACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTA
4491092 TATACTTTGAATCTTT
261 TATACTTTGAATCTTT
*
4491108 AAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAA-ATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATAT-AAAAAATAGTAATTTAAATATAATAAT
*
4491172 AT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAA-G-AATAGTAAAT
65 ATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTAATAGTAAAT
*
4491234 GAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTT
130 GAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTT
4491299 ACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCT
195 ACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCT
4491364 ATATACTTTGAATCTTT
260 ATATACTTTGAATCTTT
*
4491381 AAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTAAATATAATAATA
1 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTAAATATAATAATA
4491446 TAAAAAAAGAATCGTAGTTTAA-TTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATAT
66 TAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGG------------
4491510 TCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAA-TTTTTAAGATTCATCATA
119 T-AATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATA
* *
4491574 CGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCA
183 CGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCA
4491639 GGTTTCCAGCCTATATACTTTGAATCTTT
248 GGTTTCCAGCCTATATACTTTGAATCTTT
4491668 AAAATATTTAAA
1 AAAATATTTAAA
4491680 ATAAGGTTAG
Statistics
Matches: 806, Mismatches: 16, Indels: 44
0.93 0.02 0.05
Matches are distributed among these distances:
271 141 0.17
272 247 0.31
273 121 0.15
274 21 0.03
287 122 0.15
288 91 0.11
289 34 0.04
290 29 0.04
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (276 bp):
AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTAAATATAATAATA
TAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTAATAGTAAATG
AGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTA
CACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTA
TATACTTTGAATCTTT
Found at i:4494739 original size:45 final size:45
Alignment explanation
Indices: 4494669--4494759 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
4494659 AATTAAATTA
** *
4494669 ACCATTATTAACAGGTTTAGTTTCATTTAAGTCATGCATATATAT
1 ACCATTATTAACAGGTTTAACTTCATTTAAGTCAAGCATATATAT
* *
4494714 ACCATTCTTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
1 ACCATTATTAACAGGTTTAACTTCATTTAAGTCAAGCATATATAT
4494759 A
1 A
4494760 TATATATATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (45 bp):
ACCATTATTAACAGGTTTAACTTCATTTAAGTCAAGCATATATAT
Found at i:4494758 original size:2 final size:2
Alignment explanation
Indices: 4494751--4494780 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
4494741 TAAGTCAAGC
*
4494751 AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4494781 TAATGCATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4494817 original size:36 final size:36
Alignment explanation
Indices: 4494777--4494849 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
4494767 ATAAATATAT
* *
4494777 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
4494813 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
4494849 A
1 A
4494850 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:4494887 original size:43 final size:41
Alignment explanation
Indices: 4494840--4494919 Score: 117
Period size: 41 Copynumber: 1.9 Consensus size: 41
4494830 TAATGTTTTG
*
4494840 CTTCATTTAAGTCATGCGCATAA-TGCATATATATTCCATTTAA
1 CTTCATTTAAGTCAT--G-ATAATTGCATATATATACCATTTAA
4494883 CTTCATTTAAGTCATGATAATTGCATATATATACCAT
1 CTTCATTTAAGTCATGATAATTGCATATATATACCAT
4494920 AATTAGCAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
40 4 0.11
41 16 0.46
43 15 0.43
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (41 bp):
CTTCATTTAAGTCATGATAATTGCATATATATACCATTTAA
Found at i:4494908 original size:41 final size:42
Alignment explanation
Indices: 4494817--4494919 Score: 120
Period size: 43 Copynumber: 2.5 Consensus size: 42
4494807 CATTTAATAT
*** **
4494817 TAATGCATATATATAATGTTTTGCTTCATTTAAGTCATGCGCA
1 TAATGCATATATATACCATTTAACTTCATTTAAGTCAT-CGCA
*
4494860 TAATGCATATATATTCCATTTAACTTCATTTAAGTCAT-G-A
1 TAATGCATATATATACCATTTAACTTCATTTAAGTCATCGCA
4494900 TAATTGCATATATATACCAT
1 TAA-TGCATATATATACCAT
4494920 AATTAGCAGG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 4 0.08
41 16 0.31
43 32 0.62
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.42
Consensus pattern (42 bp):
TAATGCATATATATACCATTTAACTTCATTTAAGTCATCGCA
Found at i:4495083 original size:185 final size:186
Alignment explanation
Indices: 4494771--4495151 Score: 710
Period size: 185 Copynumber: 2.1 Consensus size: 186
4494761 ATATATATAA
* **
4494771 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGT
1 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAAAAT
4494836 TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATG-A
66 TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
*
4494900 TAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATAT
131 TAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGCATAT
4494956 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAAAAT
1 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAAAAT
*
4495021 TTTGCTTTATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
66 TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
4495086 TAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGCATAT
131 TAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGCATAT
4495142 ATATATATAT
1 ATATATATAT
4495152 ATATATCACT
Statistics
Matches: 190, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
185 124 0.65
186 66 0.35
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (186 bp):
ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAAAAT
TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
TAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGCATAT
Found at i:4495450 original size:42 final size:43
Alignment explanation
Indices: 4495292--4495674 Score: 617
Period size: 41 Copynumber: 9.1 Consensus size: 43
4495282 AAAAATTTGT
* *
4495292 GGCGTTTGTTGGAAAAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTG-TGG-GAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
4495337 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC-A-GCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
*
4495378 GGCGTTTGT-GGACAAGCGCCGCTAAAGGTCAA-GCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
4495419 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
4495462 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGC
4495506 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTT-GC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
*
4495548 GGCGTTTGTGGGAAAAACGCCGCTAAA-GTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
4495590 GGCGTTTGT-GGAAAA-CGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
*
4495631 GGCGTTTGT--GTAAAGCGCCGCTAAA-GTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
4495671 GGCG
1 GGCG
4495675 CTTTTTTTAC
Statistics
Matches: 325, Mismatches: 6, Indels: 19
0.93 0.02 0.05
Matches are distributed among these distances:
40 53 0.16
41 89 0.27
42 62 0.19
43 67 0.21
44 46 0.14
45 8 0.02
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (43 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:4495521 original size:169 final size:168
Alignment explanation
Indices: 4495292--4495674 Score: 609
Period size: 169 Copynumber: 2.3 Consensus size: 168
4495282 AAAAATTTGT
* *
4495292 GGCGTTTGTTGGAAAAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
1 GGCGTTTG-TGG-GAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
* *
4495357 CGCTAAAGGTC-A-GCTTTTAGCGGCGTTTGT-GGACAAGCGCCGCTAAAGGTCAA-GCTTTTAG
64 CGCTAAAGGTCAAGGCTTTT-GCGGCGTTTGTGGGAAAAACGCCGCTAAA-GTCAAGGCTTTTAG
4495418 CGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
127 CGGCGTTTGT-GGAAAA-CGCCGCTAAAGGTCAAGGCTTTTAGC
4495462 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGCGGCGTTTGTGGGAAAAGCGCC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGTGGGAAAAGCGCC
4495527 GCTAAAGGTCAAGGCTTTTGCGGCGTTTGTGGGAAAAACGCCGCTAAAGTCAAGGCTTTTAGCGG
65 GCTAAAGGTCAAGGCTTTTGCGGCGTTTGTGGGAAAAACGCCGCTAAAGTCAAGGCTTTTAGCGG
4495592 CGTTTGTGGAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
130 CGTTTGTGGAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
*
4495631 GGCGTTTGT--GTAAAGCGCCGCTAAA-GTCAAGGCTTTTAGCGGCG
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
4495675 CTTTTTTTAC
Statistics
Matches: 203, Mismatches: 5, Indels: 15
0.91 0.02 0.07
Matches are distributed among these distances:
165 11 0.05
166 8 0.04
167 15 0.07
168 23 0.11
169 76 0.37
170 31 0.15
171 39 0.19
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (168 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCG
CTAAAGGTCAAGGCTTTTGCGGCGTTTGTGGGAAAAACGCCGCTAAAGTCAAGGCTTTTAGCGGC
GTTTGTGGAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:4495782 original size:31 final size:31
Alignment explanation
Indices: 4495747--4495827 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
4495737 CTTCCTGCAT
* *
4495747 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
4495778 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
4495809 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
4495828 TATTAATTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 26 0.65
33 14 0.35
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:4496097 original size:21 final size:21
Alignment explanation
Indices: 4496073--4496118 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
4496063 GCTCGTGCCT
*
4496073 CTGCCTCTCTCGCTGCAGCCG
1 CTGCCTCCCTCGCTGCAGCCG
* * *
4496094 CTGCCTCCCTCTCTGCTGCCT
1 CTGCCTCCCTCGCTGCAGCCG
4496115 CTGC
1 CTGC
4496119 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.50, G:0.20, T:0.28
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCAGCCG
Found at i:4501769 original size:9 final size:9
Alignment explanation
Indices: 4501755--4501989 Score: 152
Period size: 9 Copynumber: 25.6 Consensus size: 9
4501745 TATTTAAGTA
4501755 TTATGTAAG
1 TTATGTAAG
*
4501764 TTATGTAAT
1 TTATGTAAG
*
4501773 TTATGATATG
1 TTATG-TAAG
* * *
4501783 ATATAT-AT
1 TTATGTAAG
*
4501791 TTATGTAAA
1 TTATGTAAG
* *
4501800 TTATAT-AT
1 TTATGTAAG
*
4501808 TTATCTAAG
1 TTATGTAAG
4501817 TTATGTAAG
1 TTATGTAAG
*
4501826 TTATGTAAA
1 TTATGTAAG
*
4501835 TTATGATATAAAA
1 TTATG---T-AAG
*
4501848 TATATTTAAG
1 T-TATGTAAG
4501858 TATTATGTAAG
1 --TTATGTAAG
4501869 TTATGTAAG
1 TTATGTAAG
* *
4501878 TTATAT-AT
1 TTATGTAAG
*
4501886 TTATCTAAG
1 TTATGTAAG
*
4501895 TTATATAAG
1 TTATGTAAG
*
4501904 TTATATAAG
1 TTATGTAAG
*
4501913 TTATGTATG
1 TTATGTAAG
*
4501922 TTATATAAG
1 TTATGTAAG
*
4501931 TTATGTATG
1 TTATGTAAG
*
4501940 TTATATAAG
1 TTATGTAAG
4501949 TTATGTAAG
1 TTATGTAAG
* *
4501958 TTATATATG
1 TTATGTAAG
*
4501967 TTATATAAG
1 TTATGTAAG
*
4501976 TTATGTAAA
1 TTATGTAAG
4501985 TTATG
1 TTATG
4501990 ATATCAAATA
Statistics
Matches: 177, Mismatches: 38, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
8 16 0.09
9 137 0.77
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:4501806 original size:17 final size:17
Alignment explanation
Indices: 4501784--4501843 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
4501774 TATGATATGA
4501784 TATATATTTATGTAAAT
1 TATATATTTATGTAAAT
* *
4501801 TATATATTTATCTAAGT
1 TATATATTTATGTAAAT
* *
4501818 TATGTAAGTTATGTAAAT
1 TATAT-ATTTATGTAAAT
4501836 TATGATAT
1 TAT-ATAT
4501844 AAAATATATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
17 19 0.58
18 13 0.39
19 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (17 bp):
TATATATTTATGTAAAT
Found at i:4501925 original size:105 final size:105
Alignment explanation
Indices: 4501731--4501937 Score: 274
Period size: 105 Copynumber: 2.0 Consensus size: 105
4501721 ACTAGTTATG
* * * * *
4501731 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
* *
4501796 TAAATTATATATTTATCTAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATAGTTATCTAAGTTATATAAGTTATGTAAAT
* *
4501836 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
4501899 ATAAGTTATATAAGTTATGTATGTTATATAAGTTATGTA
65 ATAAATTATAT-AGTTATCTAAGTTATATAAGTTATGTA
4501938 TGTTATATAA
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
103 4 0.05
104 18 0.20
105 66 0.75
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (105 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATAGTTATCTAAGTTATATAAGTTATGTAAAT
Found at i:4502339 original size:24 final size:24
Alignment explanation
Indices: 4502307--4502373 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
4502297 ACTTAAACGG
4502307 TAAAACGGACGATAATATTTGTGA
1 TAAAACGGACGATAATATTTGTGA
4502331 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
*
4502355 TAAAAC-GACGAGAATATTT
1 TAAAACGGACGATAATATTT
4502374 CAATAATAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
23 11 0.28
24 29 0.73
ACGTcount: A:0.45, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:4503412 original size:273 final size:275
Alignment explanation
Indices: 4502809--4503689 Score: 1484
Period size: 290 Copynumber: 3.2 Consensus size: 275
4502799 GGCAAGTCAA
* *
4502809 GTCAGGTTTCCAACCTCATATACTTTGAATATTTAAAATATTTAAATATTAAAATCAAACATTAT
1 GTCAGGTTTCCAGCCT-ATATACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTAT
*
4502874 TAATAT-AAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATA
65 TAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATA
4502938 AGTAAATTGGAAATAAATTAAGAATAGT-AATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGA
130 AGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGA
4503002 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACT
195 ATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACT
* *
4503067 CGATATGAGGTAA-CC
260 CGATATAAGGCAACCC
* *
4503082 GTCAGGATTCCAGCCTATATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATT
1 GTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTATT
4503147 AATATAAAAAAATAGTAATTTAAATATAAT-A-ATAAAAAAAGAATCGTAGTTTAATTTTTATAA
66 AATATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAA
*
4503210 GTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAA
131 GTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAA
4503275 TTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTC
196 TTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTC
4503340 GATATAAGGCAACCC
261 GATATAAGGCAACCC
*
4503355 GTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATT
1 GTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTATT
4503420 AATATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAA
66 AATATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAA
4503485 GTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTT
131 GTAAATTGGAAATAAATTAA-G--------------AATAGTAAATGAGCTCGATAGAACTTTTT
*
4503550 TCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGACGTTGTTACACCTAGGGAGGATCCAT
181 TCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCAT
*
4503615 TATATCTTGCAGCTCGATATAAGGCAACCC
246 TATATCTTGCAACTCGATATAAGGCAACCC
4503645 GTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAA
1 GTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAA
4503690 ATAAGGTTAG
Statistics
Matches: 575, Mismatches: 13, Indels: 23
0.94 0.02 0.04
Matches are distributed among these distances:
271 59 0.10
272 164 0.29
273 133 0.23
274 1 0.00
275 52 0.09
276 1 0.00
290 165 0.29
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.36
Consensus pattern (275 bp):
GTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTATT
AATATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAA
GTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAA
TTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTC
GATATAAGGCAACCC
Found at i:4507235 original size:3 final size:3
Alignment explanation
Indices: 4507229--4507266 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
4507219 TTTTTCTCTT
4507229 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
4507267 TCCTATTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4507359 original size:28 final size:27
Alignment explanation
Indices: 4507307--4507359 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
4507297 GGTCTCTCTA
*
4507307 ATATATTTAAATTTTAGATTTATTTGC
1 ATATATTTAAATTTTAGATTCATTTGC
*
4507334 ATATACTTTAATTTTTA-ATATCATTT
1 ATATA-TTTAAATTTTAGAT-TCATTT
4507360 AGTCTATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
ATATATTTAAATTTTAGATTCATTTGC
Found at i:4507545 original size:12 final size:12
Alignment explanation
Indices: 4507528--4507560 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
4507518 CATTAATATC
4507528 TATATATATCAA
1 TATATATATCAA
*
4507540 TATATATATCCA
1 TATATATATCAA
4507552 TATATATAT
1 TATATATAT
4507561 ATTATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (12 bp):
TATATATATCAA
Found at i:4508116 original size:40 final size:38
Alignment explanation
Indices: 4508050--4508161 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 38
4508040 ATTTAATCTT
* **
4508050 TTAGTGGCGTTTTTTAAAAAAAGCCGCTAAAGATCG-AGCA
1 TTAGCGGCG-TTTTTAAAAAGCGCCGCTAAAGAT-GTA-CA
* *
4508090 TTAGCGGCGTTTTTCAAAAAGCGCCGCTAAAGGTGTACT
1 TTAGCGGCGTTTTT-AAAAAGCGCCGCTAAAGATGTACA
4508129 TATAGCGGCGTTTCTTAAAAAGCGCCGCTAAAG
1 T-TAGCGGCGTTT-TTAAAAAGCGCCGCTAAAG
4508162 CCACTAAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
39 8 0.13
40 53 0.84
41 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (38 bp):
TTAGCGGCGTTTTTAAAAAGCGCCGCTAAAGATGTACA
Found at i:4508611 original size:36 final size:36
Alignment explanation
Indices: 4508571--4508643 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
4508561 GCTGTAGTGT
* * *
4508571 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
*
4508607 ATATTAAGGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
4508643 A
1 A
4508644 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
Found at i:4508806 original size:36 final size:36
Alignment explanation
Indices: 4508759--4508831 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
4508749 ATATATATAT
* *
4508759 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
4508795 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
4508831 A
1 A
4508832 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:4509484 original size:35 final size:36
Alignment explanation
Indices: 4509423--4509495 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 36
4509413 TTTTATAAGT
4509423 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
4509459 AAGTTACTCCATTG-TTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
4509494 AA
1 AA
4509496 CGCTTTAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 23 0.62
36 14 0.38
ACGTcount: A:0.22, C:0.08, G:0.16, T:0.53
Consensus pattern (36 bp):
AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
Found at i:4512416 original size:21 final size:22
Alignment explanation
Indices: 4512392--4512434 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4512382 TTACATGTAA
* *
4512392 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
4512413 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
4512435 AATTCGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:4513453 original size:12 final size:13
Alignment explanation
Indices: 4513436--4513466 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
4513426 GATTTTGACA
4513436 TTTTTTCGTAT-T
1 TTTTTTCGTATCT
4513448 TTTTTTCGTATCT
1 TTTTTTCGTATCT
4513461 TTTTTT
1 TTTTTT
4513467 AAATATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.06, C:0.10, G:0.06, T:0.77
Consensus pattern (13 bp):
TTTTTTCGTATCT
Found at i:4513559 original size:20 final size:22
Alignment explanation
Indices: 4513520--4513560 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
4513510 TAGTACATAA
4513520 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATATATTATTTAAG
4513542 TGTTTTAAATAT-TT-TTTAA
1 TGTTTTAAATATATTATTTAA
4513561 TAAATAACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 2 0.11
22 12 0.63
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (22 bp):
TGTTTTAAATATATTATTTAAG
Found at i:4513617 original size:13 final size:14
Alignment explanation
Indices: 4513591--4513624 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
4513581 ACTTTATTCA
4513591 TATTTTTTCGTATAT
1 TATTTTTTC-TATAT
4513606 TATTTTTT-TATAT
1 TATTTTTTCTATAT
4513619 TATTTT
1 TATTTT
4513625 AGCAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
15 8 0.42
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (14 bp):
TATTTTTTCTATAT
Found at i:4513839 original size:416 final size:422
Alignment explanation
Indices: 4513330--4514339 Score: 1486
Period size: 446 Copynumber: 2.3 Consensus size: 422
4513320 ATAAGTAAAA
* * * * * *
4513330 TATTTTCGTATATTATTT-TTTATATTATTTTAGCA-AAAATGTTTTAAATGTATTATTATGTAA
1 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATT-T-CAA
4513393 GTATTTTTTTATATTAATTTAATAAATAACACTGATTTTGACATTTTTTCGTATTTTTTTTCGTA
64 -TA-TTTTTTATATTAATTTAATAAATAACACTGATTTTGACATTTTTTCGTA-TTTTTTTCGTA
*
4513458 TCTTTTTTTAAATATATTACTTTCGTATTATTTAATTTTAAAACCCTTATTTTAGTACATAATGT
126 TCTTTTTTTAAATATATTACTTTCATATTATTTAATTTTAAAACCCTTATTTTAGTACATAATGT
4513523 TTTAAATATATTATTTAAGTGTTTTAAATA-TTTTTTAATAAATAACCCTGATTTTACCACTTTA
191 TTTAAATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTACCACTTTA
4513587 TTCATATTTTTTCG-TA-TA-T-TA-T-TT-TTTTATATTATTTTAGCAAAAAATGTTTCAAATG
256 TTCATATTTTTTCGTTATTATTCTATTATTATTTTATATTATTTTAGCAAAAAATGTTTCAAATG
4513645 TATTATGTATATTATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTT
321 TATTATGTATATTATGTAAGTG-TTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTT
4513710 TTTTCGTATTTTTTTGTATCTTATTTTTTAAAATATAT
385 TTTTCGTATTTTTTTGTATCTTATTTTTTAAAATATAT
*
4513748 TATTTTCATATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAATA
1 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAATA
*
4513813 TTTTTTATATTAATTTAATAAATAACACTGATTTTGACACTTTTTCGTATTTTTTTCGTATCTTT
66 TTTTTTATATTAATTTAATAAATAACACTGATTTTGACATTTTTTCGTATTTTTTTCGTATC-TT
4513878 TTTTTAAATATATTACTTTCATATTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTA
130 TTTTTAAATATATTACTTTCATATTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTA
*
4513943 AATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCA
195 AATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTACCACTTTATTCA
4514008 TATTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTATTTTATATTATTTTA
260 TATTTTTTCG-----------------T-TATTA--TT-CTA--TTATTATTTTATATTATTTTA
4514073 GCAAAAAATGTTTCAAATGTATTATGTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATA
302 GCAAAAAATGTTTCAAATGTATTATGTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATA
4514138 ACCCTGATTTTGACACTTTTTTCGTATTTTTTTGTATCTTATTTTTTAAAATATAT
367 ACCCTGATTTTGACACTTTTTTCGTATTTTTTTGTATCTTATTTTTTAAAATATAT
4514194 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAATA
1 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAATA
* * * * *
4514259 TTTTTTATATT-TTTTCAATAAATATCCCTGATTTT-AGCACTTTATTCGTATTTTTTTCGTATA
66 TTTTTTATATTAATTT-AATAAATAACACTGATTTTGA-CA-TTTTTTCGTATTTTTTTCGTATC
4514322 TTATTTTTAAAATATATT
128 TT-TTTTT-AAATATATT
4514340 TTTTTCTTAT
Statistics
Matches: 536, Mismatches: 17, Indels: 48
0.89 0.03 0.08
Matches are distributed among these distances:
415 13 0.02
416 140 0.26
417 49 0.09
418 18 0.03
419 16 0.03
420 20 0.04
436 2 0.00
437 2 0.00
440 1 0.00
442 2 0.00
445 5 0.01
446 178 0.33
447 81 0.15
448 9 0.02
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.55
Consensus pattern (422 bp):
TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAATA
TTTTTTATATTAATTTAATAAATAACACTGATTTTGACATTTTTTCGTATTTTTTTCGTATCTTT
TTTTAAATATATTACTTTCATATTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAA
ATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTACCACTTTATTCAT
ATTTTTTCGTTATTATTCTATTATTATTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTA
TGTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCG
TATTTTTTTGTATCTTATTTTTTAAAATATAT
Found at i:4513844 original size:145 final size:145
Alignment explanation
Indices: 4513654--4514809 Score: 1121
Period size: 145 Copynumber: 7.9 Consensus size: 145
4513644 GTATTATGTA
* * * *
4513654 TATTATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTAT
1 TATTATTTAAGT-ATTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTATTCGTAT
* * *
4513719 TTTTTT-GTATCTTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTCATATTATTTTAGT
65 TTTTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTT-TTTATATTATTTTAGT
4513783 ACATAATGTTTCAAATG
129 ACATAATGTTTCAAATG
*
4513800 TATTATTTCAA-TATTTTTTATATTAATTTAATAAATAACACTGATTTTGACACTTT-TTCGTAT
1 TATTATTT-AAGTATTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTATTCGTAT
* * * * * *
4513863 TTTTTTCGTATCTT-TTTTTT-AAATATATTACTTTCATATTATTTAATTTTAAAACCCTTATTT
65 TTTTTTCGTATATTATTTTTTAAAATATATTATTTTCGTA-T-TTTATTTTTTATA---TTATTT
* *
4513926 TAGTACATAATGTTTTAAATA
125 TAGTACATAATGTTTCAAATG
* ** ** *
4513947 TATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCATA-
1 TATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGATTTTGA-CACTTTATTCGTAT
* *
4514010 TTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTATTTTATATTATTTTAGC
65 TTTTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATT-TTTTATATTATTTTAGT
* *
4514075 AAAAAATGTTTCAAATG
129 ACATAATGTTTCAAATG
*
4514092 TATTATGTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTT
1 TATTAT-T-TA--A-GT-A---TTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTT
* * *
4514157 TTTCGTATTTTTTT-GTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATT
57 ATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTT-TTTATATT
4514221 ATTTTAGTACATAATGTTTCAAATG
121 ATTTTAGTACATAATGTTTCAAATG
* *
4514246 TATTATTTCAA-TATTTTTTATATT-TTTTCAATAAATATCCCTGATTTT-AGCACTTTATTCGT
1 TATTATTT-AAGTATTTTTTATATTAATTT-AATAAATAACCCTGATTTTGA-CACTTTATTCGT
* *
4514308 ATTTTTTTCGTATATTA-TTTTTAAAATATATTTTTTTCTTATTTTATTTTTTATATTATTTTAG
63 ATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAG
* * ***
4514372 CA-AAAAAAATTCAAATG
128 TACATAATGTTTCAAATG
* * * * * *
4514389 TATTAATTAACTGTTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTCT
1 TATTATTTAAGTATTT-TTTATATTAA------TTTAATAAATAACCCTGATTTTGACACTTTAT
*
4514454 TCGTAATTTTTTTATTTTCGTATATTATTTTTTAATATATATTATTTTCGT-TTTTATTTCTTTA
59 TCGT-A----TTT-TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTT-TTTA
*
4514518 TATTATTTTAGTACATAATGCTTCAAATG
117 TATTATTTTAGTACATAATGTTTCAAATG
**
4514547 TATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCGTAT
1 TATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGATTTTGA-CACTTTATTCGTAT
* *
4514611 TTTTTTCGTATATTATTTTTTAAAATATATTATTTTGGTATTTTA--TTTTAGCA-TA----A--
65 TTTTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTA-TATTATTTTAGT
*
4514667 A-ATCA---TTCAAATG
129 ACATAATGTTTCAAATG
* * * * *
4514680 TATTATTTAAGT-TTTTTTATATTAATTTAATAAGTAA-CCTGACTTTGGCACCTTGTTCGTATT
1 TATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTATTCGTA--
** * * * * *
4514743 TTTTTATTTTCAAATTTTATTTTTTTAATTATACTATTTTCATATTTTATTTTTTTATATTATTT
64 --TTT-TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTTATATTATTT
4514808 TA
125 TA
4514810 ACAAAAAACT
Statistics
Matches: 847, Mismatches: 98, Indels: 133
0.79 0.09 0.12
Matches are distributed among these distances:
131 19 0.02
132 22 0.03
133 20 0.02
135 3 0.00
136 38 0.04
137 1 0.00
138 1 0.00
139 8 0.01
142 2 0.00
143 46 0.05
144 53 0.06
145 194 0.23
146 27 0.03
147 92 0.11
148 18 0.02
149 18 0.02
150 31 0.04
151 37 0.04
152 1 0.00
153 3 0.00
154 114 0.13
155 10 0.01
156 21 0.02
157 44 0.05
158 24 0.03
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.56
Consensus pattern (145 bp):
TATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTATTCGTATT
TTTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGTAC
ATAATGTTTCAAATG
Found at i:4513964 original size:22 final size:21
Alignment explanation
Indices: 4513936--4513977 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
4513926 TAGTACATAA
4513936 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATAT-TTATTTAAG
*
4513958 TGTTTTAAATATTTTTTTAA
1 TGTTTTAAATATTTATTTAA
4513978 TAAATAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TGTTTTAAATATTTATTTAAG
Found at i:4514161 original size:446 final size:449
Alignment explanation
Indices: 4513590--4514658 Score: 1414
Period size: 446 Copynumber: 2.4 Consensus size: 449
4513580 CACTTTATTC
*
4513590 ATATT-TTTTCGTATATTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTA
1 ATATTATTTTCGTATTTTA-TTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTA
4513654 TATTATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTAT
65 TATTATGTAAGTG-TTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTAT
*
4513719 TTTTTTGTATCTTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTCATATTATTTTAGTA
129 TTTTTTGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTA
4513784 CATAATGTTTCAAATGTATTATTTCAATATTTTTTATATTAATTT-AATAAATAACACTGATTTT
194 CATAATGTTTCAAATGTATTATTTCAATATTTTTTATATT-ATTTCAATAAATAACACTGATTTT
* *
4513848 -GACACTTT-TTCGTATTTTTTTCGTATCTT-TTTTTTAAATATATTACTTTCATATTATTTAAT
258 AG-CACTTTATTCGTATTTTTTTCGTATATTATTTTTAAAATATATTACTTTCATA-T-TTTAAT
* * *** * * *
4513910 TTTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTATTTAA-GTGT-TTTA-AAT-A-T
320 TTTAAAA---TTATTTTAGCA-AAAAAAATTCAAATATATTAATTAACGTGTCTTTATAATAAGG
4513970 TTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTC-A-TATT-TTTTCGTATATTATTTTTT
381 TTTTTTAATAAATAACCCTGATTTTGA-CACTTTATTCAATTATTATTTTCGTATATTATTTTTT
4514031 AAAAT
445 AAAAT
*
4514036 ATATTATTTTCCTATTTTATTATTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTA
1 ATATTATTTTCGTATTTTATT-TTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTA
4514101 TATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATT
65 TATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATT
4514166 TTTTTGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTAC
130 TTTTTGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTAC
* * *
4514231 ATAATGTTTCAAATGTATTATTTCAATATTTTTTATATTTTTTCAATAAATATCCCTGATTTTAG
195 ATAATGTTTCAAATGTATTATTTCAATATTTTTTATATTATTTCAATAAATAACACTGATTTTAG
** * * *
4514296 CACTTTATTCGTATTTTTTTCGTATATTATTTTTAAAATATATTTTTTTCTTATTTTATTTTTTA
260 CACTTTATTCGTATTTTTTTCGTATATTATTTTTAAAATATATTACTTTCATATTTTAATTTTAA
* * * *
4514361 TATTATTTTAGCAAAAAAAATTCAAATGTATTAATTAACTGTTTCTTTATATTAAGGGTTTTTTA
325 AATTATTTTAGCAAAAAAAATTCAAATATATTAATTAAC-GTGTCTTTATAATAA-GGTTTTTTA
* * * * *
4514426 CTAAATAACCCTGATTTTGATACTTTCTTCGTAATTTTTTTATTTTCGTATATTATTTTTTAATA
388 ATAAATAACCCTGATTTTGACACTTTATTC--AA--TTATTATTTTCGTATATTATTTTTTAAAA
4514491 T
449 T
* * * *
4514492 ATATTATTTTCGT-TTTTATTTCTTTATATTATTTTAGTACATAATGCTTCAAATGTATTAT-T-
1 ATATTATTTTCGTATTTTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTA
* ** *
4514554 TA--A-GT-A---TTTTTTATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCGTAT
65 TATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCTGATTTTGA-CACTTTTTTCGTAT
* *
4514611 TTTTTTCGTATATTATTTTTTAAAATATATTATTTTGGTATTTTATTT
129 TTTTTT-GTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTT
4514659 TAGCATAAAA
Statistics
Matches: 558, Mismatches: 41, Indels: 47
0.86 0.06 0.07
Matches are distributed among these distances:
442 18 0.03
443 10 0.02
444 3 0.01
445 8 0.01
446 248 0.44
447 129 0.23
448 20 0.04
449 33 0.06
450 3 0.01
451 1 0.00
452 1 0.00
453 2 0.00
454 2 0.00
455 45 0.08
456 35 0.06
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (449 bp):
ATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAT
ATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTT
TTTTGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACA
TAATGTTTCAAATGTATTATTTCAATATTTTTTATATTATTTCAATAAATAACACTGATTTTAGC
ACTTTATTCGTATTTTTTTCGTATATTATTTTTAAAATATATTACTTTCATATTTTAATTTTAAA
ATTATTTTAGCAAAAAAAATTCAAATATATTAATTAACGTGTCTTTATAATAAGGTTTTTTAATA
AATAACCCTGATTTTGACACTTTATTCAATTATTATTTTCGTATATTATTTTTTAAAAT
Found at i:4514366 original size:17 final size:16
Alignment explanation
Indices: 4514336--4514370 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
4514326 TTTTAAAATA
*
4514336 TATTTTTTTCTTATTT
1 TATTTTTTTATTATTT
4514352 TATTTTTTATATTATTT
1 TATTTTTT-TATTATTT
4514369 TA
1 TA
4514371 GCAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TATTTTTTTATTATTT
Found at i:4514499 original size:30 final size:28
Alignment explanation
Indices: 4514465--4514524 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 28
4514455 CGTAATTTTT
4514465 TTATTTTCGTATATTATTT-TTTAATATATA
1 TTATTTTCGT-TATTATTTCTTT-ATAT-TA
*
4514495 TTATTTTCGTTTTTATTTCTTTATATTA
1 TTATTTTCGTTATTATTTCTTTATATTA
4514523 TT
1 TT
4514525 TTAGTACATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 4 0.14
29 11 0.39
30 13 0.46
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.68
Consensus pattern (28 bp):
TTATTTTCGTTATTATTTCTTTATATTA
Found at i:4514572 original size:301 final size:286
Alignment explanation
Indices: 4513654--4514659 Score: 1209
Period size: 301 Copynumber: 3.4 Consensus size: 286
4513644 GTATTATGTA
* * * ** *
4513654 TATTATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTT-GACACTTTTTTCGTA
1 TATTATTTAAGT-ATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTA
* *
4513718 TTTTTTT-GTATCTTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTCATATTATTTTAG
64 TTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCATATTTTATTT-TTTATATTATTTTAG
* * * * * *
4513782 TACATAATGTTTCAAATGTATTATTTCAATATTTTTTATATTAATTTAATAAATAACACTGATTT
128 CA-AAAAAGTTTCAAATGTATTAATT-AATGTTTTTTATATTAATTTAATAAATAACCCTGATTT
* * *
4513847 TGACACTTTTTCGTATTTTTTTCGTATCTT-TTTTTTAAATATATTACTTTCATATTATTTAATT
191 TGACACTTTTTCGTATTTTTTTCGTATCTTATTTTTTAAATATATTATTTTC--GTT-TTTATTT
* * *
4513911 -TTAAAACCCTTATTTTAGTACATAATGTTTTAAATA
253 CTTAATA---TTATTTTAGTACATAATGTTTCAAATG
* ** *
4513947 TATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATA-T
1 TATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATT
*
4514011 TTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTATTTTATATTATTTTAGCA
66 TTTTTCGTATATTATTTTTTAAAATATATTATTTTCATATTTTATT-TTTTATATTATTTTAGCA
*
4514076 AAAAATGTTTCAAATGTATTATGTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACC
130 AAAAA-GTTTCAAATG---TA--T-TA--AT-TAA-TGTTTTTTATATTAATTTAATAAATAACC
4514141 CTGATTTTGACACTTTTTTCGTATTTTTTT-GTATCTTATTTTTTAAAATATATTATTTTCGTAT
184 CTGATTTTGACAC-TTTTTCGTATTTTTTTCGTATCTTATTTTTT-AAATATATTATTTTCGT-T
*
4514205 TTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATG
246 TTTATTTCTTAATATTATTTTAGTACATAATGTTTCAAATG
* *
4514246 TATTATTTCAA-TATTTTTTATATTTTTTCAATAAATATCCCTGATTTTAGCACTTTATTCGTAT
1 TATTATTT-AAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTAT
* *
4514310 TTTTTTCGTATATTA-TTTTTAAAATATATTTTTTTCTTATTTTATTTTTTATATTATTTTAGCA
65 TTTTTTCGTATATTATTTTTTAAAATATATTATTTTCATATTTTATTTTTTATATTATTTTAGCA
** *
4514374 AAAAAAATTCAAATGTATTAATTAACTGTTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTG
130 AAAAAGTTTCAAATGTATTAATTAA-TGTTT-TTTATATTAA------TTTAATAAATAACCCTG
* *
4514439 ATTTTGATACTTTCTTCGTAATTTTTTTATTTTCGTATATTATTTTTTAATATATATTATTTTCG
187 ATTTTGACACTTT-TTCGT-A----TTT-TTTTCGTATCTTATTTTTTAA-ATATATTATTTTCG
* *
4514504 TTTTTATTTCTTTATATTATTTTAGTACATAATGCTTCAAATG
244 TTTTTATTTCTTAATATTATTTTAGTACATAATGTTTCAAATG
4514547 TATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATT
1 TATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATT
**
4514612 TTTTTCGTATATTATTTTTTAAAATATATTATTTTGGTATTTTATTTT
66 TTTTTCGTATATTATTTTTTAAAATATATTATTTTCATATTTTATTTT
4514660 AGCATAAAAT
Statistics
Matches: 626, Mismatches: 48, Indels: 69
0.84 0.06 0.09
Matches are distributed among these distances:
288 8 0.01
289 11 0.02
291 11 0.02
292 105 0.17
293 13 0.02
294 5 0.01
295 32 0.05
296 1 0.00
297 9 0.01
298 25 0.04
299 108 0.17
300 25 0.04
301 174 0.28
302 85 0.14
303 14 0.02
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (286 bp):
TATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATT
TTTTTCGTATATTATTTTTTAAAATATATTATTTTCATATTTTATTTTTTATATTATTTTAGCAA
AAAAGTTTCAAATGTATTAATTAATGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACA
CTTTTTCGTATTTTTTTCGTATCTTATTTTTTAAATATATTATTTTCGTTTTTATTTCTTAATAT
TATTTTAGTACATAATGTTTCAAATG
Found at i:4514783 original size:30 final size:31
Alignment explanation
Indices: 4514747--4514805 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
4514737 CGTATTTTTT
4514747 TATTTTCAAATTTTATTTTTTTA-ATTATAC
1 TATTTTCAAATTTTATTTTTTTATATTATAC
*
4514777 TATTTTCATATTTTATTTTTTTATATTAT
1 TATTTTCAAATTTTATTTTTTTATATTAT
4514806 TTTAACAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (31 bp):
TATTTTCAAATTTTATTTTTTTATATTATAC
Found at i:4514789 original size:131 final size:130
Alignment explanation
Indices: 4514539--4514791 Score: 280
Period size: 136 Copynumber: 1.9 Consensus size: 130
4514529 TACATAATGC
** * *
4514539 TTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTA
1 TTCAAATGTATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGACTTTAGCACCTTA
** * *
4514604 TTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTGGTATTTTATTTTAGCATAAAA
66 TTCGTATTTTTTTCAAATATTATTTTTTAAAATATACTATTTT-GCA--TTATTTTAGCATAAAA
4514669 TCA
128 TCA
* * *
4514672 TTCAAATGTATTATTTAAGT-TTTTTTATATTAATTTAATAAGTAA-CCTGACTTTGGCACCTTG
1 TTCAAATGTATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGACTTTAGCACCTTA
* * *
4514735 TTCGTATTTTTTTATTTTCAAATTTTATTTTTTTAATTATACTATTTT-CA-TATTTTA
66 TTCGTA----TTT-TTTTCAAATATTATTTTTTAAAATATACTATTTTGCATTATTTTA
4514792 TTTTTTTATA
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
131 27 0.27
132 22 0.22
133 20 0.20
134 1 0.01
135 3 0.03
136 28 0.28
ACGTcount: A:0.29, C:0.08, G:0.07, T:0.56
Consensus pattern (130 bp):
TTCAAATGTATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGACTTTAGCACCTTA
TTCGTATTTTTTTCAAATATTATTTTTTAAAATATACTATTTTGCATTATTTTAGCATAAAATCA
Found at i:4515263 original size:14 final size:14
Alignment explanation
Indices: 4515244--4515306 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
4515234 AAAAAATTAC
4515244 CTTTTTCTTTCCTT
1 CTTTTTCTTTCCTT
* *
4515258 CTTTTTCCTTCCCT
1 CTTTTTCTTTCCTT
*
4515272 CTTCTTCTTCTCCTTCT
1 CTTTTTCTT-TCC-T-T
4515289 CTTTTTCTTT--TT
1 CTTTTTCTTTCCTT
4515301 CTTTTT
1 CTTTTT
4515307 TCTTCTCTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
12 7 0.17
13 1 0.03
14 19 0.47
15 3 0.08
16 1 0.03
17 9 0.22
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
CTTTTTCTTTCCTT
Found at i:4515277 original size:17 final size:18
Alignment explanation
Indices: 4515255--4515301 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
4515245 TTTTTCTTTC
4515255 CTTCTTTTTCCTTC-CCT
1 CTTCTTTTTCCTTCTCCT
*
4515272 CTTCTTCTTCTCCTTCTCTT
1 CTTCTT-TT-TCCTTCTCCT
*
4515292 TTTCTTTTTC
1 CTTCTTTTTC
4515302 TTTTTTCTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 4 0.16
19 8 0.32
20 7 0.28
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTCTTTTTCCTTCTCCT
Found at i:4515378 original size:8 final size:8
Alignment explanation
Indices: 4515367--4515397 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
4515357 TTCTTCATCT
4515367 CTTCTTCC
1 CTTCTTCC
4515375 CTTCTTCC
1 CTTCTTCC
4515383 CTTCTTCC
1 CTTCTTCC
4515391 CTTCTTC
1 CTTCTTC
4515398 TCTCTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (8 bp):
CTTCTTCC
Found at i:4515378 original size:16 final size:16
Alignment explanation
Indices: 4515359--4515400 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
4515349 TTTCTTTCTT
*
4515359 CTTCATCTCTTCTTCC
1 CTTCTTCTCTTCTTCC
*
4515375 CTTCTTCCCTTCTTCC
1 CTTCTTCTCTTCTTCC
4515391 CTTCTTCTCT
1 CTTCTTCTCT
4515401 CTTTTTCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.02, C:0.45, G:0.00, T:0.52
Consensus pattern (16 bp):
CTTCTTCTCTTCTTCC
Found at i:4515542 original size:27 final size:27
Alignment explanation
Indices: 4515504--4515575 Score: 135
Period size: 27 Copynumber: 2.7 Consensus size: 27
4515494 CCAAAAGCAG
*
4515504 ACACCGGTGCCGCCTCTGCCAGAGGCA
1 ACACTGGTGCCGCCTCTGCCAGAGGCA
4515531 ACACTGGTGCCGCCTCTGCCAGAGGCA
1 ACACTGGTGCCGCCTCTGCCAGAGGCA
4515558 ACACTGGTGCCGCCTCTG
1 ACACTGGTGCCGCCTCTG
4515576 GCACCAACAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.17, C:0.39, G:0.29, T:0.15
Consensus pattern (27 bp):
ACACTGGTGCCGCCTCTGCCAGAGGCA
Found at i:4524582 original size:24 final size:24
Alignment explanation
Indices: 4524554--4524599 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
4524544 CAATTGATGT
* * *
4524554 TCAGATATAGAATTGGATGCATGA
1 TCAGATACAAAATTAGATGCATGA
4524578 TCAGATACAAAATTAGATGCAT
1 TCAGATACAAAATTAGATGCAT
4524600 ACTCAAATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (24 bp):
TCAGATACAAAATTAGATGCATGA
Found at i:4524609 original size:24 final size:24
Alignment explanation
Indices: 4524564--4524610 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
4524554 TCAGATATAG
* *
4524564 AATTGGATGCATGATCAGATACAA
1 AATTAGATGCATGATCAAATACAA
4524588 AATTAGATGCAT-ACTCAAATACA
1 AATTAGATGCATGA-TCAAATACA
4524611 GAATCATATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.26
Consensus pattern (24 bp):
AATTAGATGCATGATCAAATACAA
Found at i:4527985 original size:34 final size:35
Alignment explanation
Indices: 4527874--4528040 Score: 176
Period size: 35 Copynumber: 4.6 Consensus size: 35
4527864 TCCTCATTGA
*** *
4527874 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
4527910 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
4527950 AATACCATA-CTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
4527984 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
4528019 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
4528041 CTTTGCCATG
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
34 12 0.10
35 61 0.53
36 14 0.12
38 1 0.01
39 20 0.17
40 8 0.07
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:4530231 original size:37 final size:36
Alignment explanation
Indices: 4530186--4530256 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 36
4530176 TTCCAACATG
**
4530186 TTTTACTCTCTTCATCTTGTACTTTTCTCTTATTTA
1 TTTTACTCTCCCCATCTTGTACTTTTCTCTTATTTA
4530222 TTTTGACTCTCCCCATCTTGTACTTTTCTCTTATT
1 TTTT-ACTCTCCCCATCTTGTACTTTTCTCTTATT
4530257 AGTGAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 4 0.12
37 28 0.88
ACGTcount: A:0.13, C:0.25, G:0.04, T:0.58
Consensus pattern (36 bp):
TTTTACTCTCCCCATCTTGTACTTTTCTCTTATTTA
Found at i:4532147 original size:43 final size:43
Alignment explanation
Indices: 4532083--4532200 Score: 184
Period size: 43 Copynumber: 2.7 Consensus size: 43
4532073 ATTTATTTTC
4532083 AAGATCAAGTCTCGGTGACCCTTAAAGCAAACATCATTGATTT
1 AAGATCAAGTCTCGGTGACCCTTAAAGCAAACATCATTGATTT
* * *
4532126 AATATCAAGTCTCGGTAACCCTTGAAA-TAAACATCATTGATTT
1 AAGATCAAGTCTCGGTGACCCTT-AAAGCAAACATCATTGATTT
*
4532169 AAGATCAAGTCTCGGTGACCCTTGAAGCAAAC
1 AAGATCAAGTCTCGGTGACCCTTAAAGCAAAC
4532201 CACATCCTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 2 0.03
43 61 0.92
44 3 0.05
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (43 bp):
AAGATCAAGTCTCGGTGACCCTTAAAGCAAACATCATTGATTT
Found at i:4533990 original size:18 final size:18
Alignment explanation
Indices: 4533950--4534001 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
4533940 CAATTTAATT
* *
4533950 TTTTCTTTTTATTTCTTTA
1 TTTTCATTTT-TTTCTTCA
* *
4533969 TTTTCCTTTTTTTCTTCC
1 TTTTCATTTTTTTCTTCA
*
4533987 TTTTTATTTTTTTCT
1 TTTTCATTTTTTTCT
4534002 CTCTTCTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 19 0.68
19 9 0.32
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCATTTTTTTCTTCA
Found at i:4539440 original size:20 final size:20
Alignment explanation
Indices: 4539415--4539452 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4539405 ATATATATAC
*
4539415 AATATAAAAATATATAAAAG
1 AATATAAAAATAAATAAAAG
*
4539435 AATATAAATATAAATAAA
1 AATATAAAAATAAATAAA
4539453 GTGAGTAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
AATATAAAAATAAATAAAAG
Found at i:4539512 original size:12 final size:13
Alignment explanation
Indices: 4539494--4539542 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
4539484 TAAAAATATG
4539494 ATATTTAATAATA
1 ATATTTAATAATA
4539507 AT-TTTAA-AATA
1 ATATTTAATAATA
*
4539518 GTATTTAATATATA
1 ATATTTAATA-ATA
*
4539532 ATATATAATAA
1 ATATTTAATAA
4539543 CAAAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:4539541 original size:24 final size:24
Alignment explanation
Indices: 4539486--4539539 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
4539476 ACTTATAATA
*
4539486 AAAATATGATATTTAATAATAATTTT
1 AAAATA-G-TATTTAATAATAATTAT
4539512 AAAATAGTATTTAATATATAATATAT
1 AAAATAGTATTTAATA-ATAAT-TAT
4539538 AA
1 AA
4539540 TAACAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 9 0.36
25 6 0.24
26 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
AAAATAGTATTTAATAATAATTAT
Found at i:4541173 original size:20 final size:21
Alignment explanation
Indices: 4541143--4541280 Score: 86
Period size: 20 Copynumber: 7.0 Consensus size: 21
4541133 TGCTTTATTT
*
4541143 TTATATTATATATTATATA-A
1 TTATTTTATATATTATATATA
*
4541163 TTGTTTTATATATTAT-TCATA
1 TTATTTTATATATTATAT-ATA
4541184 TTA-TTTATATA-TATTATATA
1 TTATTTTATATATTA-TATATA
*
4541204 TTATTTTCACATA-TATACT-T-
1 TTATTTT-ATATATTATA-TATA
*
4541224 TTATATTATATA-T-TATAT-
1 TTATTTTATATATTATATATA
*
4541242 TTA-TTT-TATATTAT-TATG
1 TTATTTTATATATTATATATA
*
4541260 TCATTTTATACTATTATATAT
1 TTATTTTATA-TATTATATAT
4541281 TTTTATCTAT
Statistics
Matches: 95, Mismatches: 8, Indels: 28
0.73 0.06 0.21
Matches are distributed among these distances:
16 4 0.04
17 7 0.07
18 9 0.09
19 11 0.12
20 38 0.40
21 16 0.17
22 10 0.11
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (21 bp):
TTATTTTATATATTATATATA
Found at i:4541191 original size:13 final size:12
Alignment explanation
Indices: 4541137--4541207 Score: 58
Period size: 13 Copynumber: 5.9 Consensus size: 12
4541127 GTTATTTGCT
4541137 TTATTT-TTATA
1 TTATTTATTATA
*
4541148 TTATATATTATA
1 TTATTTATTATA
* *
4541160 TAATTGTTTTATA
1 TTATT-TATTATA
4541173 -TA-TTATTCATA
1 TTATTTATT-ATA
4541184 TTATTTATATATA
1 TTATTTAT-TATA
*
4541197 TTATATATTAT
1 TTATTTATTAT
4541208 TTTCACATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
10 3 0.06
11 9 0.19
12 14 0.30
13 20 0.43
14 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (12 bp):
TTATTTATTATA
Found at i:4541250 original size:18 final size:18
Alignment explanation
Indices: 4541137--4541295 Score: 101
Period size: 18 Copynumber: 8.4 Consensus size: 18
4541127 GTTATTTGCT
* *
4541137 TTATTTTTATATTATATA
1 TTATATTTATTTTATATA
*
4541155 TTATATAATTGTTTTATATA
1 TTATAT--TTATTTTATATA
4541175 TTATTCATATTATTTATATATA
1 TTA-T-AT-TTATTT-TATATA
*
4541197 TTATATATTATTTTCACATA
1 TTATAT-TTATTTT-ATATA
*
4541217 -TATACTTTTATATTATATA
1 TTATA--TTTATTTTATATA
4541236 TTATATTTATTTTATATTA
1 TTATATTTATTTTATA-TA
* *
4541255 TTAT-GTCATTTTATACTA
1 TTATATTTATTTTATA-TA
* *
4541273 TTATATAT-TTTTATCTA
1 TTATATTTATTTTATATA
4541290 -TATATT
1 TTATATT
4541296 GTTATCATTA
Statistics
Matches: 114, Mismatches: 16, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
16 5 0.04
17 2 0.02
18 36 0.32
19 15 0.13
20 36 0.32
21 9 0.08
22 11 0.10
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (18 bp):
TTATATTTATTTTATATA
Found at i:4541276 original size:8 final size:7
Alignment explanation
Indices: 4541144--4541295 Score: 76
Period size: 7 Copynumber: 21.9 Consensus size: 7
4541134 GCTTTATTTT
4541144 TATATTA
1 TATATTA
4541151 TATATTA
1 TATATTA
*
4541158 TATAATTG
1 TAT-ATTA
4541166 T-T-TTA
1 TATATTA
4541171 TATATTA
1 TATATTA
4541178 TTCATATTA
1 -T-ATATTA
*
4541187 TTTA-TA
1 TATATTA
4541193 TATATTA
1 TATATTA
4541200 TATATTA
1 TATATTA
4541207 T-T-TTCA
1 TATATT-A
*
4541213 CATA-TA
1 TATATTA
4541219 TACT-TT-
1 TA-TATTA
4541225 TATATTA
1 TATATTA
4541232 TATATTA
1 TATATTA
4541239 TAT-TTA
1 TATATTA
4541245 T-T-TTA
1 TATATTA
4541250 TATTATTA
1 TA-TATTA
*
4541258 TGTCATTTTA
1 --T-ATATTA
4541268 TACTATTA
1 TA-TATTA
4541276 TATATT-
1 TATATTA
*
4541282 TTTATCTA
1 TATAT-TA
4541290 TATATT
1 TATATT
4541296 GTTATCATTA
Statistics
Matches: 113, Mismatches: 10, Indels: 44
0.68 0.06 0.26
Matches are distributed among these distances:
5 11 0.10
6 22 0.19
7 48 0.42
8 20 0.18
9 6 0.05
10 5 0.04
11 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (7 bp):
TATATTA
Found at i:4541295 original size:42 final size:41
Alignment explanation
Indices: 4541222--4541300 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
4541212 ACATATATAC
* *
4541222 TTTTATATTATATATTATATTTATTTTATATTATTATGTCA
1 TTTTATACTATATATTATATTTATTATATATTATTATGTCA
* *
4541263 TTTTATACTAT-TATATATTTTTATCTATATATTGTTAT
1 TTTTATACTATATAT-TATATTTAT-TATATATTATTAT
4541301 CATTAAAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 3 0.09
41 18 0.56
42 11 0.34
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (41 bp):
TTTTATACTATATATTATATTTATTATATATTATTATGTCA
Found at i:4541465 original size:21 final size:23
Alignment explanation
Indices: 4541439--4541497 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
4541429 ATCATTAATT
*
4541439 ACTTATTTCATAT-TATTCTA-A
1 ACTTATTTCATATATATTATATA
*
4541460 ACTTATATTTATATATATTATATA
1 ACTTAT-TTCATATATATTATATA
4541484 A-TTATTTCAT-TATA
1 ACTTATTTCATATATA
4541498 AATATAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 10 0.31
22 10 0.31
23 10 0.31
24 2 0.06
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.54
Consensus pattern (23 bp):
ACTTATTTCATATATATTATATA
Found at i:4541570 original size:17 final size:18
Alignment explanation
Indices: 4541550--4541594 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
4541540 TTCTAAACCA
4541550 ATAT-ATTTTTATTCTAT
1 ATATAATTTTTATTCTAT
*
4541567 ATATAATTATTATTCT-T
1 ATATAATTTTTATTCTAT
*
4541584 TTATAATTTTT
1 ATATAATTTTT
4541595 TTTATTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (18 bp):
ATATAATTTTTATTCTAT
Found at i:4541581 original size:18 final size:17
Alignment explanation
Indices: 4541558--4541614 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
4541548 CAATATATTT
4541558 TTATTCTATATATAATTA
1 TTATTCT-TATATAATTA
* *
4541576 TTATTCTTTTATAATTT
1 TTATTCTTATATAATTA
* *
4541593 TTTTTATTATAT-ATTA
1 TTATTCTTATATAATTA
4541609 TATATT
1 T-TATT
4541615 AAATACTATT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
16 4 0.13
17 20 0.65
18 7 0.23
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTCTTATATAATTA
Done.