Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 186 of 410
Found at i:56829045 original size:43 final size:43
Alignment explanation
Indices: 56828997--56829149 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 43
56828987 TAACGAGATG
*
56828997 TGATTATGTGTAAGACCATGTCTGGAACATCGGCATCATTATA
1 TGATTACGTGTAAGACCATGTCTGGAACATCGGCATCATTATA
* * * *
56829040 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCTTTATT
1 TGATTACGTGTAAGACCATGTCTGGAACATCGGCATCATTATA
* ** * *
56829083 TGATTTCAAGTAAGACCATAGT-TGG-GCTATCGGCATCGA-TATG
1 TGATTACGTGTAAGACCAT-GTCTGGAAC-ATCGGCATC-ATTATA
* * *
56829126 TGATAACATGTAAGACCATATCTG
1 TGATTACGTGTAAGACCATGTCTG
56829150 AGATATGGCA
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 2 0.02
43 86 0.96
44 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGAACATCGGCATCATTATA
Found at i:56831450 original size:16 final size:16
Alignment explanation
Indices: 56831429--56831468 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
56831419 GAGCCAAGAA
*
56831429 TTTGTTGAGTGCTTGT
1 TTTGTTCAGTGCTTGT
56831445 TTTGTTCAGTGCTTGT
1 TTTGTTCAGTGCTTGT
56831461 TTTGTTCA
1 TTTGTTCA
56831469 AGATGTTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.07, C:0.10, G:0.25, T:0.57
Consensus pattern (16 bp):
TTTGTTCAGTGCTTGT
Found at i:56835905 original size:49 final size:49
Alignment explanation
Indices: 56835727--56835986 Score: 411
Period size: 49 Copynumber: 5.3 Consensus size: 49
56835717 CCCTTCGGGA
* * *
56835727 CTTATCACATTTATACA-A-TTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
56835774 CCTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
56835821 CTTATCACATATATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
56835874 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
56835923 CTTATCACATGTATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
56835972 CTTATCACATATATA
1 CTTATCACATATATA
56835987 TACCTCATAC
Statistics
Matches: 198, Mismatches: 7, Indels: 14
0.90 0.03 0.06
Matches are distributed among these distances:
47 48 0.24
49 103 0.52
51 10 0.05
52 1 0.01
53 36 0.18
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:56839311 original size:39 final size:39
Alignment explanation
Indices: 56839257--56839409 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
56839247 GAATGTTCGA
*
56839257 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
56839296 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
56839335 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
56839374 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
56839410 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:56839425 original size:40 final size:39
Alignment explanation
Indices: 56839258--56839439 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
56839248 AATGTTCGAG
* *
56839258 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
56839297 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
56839336 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
56839375 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
56839415 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
56839440 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:56847518 original size:55 final size:55
Alignment explanation
Indices: 56847448--56847601 Score: 199
Period size: 55 Copynumber: 2.9 Consensus size: 55
56847438 ATTTCCCAAA
* * * **
56847448 AATATTGCTTCTTTTGGATAGATTGTTTTTATGTTTAAATCGATTGTCATGTTGG
1 AATACTGCTTCTTTTGAATAGATTGTTTATATGTTTAAATCGATTGTCATGTTAC
* *
56847503 AATACTGCTTCTTTTGAATCGATTGTTTATATGTTTAAATTGATTGTCATGTTAC
1 AATACTGCTTCTTTTGAATAGATTGTTTATATGTTTAAATCGATTGTCATGTTAC
*
56847558 AATACT--TT-TTTTAAATCA-ATTGTTTATATGTTTAAATCGATTGT
1 AATACTGCTTCTTTTGAAT-AGATTGTTTATATGTTTAAATCGATTGT
56847602 TACGTAGGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 32 0.36
53 2 0.02
55 54 0.61
ACGTcount: A:0.26, C:0.08, G:0.15, T:0.51
Consensus pattern (55 bp):
AATACTGCTTCTTTTGAATAGATTGTTTATATGTTTAAATCGATTGTCATGTTAC
Found at i:56850867 original size:2 final size:2
Alignment explanation
Indices: 56850860--56850896 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
56850850 CGGTGATGTC
56850860 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
56850897 CTAATTTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:56851072 original size:17 final size:16
Alignment explanation
Indices: 56851031--56851078 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
56851021 TACTTAAGTT
*
56851031 TTTGAAATATAATATA
1 TTTGAAATATAATTTA
*
56851047 TTTGTAATATAATTTAA
1 TTTGAAATATAATTT-A
*
56851064 TTTGAAATAAAATTT
1 TTTGAAATATAATTT
56851079 TAAATCATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTGAAATATAATTTA
Found at i:56851107 original size:13 final size:13
Alignment explanation
Indices: 56851089--56851113 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56851079 TAAATCATTC
56851089 TAAATTTTAAAAA
1 TAAATTTTAAAAA
56851102 TAAATTTTAAAA
1 TAAATTTTAAAA
56851114 CATTTTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAATTTTAAAAA
Found at i:56853894 original size:58 final size:57
Alignment explanation
Indices: 56853768--56853924 Score: 221
Period size: 58 Copynumber: 2.8 Consensus size: 57
56853758 TCTTTAGAGA
* * *
56853768 TGAATAGAAAATATTC-TTGGCGAGAACAATAAACATTCCCTGTAAGAAAAGACGAG
1 TGAATAGGAAATATTCTTTGGCGTGAACAATAAATATTCCCTGTAAGAAAAGACGAG
*
56853824 TGAATAGGAAATATTCTTTGGCGTGAACAATAAGTATTCCCTG-ACGAGAAAAGATC-AG
1 TGAATAGGAAATATTCTTTGGCGTGAACAATAAATATTCCCTGTA--AGAAAAGA-CGAG
*
56853882 TGAATAGGAAATATTCTTTGGCGTGAACAGTAAATATTCCCTG
1 TGAATAGGAAATATTCTTTGGCGTGAACAATAAATATTCCCTG
56853925 GCAAGAACAG
Statistics
Matches: 91, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
56 16 0.18
57 23 0.25
58 51 0.56
59 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (57 bp):
TGAATAGGAAATATTCTTTGGCGTGAACAATAAATATTCCCTGTAAGAAAAGACGAG
Found at i:56853926 original size:23 final size:23
Alignment explanation
Indices: 56853881--56853936 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
56853871 GAAAAGATCA
* **
56853881 GTGAATAGGAAATATTCTTTGGC
1 GTGAACAGGAAATATTCCCTGGC
*
56853904 GTGAACAGTAAATATTCCCTGGC
1 GTGAACAGGAAATATTCCCTGGC
**
56853927 AAGAACAGGA
1 GTGAACAGGA
56853937 GAAATTTCTG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (23 bp):
GTGAACAGGAAATATTCCCTGGC
Found at i:56854275 original size:23 final size:23
Alignment explanation
Indices: 56854164--56854275 Score: 95
Period size: 23 Copynumber: 4.9 Consensus size: 23
56854154 ATATAAACTA
* *
56854164 CAGAGAATATTCACTATTCATGCGC
1 CAGAGAATATTTACTGTTCAT--GC
* **
56854189 CAGAGAAT-CTTACTGTTTTTGC
1 CAGAGAATATTTACTGTTCATGC
56854211 CAGAG-AT-TTCTACTGTTCATGC
1 CAGAGAATATT-TACTGTTCATGC
* * *
56854233 CAGGGAATATTTATTATTCATGC
1 CAGAGAATATTTACTGTTCATGC
*
56854256 CAGAGAATATTTCCTGTTCA
1 CAGAGAATATTTACTGTTCA
56854276 CTCGTTTTTT
Statistics
Matches: 69, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
21 3 0.04
22 21 0.30
23 28 0.41
24 9 0.13
25 8 0.12
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (23 bp):
CAGAGAATATTTACTGTTCATGC
Found at i:56854373 original size:57 final size:57
Alignment explanation
Indices: 56854233--56854390 Score: 246
Period size: 58 Copynumber: 2.8 Consensus size: 57
56854223 CTGTTCATGC
* * *
56854233 CAGGGAATATTTATTATTCATGCCAGAGAATATTTCCTGTTCACTCGTTTTTTCTTG
1 CAGGGAATATTTATTGTTCACGCCAGAGAATATTTCCTGTTCACTCGTTTTTTCTTA
* *
56854290 CTAGGGAATATTTACTGTTCACGCCAGAGAATATTTCCTGTTCACTTGTTTTTTCTTA
1 C-AGGGAATATTTATTGTTCACGCCAGAGAATATTTCCTGTTCACTCGTTTTTTCTTA
56854348 CAGGGAATATTTATTGTTCTA-GCCAGAGAATATTTCCTGTTCA
1 CAGGGAATATTTATTGTTC-ACGCCAGAGAATATTTCCTGTTCA
56854391 TTTTCATTCA
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
57 40 0.43
58 53 0.57
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (57 bp):
CAGGGAATATTTATTGTTCACGCCAGAGAATATTTCCTGTTCACTCGTTTTTTCTTA
Found at i:56856078 original size:3 final size:3
Alignment explanation
Indices: 56856070--56856103 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
56856060 TTACTATTAA
56856070 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
56856104 AAAACAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:56856351 original size:19 final size:20
Alignment explanation
Indices: 56856327--56856364 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
56856317 TGTAATATAT
*
56856327 ATATTTGTTATTA-AATAAG
1 ATATTTATTATTATAATAAG
56856346 ATATTTATTATTATAATAA
1 ATATTTATTATTATAATAA
56856365 TTATTATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
ATATTTATTATTATAATAAG
Found at i:56857124 original size:45 final size:44
Alignment explanation
Indices: 56857027--56857136 Score: 132
Period size: 45 Copynumber: 2.5 Consensus size: 44
56857017 ATGTGCCGAC
* *
56857027 TACTGTTACTGTTACTGTTACGGTTCGACACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTACGGTTAGACACTTTGTATGTCGAA
* * * *
56857071 TACCGTTACAGTTACTGTTACAGATTTAG-CACTTTGTATGTTGAA
1 TACTGTTACTGTTACTGTTAC-G-GTTAGACACTTTGTATGTCGAA
*
56857116 TACTGTTACTGTTACTATTAC
1 TACTGTTACTGTTACTGTTAC
56857137 TGCTACCATT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
44 19 0.35
45 33 0.60
46 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (44 bp):
TACTGTTACTGTTACTGTTACGGTTAGACACTTTGTATGTCGAA
Found at i:56863174 original size:20 final size:19
Alignment explanation
Indices: 56863151--56863192 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
56863141 AGATTATATA
56863151 TATTAT-ATTATATAATTGAT
1 TATTATAATTAT-TAATTG-T
56863171 TATTATAATTATTAATTGT
1 TATTATAATTATTAATTGT
56863190 TAT
1 TAT
56863193 GGTTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 12 0.57
21 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATTATAATTATTAATTGT
Found at i:56863184 original size:3 final size:3
Alignment explanation
Indices: 56863151--56863245 Score: 56
Period size: 3 Copynumber: 32.7 Consensus size: 3
56863141 AGATTATATA
* * * **
56863151 TAT TA- TAT TA- TAT AAT TGAT TAT TAT AAT TAT TAAT TGT TAT GGT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT T-AT TAT TAT TAT
* * * *
56863196 T-T TA- TAT TAT TAT TAG AAT TAT TAT TA- AAT TAT GAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
56863241 TAT TA
1 TAT TA
56863246 AAAGCAAATT
Statistics
Matches: 68, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
2 9 0.13
3 53 0.78
4 6 0.09
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:56863227 original size:23 final size:23
Alignment explanation
Indices: 56863201--56863247 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
56863191 ATGGTTTTAT
*
56863201 ATTATTATTAGAATTATTATTAA
1 ATTATGATTAGAATTATTATTAA
**
56863224 ATTATGATTATTATTATTATTAA
1 ATTATGATTAGAATTATTATTAA
56863247 A
1 A
56863248 AGCAAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATTATGATTAGAATTATTATTAA
Found at i:56863503 original size:3 final size:3
Alignment explanation
Indices: 56863497--56863534 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
56863487 GATATTTATT
56863497 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
56863535 TATTATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:56863539 original size:3 final size:3
Alignment explanation
Indices: 56863533--56863563 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
56863523 AATAATAATA
56863533 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
56863564 AGTTAATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:56864272 original size:45 final size:45
Alignment explanation
Indices: 56864223--56864322 Score: 139
Period size: 45 Copynumber: 2.2 Consensus size: 45
56864213 ACTGTTACTA
* * *
56864223 TTACTGTTACCGATTC-GACACTTTGTGTGTCGAATATTGTTACCG
1 TTACTGTTACAGATTCAG-CACTTTGTGTGTCGAATACTGATACCG
* *
56864268 TTACTATTACAGATTCAGCACTTTGTGTGTTGAATACTGATACCG
1 TTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGATACCG
56864313 TTACTGTTAC
1 TTACTGTTAC
56864323 TTCTACCATT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
45 47 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (45 bp):
TTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGATACCG
Found at i:56866412 original size:25 final size:25
Alignment explanation
Indices: 56866384--56866463 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
56866374 AAGTTCATGT
*
56866384 GAGCCATGTAAT-GGGAAGCTTATCC
1 GAGCCAT-TAATCGGGAAGCTTATAC
* * *
56866409 GAGCTA-TATATCGGGAAGCTCATAA
1 GAGCCATTA-ATCGGGAAGCTTATAC
* *
56866434 GAGCCA-TAATCGAGAAGCTTATGC
1 GAGCCATTAATCGGGAAGCTTATAC
56866458 GAGCCA
1 GAGCCA
56866464 ATAACAAGTA
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
23 2 0.05
24 20 0.45
25 22 0.50
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (25 bp):
GAGCCATTAATCGGGAAGCTTATAC
Found at i:56866461 original size:24 final size:25
Alignment explanation
Indices: 56866398--56866463 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 25
56866388 CATGTAATGG
* * *
56866398 GAAGCTTATCCGAGCTATATATCGG
1 GAAGCTTATACGAGCCATATATCGA
* *
56866423 GAAGCTCATAAGAGCCATA-ATCGA
1 GAAGCTTATACGAGCCATATATCGA
*
56866447 GAAGCTTATGCGAGCCA
1 GAAGCTTATACGAGCCA
56866464 ATAACAAGTA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
24 18 0.55
25 15 0.45
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (25 bp):
GAAGCTTATACGAGCCATATATCGA
Found at i:56872440 original size:43 final size:43
Alignment explanation
Indices: 56872339--56872462 Score: 119
Period size: 43 Copynumber: 2.9 Consensus size: 43
56872329 GATTACCGAG
* * * *
56872339 ATGTGATTACATGTAAGATCCTGTCTGGGACATTGGCATTGTT
1 ATGTGATTACATGTAAGATCCTATCTGGGACAGTGGCATCGAT
* * * * *
56872382 ATAG-GATTTCGTGTAAGATGCTATTTGGGATAGTGGCATCGAT
1 AT-GTGATTACATGTAAGATCCTATCTGGGACAGTGGCATCGAT
*
56872425 ATGTGATTACATGTAAGA-CCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGATCC-TATCTGGGACAGTGGCAT
56872463 TGTATGAGCT
Statistics
Matches: 65, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
42 8 0.12
43 56 0.86
44 1 0.02
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (43 bp):
ATGTGATTACATGTAAGATCCTATCTGGGACAGTGGCATCGAT
Found at i:56874567 original size:25 final size:25
Alignment explanation
Indices: 56874538--56874588 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
56874528 TACTAATTCA
56874538 AAATCATTCATCAATAGGTTTATAT
1 AAATCATTCATCAATAGGTTTATAT
*
56874563 AAATCATTCATCAATAGGTTTTTAT
1 AAATCATTCATCAATAGGTTTATAT
56874588 A
1 A
56874589 CTCTCGACCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (25 bp):
AAATCATTCATCAATAGGTTTATAT
Found at i:56875368 original size:24 final size:24
Alignment explanation
Indices: 56875341--56875386 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
56875331 AAGCTCATGC
*
56875341 GAGCCAATAACGAGTAGCTCCGAA
1 GAGCCAATAACGAGAAGCTCCGAA
* *
56875365 GAGCCATTAACGGGAAGCTCCG
1 GAGCCAATAACGAGAAGCTCCG
56875387 GATCGCTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.26, G:0.28, T:0.13
Consensus pattern (24 bp):
GAGCCAATAACGAGAAGCTCCGAA
Found at i:56879246 original size:13 final size:13
Alignment explanation
Indices: 56879228--56879252 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56879218 TTAAGAGATT
56879228 ATAATATTTTGTC
1 ATAATATTTTGTC
56879241 ATAATATTTTGT
1 ATAATATTTTGT
56879253 TGGAATTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (13 bp):
ATAATATTTTGTC
Found at i:56882313 original size:37 final size:37
Alignment explanation
Indices: 56882263--56882336 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
56882253 AGACTAATGT
56882263 TAGTACCTCCGAACTAGGAAGCATTTTGTAGTTATGG
1 TAGTACCTCCGAACTAGGAAGCATTTTGTAGTTATGG
*
56882300 TAGTACCTCCGAACTAGGAAGCGTTTTGTAGTTATGG
1 TAGTACCTCCGAACTAGGAAGCATTTTGTAGTTATGG
56882337 GTATGAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (37 bp):
TAGTACCTCCGAACTAGGAAGCATTTTGTAGTTATGG
Found at i:56890062 original size:14 final size:15
Alignment explanation
Indices: 56890043--56890077 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
56890033 TGATAAGGCC
56890043 TAATGG-CGATGTGA
1 TAATGGCCGATGTGA
56890057 TAATGGCCGATGTGA
1 TAATGGCCGATGTGA
56890072 TGAATG
1 T-AATG
56890078 TGAAAGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 9 0.47
16 4 0.21
ACGTcount: A:0.29, C:0.09, G:0.34, T:0.29
Consensus pattern (15 bp):
TAATGGCCGATGTGA
Found at i:56890065 original size:63 final size:63
Alignment explanation
Indices: 56889994--56890125 Score: 246
Period size: 63 Copynumber: 2.1 Consensus size: 63
56889984 TGATAAGGCC
56889994 TAATGGCCGATGTAATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCGATGTGA
1 TAATGGCCGATGTAATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCGATGTGA
*
56890057 TAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCGATGTGA
1 TAATGGCCGATGTAATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCGATGTGA
56890120 TGAATG
1 T-AATG
56890126 TGAAAGTGTA
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
63 63 0.94
64 4 0.06
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (63 bp):
TAATGGCCGATGTAATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCGATGTGA
Found at i:56890118 original size:48 final size:47
Alignment explanation
Indices: 56890057--56890289 Score: 303
Period size: 46 Copynumber: 5.0 Consensus size: 47
56890047 GGCGATGTGA
56890057 TAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGG-C
*
56890106 TAATGG-CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 TAATGGCCGATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGGC
56890153 TAATGGCCGATGTGATGAATGTG-AAGGTGTATATATGTGATAAGGC
1 TAATGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGC
* * *
56890199 GAATGGCCAATGTGATGAATGTGAAA-GTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAGG-C
* * * * * * *
56890246 GAGTGGCCAACGTGATGGATGTGGAA-GTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAG
56890290 TCCCGAAGGG
Statistics
Matches: 170, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
46 58 0.34
47 51 0.30
48 55 0.32
49 6 0.04
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGC
Found at i:56890190 original size:25 final size:24
Alignment explanation
Indices: 56890162--56890239 Score: 72
Period size: 25 Copynumber: 3.3 Consensus size: 24
56890152 CTAATGGCCG
56890162 ATGTGATGAATGTGAAGGTGTATAT
1 ATGTGATGAATGTGAA-GTGTATAT
* * ***
56890187 ATGTGAT-AAGGCGAA-TGGCCA-
1 ATGTGATGAATGTGAAGTGTATAT
56890208 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTG-AAGTGTATAT
56890233 ATGTGAT
1 ATGTGAT
56890240 AGGGCCGAGT
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
21 7 0.18
22 7 0.18
23 2 0.05
24 9 0.23
25 14 0.36
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.32
Consensus pattern (24 bp):
ATGTGATGAATGTGAAGTGTATAT
Found at i:56890217 original size:94 final size:93
Alignment explanation
Indices: 56890057--56890289 Score: 310
Period size: 94 Copynumber: 2.5 Consensus size: 93
56890047 GGCGATGTGA
* *
56890057 TAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCGATGTGATG
1 TAATGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCAATGTGATG
56890122 AATGTGAAAGTGTATATATATGTGATAAGG-C
64 AATGTGAAAGTG--TATATATGTGATAAGGCC
56890153 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGG-CGAATGGCCAATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGG-CAATGTGATGA
*
56890217 ATGTGAAAGTGTATATATGTGATAGGGCC
65 ATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
56890246 GAGTGGCCAACGTGATGGATGTGGAA-GTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGT-GAAGGTGTATATATGTGATAAG
56890290 TCCCGAAGGG
Statistics
Matches: 125, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
92 15 0.12
93 41 0.33
94 43 0.34
95 3 0.02
96 23 0.18
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (93 bp):
TAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCAATGTGATGAA
TGTGAAAGTGTATATATGTGATAAGGCC
Found at i:56892176 original size:40 final size:40
Alignment explanation
Indices: 56892049--56892178 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
56892039 ATGCTGGAAA
* *
56892049 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
56892089 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
56892129 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
56892169 TTATATCCGG
1 TTATATCCGG
56892179 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:56900122 original size:40 final size:40
Alignment explanation
Indices: 56900056--56900199 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
56900046 AAATTGAATG
* * *
56900056 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
56900095 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
56900135 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
56900175 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
56900200 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:56900220 original size:40 final size:40
Alignment explanation
Indices: 56900093--56900222 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
56900083 ATGCTGGAAA
* *
56900093 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
56900133 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
56900173 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
56900213 TTATATCCGG
1 TTATATCCGG
56900223 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:56909536 original size:40 final size:40
Alignment explanation
Indices: 56909487--56909654 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
56909477 TCTTCGGAAT
* * *
56909487 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
56909526 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
56909566 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
56909606 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
56909646 TTAGCCCGG
1 TTAGCCCGG
56909655 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:56914199 original size:40 final size:40
Alignment explanation
Indices: 56914144--56914388 Score: 312
Period size: 40 Copynumber: 6.2 Consensus size: 40
56914134 ATGATACCCA
* * *
56914144 GGCTAAGTCCCGAAGGCATTTATGCGAGTTCTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
* *
56914184 GGCTAAGTCCCGAAGGCATTTATGCGAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
* *
56914224 GGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
* *
56914264 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
* *** *
56914304 GGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
* * ** *
56914344 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
56914383 GGCTAA
1 GGCTAA
56914389 ATTCCGAAGA
Statistics
Matches: 182, Mismatches: 23, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
39 5 0.03
40 177 0.97
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
Found at i:56914643 original size:23 final size:24
Alignment explanation
Indices: 56914602--56914648 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
56914592 GAAGTAAGTC
56914602 TGATTATGAGAATGTGTATTAATA
1 TGATTATGAGAATGTGTATTAATA
56914626 TGATTATGAG-ATGTGTATTAATA
1 TGATTATGAGAATGTGTATTAATA
56914649 AAGTGATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (24 bp):
TGATTATGAGAATGTGTATTAATA
Found at i:56922369 original size:40 final size:40
Alignment explanation
Indices: 56922314--56922558 Score: 309
Period size: 40 Copynumber: 6.2 Consensus size: 40
56922304 TGAATGATAC
* *
56922314 CCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
56922354 CCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
56922394 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
56922433 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *** *
56922473 CCGGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * **
56922513 CCGGGTTAAGA-CCGAAGGCAATTGTGCTTG-TGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
56922551 CC-GGCTAA
1 CCGGGCTAA
56922559 ATTCCGAAGA
Statistics
Matches: 183, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
37 5 0.03
38 6 0.03
39 53 0.29
40 119 0.65
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:56922472 original size:79 final size:80
Alignment explanation
Indices: 56922314--56922532 Score: 298
Period size: 79 Copynumber: 2.8 Consensus size: 80
56922304 TGAATGATAC
* * * *
56922314 CCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCA
*
56922379 TGCGAGTTGTTATAT
66 TGCGAGTTGATATAT
* *
56922394 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATA-CCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCA
56922458 TGCGAGTTGATATAT
66 TGCGAGTTGATATAT
* * *** * *
56922473 CCGGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGA-CCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
56922533 ATTGTGCTTG
Statistics
Matches: 123, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 77 0.63
80 46 0.37
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCA
TGCGAGTTGATATAT
Found at i:56922525 original size:119 final size:118
Alignment explanation
Indices: 56922314--56922532 Score: 312
Period size: 119 Copynumber: 1.8 Consensus size: 118
56922304 TGAATGATAC
* * * *
56922314 CCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTA
* *** *
56922379 TGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATA
66 TGCAAGTTACCAAATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTGTTATA
* * *
56922433 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCTGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTA
*
56922498 TGCAAGTTACCAAATCCGGGTTAAGACCGAAGGCA
66 TGCAAGTTACCAAATCCGGGCTAAGACCGAAGGCA
56922533 ATTGTGCTTG
Statistics
Matches: 87, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
118 9 0.10
119 78 0.90
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (118 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTA
TGCAAGTTACCAAATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTTGTTATA
Found at i:56922781 original size:24 final size:24
Alignment explanation
Indices: 56922747--56922812 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
56922737 TGTGTGTGTT
* *
56922747 TATGATGATGA-AGTGTGAAGTAA
1 TATGATTATGAGAATGTGAAGTAA
* *
56922770 GTATGATTATGAGAATGTGTATTAA
1 -TATGATTATGAGAATGTGAAGTAA
56922795 TATGATTATGAGAATGTG
1 TATGATTATGAGAATGTG
56922813 TATTAATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 28 0.76
25 9 0.24
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGATTATGAGAATGTGAAGTAA
Found at i:56922813 original size:24 final size:24
Alignment explanation
Indices: 56922771--56922820 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
56922761 GTGAAGTAAG
56922771 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
56922795 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
56922819 TA
1 TA
56922821 AAGTGATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (24 bp):
TATGATTATGAGAATGTGTATTAA
Found at i:56933949 original size:38 final size:38
Alignment explanation
Indices: 56933907--56934000 Score: 179
Period size: 38 Copynumber: 2.5 Consensus size: 38
56933897 CCTTAGCATA
56933907 GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
1 GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
56933945 GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
1 GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
*
56933983 GATATGTATGTTCGGCCA
1 GATGTGTATGTTCGGCCA
56934001 TAGGTAAGCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.32
Consensus pattern (38 bp):
GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
Found at i:56934689 original size:40 final size:39
Alignment explanation
Indices: 56934599--56934783 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 39
56934589 TCGAATGATG
* *
56934599 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
56934639 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
56934678 TCCCGGGCTAAG-CCCGAAGGCATTTGCGCCAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* *
56934718 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
56934758 ACCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
56934784 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 81 0.66
41 8 0.07
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:56934735 original size:79 final size:81
Alignment explanation
Indices: 56934600--56934783 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
56934590 CGAATGATGT
* *
56934600 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
56934664 GTGCGAGTTACTA-ATC
66 ATGCGAGTTACTATA-A
* * **
56934680 CCGGGCTAAG-CCCGAAGGCATTTGCGC-CAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
56934742 TATGCGAGTTACTATAA
65 TATGCGAGTTACTATAA
* *
56934759 CCGAGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
56934784 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 31 0.34
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
ATGCGAGTTACTATAA
Found at i:56941548 original size:944 final size:944
Alignment explanation
Indices: 56939722--56941548 Score: 2971
Period size: 944 Copynumber: 1.9 Consensus size: 944
56939712 TGAAACGTCG
56939722 GTTTTGGTGGCATGGTATGAAACGAGACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAAC
1 GTTTTGGTGGCATGGTATGAAACGAGACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAAC
* * * * *
56939787 AAGTGAAAGCGGAACATCAAGTGCCTTCAGGATTACTTCAGCCGATCAAGATACCCGAGTGGAAA
66 AAGTAAAAGCGGAACATCAAGTGCCTACAGGATTACTCCAGCCAATCAAGATACCCGAATGGAAA
* * * * *
56939852 TGGGATCGAGTCACAATGGACTTTGTGTCCGGATTGCCATTGTCAGCAAGTAAGAAGGATGCGAT
131 TGGGATCGAGTCACAATGGACTTTGTATCCGGATTGCCAGTATCAGCAAGTAAGAAAGATACGAT
* *
56939917 TTGGGTTATTGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCCGTGCGTACGGATTTTTCAT
196 TTGGGTTATTGTGGATAGACTGACTAAGTCGGCTCACTTTATCCCCGTACGTACGGATTTTTCAT
* * * *
56939982 TGGATAAACTAGCTGAATTGTACGTTTCTCAAATTGGGAGATTACACGGGGTATCGATTTCTGTT
261 TGGATAAACTAGCTGAATTGTACATTTCTCAAATTGGGAGATTACACGGGGTACCGATTTCTATC
56940047 GTGTCGGATAGAGATCCGAGATTCACCTCGCGATTTTGGAAGAAATTGCAAGAAGCTTTGGGTAC
326 GTGTCGGATAGAGATCCGAGATTCACCTCGCGATTTTGGAAGAAATTGCAAGAAGCTTTGGGTAC
** *
56940112 CAATTTGCATTTTAGCACCGCCTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAATTCAGA
391 CAAGCTGCATTTTAGCACCGCCTTTCACCCACAAACCGATGGTCAATCCGAGCGGATAATTCAGA
*
56940177 TACTTGAGGATATGTTGAGATGTTGCATCCTCGAGTTCAGTGGTTCATGGGAACGGTATTTACCT
456 TACTTGAGGATATGTTGAGATGTTGCATCCTCGAGTTCAGTGGTTCATGGGAACGATATTTACCT
*
56940242 TTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCTTT
521 TTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCCTT
* * *
56940307 GTACGGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCGGTGAAAGTAAAATTTTTAGAG
586 GTACGGGCGTAAATGCCATACACCATTGTTTTGGACCGAGCTCGGTGAAAGTAAAATTTTCAGAG
* * *
56940372 TTGATTTGATTAAAGATGCTGAACAGAAAGTAAAGGTAATCCGTGAAAGTCTGAAGGCGGCCACA
651 TGGATTTGATTAAAGATGCTGAACAGAAAGTAAAGATAATCCGTGAAAGTCTGAAGGCAGCCACA
*
56940437 GATCGTCAGAAATCGTACGCGGATTTGAAACGAAAAGACATTGAGTAGCAGGTGGGAGATAAAGT
716 GATCGTCAGAAATCGTACGCGGATTTAAAACGAAAAGACATTGAGTAGCAGGTGGGAGATAAAGT
* **
56940502 GTTTCTTAAAGTTTTGCCTTGGAAAAAGATACTCAGATTTGGCCGTAAGGGCAAGTTGAGCCCGA
781 GTTTCTTAAAGTCTCACCTTGGAAAAAGATACTCAGATTTGGCCGTAAGGGCAAGTTGAGCCCGA
* *
56940567 GATTTATTGGGCCGTACGAAATCTCTGAACGAGTTGGTTCAGAAGTCGTTTGTGTGTTCCAAAGA
846 GATTCATTGGGCCGTACGAAATCTCCGAACGAGTTGGTTCAGAAGTCGTTTGTGTGTTCCAAAGA
56940632 ATTCAGAACTCATTTCGATGATTCTGAGACGCCA
911 ATTCAGAACTCATTTCGATGATTCTGAGACGCCA
* * * *
56940666 GTTTTGGTGGCATGGTATGAAACGAGACATTTCCGATTTTGTTTCGA-AGTGTTTAATATGTTAG
1 GTTTTGGTGGCATGGTATGAAACGAGACATCTCCGACTTTGTTTCGAGA-TGTTTAATATGTCAA
* * * *
56940730 CAAGTAAAAGCGGAACATCAAGTGCCTACGGGTTTACTCCAGCCAATCATGATACCTGAATGGAA
65 CAAGTAAAAGCGGAACATCAAGTGCCTACAGGATTACTCCAGCCAATCAAGATACCCGAATGGAA
* * * *
56940795 ATGGGATCGAGTCACGATGGA-TTTCGTATCTGGGTTGCCAGTATCGGCAAGTAAGAAAGATACG
130 ATGGGATCGAGTCACAATGGACTTT-GTATCCGGATTGCCAGTATCAGCAAGTAAGAAAGATACG
* *
56940859 ATTTGGGTTGTTGTGGATAGACTGACTAAGTCGGCTCACTTTATCCCCGTACGTACTGATTTTTC
194 ATTTGGGTTATTGTGGATAGACTGACTAAGTCGGCTCACTTTATCCCCGTACGTACGGATTTTTC
* * * *
56940924 ATTGGATAAACTAGCTGAATTGTATATTTCTCAGATTGTGAGATTACACGGGGTACCTATTTCTA
259 ATTGGATAAACTAGCTGAATTGTACATTTCTCAAATTGGGAGATTACACGGGGTACCGATTTCTA
*
56940989 TCGTGTCGGATAGAGATCCGAGATTCACCTTGCGATTTTGGAAGAAATTGCAAGAAGCTTTGGGT
324 TCGTGTCGGATAGAGATCCGAGATTCACCTCGCGATTTTGGAAGAAATTGCAAGAAGCTTTGGGT
* *
56941054 ACCAAGCTGCATTTTAGCACCGCTTTTCATCCACAAACCGATGGTCAATCCGAGCGGATAATTCA
389 ACCAAGCTGCATTTTAGCACCGCCTTTCACCCACAAACCGATGGTCAATCCGAGCGGATAATTCA
*
56941119 GATACTTGAGGATATGTTGAGATGTTGCATCCTCGAGTTTAGTGGTTCATGGGAACGATATTTAC
454 GATACTTGAGGATATGTTGAGATGTTGCATCCTCGAGTTCAGTGGTTCATGGGAACGATATTTAC
56941184 C-TTGAATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGC
519 CTTTG-ATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGC
*
56941248 CTTGTACGGGCGTAAATGCCATACACCATTGTTTTGGACCGAGCTCGGTGAAAGTAAAATTTTCG
583 CTTGTACGGGCGTAAATGCCATACACCATTGTTTTGGACCGAGCTCGGTGAAAGTAAAATTTTCA
**
56941313 GAGTGGATTTGATTAAAGATGCTGAACAGAAAGT-AAGAATAATTTGTGAAAGTCTGAAGGCAG-
648 GAGTGGATTTGATTAAAGATGCTGAACAGAAAGTAAAG-ATAATCCGTGAAAGTCTGAAGGCAGC
* * * * *
56941376 CATCAGATCGTCAGAAGTCGTATGCGGATTTAAAACGAAGAGATATTGAGTATCAGGTGGGAGAT
712 CA-CAGATCGTCAGAAATCGTACGCGGATTTAAAACGAAAAGACATTGAGTAGCAGGTGGGAGAT
*
56941441 AAAGTGTTTCTTAAGGTCTCACCTTGGAAAAAGATACTCAGATTTGGCCGTAAGGGCAAGTTGAG
776 AAAGTGTTTCTTAAAGTCTCACCTTGGAAAAAGATACTCAGATTTGGCCGTAAGGGCAAGTTGAG
* * *
56941506 TCGGAGATTCATTGGGCCGTACGAAATTTCCGAACGAGTTGGT
841 CCCGAGATTCATTGGGCCGTACGAAATCTCCGAACGAGTTGGT
56941549 CCAGTTGCAT
Statistics
Matches: 811, Mismatches: 67, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
943 12 0.01
944 799 0.99
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (944 bp):
GTTTTGGTGGCATGGTATGAAACGAGACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAAC
AAGTAAAAGCGGAACATCAAGTGCCTACAGGATTACTCCAGCCAATCAAGATACCCGAATGGAAA
TGGGATCGAGTCACAATGGACTTTGTATCCGGATTGCCAGTATCAGCAAGTAAGAAAGATACGAT
TTGGGTTATTGTGGATAGACTGACTAAGTCGGCTCACTTTATCCCCGTACGTACGGATTTTTCAT
TGGATAAACTAGCTGAATTGTACATTTCTCAAATTGGGAGATTACACGGGGTACCGATTTCTATC
GTGTCGGATAGAGATCCGAGATTCACCTCGCGATTTTGGAAGAAATTGCAAGAAGCTTTGGGTAC
CAAGCTGCATTTTAGCACCGCCTTTCACCCACAAACCGATGGTCAATCCGAGCGGATAATTCAGA
TACTTGAGGATATGTTGAGATGTTGCATCCTCGAGTTCAGTGGTTCATGGGAACGATATTTACCT
TTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCCTT
GTACGGGCGTAAATGCCATACACCATTGTTTTGGACCGAGCTCGGTGAAAGTAAAATTTTCAGAG
TGGATTTGATTAAAGATGCTGAACAGAAAGTAAAGATAATCCGTGAAAGTCTGAAGGCAGCCACA
GATCGTCAGAAATCGTACGCGGATTTAAAACGAAAAGACATTGAGTAGCAGGTGGGAGATAAAGT
GTTTCTTAAAGTCTCACCTTGGAAAAAGATACTCAGATTTGGCCGTAAGGGCAAGTTGAGCCCGA
GATTCATTGGGCCGTACGAAATCTCCGAACGAGTTGGTTCAGAAGTCGTTTGTGTGTTCCAAAGA
ATTCAGAACTCATTTCGATGATTCTGAGACGCCA
Found at i:56947879 original size:27 final size:27
Alignment explanation
Indices: 56947846--56947990 Score: 182
Period size: 27 Copynumber: 5.4 Consensus size: 27
56947836 GGATAAGTTG
*
56947846 TAGAATTACCGAAATACCCCTGTAAGA
1 TAGAATTACCGAAATACCCCTGTAGGA
*
56947873 TAGAATTACCGAAATACCACTGTAGGA
1 TAGAATTACCGAAATACCCCTGTAGGA
* *
56947900 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGA
* * *
56947927 TAGAAATACCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGA
* * * *
56947954 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAGGA
*
56947981 TAAAATTACC
1 TAGAATTACC
56947991 ATTTTGCCCC
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGA
Found at i:56947931 original size:54 final size:54
Alignment explanation
Indices: 56947846--56947991 Score: 202
Period size: 54 Copynumber: 2.7 Consensus size: 54
56947836 GGATAAGTTG
* * * *
56947846 TAGAATTACCGAAATACCCCTGTAAGATAGAATTACCGAAATACCACTGTAGGA
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCACTGTAGGA
* * *
56947900 TAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCACTGTAGGA
* * *
56947954 TAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCA
56947992 TTTTGCCCCT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCACTGTAGGA
Found at i:56948731 original size:2 final size:2
Alignment explanation
Indices: 56948724--56948765 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
56948714 TGGCTTTGCC
*
56948724 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
56948766 TTGTTTTGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:56952044 original size:13 final size:13
Alignment explanation
Indices: 56952026--56952057 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
56952016 TGAGTTCGTA
56952026 AATATTATTATTT
1 AATATTATTATTT
56952039 AATATTATTATTT
1 AATATTATTATTT
56952052 AATATT
1 AATATT
56952058 TATGAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
AATATTATTATTT
Found at i:56953083 original size:87 final size:87
Alignment explanation
Indices: 56952982--56953143 Score: 222
Period size: 87 Copynumber: 1.9 Consensus size: 87
56952972 TAAATTTTAA
* * *
56952982 TACGGGTAGGCCGGGTCTGGCCCAGGTTGTAGCTTTTTATCC-GAGTCGGGC-TTGGACAAAAAT
1 TACGGGTAGGCCGGGTCAGGCCCAGGTTGTAGCTTTTTATCCAG-GTCAGACTTTGG-CAAAAAT
*
56953045 TTAGGGCCATTTACTCTGCCCGAC
64 TTAGGCCCATTTACTCTGCCCGAC
* *
56953069 TACGGG-AGGGCCGGGTCAGGCCCAGGTTTTAGGTTTTTATCCAGGTCAGACTTTGGCAAAAATT
1 TACGGGTA-GGCCGGGTCAGGCCCAGGTTGTAGCTTTTTATCCAGGTCAGACTTTGGCAAAAATT
56953133 TAGGCCCATTT
65 TAGGCCCATTT
56953144 TTCGGGTTAG
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
86 1 0.02
87 60 0.91
88 5 0.08
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (87 bp):
TACGGGTAGGCCGGGTCAGGCCCAGGTTGTAGCTTTTTATCCAGGTCAGACTTTGGCAAAAATTT
AGGCCCATTTACTCTGCCCGAC
Found at i:56953559 original size:18 final size:18
Alignment explanation
Indices: 56953522--56953559 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
56953512 TAAATGATGA
56953522 ATTTAAAGTATTAATTGTT
1 ATTTAAAGTATT-ATTGTT
56953541 ATTTAAAAGTATT-TTGTT
1 ATTT-AAAGTATTATTGTT
56953559 A
1 A
56953560 AGTGATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (18 bp):
ATTTAAAGTATTATTGTT
Found at i:56954212 original size:40 final size:39
Alignment explanation
Indices: 56954157--56954282 Score: 153
Period size: 40 Copynumber: 3.2 Consensus size: 39
56954147 GAAATGAAGA
* * *
56954157 AGTGCCCCTGTTTGTACTTCAGTACCCCTATTTGCATATT
1 AGTG-CCCTGATTGTACTTCAGTACCCCTGTTTGCACATT
* *
56954197 AGTGCCTCTGATTGTACTTCAGTACCCCTGTTTGAACATC
1 AGTGCC-CTGATTGTACTTCAGTACCCCTGTTTGCACATT
* ** *
56954237 AGTGCCCTGGTTGTACTTTGGCACCCCTGTTTGCACATT
1 AGTGCCCTGATTGTACTTCAGTACCCCTGTTTGCACATT
56954276 AGTGCCC
1 AGTGCCC
56954283 CTGTTTGCAC
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
39 36 0.49
40 38 0.51
ACGTcount: A:0.17, C:0.29, G:0.19, T:0.36
Consensus pattern (39 bp):
AGTGCCCTGATTGTACTTCAGTACCCCTGTTTGCACATT
Found at i:56954330 original size:60 final size:59
Alignment explanation
Indices: 56954215--56954345 Score: 172
Period size: 60 Copynumber: 2.2 Consensus size: 59
56954205 TGATTGTACT
* *
56954215 TCAGTACCCCTGTTTGAACATCAGTGCCCTGGTTGTACTTTGGCACCCCTGTTTGCACA
1 TCAGTGCCCCTGTTTGAACATCAGTGCCCTGGTTGTACTTCGGCACCCCTGTTTGCACA
* * * * * * *
56954274 TTAGTGCCCCTGTTTGCACATTAGTGTCCTGGTTTGTACTTCGGTACGCCTGTTTGCATA
1 TCAGTGCCCCTGTTTGAACATCAGTGCCCTGG-TTGTACTTCGGCACCCCTGTTTGCACA
56954334 TCAGTGCCCCTG
1 TCAGTGCCCCTG
56954346 ATTGTACTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
59 27 0.44
60 34 0.56
ACGTcount: A:0.15, C:0.28, G:0.22, T:0.35
Consensus pattern (59 bp):
TCAGTGCCCCTGTTTGAACATCAGTGCCCTGGTTGTACTTCGGCACCCCTGTTTGCACA
Found at i:56954337 original size:99 final size:100
Alignment explanation
Indices: 56954161--56954364 Score: 252
Period size: 99 Copynumber: 2.0 Consensus size: 100
56954151 TGAAGAAGTG
* * *
56954161 CCCCTGTTTGTACTTCAGTACCCCTATTTGCATATTAGTGCCTCTGATTGTACTTCAGTACCCCT
1 CCCCTGTTTGCACTTCAGTACCCCTATTTGCACATTAGTGCCTCGGATTGTACTTCAGTACCCCT
* *
56954226 GTTTGAACATCAGTG-CCCTGGTTGTACTTTGGCA
66 GTTTGAACATCAGTGCCCCTGATTGTACTTTAGCA
* * * * *
56954260 CCCCTGTTTGCACATT-AGTGCCCCTGTTTGCACATTAGTGTCCT-GGTTTGTACTTCGGTACGC
1 CCCCTGTTTGCAC-TTCAGTACCCCTATTTGCACATTAGTG-CCTCGGATTGTACTTCAGTACCC
* * *
56954323 CTGTTTGCATATCAGTGCCCCTGATTGTACTTTAGTA
64 CTGTTTGAACATCAGTGCCCCTGATTGTACTTTAGCA
56954360 CCCCT
1 CCCCT
56954365 AAATGTACAT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
99 63 0.71
100 26 0.29
ACGTcount: A:0.16, C:0.28, G:0.19, T:0.37
Consensus pattern (100 bp):
CCCCTGTTTGCACTTCAGTACCCCTATTTGCACATTAGTGCCTCGGATTGTACTTCAGTACCCCT
GTTTGAACATCAGTGCCCCTGATTGTACTTTAGCA
Found at i:56954363 original size:20 final size:20
Alignment explanation
Indices: 56954161--56954364 Score: 107
Period size: 20 Copynumber: 10.2 Consensus size: 20
56954151 TGAAGAAGTG
56954161 CCCCTGTTTGTACTTCAGTA
1 CCCCTGTTTGTACTTCAGTA
* *
56954181 CCCCTATTTGCATA-TT-AGTG
1 CCCCTGTTTG--TACTTCAGTA
* *
56954201 CCTCTGATTGTACTTCAGTA
1 CCCCTGTTTGTACTTCAGTA
* *
56954221 CCCCTGTTTGAACATCAGT-
1 CCCCTGTTTGTACTTCAGTA
* * ** *
56954240 GCCCTGGTTGTACTTTGGCA
1 CCCCTGTTTGTACTTCAGTA
* *
56954260 CCCCTGTTTGCACATT-AGTG
1 CCCCTGTTTGTAC-TTCAGTA
*
56954280 CCCCTGTTTGCACATT-AGT-
1 CCCCTGTTTGTAC-TTCAGTA
** *
56954299 GTCCTGGTTTGTACTTCGGTA
1 CCCCT-GTTTGTACTTCAGTA
* * *
56954320 CGCCTGTTTGCA-TATCAGTG
1 CCCCTGTTTGTACT-TCAGTA
* *
56954340 CCCCTGATTGTACTTTAGTA
1 CCCCTGTTTGTACTTCAGTA
56954360 CCCCT
1 CCCCT
56954365 AAATGTACAT
Statistics
Matches: 136, Mismatches: 37, Indels: 22
0.70 0.19 0.11
Matches are distributed among these distances:
18 2 0.01
19 20 0.15
20 104 0.76
21 8 0.06
22 2 0.01
ACGTcount: A:0.16, C:0.28, G:0.19, T:0.37
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCAGTA
Found at i:56956392 original size:19 final size:19
Alignment explanation
Indices: 56956368--56956431 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
56956358 TAAGTGTGAT
*
56956368 CAGGGGTATCGAAGTACAA
1 CAGGGGTATCAAAGTACAA
* *
56956387 CAGGGGCAT-ATAAGTACGAT
1 CAGGGGTATCA-AAGTAC-AA
*
56956407 CAGGGGTACCAAAGTACAA
1 CAGGGGTATCAAAGTACAA
*
56956426 TAGGGG
1 CAGGGG
56956432 AACGTAGGTG
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
19 20 0.57
20 14 0.40
21 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.33, T:0.16
Consensus pattern (19 bp):
CAGGGGTATCAAAGTACAA
Found at i:56956714 original size:39 final size:39
Alignment explanation
Indices: 56956320--56956712 Score: 385
Period size: 39 Copynumber: 10.1 Consensus size: 39
56956310 TACGACACAA
* ** *
56956320 AAGTGCGACCAGGGGTACCGAAGTACAACAGGACCATGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * **
56956359 AAGTGTGATCAGGGGTATCGAAGTACAACAGGGGCATAT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * * *
56956398 AAGTACGATCAGGGGTACCAAAGTACAATAGGGGAACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * * ** * *
56956437 AGGTGCAATCAGGGGCACTAAAGTACATCGGGGGCACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* *
56956476 AAGTGCGATTAGGGGTACCGAATTACAACAGGGGCACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * * *
56956515 AAGTGCAATAAGGGGTACTGAAGTACAACAAGGGCACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * * **
56956554 AGGTGCGATCA-GGGTACCAAAATACATTAGGGGCACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * * * *
56956592 AAGTGCAATCAGGGATGCTGAAGTACAACAAGGGCACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * * *
56956631 ATGTGCGATCA-GGGTATCGAAGTACAACAGAGGCAAGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * **
56956669 AAGTGTGATCAGGGGAACCGGGGTACAACAGGGGCACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
56956708 AAGTG
1 AAGTG
56956713 TGGCTAGGGG
Statistics
Matches: 279, Mismatches: 73, Indels: 4
0.78 0.21 0.01
Matches are distributed among these distances:
38 59 0.21
39 220 0.79
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.16
Consensus pattern (39 bp):
AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
Found at i:56958159 original size:50 final size:47
Alignment explanation
Indices: 56958096--56958206 Score: 116
Period size: 50 Copynumber: 2.3 Consensus size: 47
56958086 ATCGGATGAG
* * *
56958096 TTGGCTTCAGGCCACGATATTGGCACTTCGGGTGTGAA-TAATACCTTGAT
1 TTGGCTACAGGCCACGATATAGGCACTTCGGG-AT-AAGT--TACCTTGAT
* * * *
56958146 TTGGCTACGGGCCATGGTATAGGTACTTCGGGATAAGTTACCTTGAT
1 TTGGCTACAGGCCACGATATAGGCACTTCGGGATAAGTTACCTTGAT
56958193 TTGGCTACAGGCCA
1 TTGGCTACAGGCCA
56958207 TGGCATAGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
47 22 0.42
48 2 0.04
49 2 0.04
50 26 0.50
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (47 bp):
TTGGCTACAGGCCACGATATAGGCACTTCGGGATAAGTTACCTTGAT
Found at i:56959644 original size:93 final size:93
Alignment explanation
Indices: 56959532--56959703 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
56959522 CGCCCATAAG
* *
56959532 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56959597 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
56959625 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56959690 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
56959704 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:56959700 original size:46 final size:46
Alignment explanation
Indices: 56959525--56959700 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
56959515 TGTAACCCGC
* * *
56959525 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
56959571 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
56959621 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
56959664 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
56959701 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:56967171 original size:93 final size:93
Alignment explanation
Indices: 56967059--56967230 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
56967049 CGCCCATAAG
* *
56967059 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56967124 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
56967152 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56967217 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
56967231 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:56967227 original size:46 final size:46
Alignment explanation
Indices: 56967052--56967227 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
56967042 TGTAACCCGC
* * *
56967052 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
56967098 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
56967148 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
56967191 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
56967228 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:56974293 original size:45 final size:46
Alignment explanation
Indices: 56974136--56974312 Score: 216
Period size: 46 Copynumber: 3.9 Consensus size: 46
56974126 GGGATATTGG
56974136 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *** * * *
56974182 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA
*
56974228 GGCATCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *
56974274 ACACCCGAGCTCGTTGAGTTGAGTCC-AGTTCACTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
56974313 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
45 40 0.36
46 43 0.39
47 27 0.25
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:56974293 original size:92 final size:92
Alignment explanation
Indices: 56974135--56974304 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 92
56974125 TGGGATATTG
* **
56974135 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
56974200 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCC-AGTTCGAGAGATGTAACTA
* *
56974228 GGCATCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
56974292 TTGAGTCCAGTTC
66 TTGAGTCCAGTTC
56974305 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 5 0.07
92 43 0.60
93 24 0.33
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCAGTTCGAGAGATGTAACTA
Found at i:56976762 original size:40 final size:40
Alignment explanation
Indices: 56976705--56976868 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
56976695 TGAATGATAC
* * * *
56976705 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
56976745 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
56976785 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * * *
56976825 CCGAGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
56976865 CCGG
1 CCGG
56976869 TTGAATCCCG
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.03
40 92 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:56977148 original size:32 final size:33
Alignment explanation
Indices: 56977093--56977155 Score: 103
Period size: 32 Copynumber: 1.9 Consensus size: 33
56977083 TAAGTATGAT
56977093 TATGAGAATGTGTATTAATAAGTGATTCATTGA
1 TATGAGAATGTGTATTAATAAGTGATTCATTGA
56977126 TATGAGAATGT-TATT-ATAAAGTGATTCATT
1 TATGAGAATGTGTATTAAT-AAGTGATTCATT
56977156 TAGTTATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
31 2 0.07
32 16 0.55
33 11 0.38
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.41
Consensus pattern (33 bp):
TATGAGAATGTGTATTAATAAGTGATTCATTGA
Found at i:56984886 original size:40 final size:40
Alignment explanation
Indices: 56984828--56984991 Score: 161
Period size: 40 Copynumber: 4.1 Consensus size: 40
56984818 TGAATGATAC
* ** * *
56984828 CCGGGCTAAGTCTTGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
56984868 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
56984908 CCGGGCTAAGACCCGAATGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
56984948 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
56984988 CCGG
1 CCGG
56984992 TTGAATCCCG
Statistics
Matches: 99, Mismatches: 21, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
39 3 0.03
40 91 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:56985298 original size:36 final size:36
Alignment explanation
Indices: 56985210--56985282 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
56985200 GTGAAGTAAG
56985210 TATGATTATGAGAATGTGTATTAATAAAGTGATTCA
1 TATGATTATGAGAATGTGTATTAATAAAGTGATTCA
56985246 TATGATTATGAGAATGTGTATTAATAAAGTGATTCA
1 TATGATTATGAGAATGTGTATTAATAAAGTGATTCA
56985282 T
1 T
56985283 TTAGTTATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.03, G:0.19, T:0.40
Consensus pattern (36 bp):
TATGATTATGAGAATGTGTATTAATAAAGTGATTCA
Found at i:56988789 original size:43 final size:42
Alignment explanation
Indices: 56988738--56988888 Score: 126
Period size: 43 Copynumber: 3.6 Consensus size: 42
56988728 TCGTACAATG
* * *
56988738 CCAATGTCCCAGACGTGGTCTTACATGTAATCATATCTCGATG
1 CCAATGTCCCAGACGTGGTCTTACACGTAATCAAAT-TCGATA
* ** * *
56988781 CCATTGTCCTGGAC-AGGTCTTACACG-AATCAAATACGATA
1 CCAATGTCCCAGACGTGGTCTTACACGTAATCAAATTCGATA
** * * * *
56988821 CTGATGCCCCAGACATGGTCTTACACGTAATCACATATCAATA
1 CCAATGTCCCAGACGTGGTCTTACACGTAATCAAAT-TCGATA
* *
56988864 CCAATGTCCTAAACGTGGTCTTACA
1 CCAATGTCCCAGACGTGGTCTTACA
56988889 TGAATACACA
Statistics
Matches: 81, Mismatches: 24, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
40 12 0.15
41 18 0.22
42 17 0.21
43 34 0.42
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
CCAATGTCCCAGACGTGGTCTTACACGTAATCAAATTCGATA
Found at i:56991858 original size:51 final size:51
Alignment explanation
Indices: 56991759--56991858 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 51
56991749 TGGATGTGAG
* *
56991759 CATCCGAGCTTGTTGAGTGGTCCAAGTTCATGATGGATGCGATGCATGTAA
1 CATCCGAGCTCGTTGAGTGGTCCAAGTTCATGATGGATGCGATACATGTAA
* * * * *
56991810 CATCCGAGCTCGTTGAGTGGTCCGAGTTCGTTATGGATGTGTTACATGT
1 CATCCGAGCTCGTTGAGTGGTCCAAGTTCATGATGGATGCGATACATGT
56991859 TATGAGGTAG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGTGGTCCAAGTTCATGATGGATGCGATACATGTAA
Found at i:56993876 original size:21 final size:22
Alignment explanation
Indices: 56993850--56993901 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
56993840 GCAGTTAGTG
56993850 TTGAGTTTAGAAAATGA-AAT-A
1 TTGAGTTTAGAAAAT-ACAATCA
*
56993871 TTGAGTTT-GAAAATACAATCG
1 TTGAGTTTAGAAAATACAATCA
56993892 TTGAGTTTAG
1 TTGAGTTTAG
56993902 TTTGGCATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.04
20 9 0.33
21 16 0.59
22 1 0.04
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.37
Consensus pattern (22 bp):
TTGAGTTTAGAAAATACAATCA
Found at i:56994713 original size:35 final size:35
Alignment explanation
Indices: 56994658--56994759 Score: 98
Period size: 35 Copynumber: 2.9 Consensus size: 35
56994648 TTTATCATAG
* * *
56994658 TGGCATGTTTAACATTCGAATCAAAATCAGAATAA
1 TGGCATGCTTAACATGCGAATCAAAATCAAAATAA
* * *
56994693 TGGCATGCTTAGCATGCGAATCATAATTAAAATAA
1 TGGCATGCTTAACATGCGAATCAAAATCAAAATAA
* *
56994728 TAGCATG-TTCAACATCCGAATCAGAATATCAA
1 TGGCATGCTT-AACATGCGAATCA-AA-ATCAA
56994760 TAAATCAATG
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
34 2 0.04
35 46 0.87
36 1 0.02
37 4 0.08
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (35 bp):
TGGCATGCTTAACATGCGAATCAAAATCAAAATAA
Found at i:56996252 original size:21 final size:21
Alignment explanation
Indices: 56996226--56996266 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
56996216 AAGATAAAAT
56996226 ATAAATCACATACGTACATAA
1 ATAAATCACATACGTACATAA
* *
56996247 ATAAATCGCATACGTGCATA
1 ATAAATCACATACGTACATA
56996267 CCTATGTGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.20, G:0.10, T:0.24
Consensus pattern (21 bp):
ATAAATCACATACGTACATAA
Found at i:56999747 original size:28 final size:28
Alignment explanation
Indices: 56999714--56999779 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
56999704 TCATTATTAG
56999714 CCACAAAGGCATCCCTTTCCATAGACCA
1 CCACAAAGGCATCCCTTTCCATAGACCA
* * *
56999742 CCACAAAGACATCCCTTTCCATAGATCG
1 CCACAAAGGCATCCCTTTCCATAGACCA
56999770 CCACAAAGGC
1 CCACAAAGGC
56999780 TTTCATTTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.33, C:0.38, G:0.12, T:0.17
Consensus pattern (28 bp):
CCACAAAGGCATCCCTTTCCATAGACCA
Found at i:56999788 original size:28 final size:28
Alignment explanation
Indices: 56999714--56999818 Score: 99
Period size: 28 Copynumber: 3.8 Consensus size: 28
56999704 TCATTATTAG
* *
56999714 CCACAAAGGCATCCCTTTCCATAGACCA
1 CCACAAAGGCATCCATTTCCATAGATCA
* * *
56999742 CCACAAAGACATCCCTTTCCATAGATCG
1 CCACAAAGGCATCCATTTCCATAGATCA
* *
56999770 CCACAAAGGCTTTCATTT-CA-A-ATACA
1 CCACAAAGGCATCCATTTCCATAGAT-CA
* *
56999796 CCACAAAGGCTTCCATTTTCATA
1 CCACAAAGGCATCCATTTCCATA
56999819 CGTTTCATGA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.03
26 19 0.29
27 4 0.06
28 40 0.62
ACGTcount: A:0.33, C:0.33, G:0.10, T:0.24
Consensus pattern (28 bp):
CCACAAAGGCATCCATTTCCATAGATCA
Found at i:57001126 original size:26 final size:26
Alignment explanation
Indices: 57001090--57001144 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
57001080 ATACTTAATC
57001090 AAATTCTTATACTTTACACTTGCTCA
1 AAATTCTTATACTTTACACTTGCTCA
57001116 AAATTCTTATACTTTACACTTGCTCA
1 AAATTCTTATACTTTACACTTGCTCA
57001142 AAA
1 AAA
57001145 CTTACTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.40
Consensus pattern (26 bp):
AAATTCTTATACTTTACACTTGCTCA
Found at i:57001154 original size:24 final size:25
Alignment explanation
Indices: 57001088--57001156 Score: 97
Period size: 26 Copynumber: 2.8 Consensus size: 25
57001078 TTATACTTAA
*
57001088 TCAAATTCTTATACTTTACACTTGC
1 TCAAAATCTTATACTTTACACTTGC
57001113 TCAAAATTCTTATACTTTACACTTGC
1 TCAAAA-TCTTATACTTTACACTTGC
57001139 TCAAAA-CTTACT-CTTTAC
1 TCAAAATCTTA-TACTTTAC
57001157 GCCTTACTTC
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
24 10 0.24
25 6 0.15
26 25 0.61
ACGTcount: A:0.30, C:0.25, G:0.03, T:0.42
Consensus pattern (25 bp):
TCAAAATCTTATACTTTACACTTGC
Found at i:57001968 original size:13 final size:13
Alignment explanation
Indices: 57001946--57001989 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 13
57001936 TTAATAACCC
57001946 TTTTTTC-TTTCT
1 TTTTTTCTTTTCT
57001958 TTTTTTCCTTTTCTTT
1 TTTTTT-CTTTTC--T
57001974 TTTTTTCTTTTCT
1 TTTTTTCTTTTCT
57001987 TTT
1 TTT
57001990 ATTTTTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
12 6 0.21
13 5 0.18
14 4 0.14
15 6 0.21
16 7 0.25
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTCTTTTCT
Found at i:57001977 original size:15 final size:15
Alignment explanation
Indices: 57001953--57001994 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
57001943 CCCTTTTTTC
57001953 TTTC-TTTTTTTCCT
1 TTTCTTTTTTTTCCT
*
57001967 TTTCTTTTTTTTTCT
1 TTTCTTTTTTTTCCT
57001982 TTTCTTTTATTTT
1 TTTCTTTT-TTTT
57001995 TAAAATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTCTTTTTTTTCCT
Found at i:57014236 original size:15 final size:16
Alignment explanation
Indices: 57014216--57014247 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
57014206 TAATATAAAG
57014216 TGAATTGA-AATATAT
1 TGAATTGAGAATATAT
57014231 TGAATTGAGAATATAT
1 TGAATTGAGAATATAT
57014247 T
1 T
57014248 TGATTAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.41
Consensus pattern (16 bp):
TGAATTGAGAATATAT
Found at i:57014271 original size:20 final size:20
Alignment explanation
Indices: 57014233--57014272 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
57014223 AAATATATTG
*
57014233 AATTGAGAATATATTTGATT
1 AATTGAGAATATATCTGATT
57014253 AATTGA-AATATATACTGATT
1 AATTGAGAATATAT-CTGATT
57014273 GAAAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (20 bp):
AATTGAGAATATATCTGATT
Found at i:57014630 original size:18 final size:18
Alignment explanation
Indices: 57014607--57014702 Score: 122
Period size: 18 Copynumber: 5.3 Consensus size: 18
57014597 TAAATAAAGG
57014607 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* *
57014625 TACTGAATAATTGACTAT
1 TACTGAATAACTGATTAT
* *
57014643 TACTGAATAAAC-GACTGT
1 TACTGAAT-AACTGATTAT
*
57014661 TACTGAATAAATGATTAT
1 TACTGAATAACTGATTAT
*
57014679 TACTGAATAACTGATTAA
1 TACTGAATAACTGATTAT
57014697 TACTGA
1 TACTGA
57014703 TGACTGACTG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
17 2 0.03
18 63 0.94
19 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.35
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:57016698 original size:29 final size:29
Alignment explanation
Indices: 57016670--57016771 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
57016660 CCTCCGAGCT
** * * *
57016670 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
57016699 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
57016728 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
57016757 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
57016772 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:57016761 original size:87 final size:87
Alignment explanation
Indices: 57016613--57016772 Score: 189
Period size: 87 Copynumber: 1.8 Consensus size: 87
57016603 ACTCGATTTC
* * * *
57016613 GCACACTTAGTGCCATGTAATTTAAGCCCGCACACACAGTGCCATACCCTCCGAGCTCGCACACC
1 GCACACTTAGTGCCATATAATTTAAGCACGCACACACAGTGCCATAACCTCCGAGCACGCACACC
57016678 CAGTGCCGTATTTTTCCAGCTT
66 CAGTGCCGTATTTTTCCAGCTT
* ** **
57016700 GCACACTTAGTGCCATAT-ATTTCCAGCACGCACACTTAGTGCCATATATTTCC-AGCACGCACA
1 GCACACTTAGTGCCATATAATTT-AAGCACGCACACACAGTGCCATA-ACCTCCGAGCACGCACA
**
57016763 CTTAGTGCCG
64 CCCAGTGCCG
57016773 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
86 4 0.07
87 53 0.88
88 3 0.05
ACGTcount: A:0.24, C:0.34, G:0.17, T:0.25
Consensus pattern (87 bp):
GCACACTTAGTGCCATATAATTTAAGCACGCACACACAGTGCCATAACCTCCGAGCACGCACACC
CAGTGCCGTATTTTTCCAGCTT
Found at i:57020249 original size:40 final size:40
Alignment explanation
Indices: 57020204--57020370 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
57020194 CGGAATATAA
57020204 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
57020244 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
57020284 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
57020324 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57020363 CCGGATAT
1 CCGGATAT
57020371 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57020354 original size:80 final size:79
Alignment explanation
Indices: 57020204--57020370 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
57020194 CGGAATATAA
* *
57020204 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
57020269 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
57020284 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
57020346 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
57020363 CCGGATAT
1 CCGGATAT
57020371 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:57021218 original size:17 final size:19
Alignment explanation
Indices: 57021195--57021240 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
57021185 AAGAAGCATG
57021195 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
57021213 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
57021231 AATCATGCTC
1 AATCATGCTC
57021241 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:57028221 original size:40 final size:40
Alignment explanation
Indices: 57028176--57028340 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
57028166 CGGAATATAA
57028176 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
57028216 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
57028256 CCGG--ATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
57028294 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57028333 CCGGATAT
1 CCGGATAT
57028341 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 30 0.29
39 14 0.14
40 59 0.57
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57028297 original size:38 final size:37
Alignment explanation
Indices: 57028192--57028300 Score: 128
Period size: 38 Copynumber: 2.8 Consensus size: 37
57028182 ATAATCACGT
* *
57028192 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT--AACAACTA
* *
57028232 GCACGAATGCCTTCGGGCCTTAGCCCGGATAACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAACAACTA
*
57028270 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
57028301 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
37 2 0.03
38 31 0.51
40 28 0.46
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAACAACTA
Found at i:57028324 original size:78 final size:77
Alignment explanation
Indices: 57028192--57028339 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
57028182 ATAATCACGT
*
57028192 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
57028257 CGGATAACCACTA
65 CGGATAACCACTA
* * ** * *
57028270 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
57028333 CCGGATA
64 CCGGATA
57028340 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAACCACTA
Found at i:57029189 original size:17 final size:19
Alignment explanation
Indices: 57029166--57029211 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
57029156 AAGAAGCATG
57029166 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
57029184 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
57029202 AATCATGCTC
1 AATCATGCTC
57029212 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:57036863 original size:40 final size:40
Alignment explanation
Indices: 57036795--57036957 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
57036785 CGGGATTTAA
** *
57036795 CCGGATATAAC-ACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
57036834 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
57036874 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
57036914 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
57036954 CCGG
1 CCGG
57036958 GTATCATTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
39 9 0.09
40 93 0.89
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:57036917 original size:80 final size:79
Alignment explanation
Indices: 57036781--57036957 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 79
57036771 GAATCACGTA
* * * **
57036781 CCTTCGGGATTTA-ACCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
* *
57036845 AACTTGCACAATTG
66 AACTAGCACAAATG
* ** *
57036859 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
57036923 ATCACTAGCATAAATG
64 ATAACTAGCACAAATG
57036939 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
57036958 GTATCATTCA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 11 0.13
79 11 0.13
80 58 0.71
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATG
Found at i:57039211 original size:15 final size:15
Alignment explanation
Indices: 57039176--57039211 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
57039166 ACCAAGATAG
* *
57039176 AGAAACCCAATATAA
1 AGAAATCCAACATAA
57039191 AGAAATCCAACATAA
1 AGAAATCCAACATAA
57039206 AGAAAT
1 AGAAAT
57039212 ACCATATAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.61, C:0.17, G:0.08, T:0.14
Consensus pattern (15 bp):
AGAAATCCAACATAA
Found at i:57039219 original size:30 final size:30
Alignment explanation
Indices: 57039185--57039241 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
57039175 GAGAAACCCA
57039185 ATATAAAGAAATCCAACATAAAGAAATACC
1 ATATAAAGAAATCCAACATAAAGAAATACC
* * * *
57039215 ATATAGAGAAGTCCAAGATAAGGAAAT
1 ATATAAAGAAATCCAACATAAAGAAAT
57039242 TCAAATGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.56, C:0.12, G:0.14, T:0.18
Consensus pattern (30 bp):
ATATAAAGAAATCCAACATAAAGAAATACC
Found at i:57040300 original size:27 final size:26
Alignment explanation
Indices: 57040267--57040376 Score: 157
Period size: 27 Copynumber: 4.1 Consensus size: 26
57040257 CATGGCTGCT
* *
57040267 AGAACAGATAATGTGACAGAGTCACC
1 AGAACAGATAATGTGGCAGAGCCACC
57040293 AGATACAGATAATTGTGGCAGAGCCACC
1 AGA-ACAGATAA-TGTGGCAGAGCCACC
57040321 AGAACAGATATATGTGGCAGAGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACC
*
57040348 AGAACAGATAAATGTGGCATAGCCACC
1 AGAACAGAT-AATGTGGCAGAGCCACC
57040375 AG
1 AG
57040377 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
26 3 0.04
27 56 0.73
28 18 0.23
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.15
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACC
Found at i:57041797 original size:25 final size:24
Alignment explanation
Indices: 57041764--57041820 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 24
57041754 AACTCTTGCT
57041764 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCAGCTCCTAAATCTTCT-C
57041790 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCTTCTC
57041814 CCTTATC
1 CCTTATC
57041821 CCCTCCTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 8 0.26
25 19 0.61
26 4 0.13
ACGTcount: A:0.19, C:0.39, G:0.05, T:0.37
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTCTC
Found at i:57041826 original size:24 final size:25
Alignment explanation
Indices: 57041764--57041827 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
57041754 AACTCTTGCT
*
57041764 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCACCTCCTAAATCTTCTCC
*
57041790 CCTTATCAGCTCCTAAATCTTCT-C
1 CCTTATCACCTCCTAAATCTTCTCC
*
57041814 CCTTATCCCCTCCT
1 CCTTATCACCTCCT
57041828 TACTCAATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 13 0.36
25 19 0.53
26 4 0.11
ACGTcount: A:0.17, C:0.42, G:0.05, T:0.36
Consensus pattern (25 bp):
CCTTATCACCTCCTAAATCTTCTCC
Found at i:57048341 original size:28 final size:29
Alignment explanation
Indices: 57048276--57048351 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 29
57048266 CATGAGATTG
* *
57048276 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTCAAATTATATA
**
57048305 GCACTAAGTGTGCGAGTT-TGATTATATA
1 GCACTAAGTGTGCGAGTTCAAATTATATA
*
57048333 GCACTAAGTGTACGAGTTC
1 GCACTAAGTGTGCGAGTTC
57048352 TACTATTAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
28 24 0.59
29 17 0.41
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCAAATTATATA
Found at i:57055621 original size:28 final size:28
Alignment explanation
Indices: 57055556--57055654 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
57055546 CATGAGATTG
* * * *
57055556 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTC-GACTATATA
* * *
57055585 GCACTAAGTATGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGACTATATA
57055613 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGACTATAT-A
57055641 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
57055655 GGCTTATTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 44 0.72
29 16 0.26
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATATA
Found at i:57057887 original size:27 final size:26
Alignment explanation
Indices: 57057852--57057936 Score: 116
Period size: 27 Copynumber: 3.2 Consensus size: 26
57057842 AACATGGCTG
* *
57057852 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
57057878 TCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
57057906 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
57057933 CCAG
1 CCAG
57057937 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 4 0.08
27 32 0.62
28 16 0.31
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:57058362 original size:8 final size:8
Alignment explanation
Indices: 57058349--57058373 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
57058339 TCTTAAAATG
57058349 TCGGCTTT
1 TCGGCTTT
57058357 TCGGCTTT
1 TCGGCTTT
57058365 TCGGCTTT
1 TCGGCTTT
57058373 T
1 T
57058374 ATCGATCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.24, T:0.52
Consensus pattern (8 bp):
TCGGCTTT
Found at i:57059388 original size:24 final size:25
Alignment explanation
Indices: 57059325--57059381 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
57059315 AACTCTTTCT
*
57059325 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCAACTCCTAAATCTTCTCC
57059351 CCTTATCAACTCCTAAATCTTCT-C
1 CCTTATCAACTCCTAAATCTTCTCC
57059375 CCTTATC
1 CCTTATC
57059382 CCCTCCTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 8 0.27
25 18 0.60
26 4 0.13
ACGTcount: A:0.21, C:0.39, G:0.04, T:0.37
Consensus pattern (25 bp):
CCTTATCAACTCCTAAATCTTCTCC
Found at i:57063042 original size:24 final size:24
Alignment explanation
Indices: 57063006--57063060 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
57062996 ACACCTTCAT
* *
57063006 ATACATATCCACATGAACACATAC
1 ATACATATACACATAAACACATAC
* *
57063030 ATACTTATACACATAAACACATAT
1 ATACATATACACATAAACACATAC
57063054 ATACATA
1 ATACATA
57063061 CCTTCCACAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.25
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:57081887 original size:28 final size:29
Alignment explanation
Indices: 57081789--57081887 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
57081779 TCACAAATTG
* *
57081789 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
57081818 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
57081846 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
57081874 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
57081888 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:57086695 original size:11 final size:11
Alignment explanation
Indices: 57086681--57086706 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
57086671 CATGAGATAT
57086681 TCGAGAAAGTA
1 TCGAGAAAGTA
57086692 TCGAGAAAGTA
1 TCGAGAAAGTA
57086703 TCGA
1 TCGA
57086707 CGTTCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.12, G:0.27, T:0.19
Consensus pattern (11 bp):
TCGAGAAAGTA
Found at i:57086891 original size:42 final size:43
Alignment explanation
Indices: 57086820--57086923 Score: 131
Period size: 42 Copynumber: 2.4 Consensus size: 43
57086810 TATCGACTCA
*
57086820 TGATTTACATGTAGGACCATGTCCGGGACA-TCGGCATCG-TATT
1 TGATTT-CATGTAAGACCATGTCCGGGACAGT-GGCATCGATATT
* * *
57086863 TGATTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATT
1 TGATTTCATGTAAGACCATGTCCGGGACAGTGGCATCGATATT
*
57086906 TGATTACATGTAAGACCA
1 TGATTTCATGTAAGACCA
57086924 CGTCTAGGAC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCCGGGACAGTGGCATCGATATT
Found at i:57086940 original size:43 final size:43
Alignment explanation
Indices: 57086785--57086941 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
57086775 TGTGTTATTG
* *
57086785 TGTAAGACCATGTGTGGGACGTTGGTATCGACTCA--TGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGA-T-ATTTGA-TTACA
* * * * * *
57086829 TGTAGGACCATGTCCGGGACATCGGCATCG-TATTTGATTTCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTACA
*
57086871 TGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGATTACA
* *
57086914 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
57086942 TGTACGAGTT
Statistics
Matches: 90, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 29 0.32
43 36 0.40
44 24 0.27
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:57102932 original size:21 final size:25
Alignment explanation
Indices: 57102907--57102958 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 25
57102897 TTAATGTATC
57102907 TTTGATGA-AA-TT-AAGCATGA-T
1 TTTGATGAGAATTTGAAGCATGAGT
*
57102928 TTTGATGAGAATTTGAAGTATGAGT
1 TTTGATGAGAATTTGAAGCATGAGT
57102953 TTTGAT
1 TTTGAT
57102959 CATGTTAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 8 0.31
22 2 0.08
23 2 0.08
24 7 0.27
25 7 0.27
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (25 bp):
TTTGATGAGAATTTGAAGCATGAGT
Found at i:57110401 original size:48 final size:46
Alignment explanation
Indices: 57110239--57110411 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
57110229 TGATATGTGT
* * ** *
57110239 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCA-CATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGCATCAAGACGAGA
* *
57110285 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGA
** *
57110331 GCTAGTGTAAGACATGTCTGGGACATGCATCGGTGTCAAGA-TATGCAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGA-G--A
*
57110379 GCTAGTGTAAGACCTGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCG
57110412 TCTTAGATAT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
45 4 0.04
46 73 0.67
48 26 0.24
49 6 0.06
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGA
Found at i:57113553 original size:80 final size:80
Alignment explanation
Indices: 57113469--57113617 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
57113459 TATGGTAACC
* * * *
57113469 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
57113533 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
57113549 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
57113614 CCGG
66 CCGG
57113618 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:57113559 original size:40 final size:38
Alignment explanation
Indices: 57113510--57113617 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
57113500 ATCACGATTT
*
57113510 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
57113550 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
57113590 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
57113618 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:57122807 original size:23 final size:25
Alignment explanation
Indices: 57122761--57122807 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
57122751 AGGAGTGTGG
* *
57122761 GGATTGTTGTGGCCGAATTTTAGGA
1 GGATTGTTGTGGCAGAAGTTTAGGA
57122786 GGATT-TTGTGG-AGAAGTTTAGG
1 GGATTGTTGTGGCAGAAGTTTAGG
57122808 GATAGGTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 6 0.30
25 5 0.25
ACGTcount: A:0.21, C:0.04, G:0.38, T:0.36
Consensus pattern (25 bp):
GGATTGTTGTGGCAGAAGTTTAGGA
Found at i:57124861 original size:38 final size:38
Alignment explanation
Indices: 57124819--57124912 Score: 188
Period size: 38 Copynumber: 2.5 Consensus size: 38
57124809 CCTTAGCATA
57124819 GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
1 GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
57124857 GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
1 GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
57124895 GATGTGTATGTTCGGCCA
1 GATGTGTATGTTCGGCCA
57124913 TAGGTAAGCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.32
Consensus pattern (38 bp):
GATGTGTATGTTCGGCCACATGAATGAGTACATAAGTT
Found at i:57125646 original size:79 final size:81
Alignment explanation
Indices: 57125511--57125694 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
57125501 TCGAATGATG
*
57125511 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
57125575 GTGCGAATTACTA-ATC
66 ATGCGAATTACTATA-A
* * **
57125591 CCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
*
57125653 TATGCGAGTTACTATAA
65 TATGCGAATTACTATAA
*
57125670 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57125695 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 32 0.35
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
ATGCGAATTACTATAA
Found at i:57125701 original size:40 final size:39
Alignment explanation
Indices: 57125511--57125694 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
57125501 TCGAATGATG
* * *
57125511 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
57125551 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAATTACTAATC
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
57125591 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57125629 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57125670 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57125695 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Done.