Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 190 of 410
Found at i:58039807 original size:46 final size:46
Alignment explanation
Indices: 58039712--58039808 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 46
58039702 GAAAACGATT
** * *
58039712 GAGCT-AAACAGTAAGCTCTTTTGAGCTAAATCAGTAAGCTCCAAT
1 GAGCTGAAACAGTAAGCTCTTACGAGCTAAATCAGTAAACTCCAAC
* * *
58039757 GAGCTGAAATAGTAAGCTCTTACGAGCTGAGTCAGTAAACT-CATAC
1 GAGCTGAAACAGTAAGCTCTTACGAGCTAAATCAGTAAACTCCA-AC
58039803 GAGCTG
1 GAGCTG
58039809 TGGTGAATCC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
45 7 0.16
46 36 0.84
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (46 bp):
GAGCTGAAACAGTAAGCTCTTACGAGCTAAATCAGTAAACTCCAAC
Found at i:58043182 original size:30 final size:30
Alignment explanation
Indices: 58043141--58043202 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
58043131 GACACATGAG
*
58043141 TAAGTCGTTTCCATCTAAGTCTAAGAAATC
1 TAAGTCATTTCCATCTAAGTCTAAGAAATC
58043171 TAAGTCATTTCCATCTAAGTCTAAGAAATC
1 TAAGTCATTTCCATCTAAGTCTAAGAAATC
58043201 TA
1 TA
58043203 GAGAGATGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.34
Consensus pattern (30 bp):
TAAGTCATTTCCATCTAAGTCTAAGAAATC
Found at i:58048613 original size:31 final size:31
Alignment explanation
Indices: 58048578--58048641 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
58048568 CCTTTTCATG
58048578 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
58048609 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
58048640 TT
1 TT
58048642 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:58048884 original size:24 final size:24
Alignment explanation
Indices: 58048833--58048975 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
58048823 GCTTTATCAT
*
58048833 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
58048858 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
58048882 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
58048905 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
58048929 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
58048953 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
58048976 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:58048912 original size:47 final size:48
Alignment explanation
Indices: 58048833--58048974 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
58048823 GCTTTATCAT
* *
58048833 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
58048882 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
58048929 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
58048975 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:58048933 original size:71 final size:72
Alignment explanation
Indices: 58048832--58048975 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
58048822 TGCTTTATCA
*
58048832 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
58048897 GCCCTTT
66 GCCCTTT
* * **
58048904 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
58048967 AGCCCTTT
65 AGCCCTTT
58048975 T
1 T
58048976 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:58049050 original size:20 final size:20
Alignment explanation
Indices: 58049025--58049085 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
58049015 TTACGATTAC
58049025 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
58049045 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
58049065 CTTATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
58049085 A
1 A
58049086 CCATATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:58049157 original size:25 final size:25
Alignment explanation
Indices: 58049129--58049176 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
58049119 ATACATAAAC
* * *
58049129 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
58049154 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
58049177 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:58050442 original size:27 final size:27
Alignment explanation
Indices: 58050413--58050749 Score: 418
Period size: 27 Copynumber: 12.6 Consensus size: 27
58050403 TGGTATTTTA
* * *
58050413 GTAATTTTGTAAATCGGGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58050440 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58050467 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58050494 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58050521 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58050548 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58050575 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
58050601 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
58050628 GTAATTCTGTAAA-CTGA-GGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
58050654 GTAATTCTGTAAAT-GAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58050680 GTAATT-T-TACTAATCGAGGGTAAAACG
1 GTAATTCTGTA--AATCGAGGGTAAAACG
* *
58050707 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
58050734 GTAATTCTATAAATCG
1 GTAATTCTGTAAATCG
58050750 GGAGTACTTT
Statistics
Matches: 273, Mismatches: 26, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
24 2 0.01
25 3 0.01
26 65 0.24
27 198 0.73
28 4 0.01
29 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:58053571 original size:31 final size:31
Alignment explanation
Indices: 58053536--58053599 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
58053526 CTTTTTCATG
58053536 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
58053567 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
58053598 TT
1 TT
58053600 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:58053842 original size:24 final size:24
Alignment explanation
Indices: 58053791--58053909 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
58053781 GCTTTATCAT
*
58053791 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
58053816 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
58053840 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
58053863 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
58053887 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
58053910 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 21 0.24
24 53 0.62
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:58053870 original size:47 final size:47
Alignment explanation
Indices: 58053816--58053908 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
58053806 GCCTCTTTTA
58053816 ATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCCTTTG
1 ATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCCTTTG
* **
58053863 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCCTTT
58053909 TTCACTTCCT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (47 bp):
ATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCCTTTG
Found at i:58053984 original size:20 final size:20
Alignment explanation
Indices: 58053959--58054019 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
58053949 TTATGATTAC
58053959 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
58053979 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
58053999 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
58054019 A
1 A
58054020 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:58055380 original size:27 final size:27
Alignment explanation
Indices: 58055352--58055691 Score: 414
Period size: 27 Copynumber: 12.6 Consensus size: 27
58055342 GGGTATTTTA
* * * **
58055352 GTAATTTTATAAATCGGGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58055379 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58055406 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58055433 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58055460 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58055487 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58055514 GTAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
58055541 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
58055568 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
58055595 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * ** **
58055622 ATAATTTTACAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58055649 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
58055676 GTAATTCTATAAATCG
1 GTAATTCTGTAAATCG
58055692 GGAGTACTTT
Statistics
Matches: 273, Mismatches: 36, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.01
27 265 0.97
28 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:58057747 original size:29 final size:30
Alignment explanation
Indices: 58057693--58057758 Score: 116
Period size: 29 Copynumber: 2.2 Consensus size: 30
58057683 TCGCACACCC
*
58057693 AGTGCCATATTTTTTCCAGCATGCACACTT
1 AGTGCCATATTATTTCCAGCATGCACACTT
58057723 AGTGCCATA-TATTTCCAGCATGCACACTT
1 AGTGCCATATTATTTCCAGCATGCACACTT
58057752 AGTGCCA
1 AGTGCCA
58057759 ATCTCGTCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 26 0.74
30 9 0.26
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (30 bp):
AGTGCCATATTATTTCCAGCATGCACACTT
Found at i:58065575 original size:30 final size:29
Alignment explanation
Indices: 58065540--58065613 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
58065530 CTTCGAGCTC
* *
58065540 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
58065570 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
58065599 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
58065614 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:58066814 original size:21 final size:20
Alignment explanation
Indices: 58066772--58066825 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
58066762 AATGAACACT
*
58066772 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
*
58066790 TTTTTCTTCATATTCTCTTTT
1 TTTTTCTTCAT-TTCTCTTTG
*
58066811 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
58066826 TTATTCTTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.27
19 1 0.03
20 6 0.20
21 15 0.50
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:58072541 original size:37 final size:37
Alignment explanation
Indices: 58072500--58072576 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
58072490 TTAAATGAAG
*
58072500 TGAACATTGTGATGTATGTTATTTATATGAAGCAAAA
1 TGAACATTGTGATGTATGTTATTTATATGAAGAAAAA
58072537 TGAACATTGTGATGTATGTTATTTATATGAAGAAAAA
1 TGAACATTGTGATGTATGTTATTTATATGAAGAAAAA
58072574 TGA
1 TGA
58072577 TGTATGACTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.38
Consensus pattern (37 bp):
TGAACATTGTGATGTATGTTATTTATATGAAGAAAAA
Found at i:58075708 original size:44 final size:44
Alignment explanation
Indices: 58075655--58075742 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
58075645 ATTAAGAAAT
58075655 CCTTATTACACTTAAAACCCAAAACCATAAA-AATAATTAAAAGG
1 CCTTATTACACTTAAAACCCAAAACCATAAATAA-AATTAAAAGG
*
58075699 CCTTATTACACTTAAAACCCAAAACCATAAATGAAATTAAAAGG
1 CCTTATTACACTTAAAACCCAAAACCATAAATAAAATTAAAAGG
58075743 ACGTCCAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.51, C:0.20, G:0.06, T:0.23
Consensus pattern (44 bp):
CCTTATTACACTTAAAACCCAAAACCATAAATAAAATTAAAAGG
Found at i:58076189 original size:55 final size:56
Alignment explanation
Indices: 58076124--58076238 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
58076114 AGCATGGCTG
* *
58076124 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGAGAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGC-GTAGCCA
* * *
58076180 CCAGA-ACAGAGATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCGTAGCCA
1 CCAGATACAGAGAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCGTAGCCA
58076235 CCAG
1 CCAG
58076239 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 2 0.04
55 28 0.54
56 22 0.42
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (56 bp):
CCAGATACAGAGAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCGTAGCCA
Found at i:58076234 original size:28 final size:28
Alignment explanation
Indices: 58076149--58076238 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
58076139 GTGACAGAGT
*
58076149 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
* * *
58076178 CACCAGAACAGA-GATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
58076205 CACCAGAACAGATAATTTGTGGC-GTAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
58076233 CACCAG
1 CACCAG
58076239 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 24 0.46
28 21 0.40
29 7 0.13
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:58076391 original size:28 final size:28
Alignment explanation
Indices: 58076344--58076408 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
58076334 AAATTAACCC
* *
58076344 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCACACA
* *
58076372 TAGGGGTATAATGGTAATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTAGCACACA
58076400 TAGGGGTAT
1 TAGGGGTAT
58076409 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCACACA
Found at i:58083516 original size:19 final size:19
Alignment explanation
Indices: 58083480--58083518 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
58083470 TTTTCATCAT
* *
58083480 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
58083499 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
58083518 A
1 A
58083519 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:58084016 original size:55 final size:56
Alignment explanation
Indices: 58083951--58084065 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
58083941 AGCATGGCTG
* *
58083951 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
58084007 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
58084062 CCAG
1 CCAG
58084066 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:58084028 original size:27 final size:27
Alignment explanation
Indices: 58083976--58084065 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
58083966 GTGACAGAGT
58083976 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
58084005 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
58084032 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
58084060 CACCAG
1 CACCAG
58084066 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:58084218 original size:28 final size:28
Alignment explanation
Indices: 58084171--58084235 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
58084161 AAATTAACCC
*
58084171 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* * *
58084199 TAGGGGTATAATGGTAATTTTGCATATA
1 TAGGGGTATAAAGGTAATTTAGCATACA
58084227 TAGGGGTAT
1 TAGGGGTAT
58084236 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:58087397 original size:29 final size:29
Alignment explanation
Indices: 58087354--58087560 Score: 222
Period size: 29 Copynumber: 7.1 Consensus size: 29
58087344 TATCAACTAG
* **
58087354 CATCGATTAATGAAAAGGGATGGTGACGAC
1 CATCGAAT-ATGAAAAGGGATGGTTTCGAC
*
58087384 CATCGAATATGAAAAAGGATGGTTTCGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
* * *
58087413 CATCGAACATGAAAAGGGATAGTGAT-GAC
1 CATCGAATATGAAAAGGGATGGT-TTCGAC
** *
58087442 CATCGAAT-TGAAAAGGGATGGTGACAAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
* *
58087470 AATCTAATATGAAAAGGGATGGTTTCGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
* *
58087499 CATTGAATATGAAAAAGGAT-GTTTCGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
* *
58087527 CATCGATTAAAGAAAAGGGATGGTTTCGAC
1 CATCGAAT-ATGAAAAGGGATGGTTTCGAC
58087557 CATC
1 CATC
58087561 ATTTAGCACA
Statistics
Matches: 146, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
28 35 0.24
29 91 0.62
30 20 0.14
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.23
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATGGTTTCGAC
Found at i:58089078 original size:22 final size:22
Alignment explanation
Indices: 58089053--58089136 Score: 85
Period size: 22 Copynumber: 4.1 Consensus size: 22
58089043 TATAAGATTA
58089053 AATTGATGTATGATTTGTGACC
1 AATTGATGTATGATTTGTGACC
58089075 AATTG-TG-AT-ATGTT-T-A--
1 AATTGATGTATGAT-TTGTGACC
*
58089091 AATTGATGTATGATTTATG-CC
1 AATTGATGTATGATTTGTGACC
58089112 AAATTGATGTATGATTTGTGACC
1 -AATTGATGTATGATTTGTGACC
58089135 AA
1 AA
58089137 ATGTGCACAA
Statistics
Matches: 51, Mismatches: 1, Indels: 20
0.71 0.01 0.28
Matches are distributed among these distances:
16 5 0.10
17 2 0.04
18 5 0.10
19 6 0.12
20 4 0.08
21 2 0.04
22 25 0.49
23 2 0.04
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (22 bp):
AATTGATGTATGATTTGTGACC
Found at i:58090555 original size:48 final size:48
Alignment explanation
Indices: 58090503--58090676 Score: 296
Period size: 48 Copynumber: 3.6 Consensus size: 48
58090493 TGATCCCGTA
*
58090503 TAAGACCATGTCTGGGACATGGCATCGGCATCATTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* * *
58090551 TAAGACCATGTCTAGGACATGGCATCGACATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
58090599 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
*
58090647 TAAGACCATGTCTGGGATAT-GCATCGGCAT
1 TAAGACCATGTCTGGGACATGGCATCGGCAT
58090677 GAGGCATCGT
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
47 10 0.08
48 108 0.92
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
Found at i:58094189 original size:12 final size:12
Alignment explanation
Indices: 58094172--58094199 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
58094162 AGCTTATAGA
58094172 CAAATTTTATGT
1 CAAATTTTATGT
58094184 CAAATTTTATGT
1 CAAATTTTATGT
58094196 CAAA
1 CAAA
58094200 AATAAACCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (12 bp):
CAAATTTTATGT
Found at i:58095536 original size:45 final size:45
Alignment explanation
Indices: 58095450--58095611 Score: 154
Period size: 45 Copynumber: 3.7 Consensus size: 45
58095440 CTACTATCCT
* * *
58095450 AGACAGGGTCTTACACG-AATCA-A-ATAT-GATACCGATGTCCC
1 AGACATGGTCTTACACGAAAACACATATATCGATACCAATGTCCC
* * *
58095491 AGACATGGTCTTACACGTAACCACATATATCGATACCAACGTCCC
1 AGACATGGTCTTACACGAAAACACATATATCGATACCAATGTCCC
** * * *
58095536 AGATGTGGTCTTACTCAAAAACACATATATC-AGTGCCAATGTCCC
1 AGACATGGTCTTACACGAAAACACATATATCGA-TACCAATGTCCC
** *
58095581 AGATGTGGTCTTACTCGAAAACACATATATC
1 AGACATGGTCTTACACGAAAACACATATATC
58095612 ATAATCCTAC
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 16 0.16
42 4 0.04
43 1 0.01
44 5 0.05
45 77 0.75
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (45 bp):
AGACATGGTCTTACACGAAAACACATATATCGATACCAATGTCCC
Found at i:58095612 original size:45 final size:46
Alignment explanation
Indices: 58095477--58095612 Score: 177
Period size: 45 Copynumber: 3.0 Consensus size: 46
58095467 AATCAAATAT
* ** * * *
58095477 GATACCGATGTCCCAGACATGGTCTTACACGTAACCACATATATC-
1 GATACCAATGTCCCAGATGTGGTCTTACTCGAAAACACATATATCA
* *
58095522 GATACCAACGTCCCAGATGTGGTCTTACTCAAAAACACATATATCA
1 GATACCAATGTCCCAGATGTGGTCTTACTCGAAAACACATATATCA
*
58095568 G-TGCCAATGTCCCAGATGTGGTCTTACTCGAAAACACATATATCA
1 GATACCAATGTCCCAGATGTGGTCTTACTCGAAAACACATATATCA
58095613 TAATCCTACG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 78 0.99
46 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (46 bp):
GATACCAATGTCCCAGATGTGGTCTTACTCGAAAACACATATATCA
Found at i:58100516 original size:48 final size:48
Alignment explanation
Indices: 58100464--58100638 Score: 278
Period size: 48 Copynumber: 3.6 Consensus size: 48
58100454 TGATCCCGTC
**
58100464 TAAGACCATGTCTGGGACATGGCATCAACATCGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* *
58100512 TAAGACCATGTCTGGGACATGGGATCGGCATCGTTATGCGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* * *
58100560 TAAGACCATGTCTGGAACATGGCACCGGCATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
*
58100608 TAAGACCATGTTTGGGACATGGCATCGGCAT
1 TAAGACCATGTCTGGGACATGGCATCGGCAT
58100639 AAGGCATAGT
Statistics
Matches: 115, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
Found at i:58105339 original size:49 final size:49
Alignment explanation
Indices: 58105284--58105455 Score: 258
Period size: 49 Copynumber: 3.6 Consensus size: 49
58105274 TATTAAAATT
*
58105284 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
58105333 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * *
58105382 TGTGAAAGTGTGTATATATGTGATAAGGCCTAGTGGCCAACGTGATGGA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
58105431 TGTGGAAGTGTATA-A-ATGTGATAAG
1 TGTGAAAGTGTATATATATGTGATAAG
58105456 TCCCGAAGGG
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 10 0.09
48 1 0.01
49 102 0.90
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:58111902 original size:30 final size:30
Alignment explanation
Indices: 58111846--58111902 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
58111836 ACACCAGGGA
* * *
58111846 ACACACGGCTGTGTAACATGGCCATGTGTC
1 ACACACGGCTGAGAAACATCGCCATGTGTC
58111876 ACACACGGCTGAGAAACA-CGCTCATGT
1 ACACACGGCTGAGAAACATCGC-CATGT
58111903 CCCCACCCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 2 0.09
30 21 0.91
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (30 bp):
ACACACGGCTGAGAAACATCGCCATGTGTC
Found at i:58117150 original size:28 final size:29
Alignment explanation
Indices: 58117118--58117232 Score: 112
Period size: 29 Copynumber: 4.0 Consensus size: 29
58117108 TACCTGTATC
*
58117118 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
58117146 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAAGCCCAAATCACAT-TCATA
* *
58117175 TGGCCGATT-AGACCCAAATCACATTTATA
1 TGGCCCATTAAG-CCCAAATCACATTCATA
* * *
58117204 TGGCTCATTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
58117232 T
1 T
58117233 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
28 28 0.39
29 41 0.58
30 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:58117175 original size:29 final size:29
Alignment explanation
Indices: 58117112--58117219 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
58117102 TTCACATACC
* * *
58117112 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
58117140 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
* *
58117169 TGTATATGGCCGATTAGACCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
58117198 TTTATATGGCTCATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
58117220 GTCACATTCA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
27 1 0.02
28 17 0.26
29 47 0.71
30 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:58117214 original size:58 final size:57
Alignment explanation
Indices: 58117109--58117219 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 57
58117099 AAATTCACAT
* *
58117109 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
58117166 ACCTGTATATGGCCGATT-AGACCCAAATCACATTTATATGGCTCATTAGGCCCA
1 ACCTGTATATGGCCCATTAAG-CCC-AATCACATTCATATGGCCCATTAGGCCCA
58117220 GTCACATTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
56 2 0.04
57 19 0.40
58 26 0.55
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:58117484 original size:16 final size:16
Alignment explanation
Indices: 58117441--58117484 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
58117431 GTATCCAAAC
58117441 TTTCGGCTTTTCAACA
1 TTTCGGCTTTTCAACA
* **
58117457 TTTCAGCTTTTCGGCA
1 TTTCGGCTTTTCAACA
*
58117473 TTTCGGCATTTC
1 TTTCGGCTTTTC
58117485 CGGTTTTGCC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.14, C:0.25, G:0.16, T:0.45
Consensus pattern (16 bp):
TTTCGGCTTTTCAACA
Found at i:58121814 original size:29 final size:29
Alignment explanation
Indices: 58121718--58121832 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
58121708 TACCTATATC
* * * *
58121718 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCGATTAGGCCCAAATCACATTTATA
* * *
58121746 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCGATTAGGCCCAAATCACATTTATA
58121775 TGGCCGATTAGGCCCAAATCACATTTATA
1 TGGCCGATTAGGCCCAAATCACATTTATA
* * * *
58121804 TGGCTGGTTAGGCCC-AGTCACATTCATA
1 TGGCCGATTAGGCCCAAATCACATTTATA
58121832 T
1 T
58121833 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 26 0.35
29 48 0.65
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (29 bp):
TGGCCGATTAGGCCCAAATCACATTTATA
Found at i:58124465 original size:46 final size:46
Alignment explanation
Indices: 58124398--58124572 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 46
58124388 TGTACCCCGC
*
58124398 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCGGGAATTTGAAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGAATTTGAAT
* * *
58124444 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G--AATTTGA-AT
* ** * * *
58124494 -C-TCA-CGAACTCAAACTCAACTCAACGAGCTC-AGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGA-ATTTGAAT
* *
58124537 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
58124573 ATGCCCAAAT
Statistics
Matches: 99, Mismatches: 19, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 2 0.02
46 57 0.58
47 24 0.24
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGAATTTGAAT
Found at i:58127583 original size:48 final size:48
Alignment explanation
Indices: 58127518--58127611 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
58127508 CTTTTTGTGT
* *
58127518 CATCAAATATTTTAGACTTTTATGATCTGTATACACTCGGCATTTTTC
1 CATCAAATATTTGAGACTTTTATGATCTGTATACACTCCGCATTTTTC
*
58127566 CATCAAGTATTTGAGACTTTTATGATCTGTATACACTCCGCATTTT
1 CATCAAATATTTGAGACTTTTATGATCTGTATACACTCCGCATTTT
58127612 CCTCCGTACA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.43
Consensus pattern (48 bp):
CATCAAATATTTGAGACTTTTATGATCTGTATACACTCCGCATTTTTC
Found at i:58132169 original size:46 final size:46
Alignment explanation
Indices: 58132003--58132176 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
58131993 TGTACCCCGC
* * * *
58132003 CCATAAGTGAACTTGGACTCAACTCAATGAGCTCGGGA-ATTTGAAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGACA-TTGCAT
* * *
58132049 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-GAC-A-TTGCAT
* * **
58132099 -C-TCA-CGAACTCATACTCAACTCAACGAGCTC-AGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGACATT-GCAT
58132142 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG
58132177 GATGCCCAAA
Statistics
Matches: 101, Mismatches: 18, Indels: 17
0.74 0.13 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 55 0.54
47 25 0.25
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGACATTGCAT
Found at i:58136654 original size:2 final size:2
Alignment explanation
Indices: 58136647--58136671 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
58136637 ACATCTATGG
58136647 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
58136672 TATTCAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:58137695 original size:15 final size:15
Alignment explanation
Indices: 58137675--58137704 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58137665 AGTCTCTGCT
*
58137675 TAGGAACCGAGTTAA
1 TAGGAACCAAGTTAA
58137690 TAGGAACCAAGTTAA
1 TAGGAACCAAGTTAA
58137705 GTCTTCAACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.20
Consensus pattern (15 bp):
TAGGAACCAAGTTAA
Found at i:58142103 original size:22 final size:22
Alignment explanation
Indices: 58142075--58142134 Score: 120
Period size: 22 Copynumber: 2.7 Consensus size: 22
58142065 CAATGAGAAG
58142075 CCCCCTTTTCCCTCCCGGGAAA
1 CCCCCTTTTCCCTCCCGGGAAA
58142097 CCCCCTTTTCCCTCCCGGGAAA
1 CCCCCTTTTCCCTCCCGGGAAA
58142119 CCCCCTTTTCCCTCCC
1 CCCCCTTTTCCCTCCC
58142135 TTTTGGCAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.10, C:0.55, G:0.10, T:0.25
Consensus pattern (22 bp):
CCCCCTTTTCCCTCCCGGGAAA
Found at i:58143331 original size:32 final size:29
Alignment explanation
Indices: 58143290--58143368 Score: 86
Period size: 32 Copynumber: 2.6 Consensus size: 29
58143280 TTCTAATTTT
58143290 TTTGAAAATTTTAATTAAGCTCACTTAAAATA
1 TTTGAAAATTTTAATTAAGCTCAC--AAAA-A
* * *
58143322 TTTGAAAATTCTCATTAATCTCACAAAAA
1 TTTGAAAATTTTAATTAAGCTCACAAAAA
*
58143351 TTTTAAAATTTTTAATTA
1 TTTGAAAA-TTTTAATTA
58143369 GACCCCACTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
29 8 0.20
30 11 0.28
32 21 0.52
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (29 bp):
TTTGAAAATTTTAATTAAGCTCACAAAAA
Found at i:58154785 original size:8 final size:8
Alignment explanation
Indices: 58154772--58154797 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
58154762 TATTCCTGCC
58154772 TCCTTTCT
1 TCCTTTCT
58154780 TCCTTTCT
1 TCCTTTCT
58154788 TCCTTTCT
1 TCCTTTCT
58154796 TC
1 TC
58154798 TTCAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (8 bp):
TCCTTTCT
Found at i:58158297 original size:27 final size:27
Alignment explanation
Indices: 58158267--58158318 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
58158257 AAAAGTGATC
* *
58158267 AAAAAAGTGAAAAA-TAGAAAAATATG
1 AAAAAAATGAAAAATTAAAAAAATATG
*
58158293 AAAAAAATTAAAAATTAAAAAAATAT
1 AAAAAAATGAAAAATTAAAAAAATAT
58158319 TTTGTGGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (27 bp):
AAAAAAATGAAAAATTAAAAAAATATG
Found at i:58159067 original size:18 final size:18
Alignment explanation
Indices: 58159044--58159085 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
58159034 TTGTTAATAA
58159044 TATT-TTTTA-TTT-TAT
1 TATTATTTTATTTTCTAT
58159059 TATTATTTTATTTTCTAT
1 TATTATTTTATTTTCTAT
*
58159077 TATTGTTTT
1 TATTATTTT
58159086 CAAAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 4 0.17
16 5 0.22
17 3 0.13
18 11 0.48
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.76
Consensus pattern (18 bp):
TATTATTTTATTTTCTAT
Found at i:58159077 original size:15 final size:16
Alignment explanation
Indices: 58159044--58159080 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
58159034 TTGTTAATAA
*
58159044 TATT-TTTTATTTTAT
1 TATTATTTTATTTTAC
58159059 TATTATTTTATTTT-C
1 TATTATTTTATTTTAC
58159074 TATTATT
1 TATTATT
58159081 GTTTTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (16 bp):
TATTATTTTATTTTAC
Found at i:58160561 original size:19 final size:19
Alignment explanation
Indices: 58160537--58160574 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
58160527 TCCAAAATTT
*
58160537 TGGATTTCTTTTGGTTTTG
1 TGGATTACTTTTGGTTTTG
*
58160556 TGGATTAGTTTTGGTTTTG
1 TGGATTACTTTTGGTTTTG
58160575 ATTATGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.03, G:0.29, T:0.61
Consensus pattern (19 bp):
TGGATTACTTTTGGTTTTG
Found at i:58161130 original size:20 final size:20
Alignment explanation
Indices: 58161093--58161132 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
58161083 AGAAACTGAG
*
58161093 ACTTCTGAAAGATTTTTGAA
1 ACTTCTGAAAGATATTTGAA
58161113 ACTTCTGATAA-ATATTTGAA
1 ACTTCTGA-AAGATATTTGAA
58161133 GCATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (20 bp):
ACTTCTGAAAGATATTTGAA
Found at i:58166051 original size:13 final size:13
Alignment explanation
Indices: 58166033--58166057 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58166023 TAATGGTATA
58166033 TTGAATCCATGAT
1 TTGAATCCATGAT
58166046 TTGAATCCATGA
1 TTGAATCCATGA
58166058 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:58167623 original size:48 final size:48
Alignment explanation
Indices: 58167564--58168073 Score: 984
Period size: 48 Copynumber: 10.6 Consensus size: 48
58167554 AAAGTGTAAT
58167564 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
58167612 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
58167660 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
58167708 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
58167756 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
58167804 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
58167852 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
58167900 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
58167948 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
58167996 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
58168044 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
58168074 TGTTGTAACA
Statistics
Matches: 456, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 456 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:58168168 original size:37 final size:37
Alignment explanation
Indices: 58168118--58168240 Score: 237
Period size: 37 Copynumber: 3.3 Consensus size: 37
58168108 GGAAATATAT
58168118 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
58168155 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
58168192 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
58168229 TCCGGGTAAGAC
1 TCCGGGTAAGAC
58168241 TTCGTAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:58173452 original size:18 final size:17
Alignment explanation
Indices: 58173425--58173458 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
58173415 AAAAAATTTC
58173425 TTTTTATTATTATTTTA
1 TTTTTATTATTATTTTA
*
58173442 TTTTCTATTATTGTTTT
1 TTTT-TATTATTATTTT
58173459 CAAAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTATTATTATTTTA
Found at i:58175552 original size:47 final size:48
Alignment explanation
Indices: 58175465--58175593 Score: 188
Period size: 47 Copynumber: 2.7 Consensus size: 48
58175455 CGAGATGAGA
* ** *
58175465 GCCACTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGACATGTGT
* *
58175513 GCCAGTGTAAGACCATGTTTGGGGC-TGGCATCGACGATGACATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGACATGTGT
*
58175560 GCCAGTATAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
58175594 GCACTGACAT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 41 0.58
48 30 0.42
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGACATGTGT
Found at i:58175619 original size:48 final size:47
Alignment explanation
Indices: 58175410--58175679 Score: 173
Period size: 48 Copynumber: 5.8 Consensus size: 47
58175400 ACCATGGTTA
* * * * *
58175410 ATGAGTTCCCGTGT-AGAACCATGTTTGGGACATGGCATTGGCATCCGAG
1 ATGAGTACCAGTGTAAG-ACCATGTCTGGGACATGGCATCGGCAT--GAC
* * *
58175459 ATGAG-AGCCACTGTAAGACCATGTCTGGGACATGGCATCGGTGATGAT
1 ATGAGTA-CCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATGAC
* * * * *
58175507 ATGTGTGCCAGTGTAAGACCATGTTTGGGGC-TGGCATCGACGATGAC
1 ATGAGTACCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGAC
* * *
58175554 ATGTGTGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCACTGAC
1 ATGAGTACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TGAC
* ** * * * *
58175602 ATGAG-ACCTTGTGTAAGACCACATCTGGGATATAGCGTCGACATG--
1 ATGAGTACC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAC
*
58175647 -TG-G-ATCCA-TGTAAGACCATGTTTGGGACATGGC
1 ATGAGTA-CCAGTGTAAGACCATGTCTGGGACATGGC
58175680 TTTGGTACCT
Statistics
Matches: 177, Mismatches: 35, Indels: 25
0.75 0.15 0.11
Matches are distributed among these distances:
42 20 0.11
43 2 0.01
44 4 0.02
47 45 0.25
48 70 0.40
49 32 0.18
50 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (47 bp):
ATGAGTACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAC
Found at i:58178410 original size:7 final size:7
Alignment explanation
Indices: 58178398--58178422 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
58178388 GTTGTCTTCT
58178398 TGTTTGA
1 TGTTTGA
58178405 TGTTTGA
1 TGTTTGA
58178412 TGTTTGA
1 TGTTTGA
58178419 TGTT
1 TGTT
58178423 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:58179354 original size:27 final size:28
Alignment explanation
Indices: 58179298--58179367 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
58179288 AAATTTGTAC
58179298 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
58179326 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
58179353 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58179368 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:58181399 original size:22 final size:21
Alignment explanation
Indices: 58181369--58181412 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
58181359 TGAGGTGTCC
58181369 TATGGTGAAATTTCATGAGAAT
1 TATGGTGAAATTTCATGA-AAT
*
58181391 TATGTTGAAATTTCATGAAAT
1 TATGGTGAAATTTCATGAAAT
58181412 T
1 T
58181413 TCAGTGGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (21 bp):
TATGGTGAAATTTCATGAAAT
Found at i:58183773 original size:45 final size:45
Alignment explanation
Indices: 58183671--58183890 Score: 322
Period size: 45 Copynumber: 5.0 Consensus size: 45
58183661 CCGAATTCAT
* * *
58183671 TCACCGGCATT-TTGCATGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATA
*
58183713 TTACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATA
*
58183758 TCACCGGCATTATAGCTTGCTAGGCTCGAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATA
* *
58183803 TCACCGGCATTATAGCCTTCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATA
* *
58183848 TCACCGGCATTATAGCCTTCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTA
58183891 CTGTACGATA
Statistics
Matches: 165, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
42 10 0.06
43 16 0.10
44 5 0.03
45 133 0.81
46 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATA
Found at i:58183999 original size:43 final size:43
Alignment explanation
Indices: 58183951--58184039 Score: 151
Period size: 43 Copynumber: 2.1 Consensus size: 43
58183941 TAGGTACAAA
*
58183951 CATCATTCGAATATATCATCCTACATTTTGTTCACTTTTATTT
1 CATCATTCGAATATATCATCCTACATTTTATTCACTTTTATTT
* *
58183994 CATCATTCGGATATTTCATCCTACATTTTATTCACTTTTATTT
1 CATCATTCGAATATATCATCCTACATTTTATTCACTTTTATTT
58184037 CAT
1 CAT
58184040 TTCATCACTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.25, C:0.21, G:0.04, T:0.49
Consensus pattern (43 bp):
CATCATTCGAATATATCATCCTACATTTTATTCACTTTTATTT
Found at i:58184763 original size:47 final size:47
Alignment explanation
Indices: 58184712--58184903 Score: 312
Period size: 47 Copynumber: 4.1 Consensus size: 47
58184702 AAAATTTTCT
* * ** * *
58184712 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAATTTTAACAAAC
1 TTAACTAAGTAACTTATCCAGAATTATTAAGAACAAATTTAACAAGC
* *
58184759 TTAACTAAGTAACTTATTCGGAATTATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCAGAATTATTAAGAACAAATTTAACAAGC
58184806 TTAACTAAGTAACTTATCCAGAATTATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCAGAATTATTAAGAACAAATTTAACAAGC
58184853 TTAACTAAGTAACTTATCCAGAATTATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCAGAATTATTAAGAACAAATTTAACAAGC
58184900 TTAA
1 TTAA
58184904 ATCCAACTTA
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 137 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCAGAATTATTAAGAACAAATTTAACAAGC
Found at i:58191689 original size:45 final size:45
Alignment explanation
Indices: 58191612--58191770 Score: 216
Period size: 45 Copynumber: 3.6 Consensus size: 45
58191602 GCATTTCGCA
* *
58191612 TGCTAGGCTCGAA-GCCCG-ATA-TCATTTCACCGGCATTATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAGT-ATATCACCGGCATTATAGCC
* ** * *
58191655 TACTAGGCTTGAAGGCCTGAATAGTATGTCACCGGCATTATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGCC
58191700 TGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGCC
*
58191745 TGTTAGGCTCAAAGGCCCGAATAGTA
1 TGCTAGGCTCAAAGGCCCGAATAGTA
58191771 CTGTACGATA
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 11 0.11
44 4 0.04
45 87 0.84
46 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (45 bp):
TGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGCC
Found at i:58194628 original size:3 final size:3
Alignment explanation
Indices: 58194620--58194648 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
58194610 AGTTCGTGTG
58194620 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
58194649 GAAATGTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:58195303 original size:48 final size:48
Alignment explanation
Indices: 58195078--58195303 Score: 272
Period size: 48 Copynumber: 4.7 Consensus size: 48
58195068 ATGAGATCTC
* * * * * * *
58195078 GTGTAAGACCATGTCTGGGACATGGCGTTGGCATCTGAGATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA-ATGATATGTGTGCTA
* * ** *
58195127 GTGTAAGACCATGTTTGGGACATGGTATCGGTGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTA
* * *
58195175 GTGTAAGACCATGTCTGGGAGATGGAATCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTA
*
58195223 GTGTAAGACCATGTCTGGTACATGGCATCGGCAATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTA
* * *
58195271 GTATATGACCATGCCTGGGACATGGCATCGGCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA
58195304 CTGACATGAG
Statistics
Matches: 154, Mismatches: 23, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
48 127 0.82
49 27 0.18
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTA
Found at i:58195323 original size:48 final size:48
Alignment explanation
Indices: 58195084--58195329 Score: 127
Period size: 48 Copynumber: 5.1 Consensus size: 48
58195074 TCTCGTGTAA
* * * * * * *
58195084 GACCATGTCTGGGACATGGCGTTGGCATCTGAGATGAGAGCC-AGTGTAA
1 GACCATGCCTGGGACATGGCATCGGCA-ATGACATGAGA-CCTAGTATAG
** * ** * * * * *
58195133 GACCATGTTTGGGACATGGTATCGGTGATGATATGTGTGCC-AGTGTAA
1 GACCATGCCTGGGACATGGCATCGGCAATGACATGAG-ACCTAGTATAG
* * * * * * ** * *
58195181 GACCATGTCTGGGAGATGGAATCGGCGATGATATGTGTGCTAGTGTAA
1 GACCATGCCTGGGACATGGCATCGGCAATGACATGAGACCTAGTATAG
* * * * ** *
58195229 GACCATGTCTGGTACATGGCATCGGCAATGATATGTGTGCTAGTATAT
1 GACCATGCCTGGGACATGGCATCGGCAATGACATGAGACCTAGTATAG
* *
58195277 GACCATGCCTGGGACATGGCATCGGCACTGACATGAGACCTTGTATAG
1 GACCATGCCTGGGACATGGCATCGGCAATGACATGAGACCTAGTATAG
58195325 GACCA
1 GACCA
58195330 CATCTAGGAT
Statistics
Matches: 164, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
47 1 0.01
48 142 0.87
49 21 0.13
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (48 bp):
GACCATGCCTGGGACATGGCATCGGCAATGACATGAGACCTAGTATAG
Found at i:58195329 original size:96 final size:95
Alignment explanation
Indices: 58195081--58195329 Score: 243
Period size: 96 Copynumber: 2.6 Consensus size: 95
58195071 AGATCTCGTG
* * * * *
58195081 TAAGACCATGTCTGGGACATGGCGTTGGCATCTGAGATGAGAGCCAGTGTA-AGACCATGTTTGG
1 TAAGACCATGTCTGGGACATGGCATCGGCA-CTGACATGAGA-CC-TTGTATAGACCATGTCTGG
* ** *
58195145 GACATGGTATCGGTGATGATATGTGTGCCAGTG
63 GACATGGCATCGGCAATGATATGTGTGCCAGTA
* * * * **
58195178 TAAGACCATGTCTGGGAGATGGAATCGGCGA-TGATATGTGTGCTAGTGTA-AGACCATGTCTGG
1 TAAGACCATGTCTGGGACATGGCATCGGC-ACTGACATGAGACCT--TGTATAGACCATGTCTGG
* *
58195241 TACATGGCATCGGCAATGATATGTGTGCTAGTA
63 GACATGGCATCGGCAATGATATGTGTGCCAGTA
* *
58195274 TATGACCATGCCTGGGACATGGCATCGGCACTGACATGAGACCTTGTATAGGACCA
1 TAAGACCATGTCTGGGACATGGCATCGGCACTGACATGAGACCTTGTATA-GACCA
58195330 CATCTAGGAT
Statistics
Matches: 122, Mismatches: 24, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
94 4 0.03
95 3 0.02
96 89 0.73
97 25 0.20
98 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (95 bp):
TAAGACCATGTCTGGGACATGGCATCGGCACTGACATGAGACCTTGTATAGACCATGTCTGGGAC
ATGGCATCGGCAATGATATGTGTGCCAGTA
Found at i:58195737 original size:149 final size:149
Alignment explanation
Indices: 58195467--58195764 Score: 578
Period size: 149 Copynumber: 2.0 Consensus size: 149
58195457 CAAGATTATG
*
58195467 GTTAAGAAGTGGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
1 GTTAAGAAGTAGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
*
58195532 TTATTGAGACTATGAAATGTCGAGACCTCAGTGAGCTACGATGTATGAATTATGATTACGAATTT
66 TTATTGAGACTATGAAATGTCGAGACCTCAGTGAGCTAAGATGTATGAATTATGATTACGAATTT
58195597 TGTTGCAATATCATGCTAA
131 TGTTGCAATATCATGCTAA
58195616 GTTAAGAAGTAGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
1 GTTAAGAAGTAGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
58195681 TTATTGAGACTATGAAATGTCGAGACCTCAGTGAGCTAAGATGTATGAATTATGATTACGAATTT
66 TTATTGAGACTATGAAATGTCGAGACCTCAGTGAGCTAAGATGTATGAATTATGATTACGAATTT
58195746 TGTTGCAATATCATGCTAA
131 TGTTGCAATATCATGCTAA
58195765 CTTACATTGT
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 147 1.00
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.30
Consensus pattern (149 bp):
GTTAAGAAGTAGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
TTATTGAGACTATGAAATGTCGAGACCTCAGTGAGCTAAGATGTATGAATTATGATTACGAATTT
TGTTGCAATATCATGCTAA
Found at i:58199181 original size:30 final size:30
Alignment explanation
Indices: 58199147--58199207 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58199137 TCCTTAACTC
58199147 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
58199177 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
58199207 A
1 A
58199208 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:58204237 original size:40 final size:40
Alignment explanation
Indices: 58204188--58204355 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
58204178 TCTTCGGAAT
* * *
58204188 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
58204227 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
58204267 TTAGCCCGGATATAACAATTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
58204307 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
58204347 TTAGCCCGG
1 TTAGCCCGG
58204356 GTATCATTCA
Statistics
Matches: 105, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 3 0.03
40 101 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:58220368 original size:21 final size:21
Alignment explanation
Indices: 58220322--58220360 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
58220312 AGTTGTGAGT
58220322 TGAA-TTATATTTTAATTAGG
1 TGAATTTATATTTTAATTAGG
58220342 TGAATTTAT-TTTTAATTAG
1 TGAATTTATATTTTAATTAG
58220361 AAGTAATTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (21 bp):
TGAATTTATATTTTAATTAGG
Found at i:58220720 original size:26 final size:25
Alignment explanation
Indices: 58220691--58220744 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
58220681 AAAACAAGAA
* *
58220691 AAAGAAACAGAGAA-GAAACGAAATAG
1 AAAGAAAAAAAGAAGGAAA-GAAA-AG
58220717 AAAGAAAAAAAGAAGGAAAGAAAAG
1 AAAGAAAAAAAGAAGGAAAGAAAAG
58220742 AAA
1 AAA
58220745 AAGGAGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.20
26 16 0.64
27 4 0.16
ACGTcount: A:0.72, C:0.04, G:0.22, T:0.02
Consensus pattern (25 bp):
AAAGAAAAAAAGAAGGAAAGAAAAG
Found at i:58220737 original size:16 final size:16
Alignment explanation
Indices: 58220690--58220749 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
58220680 AAAAACAAGA
*
58220690 AAAAGAAACA-GAGAAG
1 AAAAGAAAAAGGA-AAG
* *
58220706 AAACGAAATA-GAAAG
1 AAAAGAAAAAGGAAAG
58220721 AAAA-AAAGAAGGAAAG
1 AAAAGAAA-AAGGAAAG
58220737 AAAAGAAAAAGGA
1 AAAAGAAAAAGGA
58220750 GAAATTAGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
14 3 0.08
15 7 0.19
16 24 0.65
17 3 0.08
ACGTcount: A:0.72, C:0.03, G:0.23, T:0.02
Consensus pattern (16 bp):
AAAAGAAAAAGGAAAG
Found at i:58223124 original size:80 final size:80
Alignment explanation
Indices: 58223040--58223188 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
58223030 TATGGTAACC
* * * *
58223040 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
58223104 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
58223120 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
58223185 CCGG
66 CCGG
58223189 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:58223130 original size:40 final size:38
Alignment explanation
Indices: 58223081--58223188 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
58223071 ATCACGATTT
*
58223081 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
58223121 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
58223161 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
58223189 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:58231050 original size:47 final size:47
Alignment explanation
Indices: 58230921--58231086 Score: 137
Period size: 46 Copynumber: 3.6 Consensus size: 47
58230911 CGAGTGCTAA
* * * ** *
58230921 TGTAAGACATGTCTGGGACA-CGTATCAGCCT-CGAGACATAAGCCAG
1 TGTAAGACATGTCTGGGACATGGCATCA-ACTACGAGATGTGAGCCAG
* * * *
58230967 TGCAAGACATGTCTCGGACAT-GCATCAGCTACGAGATGAT-AGTCAG
1 TGTAAGACATGTCTGGGACATGGCATCAACTACGAGATG-TGAGCCAG
*
58231013 TGTAAGACCATGTCTGGGACATGGCATCAACT-TGAGATGTGAGCCAG
1 TGTAAGA-CATGTCTGGGACATGGCATCAACTACGAGATGTGAGCCAG
* *
58231060 TGTAAAACGTGTCTAGGG-CATGGCATC
1 TGTAAGACATGTCT-GGGACATGGCATC
58231087 GGCACCTTAC
Statistics
Matches: 99, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
45 2 0.02
46 55 0.56
47 34 0.34
48 8 0.08
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGGCATCAACTACGAGATGTGAGCCAG
Found at i:58233232 original size:40 final size:40
Alignment explanation
Indices: 58233173--58233314 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
58233163 AAATTGAATG
* * *
58233173 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
58233213 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
58233253 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
58233293 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
58233315 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:58233315 original size:40 final size:39
Alignment explanation
Indices: 58233212--58233340 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
58233202 TGCTGGAAAT
* * *
58233212 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
58233252 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
58233292 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
58233332 TATATCCGG
1 TATATCCGG
58233341 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:58245722 original size:113 final size:113
Alignment explanation
Indices: 58245528--58245760 Score: 402
Period size: 113 Copynumber: 2.1 Consensus size: 113
58245518 ATTTACTATC
*
58245528 AAAA-TTTCTAAGTCTTCAAACTAAATCCTTTCAAGCAAGATTCCATTCCTAAGATAAAATTAAA
1 AAAATTTTCTAAATCTTCAAACTAAATCCTTTCAAGCAAGATTCCATTCCTAAGATAAAATTAAA
58245592 ACATCAAATTTTTATACAAGTACTACTA-AC-TATAAGGTATGCAAAT
66 ACATCAAATTTTTATACAAGTACTACTACACATATAAGGTATGCAAAT
58245638 AAAATTTTCTAAATCTCTC-AACTAAATCCTTTCAAGCAAGATTCACATTCCTAAGATAAAAATT
1 AAAATTTTCTAAATCT-TCAAACTAAATCCTTTCAAGCAAGATTC-CATTCCTAAGAT-AAAATT
58245702 AAAACATCAAATTTTTATACAAGTACTACTACACATATAAGGTATGCAAAT
63 AAAACATCAAATTTTTATACAAGTACTACTACACATATAAGGTATGCAAAT
58245753 AAAATTTT
1 AAAATTTT
58245761 AACTAAATTT
Statistics
Matches: 116, Mismatches: 1, Indels: 7
0.94 0.01 0.06
Matches are distributed among these distances:
110 4 0.03
111 35 0.30
112 14 0.12
113 37 0.32
114 2 0.02
115 24 0.21
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.32
Consensus pattern (113 bp):
AAAATTTTCTAAATCTTCAAACTAAATCCTTTCAAGCAAGATTCCATTCCTAAGATAAAATTAAA
ACATCAAATTTTTATACAAGTACTACTACACATATAAGGTATGCAAAT
Found at i:58250315 original size:114 final size:112
Alignment explanation
Indices: 58250148--58250380 Score: 286
Period size: 114 Copynumber: 2.1 Consensus size: 112
58250138 AAAGGCTATG
* * * *
58250148 CCATGAACAATCATAGTCATATCATATCATGCCATAGGTCTTAATCACATGGTCTTACATACATT
1 CCATGAACAATCATAGCCATATCATATCATGCCATAGGTATTAACCACATGGTCTTACACACATT
* ** * *
58250213 CATGTTTTGTGTTCTCCCATTCCAGTTTCATCTTACTGGAGGCTACA
66 CATGTATCATGTTCTCCCATTCCAGTTTCAGCTTACTAGAGGCTACA
* * * * *
58250260 CCATGAACATTCATATAGCCATATCATATCATGTCATGGGTATTAACCAGATGGTCTTACACATA
1 CCATGAACAATC--ATAGCCATATCATATCATGCCATAGGTATTAACCACATGGTCTTACACACA
* * * *
58250325 TTCATGTATCATGTTTTGCCATTCCAGTTTTAGCTTGCTAGAGGCTACA
64 TTCATGTATCATGTTCTCCCATTCCAGTTTCAGCTTACTAGAGGCTACA
58250374 CCATGAA
1 CCATGAA
58250381 TAGTTCCAAT
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
112 11 0.11
114 90 0.89
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (112 bp):
CCATGAACAATCATAGCCATATCATATCATGCCATAGGTATTAACCACATGGTCTTACACACATT
CATGTATCATGTTCTCCCATTCCAGTTTCAGCTTACTAGAGGCTACA
Found at i:58253808 original size:27 final size:27
Alignment explanation
Indices: 58253778--58253839 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
58253768 GGGCAAAATG
58253778 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
58253805 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
58253832 GTAATTTT
1 GTAATTTT
58253840 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:58253878 original size:26 final size:26
Alignment explanation
Indices: 58253822--58253919 Score: 126
Period size: 27 Copynumber: 3.7 Consensus size: 26
58253812 TACCCTACAG
* * *
58253822 GGGTATTTTAGTAATTTTTCAAACCA
1 GGGTATTTTGGTAATTTTACAAACTA
58253848 TGGGTATTTTGGTAATTTTACAAACTA
1 -GGGTATTTTGGTAATTTTACAAACTA
*
58253875 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACT-A
58253902 GGGTATTTCT-GTAATTTT
1 GGGTATTT-TGGTAATTTT
58253920 GTAAATCGAG
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
26 24 0.37
27 40 0.62
28 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:58253925 original size:27 final size:27
Alignment explanation
Indices: 58253822--58253933 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
58253812 TACCCTACAG
* * **
58253822 GGGTATTTTAGTAATTTTTCAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATTGA
*
58253848 TGGGTATTTTGGTAATTTTACAAACT-A
1 -GGGTATTTTGGTAATTTTACAAATTGA
58253875 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
** *
58253902 GGGTATTTCT-GTAATTTTGTAAATCGA
1 GGGTATTT-TGGTAATTTTACAAATTGA
58253929 GGGTA
1 GGGTA
58253934 AAATAGTAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
26 24 0.32
27 50 0.67
28 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:58253942 original size:27 final size:27
Alignment explanation
Indices: 58253912--58254364 Score: 563
Period size: 27 Copynumber: 16.8 Consensus size: 27
58253902 GGGTATTTCT
* *
58253912 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * * *
58253939 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58253966 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58253992 GATAATTTTGTAAATCGAGGGTAAAATA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* * * *
58254020 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58254047 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58254073 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* *
58254101 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58254128 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58254155 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58254182 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58254209 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58254236 GTAATTTTGTAAATCGAGGGT-AAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58254262 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58254289 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58254316 GTAATTATGTAAATCGGGGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58254342 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
58254365 CTTTGGTAAT
Statistics
Matches: 369, Mismatches: 51, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
26 27 0.07
27 340 0.92
28 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:58254375 original size:54 final size:54
Alignment explanation
Indices: 58253912--58254364 Score: 622
Period size: 54 Copynumber: 8.4 Consensus size: 54
58253902 GGGTATTTCT
* * * * **
58253912 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * * * **
58253966 GTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACG
* * * * * * *
58254020 GTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATAAATCGACGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* *
58254074 ATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
58254128 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
58254182 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
58254236 GTAATTTTGTAAATCGAGGGT-AAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * *
58254289 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * *
58254343 ATAATTCTGTAAATCGGGGGTA
1 GTAATTTTGTAAATCGAGGGTA
58254365 CTTTGGTAAT
Statistics
Matches: 358, Mismatches: 38, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
53 54 0.15
54 303 0.85
55 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:58254391 original size:27 final size:27
Alignment explanation
Indices: 58254370--58254459 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
58254360 GGGTACTTTG
*
58254370 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
58254397 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
58254424 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
58254451 GTAATTTTA
1 GTAATTTTA
58254460 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:58254401 original size:81 final size:81
Alignment explanation
Indices: 58253884--58254418 Score: 583
Period size: 81 Copynumber: 6.6 Consensus size: 81
58253874 AGGGTATTTT
* * *** * *
58253884 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
* * * *
58253949 AAATCAAGAGAAAAAT
66 AAATCGAGGGTAAAAC
* * * *
58253965 AGTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAATAGTAATTCTG
1 GGTAATTTTATAAATCGAGGGTAAAACAG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
* * * *
58254029 TAAATCAAGAGAAAAAT
65 TAAATCGAGGGTAAAAC
* * *
58254046 AGTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
1 GGTAATTTTATAAATCGAGGGTAAAACAG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
*
58254110 TAAATCAAGGGTAAAAC
65 TAAATCGAGGGTAAAAC
* * * *
58254127 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAT
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
58254192 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * * *
58254208 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT-AAACAGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
58254272 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * * *
58254288 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTG
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTG
* ****
58254352 TAAATCGGGGGTACTTT
65 TAAATCGAGGGTAAAAC
* * * *** **
58254369 GGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTA
58254419 TTTCAGTATT
Statistics
Matches: 401, Mismatches: 49, Indels: 8
0.88 0.11 0.02
Matches are distributed among these distances:
80 75 0.19
81 325 0.81
82 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (81 bp):
GGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
AAATCGAGGGTAAAAC
Found at i:58254411 original size:54 final size:54
Alignment explanation
Indices: 58254353--58254459 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
58254343 ATAATTCTGT
* * *
58254353 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
58254407 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
58254460 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:58254430 original size:134 final size:134
Alignment explanation
Indices: 58253912--58254418 Score: 509
Period size: 135 Copynumber: 3.8 Consensus size: 134
58253902 GGGTATTTCT
* * * * * * ** * *
58253912 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATA
1 GTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
* * * * * * *
58253977 AATCGACGGTAAA-ACGATAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGA
66 AATCGAAGGTAAACA-G-TAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGT
**
58254041 AAAATA
129 AAAACG
* * * * * **
58254047 GTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GTAATTATATAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAC
* *
58254111 AAATC-AAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGG
65 AAATCGAA-GGT-AAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGG
58254175 TAAAACG
128 TAAAACG
* **
58254182 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTA
1 GTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
* * * *
58254247 AATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAA
66 AATCGAAGGTAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAA
58254312 AACG
131 AACG
* * * ****
58254316 GTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGTAAATCGGGGGTACTTTGGTAATTTTAC
1 GTAATTATATAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAC
* ** *
58254380 AAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTA
65 AAATCGAAGGTA-AACAGTAATTTTATAAATCGAGGGTA
58254419 TTTCAGTATT
Statistics
Matches: 317, Mismatches: 47, Indels: 16
0.83 0.12 0.04
Matches are distributed among these distances:
133 1 0.00
134 118 0.37
135 192 0.61
136 6 0.02
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.29
Consensus pattern (134 bp):
GTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
AATCGAAGGTAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAA
AACG
Found at i:58254473 original size:27 final size:27
Alignment explanation
Indices: 58254370--58254474 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
58254360 GGGTACTTTG
* *
58254370 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
58254397 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
58254424 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
58254451 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
58254475 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:58258187 original size:27 final size:27
Alignment explanation
Indices: 58258157--58258218 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
58258147 GGGCAAAATG
58258157 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
58258184 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
58258211 GTAATTTT
1 GTAATTTT
58258219 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:58258231 original size:27 final size:27
Alignment explanation
Indices: 58258198--58258277 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
58258188 TTTTACCCTA
* *
58258198 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
58258225 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
58258252 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
58258278 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:58258232 original size:54 final size:54
Alignment explanation
Indices: 58258173--58258299 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
58258163 TTACCCCACA
** *
58258173 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
58258226 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
58258281 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
58258300 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:58258285 original size:27 final size:28
Alignment explanation
Indices: 58258199--58258311 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
58258189 TTTACCCTAC
* * *
58258199 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
58258226 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
58258253 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
58258281 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
58258308 AGGG
1 AGGG
58258312 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:58258322 original size:27 final size:27
Alignment explanation
Indices: 58258292--58258743 Score: 572
Period size: 27 Copynumber: 16.8 Consensus size: 27
58258282 GGGTATTTCT
* *
58258292 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * * *
58258319 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58258346 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58258372 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* * * *
58258400 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58258427 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58258453 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
*
58258481 GTAATTCTGTAAATC-AGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58258507 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58258534 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58258561 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58258588 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58258615 GTAATTTTGTAAATCGAGGGT-AAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58258641 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58258668 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58258695 GTAATTATGTAAATCGGGGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58258721 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
58258744 CTTTGGTAAT
Statistics
Matches: 369, Mismatches: 49, Indels: 14
0.85 0.11 0.03
Matches are distributed among these distances:
26 50 0.14
27 317 0.86
28 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:58258754 original size:54 final size:54
Alignment explanation
Indices: 58258292--58258743 Score: 631
Period size: 54 Copynumber: 8.4 Consensus size: 54
58258282 GGGTATTTCT
* * * * **
58258292 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * * * *
58258346 GTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACG
* * * * * * *
58258400 GTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATAAATCGACGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
58258454 ATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
58258507 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
58258561 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
58258615 GTAATTTTGTAAATCGAGGGT-AAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * *
58258668 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * *
58258722 ATAATTCTGTAAATCGGGGGTA
1 GTAATTTTGTAAATCGAGGGTA
58258744 CTTTGGTAAT
Statistics
Matches: 358, Mismatches: 36, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
53 104 0.29
54 253 0.71
55 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:58258757 original size:134 final size:134
Alignment explanation
Indices: 58258292--58258743 Score: 570
Period size: 134 Copynumber: 3.4 Consensus size: 134
58258282 GGGTATTTCT
* * * * * * ** *
58258292 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTAT
1 GTAATTATATAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT
* * *
58258356 AAATCGACGGTAAA-ACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGAG
65 AAATCGAGGGTAAACA-G-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGG
* **
58258420 AAAAATA
128 TAAAACG
* * * *
58258427 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTATATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
* *
58258492 AATC-AGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
66 AATCGAGGGT-AAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
58258556 AAACG
130 AAACG
* *
58258561 GTAATTTTATAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGT
1 GTAATTATATAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT
* * *
58258625 AAATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
65 AAATCGAGGGTAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
58258690 AAACG
130 AAACG
* * *
58258695 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTATATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
58258744 CTTTGGTAAT
Statistics
Matches: 279, Mismatches: 32, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
133 1 0.00
134 210 0.75
135 67 0.24
136 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (134 bp):
GTAATTATATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
AACG
Found at i:58258779 original size:27 final size:26
Alignment explanation
Indices: 58258749--58258837 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
58258739 GGGTACTTTG
*
58258749 GTAATTTTGCAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
58258776 GTAA-TTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
58258802 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
58258829 GTAATTTTA
1 GTAATTTTA
58258838 GTAAACTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
26 24 0.47
27 27 0.53
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:58258789 original size:134 final size:133
Alignment explanation
Indices: 58258292--58258796 Score: 541
Period size: 134 Copynumber: 3.8 Consensus size: 133
58258282 GGGTATTTCT
* * * * * * ** * *
58258292 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTAT
1 GTAATTATATAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGT
* * * *
58258356 AAATCGACGGTAAA-ACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGAG
65 AAATCGAGGGTAAACA-G-TAA-TTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGG
* **
58258420 AAAAATA
127 TAAAACG
* * * * *
58258427 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTATATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTA
*
58258492 AATC-AGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
66 AATCGAGGGT-AAACAGTAA-TTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
58258556 AAACG
129 AAACG
*
58258561 GTAATTTTATAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGT
1 GTAATTATATAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGT
* * *
58258625 AAATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
65 AAATCGAGGGTAAACAGTAATT-TATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
58258690 AAACG
129 AAACG
* * * **** *
58258695 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTACTTTGGTAATTTTGCA
1 GTAATTATATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTA
* * ** *
58258760 AGTCGAAGGTATTTCAGTAATTTACAAATCGAGGGTA
66 AATCGAGGGTA-AACAGTAATTTATAAATCGAGGGTA
58258797 TTTCAGTATT
Statistics
Matches: 320, Mismatches: 42, Indels: 17
0.84 0.11 0.04
Matches are distributed among these distances:
133 3 0.01
134 241 0.75
135 75 0.23
136 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (133 bp):
GTAATTATATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTA
AATCGAGGGTAAACAGTAATTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAA
ACG
Found at i:58258796 original size:107 final size:107
Alignment explanation
Indices: 58258292--58258743 Score: 611
Period size: 107 Copynumber: 4.2 Consensus size: 107
58258282 GGGTATTTCT
* * * * ** *
58258292 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGT-AAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATA
* * *
58258357 AATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACA
65 AATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACG
* * ** * * * * *
58258400 GTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATAAATCGACGGTAAAACGATAATTTTGTA
1 GTAATTTTGTAAATCGAG-GGTAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATA
58258465 AATCGAGGGTAAAACAGTAATTCTGTAAATC-AGGGTAAAACG
65 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
58258507 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATA
1 GTAATTTTGTAAATCGAGGGT-AAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATA
58258572 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
65 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
58258615 GTAATTTTGTAAATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAA
1 GTAATTTTGTAAATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAA
* * *
58258680 ATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACG
66 ATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * *
58258722 ATAATTCTGTAAATCGGGGGTA
1 GTAATTTTGTAAATCGAGGGTA
58258744 CTTTGGTAAT
Statistics
Matches: 305, Mismatches: 35, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
106 1 0.00
107 195 0.64
108 107 0.35
109 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (107 bp):
GTAATTTTGTAAATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAA
ATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:58258844 original size:28 final size:27
Alignment explanation
Indices: 58258767--58258846 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
58258757 GCAAGTCGAA
*
58258767 GGTATTTCAGTAA-TTTACAAA-TCGAG
1 GGTATTTCAGTAATTTTACAAACT-AAG
*
58258793 GGTATTTCAGTATTTTTACAAACTAAG
1 GGTATTTCAGTAATTTTACAAACTAAG
* *
58258820 GGTATTTCGGTAATTTTAGTAAACTAA
1 GGTATTTCAGTAATTTTA-CAAACTAA
58258847 AGTATTCTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 12 0.26
27 26 0.57
28 8 0.17
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAACTAAG
Found at i:58262567 original size:27 final size:26
Alignment explanation
Indices: 58262537--58262597 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
58262527 GGGCAAAATG
58262537 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTA-CCCACAAGGGTATTTCA
* * *
58262564 GTAATTTTACCTACAGGGGTATTTTA
1 GTAATTTTACCCACAAGGGTATTTCA
58262590 GTAATTTT
1 GTAATTTT
58262598 TCAAACCATG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 22 0.71
27 9 0.29
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (26 bp):
GTAATTTTACCCACAAGGGTATTTCA
Found at i:58262594 original size:53 final size:55
Alignment explanation
Indices: 58262537--58262678 Score: 139
Period size: 54 Copynumber: 2.7 Consensus size: 55
58262527 GGGCAAAATG
** **
58262537 GTAATTTTACCCCA-CAAGGGTATTTCAGTAATTTTACCTAC-AGGGGTATTTTA
1 GTAATTTTACCAAACCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTA
* * ** *
58262590 GTAATTTT-TCAAACCATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACCAAACCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTA
*** *
58262644 GTAATTTTA-CAAATTGAGGGTATTTCTGTAATTTT
1 GTAATTTTACCAAACCAAGGGTATTTCAGTAATTTT
58262679 GTAAATCGAG
Statistics
Matches: 71, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
52 2 0.03
53 30 0.42
54 39 0.55
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.42
Consensus pattern (55 bp):
GTAATTTTACCAAACCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTA
Found at i:58262598 original size:27 final size:26
Alignment explanation
Indices: 58262554--58262678 Score: 126
Period size: 27 Copynumber: 4.7 Consensus size: 26
58262544 TACCCCACAA
* **
58262554 GGGTATTTCAGTAATTTTACCTACAG
1 GGGTATTTTAGTAATTTTACAAACAG
* *
58262580 GGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTTAGTAATTTTACAAA-CAG
*
58262607 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAAC-AG
* **
58262634 GGGTATTTTGGTAATTTTACAAATTG
1 GGGTATTTTAGTAATTTTACAAACAG
58262660 AGGGTATTTCT-GTAATTTT
1 -GGGTATTT-TAGTAATTTT
58262679 GTAAATCGAG
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.25
27 63 0.74
28 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (26 bp):
GGGTATTTTAGTAATTTTACAAACAG
Found at i:58262650 original size:54 final size:53
Alignment explanation
Indices: 58262554--58262678 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 53
58262544 TACCCCACAA
** *
58262554 GGGTATTTCAGTAATTTTACCTACAGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTACAAACAGGGGTATTTTAGTAATTTTACAAACCAT
** * **
58262607 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGA-
1 GGGTATTTCAGTAATTTTACAAAC-AGGGGTATTTTAGTAATTTTACAAA-CCAT
*
58262661 GGGTATTTCTGTAATTTT
1 GGGTATTTCAGTAATTTT
58262679 GTAAATCGAG
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
53 20 0.33
54 39 0.65
55 1 0.02
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (53 bp):
GGGTATTTCAGTAATTTTACAAACAGGGGTATTTTAGTAATTTTACAAACCAT
Found at i:58262684 original size:27 final size:27
Alignment explanation
Indices: 58262580--58262692 Score: 115
Period size: 27 Copynumber: 4.2 Consensus size: 27
58262570 TTACCTACAG
* * *
58262580 GGGTATTTTAGTAATTTTTCAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
58262606 TGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTGGTAATTTTACAAATCGA
*
58262633 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATCGA
**
58262661 GGGTATTTCT-GTAATTTTGTAAATCGA
1 GGGTATTT-TGGTAATTTTACAAATCGA
58262688 GGGTA
1 GGGTA
58262693 AAATAGTAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 73 0.97
28 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:58262701 original size:27 final size:27
Alignment explanation
Indices: 58262671--58263123 Score: 538
Period size: 27 Copynumber: 16.8 Consensus size: 27
58262661 GGGTATTTCT
* *
58262671 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * * *
58262698 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58262725 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58262751 GATAATTTTGTAAATCGAGGGTAAAATA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* * * * *
58262779 GTAATTTTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58262806 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58262832 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
*
58262860 GTAATTCTGTAAATC-AGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58262886 GTAAGTT-TATAAATCGAGGGTAAAATA
1 GTAA-TTCTGTAAATCGAGGGTAAAACA
* *
58262913 GTAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58262940 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58262967 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58262994 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58263021 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58263048 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
58263075 GTAATTATGTAAATCGGGGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
58263101 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
58263124 CTTTGGTAAT
Statistics
Matches: 367, Mismatches: 51, Indels: 16
0.85 0.12 0.04
Matches are distributed among these distances:
26 26 0.07
27 339 0.92
28 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:58263117 original size:81 final size:81
Alignment explanation
Indices: 58262671--58263123 Score: 597
Period size: 81 Copynumber: 5.6 Consensus size: 81
58262661 GGGTATTTCT
* * * * *
58262671 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
58262736 AATCGACGGTAAAACG
66 AATCGAGGGTAAAACG
* * * * * * *
58262752 ATAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCAAGAGAAAAATAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
58262817 AATCGACGGTAAAACG
66 AATCGAGGGTAAAACG
* *
58262833 ATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AGGGTAAAACGGTAAGTT-TAT
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAA-TTCTAT
**
58262896 AAATCGAGGGTAAAATA
65 AAATCGAGGGTAAAACG
* * * * * *
58262913 GTAATTCTGTAAATCGAGGATAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
58262978 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * *
58262994 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
58263059 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * *
58263075 GTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGTAAATCGGGGGTA
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTA
58263124 CTTTGGTAAT
Statistics
Matches: 337, Mismatches: 31, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
80 67 0.20
81 270 0.80
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:58263134 original size:54 final size:54
Alignment explanation
Indices: 58262671--58263123 Score: 613
Period size: 54 Copynumber: 8.4 Consensus size: 54
58262661 GGGTATTTCT
* * * * **
58262671 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * * * **
58262725 GTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACG
* * * * * *
58262779 GTAATTTTGTAAATCAAGAGAAAAATAGTAATTCTATAAATCGACGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
58262833 ATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
58262886 GTAAGTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGATAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
58262940 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
58262994 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * *
58263048 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * *
58263102 ATAATTCTGTAAATCGGGGGTA
1 GTAATTTTGTAAATCGAGGGTA
58263124 CTTTGGTAAT
Statistics
Matches: 354, Mismatches: 42, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
53 49 0.14
54 304 0.86
55 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:58263150 original size:27 final size:27
Alignment explanation
Indices: 58263129--58263218 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
58263119 GGGTACTTTG
*
58263129 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
58263156 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
58263183 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
58263210 GTAATTTTA
1 GTAATTTTA
58263219 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:58263160 original size:81 final size:81
Alignment explanation
Indices: 58262643--58263177 Score: 466
Period size: 81 Copynumber: 6.6 Consensus size: 81
58262633 GGGGTATTTT
* * *** * * *
58262643 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GGTAATTTTACAAATCGAAGGTAAAACAGTAATTATGTAAATCGAGGGTAAAACAGTAATTCTGT
* * * *
58262708 AAATCAAGAGAAAAAT
66 AAATCGAGGGTAAAAC
* * * * * * *
58262724 AGTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAATAGTAATTTTG
1 GGTAATTTTACAAATCGAAGGTAAAACAG-TAATTATGTAAATCGAGGGTAAAACAGTAATTCTG
* * * *
58262788 TAAATCAAGAGAAAAAT
65 TAAATCGAGGGTAAAAC
* * * * *
58262805 AGTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
1 GGTAATTTTACAAATCGAAGGTAAAACAG-TAATTATGTAAATCGAGGGTAAAACAGTAATTCTG
58262869 TAAATC-AGGGTAAAAC
65 TAAATCGAGGGTAAAAC
* * * * * * * * *
58262885 GGTAAGTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGATAAAACGGTAATTTTAT
1 GGTAATTTTACAAATCGAAGGTAAAACAGTAATTATGTAAATCGAGGGTAAAACAGTAATTCTGT
58262950 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * ** * * *
58262966 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GGTAATTTTACAAATCGAAGGTAAAACAGTAATTATGTAAATCGAGGGTAAAACAGTAATTCTGT
58263031 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
** * * *
58263047 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTG
1 GGTAATTTTACAAATCGAAGGTAAAACAGTAATTATGTAAATCGAGGGTAAAACAG-TAATTCTG
* ****
58263111 TAAATCGGGGGTACTTT
65 TAAATCGAGGGTAAAAC
* *** * **
58263128 GGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTA
1 GGTAATTTTACAAATCGAAGGTAAAACAGTAATTATGTAAATCGAGGGTA
58263178 TTTCAGTATT
Statistics
Matches: 394, Mismatches: 56, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
80 67 0.17
81 327 0.83
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (81 bp):
GGTAATTTTACAAATCGAAGGTAAAACAGTAATTATGTAAATCGAGGGTAAAACAGTAATTCTGT
AAATCGAGGGTAAAAC
Found at i:58263170 original size:54 final size:54
Alignment explanation
Indices: 58263112--58263218 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
58263102 ATAATTCTGT
* * *
58263112 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
58263166 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
58263219 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:58263232 original size:27 final size:27
Alignment explanation
Indices: 58263129--58263232 Score: 88
Period size: 27 Copynumber: 3.9 Consensus size: 27
58263119 GGGTACTTTG
* *
58263129 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
58263156 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
58263183 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
58263210 GTAATTTTAGTAAACTAA-AGTAT
1 GTAATTTTA-CAAACTAAGAGTAT
58263233 CCTAAACATG
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.84
28 8 0.12
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:58265763 original size:23 final size:23
Alignment explanation
Indices: 58265719--58265764 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
58265709 AGTTAAATAT
*
58265719 TATTTATTAATATTTTGCTTAGA
1 TATTTATTAATATTTTACTTAGA
* *
58265742 TATTTATTATTATTTTATTTAGA
1 TATTTATTAATATTTTACTTAGA
58265765 AAAATGATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (23 bp):
TATTTATTAATATTTTACTTAGA
Found at i:58272160 original size:42 final size:41
Alignment explanation
Indices: 58272049--58272248 Score: 247
Period size: 42 Copynumber: 4.8 Consensus size: 41
58272039 TAAGATGCCA
* *
58272049 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAATCACATATCG
* * * * * *
58272091 ATGCGGATAGCCCAGCTATGGTCTTACACGATGTCTCATATTG
1 ATGC-CATATCCCAGATATGGTCTTACACGA-ATCACATATCG
* * *
58272134 ATGCCATGTCCCAGACATGGTCTTACACAAAATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTACAC-GAATCACATATCG
*
58272176 ATGCCATATCCCAGATATGGTCTTACACGGAATCCCATATCG
1 ATGCCATATCCCAGATATGGTCTTACAC-GAATCACATATCG
58272218 ATGCCATATCCCAGATATGGTCTTACACGAA
1 ATGCCATATCCCAGATATGGTCTTACACGAA
58272249 ATTACACATA
Statistics
Matches: 133, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
41 3 0.02
42 97 0.73
43 33 0.25
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCACATATCG
Found at i:58272230 original size:84 final size:85
Alignment explanation
Indices: 58272049--58272250 Score: 273
Period size: 84 Copynumber: 2.4 Consensus size: 85
58272039 TAAGATGCCA
* ** * *
58272049 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCGGATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCACATATCGATGCGCATAGCCCAGATATGGTC
* * *
58272114 TTACACGATGTCTCATATTG
66 TTACACGATATCCCATATCG
* * * *
58272134 ATGCCATGTCCCAGACATGGTCTTACACAAAATCACATATCGATGC-CATATCCCAGATATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCACATATCGATGCGCATAGCCCAGATATGGTC
58272198 TTACACGGA-ATCCCATATCG
66 TTACAC-GATATCCCATATCG
58272218 ATGCCATATCCCAGATATGGTCTTACACGAAAT
1 ATGCCATATCCCAGATATGGTCTTACACGAAAT
58272251 TACACATAAT
Statistics
Matches: 101, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
84 59 0.58
85 42 0.42
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (85 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCACATATCGATGCGCATAGCCCAGATATGGTC
TTACACGATATCCCATATCG
Found at i:58275538 original size:28 final size:28
Alignment explanation
Indices: 58275495--58275593 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
58275485 CATGATTATA
*
58275495 AATGTGATTGGGCCTGACGGGCCATATG
1 AATGTGATTGGGCCTGATGGGCCATATG
*
58275523 AAAGTGATTGGGCCTGATGGGCCATATG
1 AATGTGATTGGGCCTGATGGGCCATATG
*
58275551 AATGTGATTGGGCCCGATGGGCCATATG
1 AATGTGATTGGGCCTGATGGGCCATATG
*
58275579 AATGAGATTGGGCCT
1 AATGTGATTGGGCCT
58275594 AAAGGGGCCA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.25
Consensus pattern (28 bp):
AATGTGATTGGGCCTGATGGGCCATATG
Done.