Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 195 of 410
Found at i:59605216 original size:30 final size:30
Alignment explanation
Indices: 59605182--59605241 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
59605172 ATTTAATACT
*
59605182 AACTTTGGAAAAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
59605212 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
59605242 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:59608158 original size:27 final size:27
Alignment explanation
Indices: 59608128--59608259 Score: 128
Period size: 27 Copynumber: 4.9 Consensus size: 27
59608118 AGGTTATCCC
*
59608128 TTCATATTTCACCACAAAGGGTACTCT
1 TTCATATTTCACCACAAAGGCTACTCT
** *
59608155 TTCATATTTTTCCATAAAGGCTACTCT
1 TTCATATTTCACCACAAAGGCTACTCT
* * *
59608182 TTCATGA-TTCGCCATAAAGGCTA-TTT
1 TTCAT-ATTTCACCACAAAGGCTACTCT
*
59608208 TTCATATTTCACCACATAA-GCTACTAT
1 TTCATATTTCACCACA-AAGGCTACTCT
*
59608235 TTCATGATCT-ACCACAAAGGCTACT
1 TTCAT-ATTTCACCACAAAGGCTACT
59608260 ATTTTCTTGA
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
25 1 0.01
26 20 0.23
27 63 0.72
28 4 0.05
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (27 bp):
TTCATATTTCACCACAAAGGCTACTCT
Found at i:59608254 original size:53 final size:54
Alignment explanation
Indices: 59608135--59608259 Score: 139
Period size: 53 Copynumber: 2.3 Consensus size: 54
59608125 CCCTTCATAT
* ** * *
59608135 TTCACCACAAAGGGTACTCTTTCATATTTTTCCATAAAGGCTACTCTTTCATGA
1 TTCACCACAAAGGCTACTCTTTCATATTTCACCACAAAGGCTACTATTTCATGA
* * *
59608189 TTCGCCATAAAGGCTA-TTTTTCATATTTCACCACATAA-GCTACTATTTCATGA
1 TTCACCACAAAGGCTACTCTTTCATATTTCACCACA-AAGGCTACTATTTCATGA
59608242 -TCTACCACAAAGGCTACT
1 TTC-ACCACAAAGGCTACT
59608260 ATTTTCTTGA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
52 2 0.03
53 40 0.69
54 16 0.28
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (54 bp):
TTCACCACAAAGGCTACTCTTTCATATTTCACCACAAAGGCTACTATTTCATGA
Found at i:59609361 original size:27 final size:27
Alignment explanation
Indices: 59609331--59609384 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
59609321 AGCAGAGCGA
*
59609331 ATAGGACTGCATCTCACAGATTTCTCT
1 ATAGGACTGCATCTCACAAATTTCTCT
*
59609358 ATAGGATTGCATCTCACAAATTTCTCT
1 ATAGGACTGCATCTCACAAATTTCTCT
59609385 CATTCTACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (27 bp):
ATAGGACTGCATCTCACAAATTTCTCT
Found at i:59616963 original size:18 final size:18
Alignment explanation
Indices: 59616942--59616998 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
59616932 TATTTATTTA
*
59616942 GTAATAGTCAGTTATTCG
1 GTAATAATCAGTTATTCG
* * *
59616960 GTAACAATCAATTATTCA
1 GTAATAATCAGTTATTCG
*
59616978 ATAATAATCAGTTATTCG
1 GTAATAATCAGTTATTCG
59616996 GTA
1 GTA
59616999 GCAATCAACT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
GTAATAATCAGTTATTCG
Found at i:59617004 original size:18 final size:18
Alignment explanation
Indices: 59616949--59617005 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
59616939 TTAGTAATAG
59616949 TCAGTTATTCGGTAACAA
1 TCAGTTATTCGGTAACAA
* ** *
59616967 TCAATTATTCAATAATAA
1 TCAGTTATTCGGTAACAA
*
59616985 TCAGTTATTCGGTAGCAA
1 TCAGTTATTCGGTAACAA
59617003 TCA
1 TCA
59617006 ACTGAACGGT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
TCAGTTATTCGGTAACAA
Found at i:59617080 original size:19 final size:19
Alignment explanation
Indices: 59617015--59617082 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 19
59617005 AACTGAACGG
* *
59617015 TTATCCAGTAACAGTC-AA
1 TTATTCAGTAACAATCAAA
* *
59617033 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCAAA
* *
59617052 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
59617070 TTATTCAGTAACA
1 TTATTCAGTAACA
59617083 GTCGATCTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
18 27 0.69
19 12 0.31
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:59617209 original size:6 final size:6
Alignment explanation
Indices: 59617198--59617228 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
59617188 CTGAAGCCGG
59617198 AACAGT AACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT AACAGT A
59617229 TGGTACACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:59617269 original size:53 final size:53
Alignment explanation
Indices: 59617210--59617330 Score: 215
Period size: 53 Copynumber: 2.3 Consensus size: 53
59617200 CAGTAACAGT
* *
59617210 AACAGTAACAGTAACAGTATGGTACACAGAGTACCTCATCGGAACAAATTCGA
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATTCAA
*
59617263 AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCGGAACAAATTCAA
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATTCAA
59617316 AACAGTAACAGTAAC
1 AACAGTAACAGTAAC
59617331 GGTAACAGTA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 65 1.00
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATTCAA
Found at i:59617271 original size:59 final size:59
Alignment explanation
Indices: 59617204--59617340 Score: 205
Period size: 53 Copynumber: 2.4 Consensus size: 59
59617194 CCGGAACAGT
* *
59617204 AACAGTAACAGTAACAGTAACAGTATGGTACACAGAGTACCTCATCGGAACAAATTCGA
1 AACAGTAACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATTCAA
59617263 AACAGTAACAGTAACA-T-----TACGGTACACAGAGTACCTCATCGGAACAAATTCAA
1 AACAGTAACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATTCAA
*
59617316 AACAGTAACAGTAACGGTAACAGTA
1 AACAGTAACAGTAACAGTAACAGTA
59617341 ACAATATCCG
Statistics
Matches: 69, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
53 49 0.71
54 1 0.01
58 1 0.01
59 18 0.26
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (59 bp):
AACAGTAACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATTCAA
Found at i:59618467 original size:20 final size:18
Alignment explanation
Indices: 59618431--59618475 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
59618421 AAACCTTCAA
59618431 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
59618449 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
59618469 -TTTCCCT
1 TTTTCCCT
59618476 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:59623201 original size:18 final size:18
Alignment explanation
Indices: 59623180--59623236 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
59623170 TATTTATTTA
*
59623180 GTAATAGTCAGTTATTCG
1 GTAATAATCAGTTATTCG
* * *
59623198 GTAACAATCAATTATTCA
1 GTAATAATCAGTTATTCG
*
59623216 ATAATAATCAGTTATTCG
1 GTAATAATCAGTTATTCG
59623234 GTA
1 GTA
59623237 TCAATCAACT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
GTAATAATCAGTTATTCG
Found at i:59623242 original size:18 final size:18
Alignment explanation
Indices: 59623187--59623243 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
59623177 TTAGTAATAG
*
59623187 TCAGTTATTCGGTAACAA
1 TCAGTTATTCGGTATCAA
* **
59623205 TCAATTATTCAATAAT-AA
1 TCAGTTATTCGGT-ATCAA
59623223 TCAGTTATTCGGTATCAA
1 TCAGTTATTCGGTATCAA
59623241 TCA
1 TCA
59623244 ACTGATCGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
17 2 0.07
18 27 0.90
19 1 0.03
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (18 bp):
TCAGTTATTCGGTATCAA
Found at i:59623279 original size:18 final size:18
Alignment explanation
Indices: 59623253--59623323 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
59623243 AACTGATCGG
*
59623253 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* * *
59623271 TTATTCAGTAAAAATTAGA
1 TTATTCAGTAACAGTCA-A
* * *
59623290 -TATACAGTAACAATTAAA
1 TTATTCAGTAAC-AGTCAA
59623308 TTATTCAGTAACAGTC
1 TTATTCAGTAACAGTC
59623324 GATCTTTCCA
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
18 25 0.64
19 14 0.36
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:59623318 original size:19 final size:19
Alignment explanation
Indices: 59623269--59623320 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
59623259 AGTAACAGTC
*
59623269 AATTATTCAGTAAAAATTA
1 AATTATTCAGTAACAATTA
* *
59623288 GA-TATACAGTAACAATTA
1 AATTATTCAGTAACAATTA
59623306 AATTATTCAGTAACA
1 AATTATTCAGTAACA
59623321 GTCGATCTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.33
Consensus pattern (19 bp):
AATTATTCAGTAACAATTA
Found at i:59623503 original size:53 final size:53
Alignment explanation
Indices: 59623442--59623572 Score: 208
Period size: 53 Copynumber: 2.5 Consensus size: 53
59623432 CCGGAATAGT
*
59623442 AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATTCGA
1 AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATTCAA
* *
59623495 AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCGGAACAAATTCAA
1 AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATTCAA
* *
59623548 AATAGTAACAGTAACGGTAACAGTA
1 AACAGTAACAGTAACAGT-ACAGTA
59623573 ACAATATCCG
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 65 0.93
54 5 0.07
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATTCAA
Found at i:59624701 original size:20 final size:18
Alignment explanation
Indices: 59624665--59624705 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 18
59624655 AAACCTTCAA
59624665 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
59624683 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
59624703 TTT
1 TTT
59624706 CCCCGCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 6 0.29
20 10 0.48
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:59631185 original size:21 final size:21
Alignment explanation
Indices: 59631159--59631199 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
59631149 CTTCCTCCAT
*
59631159 GCATATAATGAGTATATCATA
1 GCATATAATGAGCATATCATA
* *
59631180 GCATATCATGTGCATATCAT
1 GCATATAATGAGCATATCAT
59631200 GTCCTATCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (21 bp):
GCATATAATGAGCATATCATA
Found at i:59631379 original size:27 final size:27
Alignment explanation
Indices: 59631321--59631544 Score: 216
Period size: 27 Copynumber: 8.3 Consensus size: 27
59631311 AGGGGCAAAA
* * * * *
59631321 TGGTAATTTTACCCCACAAGGTTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
59631348 CGGTAATTCTACCGTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
59631375 TGGTATTTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
59631402 TGATAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
**
59631429 CAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** *
59631456 CAGTAACTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** * *
59631483 CAGTATTTTTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* ** *
59631510 TGGTAATTTTA-CAAACCAAGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
59631537 TGGTAATT
1 TGGTAATT
59631545 TTACAAGTTG
Statistics
Matches: 167, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 2 0.01
27 165 0.99
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:59631545 original size:27 final size:26
Alignment explanation
Indices: 59631502--59631599 Score: 106
Period size: 27 Copynumber: 3.7 Consensus size: 26
59631492 TACCCTACAG
*
59631502 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-TAA
* *
59631529 GGGTATTTTGGTAATTTTACAAGTTGA
1 GGGTATTTTGGTAATTTTACAA-ATAA
** * *
59631556 GGGTATTTCAGTAATTTCACAAATTA
1 GGGTATTTTGGTAATTTTACAAATAA
59631582 GCGGTATTTTGGTAATTT
1 G-GGTATTTTGGTAATTT
59631600 GGTAAACTAA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.05
27 56 0.95
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATAA
Found at i:59633524 original size:33 final size:32
Alignment explanation
Indices: 59633465--59633528 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
59633455 ACGAAGTCAC
* *
59633465 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
59633497 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATATAGATAT-TGTGGCGAAGCCACCAGA
59633529 TTGCAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:59634330 original size:27 final size:27
Alignment explanation
Indices: 59634254--59634343 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
59634244 GGCAAAATGG
* * * * *
59634254 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
59634281 TAATTTTACCCTATAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
59634308 TAATTCTATCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
59634335 TAATTCTAC
1 TAATTCTAC
59634344 AAATTATGAC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:59640094 original size:27 final size:27
Alignment explanation
Indices: 59640003--59640082 Score: 133
Period size: 27 Copynumber: 3.0 Consensus size: 27
59639993 CTGGAGATTC
59640003 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
* * *
59640030 GGTAATTCTATCCTACATGAGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
59640057 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
59640083 CAATAATTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTT
Found at i:59642295 original size:7 final size:7
Alignment explanation
Indices: 59642281--59642319 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
59642271 AAAAGTAAAT
59642281 AAATGAG
1 AAATGAG
*
59642288 ACATGAG
1 AAATGAG
59642295 AAATGAG
1 AAATGAG
59642302 AAATGAG
1 AAATGAG
59642309 AAATGAG
1 AAATGAG
59642316 AAAT
1 AAAT
59642320 CAAATAATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.56, C:0.03, G:0.26, T:0.15
Consensus pattern (7 bp):
AAATGAG
Found at i:59645987 original size:19 final size:19
Alignment explanation
Indices: 59645963--59646004 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
59645953 ATACTTATAA
59645963 TTTGAATAATCTTTTTTTC
1 TTTGAATAATCTTTTTTTC
59645982 TTTGAATAATCTTTTTTTC
1 TTTGAATAATCTTTTTTTC
59646001 TTTG
1 TTTG
59646005 CCAATTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.19, C:0.10, G:0.07, T:0.64
Consensus pattern (19 bp):
TTTGAATAATCTTTTTTTC
Found at i:59647714 original size:47 final size:47
Alignment explanation
Indices: 59647646--59647770 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 47
59647636 TTTGTGTGCT
* * *
59647646 AGTGTAAGACATGTTTAGGACATGCATCGGCCACATTATG-AGA-A-CC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-ATGA-GAAGAGAGCC
* **
59647692 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CAATGAGAAGAGAGTT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAATGAGAAGAGAGCC
59647740 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
59647771 TATGAGATGT
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
45 1 0.02
46 21 0.32
47 29 0.44
48 15 0.23
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCAATGAGAAGAGAGCC
Found at i:59647746 original size:48 final size:47
Alignment explanation
Indices: 59647691--59647865 Score: 198
Period size: 48 Copynumber: 3.7 Consensus size: 47
59647681 TTATGAGAAC
* *
59647691 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCAATGAGAAGAGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAGAAG-GTGT
* * *
59647739 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAG-ATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAGAAGGTGT
* * * *
59647783 CATTGCAAGACCATGTTTGGGACATGGCATTGGCACGTAT-A-AAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA---ATGAGAAGGTGT
59647831 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
59647866 CGGGTATGTG
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
44 10 0.10
45 14 0.13
46 19 0.18
47 14 0.13
48 46 0.44
49 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAGAAGGTGT
Found at i:59662441 original size:23 final size:23
Alignment explanation
Indices: 59662411--59662457 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
59662401 TGTGTCCCTA
59662411 TATTTTGAAAAATTTTCTAAATT
1 TATTTTGAAAAATTTTCTAAATT
59662434 TATTTTGAAAAATTTTCTAAATT
1 TATTTTGAAAAATTTTCTAAATT
59662457 T
1 T
59662458 TCTAATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (23 bp):
TATTTTGAAAAATTTTCTAAATT
Found at i:59664235 original size:18 final size:18
Alignment explanation
Indices: 59664212--59664249 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
59664202 CTAGTGCGTT
59664212 TAGTGTAGTGATTACGTC
1 TAGTGTAGTGATTACGTC
59664230 TAGTGTAGTGATTACGTC
1 TAGTGTAGTGATTACGTC
59664248 TA
1 TA
59664250 TATACTTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39
Consensus pattern (18 bp):
TAGTGTAGTGATTACGTC
Found at i:59673427 original size:30 final size:30
Alignment explanation
Indices: 59673393--59673452 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
59673383 ATTTAATACG
59673393 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
59673423 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
59673453 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:59680416 original size:46 final size:46
Alignment explanation
Indices: 59680363--59680536 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
59680353 TGTAACCCGC
*
59680363 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
59680409 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
59680459 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
59680501 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
59680537 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 26 0.24
46 36 0.34
47 25 0.23
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:59680534 original size:92 final size:93
Alignment explanation
Indices: 59680371--59680540 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
59680361 GCCCATAAGT
* *
59680371 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
59680436 CAAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
*
59680464 GAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
59680528 CGAGTTCGGATGC
66 CAAGTTCGGATGC
59680541 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 48 0.66
93 25 0.34
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:59680992 original size:30 final size:30
Alignment explanation
Indices: 59680958--59681017 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
59680948 ATTTAATACG
59680958 AACTTTAGAAAAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
* * *
59680988 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
59681018 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTGCCCCTA
Found at i:59686433 original size:28 final size:28
Alignment explanation
Indices: 59686393--59686456 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
59686383 TGTACTAGAG
*
59686393 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATGACCATTA
*
59686421 TACCCCTATGTATGCAAAATGACCTTTA
1 TACCCCTATGTATGCAAAATGACCATTA
59686449 TACCCCTA
1 TACCCCTA
59686457 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCATTA
Found at i:59687307 original size:18 final size:19
Alignment explanation
Indices: 59687269--59687309 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
59687259 TGGTTCATGT
59687269 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
59687288 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
59687306 TTTC
1 TTTC
59687310 TTATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:59687499 original size:39 final size:38
Alignment explanation
Indices: 59687432--59687566 Score: 92
Period size: 39 Copynumber: 3.4 Consensus size: 38
59687422 ACCAATATGG
* * *
59687432 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
59687471 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
59687509 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
* *
59687550 CACCGAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
59687567 ACTCGAGGTC
Statistics
Matches: 72, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.49
40 4 0.06
41 15 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:59687832 original size:18 final size:19
Alignment explanation
Indices: 59687806--59687844 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
59687796 TTTCAATTCA
59687806 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
59687825 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
59687843 AT
1 AT
59687845 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:59689159 original size:5 final size:5
Alignment explanation
Indices: 59689149--59689205 Score: 114
Period size: 5 Copynumber: 11.4 Consensus size: 5
59689139 CTTATGTTTT
59689149 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
59689199 ATATA AT
1 ATATA AT
59689206 TAAAACATAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 52 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:59689608 original size:27 final size:28
Alignment explanation
Indices: 59689557--59689636 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 28
59689547 CTGGTGCCTA
* * *
59689557 TGCCACAAATTACCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
*
59689585 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
*
59689612 TGCCACAAAATATTTGTATCTGGTG
1 TGCCACAAAATATCTGT-TCTGGTG
59689637 ACTCTGTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.52
28 14 0.32
29 7 0.16
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGGCAC
Found at i:59689647 original size:29 final size:28
Alignment explanation
Indices: 59689557--59689647 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
59689547 CTGGTGCCTA
* * * *
59689557 TGCCACAAATTACCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
59689585 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
59689612 TGCCACAAAATATTTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
59689641 TGTCACA
1 TGCCACA
59689648 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:59690121 original size:19 final size:19
Alignment explanation
Indices: 59690099--59690137 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
59690089 TTTTAATTAT
* *
59690099 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
59690118 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
59690137 T
1 T
59690138 GCGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:59692431 original size:18 final size:18
Alignment explanation
Indices: 59692408--59692445 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
59692398 ACCTTAAAAT
59692408 AGAATGAATGGTAAGTTA
1 AGAATGAATGGTAAGTTA
59692426 AGAATGAATGGTAAGTTA
1 AGAATGAATGGTAAGTTA
59692444 AG
1 AG
59692446 TACCATGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (18 bp):
AGAATGAATGGTAAGTTA
Found at i:59695162 original size:17 final size:18
Alignment explanation
Indices: 59695120--59695168 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
59695110 AGTTGAAAAG
59695120 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
59695139 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
59695156 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
59695169 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:59696057 original size:40 final size:40
Alignment explanation
Indices: 59695991--59696157 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
59695981 AAATTGAATG
* * *
59695991 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
59696030 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
59696070 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
59696110 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
59696150 ATATCCGG
1 ATATCCGG
59696158 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:59703174 original size:17 final size:18
Alignment explanation
Indices: 59703132--59703180 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
59703122 AGTTGAAAAG
59703132 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
59703151 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
59703168 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
59703181 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:59704069 original size:40 final size:40
Alignment explanation
Indices: 59704003--59704169 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
59703993 AAATTGAATG
* * *
59704003 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
59704042 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
59704082 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
59704122 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
59704162 ATATCCGG
1 ATATCCGG
59704170 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:59712702 original size:12 final size:12
Alignment explanation
Indices: 59712670--59712694 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59712660 AACTTACTCT
59712670 TACGAATTCCCA
1 TACGAATTCCCA
59712682 TACGAATTCCCA
1 TACGAATTCCCA
59712694 T
1 T
59712695 TCGTATTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.32, G:0.08, T:0.28
Consensus pattern (12 bp):
TACGAATTCCCA
Found at i:59717865 original size:46 final size:47
Alignment explanation
Indices: 59717723--59717982 Score: 223
Period size: 46 Copynumber: 5.6 Consensus size: 47
59717713 ATGTCGATTC
* * * **
59717723 CATGTCCCAGACATGGTCTTACACTGGCTCTCACATATC-CGTGCCGACA
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACATCTCAAG-GCCGATG
*
59717772 CATGTCCCAGACATGTCTTACACTAG---TACATCTCATA-GACGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCA-AGGCCGATG
* * *
59717816 CATGACCCAGACATGCCTTACACTGGCT-TACATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGGCCGATG
* ** *
59717862 CATGTCCTAGACATGTCTTACACTAGCTCT-TGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGGCCGATG
* ** **
59717908 CCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCTAATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTACAT-CTCAAGGCCGATG
*
59717956 CATATCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
59717983 ACACACGCAT
Statistics
Matches: 175, Mismatches: 27, Indels: 21
0.78 0.12 0.09
Matches are distributed among these distances:
44 33 0.19
45 2 0.01
46 65 0.37
47 27 0.15
48 33 0.19
49 15 0.09
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGGCCGATG
Found at i:59722624 original size:18 final size:18
Alignment explanation
Indices: 59722587--59722625 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
59722577 CTGGAAATCC
*
59722587 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
59722605 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
59722623 AAA
1 AAA
59722626 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:59737246 original size:48 final size:47
Alignment explanation
Indices: 59737175--59737363 Score: 182
Period size: 48 Copynumber: 3.9 Consensus size: 47
59737165 ACATTTGGGT
* * *
59737175 GATATGTGTGCCAGTGTAAGACCATGTCTAGG-ACATGGCGTCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGT-T-GGAACATGGCATCGGCCAC
* ** * *
59737223 GATATGAGAGCTAGTGTAAGACCATGATTGGAACATGGCATTAGCGAT
1 GATATGAGAGCCAGTGTAAGACCATG-TTGGAACATGGCATCGGCCAC
* * * * * *
59737271 GTTGTGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGACCTC
1 GATATGAGAGCCAGTGTAAGACCATGT-TGGAACATGGCATCGGCCAC
* *
59737319 GACATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 GATATGAGAGCCAGTGTAAGACCATG-TTGGAACATGGCATCGGC
59737364 AATTCACCCT
Statistics
Matches: 111, Mismatches: 26, Indels: 8
0.77 0.18 0.06
Matches are distributed among these distances:
47 3 0.03
48 106 0.95
49 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
GATATGAGAGCCAGTGTAAGACCATGTTGGAACATGGCATCGGCCAC
Found at i:59737353 original size:96 final size:96
Alignment explanation
Indices: 59737184--59737359 Score: 271
Period size: 96 Copynumber: 1.8 Consensus size: 96
59737174 TGATATGTGT
* * * * *
59737184 GCCAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCACGATATGAGAGCTAGTGTAAGACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGACCACGACATGAGAGCCAGTGTAAGACCATG
59737249 ATTGGAACATGGCATTAGCGATGTTGTGAGA
66 ATTGGAACATGGCATTAGCGATGTTGTGAGA
* * *
59737280 GCCAATGTAAGACCATGTCTGGGACATGGCATCGACCTCGACATGCGAGCCAGTGTAAGACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGACCACGACATGAGAGCCAGTGTAAGACCATG
*
59737345 TTTGGAACATGGCAT
66 ATTGGAACATGGCAT
59737360 CGGCAATTCA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 71 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (96 bp):
GCCAATGTAAGACCATGTCTAGGACATGGCATCGACCACGACATGAGAGCCAGTGTAAGACCATG
ATTGGAACATGGCATTAGCGATGTTGTGAGA
Found at i:59737674 original size:16 final size:16
Alignment explanation
Indices: 59737653--59737685 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
59737643 ATGGTTGATG
59737653 TTGTTACTTACTTATA
1 TTGTTACTTACTTATA
59737669 TTGTTACTTACTTATA
1 TTGTTACTTACTTATA
59737685 T
1 T
59737686 GCAACTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.58
Consensus pattern (16 bp):
TTGTTACTTACTTATA
Found at i:59740398 original size:42 final size:42
Alignment explanation
Indices: 59740289--59740443 Score: 143
Period size: 42 Copynumber: 3.7 Consensus size: 42
59740279 CACCACACCA
* * * * * *
59740289 ATGCCACATCCCAGATATGGTCTTATATGGGATCTCGTATCA
1 ATGCCATATCCCAGATATGGTCTTACACGAGATCTCATATCG
* * * * *
59740331 ATGTCAATAGCCTAGCTATGGTCTTACACGAGACCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACACGAGATCTCATATCG
* *
59740374 ATGCCATATCCCAGATATGGTCTTACACGA-AGTTTCACAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAGA-TCTCA-TATCG
*
59740416 ATGTCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
59740444 ATAGCCTTGG
Statistics
Matches: 91, Mismatches: 19, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
41 1 0.01
42 57 0.63
43 33 0.36
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAGATCTCATATCG
Found at i:59742818 original size:46 final size:46
Alignment explanation
Indices: 59742768--59742943 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
59742758 TGGTTGAGCA
59742768 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
59742814 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
59742859 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
59742907 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59742944 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:59742924 original size:93 final size:93
Alignment explanation
Indices: 59742765--59742935 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
59742755 GGATGGTTGA
* *
59742765 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59742830 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
59742858 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59742923 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
59742936 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:59745906 original size:15 final size:15
Alignment explanation
Indices: 59745886--59745954 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
59745876 GTATCTTGGG
59745886 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
59745901 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
59745916 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
59745931 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
59745946 TTTCTTTAT
1 TTTCTTTAT
59745955 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:59745955 original size:30 final size:30
Alignment explanation
Indices: 59745877--59745964 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
59745867 CATAGTATCG
* * * *
59745877 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
59745907 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
59745937 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
59745965 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:59748506 original size:734 final size:734
Alignment explanation
Indices: 59747099--59748566 Score: 2920
Period size: 734 Copynumber: 2.0 Consensus size: 734
59747089 AGTGGTTTCG
59747099 TGACCACAAAATCCGAGATATAAATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGC
1 TGACCACAAAATCCGAGATATAAATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGC
59747164 ATGATTGTGTGAAAATTTCGTGAAGAAATTTTATGCATAAAGTGCTTAATTTGAAATTTGGGACT
66 ATGATTGTGTGAAAATTTCGTGAAGAAATTTTATGCATAAAGTGCTTAATTTGAAATTTGGGACT
59747229 AAATTGAATAATTGCAAAACTTGTGTTCTAGAAGTATTTTGCATAAAATTGAATTAGATTATTAA
131 AAATTGAATAATTGCAAAACTTGTGTTCTAGAAGTATTTTGCATAAAATTGAATTAGATTATTAA
59747294 TTAGAGGTCCTTAAAGAGTAATTTTACCAATTTCTAAGTCTATGGACAAAAATTGGACATGGATG
196 TTAGAGGTCCTTAAAGAGTAATTTTACCAATTTCTAAGTCTATGGACAAAAATTGGACATGGATG
59747359 GAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTGGTCATTTAGGGGTAAAATGAATTAAAATAC
261 GAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTGGTCATTTAGGGGTAAAATGAATTAAAATAC
59747424 AAAATTAAAAGCCAATTTTGCTCATCTTCAACCCCATGGCCGAATATAGCAAGGAGAAACCATGG
326 AAAATTAAAAGCCAATTTTGCTCATCTTCAACCCCATGGCCGAATATAGCAAGGAGAAACCATGG
59747489 CTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTTT
391 CTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTTT
59747554 ACGTTTTTGGAGTCCCGGTAGCTCGATTTAGCTTATGCTAGCAATAATTTAACCTAGGGTTTATA
456 ACGTTTTTGGAGTCCCGGTAGCTCGATTTAGCTTATGCTAGCAATAATTTAACCTAGGGTTTATA
59747619 TTTGGAAAAATACCCATAGGTGAAATTTGTGTATTTTGGTGTTTTATGATAGAATATGAGGTTTT
521 TTTGGAAAAATACCCATAGGTGAAATTTGTGTATTTTGGTGTTTTATGATAGAATATGAGGTTTT
59747684 AAATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGTGAAAACGAGCAAAAGGGCTTAATCGGT
586 AAATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGTGAAAACGAGCAAAAGGGCTTAATCGGT
59747749 AAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGGGAAAA
651 AAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGGGAAAA
59747814 ATGATCAGCATGTCATAAA
716 ATGATCAGCATGTCATAAA
59747833 TGACCACAAAATCCGAGATATAAATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGC
1 TGACCACAAAATCCGAGATATAAATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGC
59747898 ATGATTGTGTGAAAATTTCGTGAAGAAATTTTATGCATAAAGTGCTTAATTTGAAATTTGGGACT
66 ATGATTGTGTGAAAATTTCGTGAAGAAATTTTATGCATAAAGTGCTTAATTTGAAATTTGGGACT
59747963 AAATTGAATAAATTGCAAAACTTGTGTTCTAGAAGTATTTTGCATAAAATTGAATTAGATTATTA
131 AAATTGAAT-AATTGCAAAACTTGTGTTCTAGAAGTATTTTGCATAAAATTGAATTAGATTATTA
59748028 ATTAGAGGTCCTTAAAGAGTAATTTTACCAATTTCTAAGTCTATGGACAAAAATTGGACATGGAT
195 ATTAGAGGTCCTTAAAGAGTAATTTTACCAATTTCTAAGTCTATGGACAAAAATTGGACATGGAT
59748093 GGAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTGGTCATTTAGGGGTAAAATGAATTAAAATA
260 GGAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTGGTCATTTAGGGGTAAAATGAATTAAAATA
59748158 C-AAATTAAAAGCCAATTTTGCTCATCTTCAACCCCATGGCCGAATATAGCAAGGAGAAACCATG
325 CAAAATTAAAAGCCAATTTTGCTCATCTTCAACCCCATGGCCGAATATAGCAAGGAGAAACCATG
59748222 GCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTT
390 GCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTT
59748287 TACGTTTTTGGAGTCCCGGTAGCTCGATTTAGCTTATGCTAGCAATAATTTAACCTAGGGTTTAT
455 TACGTTTTTGGAGTCCCGGTAGCTCGATTTAGCTTATGCTAGCAATAATTTAACCTAGGGTTTAT
59748352 ATTTGGAAAAATACCCATAGGTGAAATTTGTGTATTTTGGTGTTTTATGATAGAATATGAGGTTT
520 ATTTGGAAAAATACCCATAGGTGAAATTTGTGTATTTTGGTGTTTTATGATAGAATATGAGGTTT
59748417 TAAATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGTGAAAACGAGCAAAAGGGCTTAATCGG
585 TAAATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGTGAAAACGAGCAAAAGGGCTTAATCGG
59748482 TAAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGGGAAA
650 TAAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGGGAAA
59748547 AATGATCAGCATGTCATAAA
715 AATGATCAGCATGTCATAAA
59748567 ACATAAGAAA
Statistics
Matches: 733, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
734 547 0.75
735 186 0.25
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.35
Consensus pattern (734 bp):
TGACCACAAAATCCGAGATATAAATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGC
ATGATTGTGTGAAAATTTCGTGAAGAAATTTTATGCATAAAGTGCTTAATTTGAAATTTGGGACT
AAATTGAATAATTGCAAAACTTGTGTTCTAGAAGTATTTTGCATAAAATTGAATTAGATTATTAA
TTAGAGGTCCTTAAAGAGTAATTTTACCAATTTCTAAGTCTATGGACAAAAATTGGACATGGATG
GAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTGGTCATTTAGGGGTAAAATGAATTAAAATAC
AAAATTAAAAGCCAATTTTGCTCATCTTCAACCCCATGGCCGAATATAGCAAGGAGAAACCATGG
CTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTTT
ACGTTTTTGGAGTCCCGGTAGCTCGATTTAGCTTATGCTAGCAATAATTTAACCTAGGGTTTATA
TTTGGAAAAATACCCATAGGTGAAATTTGTGTATTTTGGTGTTTTATGATAGAATATGAGGTTTT
AAATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGTGAAAACGAGCAAAAGGGCTTAATCGGT
AAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGGGAAAA
ATGATCAGCATGTCATAAA
Found at i:59749130 original size:46 final size:46
Alignment explanation
Indices: 59749080--59749255 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
59749070 TGGTTGAGCA
59749080 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
59749126 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
59749171 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
59749219 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59749256 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:59749236 original size:93 final size:93
Alignment explanation
Indices: 59749077--59749247 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
59749067 GGATGGTTGA
* *
59749077 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59749142 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
59749170 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59749235 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
59749248 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:59754242 original size:53 final size:54
Alignment explanation
Indices: 59754165--59754447 Score: 308
Period size: 53 Copynumber: 5.3 Consensus size: 54
59754155 CATGTCTTAA
* * * *
59754165 CATGGTCTTACGTGGTATCC-TTGCCTTGT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGGGA-CCTTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
* * ** * *
59754218 CATGGTTTTACATGGGACCTTTGCCTTATAGTAACTCATTAATGTGATGTCTTGA
1 CATGGTCTTACATGGGACCTTTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
* * **
59754273 CATGGTCTTACATGGTATCC-TTGCCTTAT-GAACTCACCAATTTCATGCCTTGG
1 CATGGTCTTACATGGGA-CCTTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
* *
59754326 CATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGA
1 CATGGTCTTACATGGGACCTTTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
** *
59754381 CATGGTCTTACAT--GATTTCTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGGGACCT-TTGCCTTATAGAACTCATCAATGCCATGCCTTGG
59754434 CATGGTCTTACATG
1 CATGGTCTTACATG
59754448 ATATCCTTAT
Statistics
Matches: 192, Mismatches: 29, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
52 4 0.02
53 100 0.52
54 14 0.07
55 72 0.38
56 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (54 bp):
CATGGTCTTACATGGGACCTTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:59754345 original size:108 final size:108
Alignment explanation
Indices: 59754155--59754548 Score: 486
Period size: 108 Copynumber: 3.7 Consensus size: 108
59754145 TTACCATTGC
* *
59754155 CATGTCTTAACATGGTCTTACGTGGTATCCTTGCCTTGT-GAACTCACCAATGCCATGCCTTGGC
1 CATGTCTTAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTTGGC
*
59754219 ATGGTTTTACATGGGACCTTTGCCTTATAGTAACTCATTAATGT
66 ATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCA-TAATGT
* * **
59754263 GATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATTTCATGCCTTGGC
1 CATGTCTTAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTTGGC
*
59754327 ATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGC
66 ATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCAT-AATGT
* * * * *
59754371 CATGTCTTGACATGGTCTTACATGAT-TTCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 CATGTCTTAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTTGGC
* * *
59754435 ATGGTCTTACAT--GA--TAT-CCTTAT-CTTAC-CA-AATGT
66 ATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATAATGT
** * * * *
59754470 CATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCAATGCCTTGG
1 CATG-TCTTAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTTGG
59754535 CATGGTCTTACATG
65 CATGGTCTTACATG
59754549 ATATCCTTAT
Statistics
Matches: 255, Mismatches: 26, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
99 8 0.03
100 18 0.07
101 49 0.19
102 3 0.01
103 6 0.02
104 2 0.01
106 2 0.01
107 12 0.05
108 155 0.61
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (108 bp):
CATGTCTTAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTTGGC
ATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATAATGT
Found at i:59754448 original size:53 final size:53
Alignment explanation
Indices: 59754165--59754550 Score: 265
Period size: 53 Copynumber: 7.3 Consensus size: 53
59754155 CATGTCTTAA
* * * * *
59754165 CATGGTCTTACGTGGTATCCTTGCCTTGT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGAT-TTCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
* ** * ** * *
59754218 CATGGTTTTACATGGGACCT-TTGCCTTATAGTAACTCATTAATGTGATGTCTTGA
1 CATGGTCTTACAT--GATTTCTTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
* * * **
59754273 CATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATTTCATGCCTTGG
1 CATGGTCTTACATGAT-TTCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
** * *
59754326 CATGGTCTTACATGGGACCT-TTGCCTTATAGTAACTCATCAATGCCATGTCTTGA
1 CATGGTCTTACAT--GATTTCTTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
*
59754381 CATGGTCTTACATGATTTCTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGATTTCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
* *** * ***
59754434 CATGGTCTTACATGA--T-AT-CCTTATCTTAC-CA--AATGTCATGTTCC-AAA
1 CATGGTCTTACATGATTTCTTGCCTTATAGAACTCATCAATGCCATG--CCTTGG
* * * * *
59754481 CATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCAATGCCTTGG
1 CATGGTCTTACATGAT-TTCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
59754535 CATGGTCTTACATGAT
1 CATGGTCTTACATGAT
59754551 ATCCTTATCT
Statistics
Matches: 250, Mismatches: 61, Indels: 43
0.71 0.17 0.12
Matches are distributed among these distances:
46 8 0.03
47 14 0.06
48 3 0.01
49 8 0.03
50 1 0.00
51 2 0.01
52 7 0.03
53 100 0.40
54 29 0.12
55 78 0.31
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (53 bp):
CATGGTCTTACATGATTTCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:59754487 original size:47 final size:47
Alignment explanation
Indices: 59754434--59754609 Score: 147
Period size: 47 Copynumber: 3.6 Consensus size: 47
59754424 CATGCCTTGG
59754434 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
* * * * * ***
59754481 CATGGTCTTACATGGTATCCTTGTCTTA-TAGAACTTATCAATGCAATGCCTTGG
1 CATGGTCTTACATGATATCCTTATCTTACCA-AA--TGTC-ATG---TTCC-AAA
* **
59754535 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCTGAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
* * *
59754582 CATAGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
59754610 GTGCCAATGC
Statistics
Matches: 99, Mismatches: 21, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
46 1 0.01
47 53 0.54
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
52 2 0.02
53 3 0.03
54 28 0.28
55 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
Found at i:59754530 original size:101 final size:100
Alignment explanation
Indices: 59754144--59754609 Score: 415
Period size: 108 Copynumber: 4.5 Consensus size: 100
59754134 TCTTTTTGAG
* * * * * *
59754144 CTTACC-ATTGCCATG-TCTTAACATGGTCTTACGTGGTATCCTTGCCTTGT-GAACTCACCAAT
1 CTTACCAAATGCCATGTTCTAAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAAT
* *
59754206 GCCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTAT
66 G-CATGCCTTGGCATGGTCTTACAT--GA--TAT-CCTTAT
* * ** ** * *
59754247 AGTAACTCATTAATGTGATG-TCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCAC
1 -CTTAC-CA--AATGCCATGTTCTAAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTAT
* *
59754310 CAATTTCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAT
62 CAA-TGCATGCCTTGGCATGGTCTTACAT--GA--TAT-CCTTAT
* * ** * *
59754355 AGTAACTCATCAATGCCATG-TCTTGACATGGTCTTACATGAT-TTCTTGCCTTATAGAACTTAT
1 -CTTAC-CA--AATGCCATGTTCTAAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTAT
59754418 CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTAT
62 CAATG-CATGCCTTGGCATGGTCTTACATGATATCCTTAT
* * *
59754458 CTTACCAAATGTCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAAT
1 CTTACCAAATGCCATGTTCTAAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAAT
59754523 GCAATGCCTTGGCATGGTCTTACATGATATCCTTAT
66 GC-ATGCCTTGGCATGGTCTTACATGATATCCTTAT
* * *
59754559 CTTACCAAATGCCATGTTCTGAACATAGTCTTACATGGTATCCTTGTCTTA
1 CTTACCAAATGCCATGTTCTAAACATGGTCTTACATGGTATCCTTGCCTTA
59754610 GTGCCAATGC
Statistics
Matches: 320, Mismatches: 32, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
99 8 0.03
100 19 0.06
101 106 0.33
102 3 0.01
103 6 0.02
104 5 0.02
105 1 0.00
106 2 0.01
107 12 0.04
108 157 0.49
109 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (100 bp):
CTTACCAAATGCCATGTTCTAAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAAT
GCATGCCTTGGCATGGTCTTACATGATATCCTTAT
Found at i:59754743 original size:92 final size:94
Alignment explanation
Indices: 59754530--59754745 Score: 237
Period size: 95 Copynumber: 2.3 Consensus size: 94
59754520 AATGCAATGC
* * *
59754530 CTTGGCATGGTCTTACATGATATCCTT-ATCTTACCAAATGCCATGTTCTGAACATAGTCTTACA
1 CTTGACATGGTCTTACATGGTATCCTTAATCATACCAAATGCCATGTTCTGAACATAGTCTTACA
* * *
59754594 TGGTATCCTTGTCTTAGTGCCAATGCCATAT
66 CGGGATCCTTGCCTTA--GCCAATGCCATAT
** * * * *
59754625 CTTGATGTGGTCTTACATGG-AGTCCTTAATCAATGCC-GATGCCATG-TCTTG-ATATGGTCTT
1 CTTGACATGGTCTTACATGGTA-TCCTTAATC-ATACCAAATGCCATGTTC-TGAACATAGTCTT
59754686 ACACGGGATCCTTGCCTTA-CCAATGCCATAT
63 ACACGGGATCCTTGCCTTAGCCAATGCCATAT
59754717 CTTGACATGGTCTTACATGGTATCCTTAA
1 CTTGACATGGTCTTACATGGTATCCTTAA
59754746 CTATCAATTC
Statistics
Matches: 102, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
92 37 0.36
93 1 0.01
94 1 0.01
95 47 0.46
96 13 0.13
97 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (94 bp):
CTTGACATGGTCTTACATGGTATCCTTAATCATACCAAATGCCATGTTCTGAACATAGTCTTACA
CGGGATCCTTGCCTTAGCCAATGCCATAT
Found at i:59754797 original size:44 final size:44
Alignment explanation
Indices: 59754748--59754833 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
59754738 ATCCTTAACT
* *
59754748 ATCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTGCC
1 ATCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTGCC
* *
59754792 ATCAATTCTTCCTTAACTGCCATGGTACAACCATGGACTTTG
1 ATCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTG
59754834 AGATATCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.34
Consensus pattern (44 bp):
ATCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTGCC
Found at i:59763977 original size:106 final size:106
Alignment explanation
Indices: 59763792--59764005 Score: 347
Period size: 106 Copynumber: 2.0 Consensus size: 106
59763782 GAAATGGTAG
* *
59763792 TTGTAAAACCCCCCGCCCGAATCCCTCGCCGGAACAGGGTTCGAAGTGTTACCCGACTTAAACTC
1 TTGTAAAACCCCCCGCCCGAATCCCTCGCCGGAACAGGGTTCGAAGTGTTACCCAACATAAACTC
59763857 AATCAATCACACAAAAACCGTACCAAAAAATTTCAATCAAT
66 AATCAATCACACAAAAACCGTACCAAAAAATTTCAATCAAT
* ** *
59763898 TTGTAACACCCCTTGCCCGAATCCCTCGCCGGAACAGGGTTCGAGGTGTTACCCAACATAAACTC
1 TTGTAAAACCCCCCGCCCGAATCCCTCGCCGGAACAGGGTTCGAAGTGTTACCCAACATAAACTC
* * *
59763963 AGTCAATCACACAAAAACCGTGCCGAAAAATTTCAATCAAT
66 AATCAATCACACAAAAACCGTACCAAAAAATTTCAATCAAT
59764004 TT
1 TT
59764006 AAAACTTTTC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
106 99 1.00
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.21
Consensus pattern (106 bp):
TTGTAAAACCCCCCGCCCGAATCCCTCGCCGGAACAGGGTTCGAAGTGTTACCCAACATAAACTC
AATCAATCACACAAAAACCGTACCAAAAAATTTCAATCAAT
Found at i:59764810 original size:45 final size:45
Alignment explanation
Indices: 59764715--59765154 Score: 374
Period size: 45 Copynumber: 10.1 Consensus size: 45
59764705 TTTTCTCAAA
* * * * *
59764715 TCACCGGCATT-TCA-CCTGCTAGGCTC-GAGGCCC-GATATCATT
1 TCACCGGCATTAT-AGCCTACTAGGCTCAAAGGCCCAAATAACATC
* **
59764757 TCACCGGCATTATAGCCTATTAGGCTCGAAA-GCCCAAATAGTATC
1 TCACCGGCATTATAGCCTACTAGGCTC-AAAGGCCCAAATAACATC
* * *
59764802 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATC
* * *
59764847 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAACATT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATC
* * * * *
59764892 TCACCGACTTTATAGCCTACTAAGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATC
* * *
59764937 TCACCGACATTATAG-C--CTA----C-----CCCGAATAACATT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATC
* * *** *
59764970 TCACCGGCATTATAGCTTGCTAGGCTCAAAGGCTTGAATAACATT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATC
* * * * *
59765015 TCACCGGCATTATAGCTTACTAGGCTGAAAGGCCCGAATAATATT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATC
* * * *
59765060 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAACATT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATC
* * * *
59765105 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATC
59765150 TCACC
1 TCACC
59765155 AGTTCTTTCC
Statistics
Matches: 341, Mismatches: 39, Indels: 33
0.83 0.09 0.08
Matches are distributed among these distances:
33 27 0.08
36 3 0.01
38 1 0.00
40 1 0.00
42 15 0.04
43 11 0.03
44 8 0.02
45 275 0.81
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATC
Found at i:59764863 original size:90 final size:90
Alignment explanation
Indices: 59764715--59765154 Score: 509
Period size: 90 Copynumber: 5.1 Consensus size: 90
59764705 TTTTCTCAAA
* *
59764715 TCACCGGCATT-TCA-CCTGCTAGGCTC-GAGGCCCG-ATATCATTTCACCGGCATTATAGCCTA
1 TCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTA
* * ** *
59764776 TTAGGCTCGAAA-GCCCAAATAGTATC
65 CTAGGCTC-AAAGGCCCGAATAACATT
* * * *
59764802 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTAC
*
59764867 TAGGCTCAAAGGCCCAAATAACATT
66 TAGGCTCAAAGGCCCGAATAACATT
* * * * *
59764892 TCACCGACTTTATAGCCTACTAAGCTCAAAGGCCCGAATAACATTTCACCGACATTATAG-C--C
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTAC
59764954 TA----C-----CCCGAATAACATT
66 TAGGCTCAAAGGCCCGAATAACATT
* ** *
59764970 TCACCGGCATTATAGCTTGCTAGGCTCAAAGGCTTGAATAACATTTCACCGGCATTATAGCTTAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTAC
* *
59765035 TAGGCTGAAAGGCCCGAATAATATT
66 TAGGCTCAAAGGCCCGAATAACATT
* * *
59765060 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAACATTTCACTGGCATTATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTAC
59765125 TAGGCTCAAAGGCCCGAATAACATT
66 TAGGCTCAAAGGCCCGAATAACATT
59765150 TCACC
1 TCACC
59765155 AGTTCTTTCC
Statistics
Matches: 297, Mismatches: 39, Indels: 31
0.81 0.11 0.08
Matches are distributed among these distances:
78 64 0.22
81 3 0.01
83 1 0.00
87 15 0.05
88 13 0.04
89 11 0.04
90 190 0.64
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (90 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTAC
TAGGCTCAAAGGCCCGAATAACATT
Found at i:59765053 original size:123 final size:127
Alignment explanation
Indices: 59764715--59765154 Score: 430
Period size: 135 Copynumber: 3.4 Consensus size: 127
59764705 TTTTCTCAAA
* * *
59764715 TCACCGGCATT-TCA-CCTGCTAGGCTC-GAGGCCCG-ATATCATTTCACCGGCATTATAGCCTA
1 TCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGACATTATAGCCTA
* * * ** * *
59764776 TTAGGCTCGAAA-GCCCAAATAGTATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAA
65 CTAAGCTC-AAAGGCCCGAATAACATTTCACCGACATTATAGCC-GCTA-G--C--A--CCCGAA
* *
59764840 TAATATC
121 TAACATT
* * *
59764847 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAACATTTCACCGACTTTATAGCCTAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGACATTATAGCCTAC
59764912 TAAGCTCAAAGGCCCGAATAACATTTCACCGACATTATAG-C-CTA-C-CCCGAATAACATT
66 TAAGCTCAAAGGCCCGAATAACATTTCACCGACATTATAGCCGCTAGCACCCGAATAACATT
* ** * *
59764970 TCACCGGCATTATAGCTTGCTAGGCTCAAAGGCTTGAATAACATTTCACCGGCATTATAGCTTAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGACATTATAGCCTAC
* * * *
59765035 TAGGCTGAAAGGCCCGAATAATATTTCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATA
66 TAAGCTCAAAGGCCCGAATAACATTTCACCGACATTATAGCC-GCTA-G--C---A-CCCGAATA
59765100 ACATT
123 ACATT
*
59765105 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACC
59765155 AGTTCTTTCC
Statistics
Matches: 260, Mismatches: 31, Indels: 31
0.81 0.10 0.10
Matches are distributed among these distances:
123 104 0.40
124 1 0.00
126 3 0.01
128 1 0.00
130 1 0.00
132 14 0.05
133 13 0.05
134 10 0.04
135 113 0.43
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (127 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGACATTATAGCCTAC
TAAGCTCAAAGGCCCGAATAACATTTCACCGACATTATAGCCGCTAGCACCCGAATAACATT
Found at i:59765089 original size:168 final size:168
Alignment explanation
Indices: 59764802--59765122 Score: 480
Period size: 168 Copynumber: 1.9 Consensus size: 168
59764792 AAATAGTATC
* *
59764802 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATCTCACCAGCATTATAGCCTAC
* *
59764867 TAGGCTCAAAGGCCCAAATAACATTTCACCGACTTTATAGCCTACTAAGCTCAAAGGCCCGAATA
66 TAGGCTCAAAGGCCCAAATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAAGCCCGAATA
59764932 ACATTTCACCGACATTATAGCCTACCCCGAATAACATT
131 ACATTTCACCGACATTATAGCCTACCCCGAATAACATT
* ** * * *
59764970 TCACCGGCATTATAGCTTGCTAGGCTCAAAGGCTTGAATAACATTTCACCGGCATTATAGCTTAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATCTCACCAGCATTATAGCCTAC
* * * * * *
59765035 TAGGCTGAAAGGCCCGAATAATATTTCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATA
66 TAGGCTCAAAGGCCCAAATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAAGCCCGAATA
* *
59765100 ACATTTCACTGGCATTATAGCCT
131 ACATTTCACCGACATTATAGCCT
59765123 GCTAGGCTCA
Statistics
Matches: 135, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
168 135 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (168 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATCTCACCAGCATTATAGCCTAC
TAGGCTCAAAGGCCCAAATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAAGCCCGAATA
ACATTTCACCGACATTATAGCCTACCCCGAATAACATT
Found at i:59765120 original size:213 final size:212
Alignment explanation
Indices: 59764745--59765154 Score: 597
Period size: 213 Copynumber: 1.9 Consensus size: 212
59764735 AGGCTCGAGG
* * **
59764745 CCCGATATCATTTCACCGGCATTATAGCCTATTAGGCTCGAAAGCCCAAATAGTATCTCACCGGC
1 CCCGATAACATTTCACCGGCATTATAGCCTACTAGGCTCGAAAGCCCAAATAACATCTCACCGGC
*
59764810 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTGCTAGGCTCA
66 ATTATAGCCTACTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTGCTAGGCTCA
* *
59764875 AAGGCCCAAATAACATTTCACCGACTTTATAGCCTACTAAGCTCAAAGGCCCGAATAACATTTCA
131 AAAGCCCAAATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAGGCCCGAATAACATTTCA
59764940 CCGACATTATAGCCTAC
196 CCGACATTATAGCCTAC
* * *** *
59764957 CCCGAATAACATTTCACCGGCATTATAGCTTGCTAGGCTC-AAAGGCTTGAATAACATTTCACCG
1 CCCG-ATAACATTTCACCGGCATTATAGCCTACTAGGCTCGAAA-GCCCAAATAACATCTCACCG
* * * *
59765021 GCATTATAGCTTACTAGGCTGAAAGGCCCGAATAATATTTCACCGGCATTATAGCCTGCTAGGCT
64 GCATTATAGCCTACTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTGCTAGGCT
* * * * *
59765086 CAAAAGCCCGAATAACATTTCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTT
129 CAAAAGCCCAAATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAGGCCCGAATAACATTT
59765151 CACC
194 CACC
59765155 AGTTCTTTCC
Statistics
Matches: 174, Mismatches: 22, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
212 7 0.04
213 167 0.96
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (212 bp):
CCCGATAACATTTCACCGGCATTATAGCCTACTAGGCTCGAAAGCCCAAATAACATCTCACCGGC
ATTATAGCCTACTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTGCTAGGCTCA
AAAGCCCAAATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAGGCCCGAATAACATTTCA
CCGACATTATAGCCTAC
Found at i:59766967 original size:40 final size:40
Alignment explanation
Indices: 59766913--59767059 Score: 217
Period size: 40 Copynumber: 3.7 Consensus size: 40
59766903 TGAATGATAC
* * * *
59766913 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
59766952 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
59766992 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
59767032 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
59767060 TTGTGGTTAT
Statistics
Matches: 100, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
39 9 0.09
40 89 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:59767071 original size:80 final size:79
Alignment explanation
Indices: 59766913--59767079 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
59766903 TGAATGATAC
* * * *
59766913 CCGGGCTAAGCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGGCAATTGT
*
59766978 GCGAGTTGCTATAT
66 GCGAGTGGCTATAT
* *
59766992 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAG-CCCGAAGGCATTTATGCGAG-TGACTATACCCGGGTTAAGACCCGAAGGCAATT
** *
59767056 GTGCTTGTGGTTATAT
64 GTGCGAGTGGCTATAT
59767072 CC-GGCTAA
1 CCGGGCTAA
59767080 ATTCGAAGAA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
79 14 0.19
80 59 0.79
81 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGGCAATTGT
GCGAGTGGCTATAT
Found at i:59775026 original size:40 final size:40
Alignment explanation
Indices: 59774972--59775173 Score: 275
Period size: 40 Copynumber: 5.1 Consensus size: 40
59774962 TGAATGATAC
* * *
59774972 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
59775011 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
59775051 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTAT-T
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
59775090 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
59775130 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
59775170 CCGG
1 CCGG
59775174 CTAAATTCGA
Statistics
Matches: 145, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 46 0.32
40 97 0.67
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:59775103 original size:79 final size:80
Alignment explanation
Indices: 59774968--59775177 Score: 302
Period size: 79 Copynumber: 2.7 Consensus size: 80
59774958 CAATTGAATG
* * * *
59774968 ATACCCGGGCTAAG-CCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
59775032 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
*
59775047 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTAT-TCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
59775110 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* ** *
59775126 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
59775178 ATTCGAAGAA
Statistics
Matches: 118, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
78 2 0.02
79 89 0.75
80 25 0.21
81 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:59776820 original size:45 final size:45
Alignment explanation
Indices: 59776725--59777164 Score: 527
Period size: 45 Copynumber: 10.1 Consensus size: 45
59776715 TTTTCTCAAA
* *
59776725 TCACCGGCATT-TCA-CCTGCTAGGCTC-GAGGCCCG-ATATCATT
1 TCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCCCGAATAACATT
** * ** *
59776767 TCACCGGCATTATAGCCTATTAGGCTCGAAA-GCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAACATT
* *
59776812 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
59776857 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* * * *
59776902 TCACCGACTTTATAGCCTACTAAGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
59776947 TCACCGACATTATAG-C--CTA----C-----CCCGAATAAGATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
59776980 TCACCGGCATTATAGCTTGCTAGGCTCAAAGGCTCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
59777025 TCACCGGCATTATAGCCTGCTAGGCTGAAAGGCCCGAATAATATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
59777070 TCACCGGCATTATAGCCTACTAGGCTCAAAAGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
59777115 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
59777160 TCACC
1 TCACC
59777165 AGTTCTTTCC
Statistics
Matches: 343, Mismatches: 37, Indels: 33
0.83 0.09 0.08
Matches are distributed among these distances:
33 26 0.08
36 3 0.01
38 1 0.00
40 1 0.00
42 15 0.04
43 11 0.03
44 8 0.02
45 278 0.81
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
Found at i:59777090 original size:168 final size:168
Alignment explanation
Indices: 59776812--59777132 Score: 525
Period size: 168 Copynumber: 1.9 Consensus size: 168
59776802 AAATAGTATC
*
59776812 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATCTCACCAGCATTATAGCCTGC
* *
59776877 TAGGCTCAAAGGCCCAAATAACATTTCACCGACTTTATAGCCTACTAAGCTCAAAGGCCCGAATA
66 TAGGCTCAAAGGCCCAAATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAAGCCCGAATA
59776942 ACATTTCACCGACATTATAGCCTACCCCGAATAAGATT
131 ACATTTCACCGACATTATAGCCTACCCCGAATAAGATT
* * * *
59776980 TCACCGGCATTATAGCTTGCTAGGCTCAAAGGCTCGAATAACATTTCACCGGCATTATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATCTCACCAGCATTATAGCCTGC
* * * * *
59777045 TAGGCTGAAAGGCCCGAATAATATTTCACCGGCATTATAGCCTACTAGGCTCAAAAGCCCGAATA
66 TAGGCTCAAAGGCCCAAATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAAGCCCGAATA
*
59777110 ACATTTCACCGGCATTATAGCCT
131 ACATTTCACCGACATTATAGCCT
59777133 GCTAGGCTCA
Statistics
Matches: 140, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
168 140 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (168 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATCTCACCAGCATTATAGCCTGC
TAGGCTCAAAGGCCCAAATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAAGCCCGAATA
ACATTTCACCGACATTATAGCCTACCCCGAATAAGATT
Found at i:59777131 original size:213 final size:213
Alignment explanation
Indices: 59776764--59777164 Score: 624
Period size: 213 Copynumber: 1.9 Consensus size: 213
59776754 GCCCGATATC
* **
59776764 ATTTCACCGGCATTATAGCCTATTAGGCTCGAAAGCCCAAATAGTATCTCACCGGCATTATAGCC
1 ATTTCACCGGCATTATAGCCTACTAGGCTCGAAAGCCCAAATAACATCTCACCGGCATTATAGCC
* *
59776829 TGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCAA
66 TGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTACTAGGCTCAAAAGCCCAA
*
59776894 ATAACATTTCACCGACTTTATAGCCTACTAAGCTCAAAGGCCCGAATAACATTTCACCGACATTA
131 ATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAGGCCCGAATAACATTTCACCGACATTA
59776959 TAGCCTACCCCGAATAAG
196 TAGCCTACCCCGAATAAG
* * * * *
59776977 ATTTCACCGGCATTATAGCTTGCTAGGCTC-AAAGGCTCGAATAACATTTCACCGGCATTATAGC
1 ATTTCACCGGCATTATAGCCTACTAGGCTCGAAA-GCCCAAATAACATCTCACCGGCATTATAGC
* * * *
59777041 CTGCTAGGCTGAAAGGCCCGAATAATATTTCACCGGCATTATAGCCTACTAGGCTCAAAAGCCCG
65 CTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTACTAGGCTCAAAAGCCCA
* * *
59777106 AATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACC
130 AATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAGGCCCGAATAACATTTCACC
59777165 AGTTCTTTCC
Statistics
Matches: 169, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
212 3 0.02
213 166 0.98
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (213 bp):
ATTTCACCGGCATTATAGCCTACTAGGCTCGAAAGCCCAAATAACATCTCACCGGCATTATAGCC
TGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTACTAGGCTCAAAAGCCCAA
ATAACATTTCACCGACATTATAGCCTACTAAGCTCAAAGGCCCGAATAACATTTCACCGACATTA
TAGCCTACCCCGAATAAG
Found at i:59778981 original size:40 final size:40
Alignment explanation
Indices: 59778927--59779073 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 40
59778917 TGAATGATAC
* * * *
59778927 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
59778966 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
59779006 CCGGGTTAAGACCAGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
59779046 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
59779074 TTGTGGTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 9 0.09
40 87 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:59779085 original size:80 final size:79
Alignment explanation
Indices: 59778927--59779093 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 79
59778917 TGAATGATAC
* * * * *
59778927 CCGGGCTAAGCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCATTTGT
1 CCGGGCTAAGCCAGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGGCAATTGT
*
59778992 GCGAGTTGCTATAT
66 GCGAGTGGCTATAT
* *
59779006 CCGGGTTAAGACCAGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAG-CCAGAAGGCATTTATGCGAG-TGACTATACCCGGGTTAAGACCCGAAGGCAATT
** *
59779070 GTGCTTGTGGTTATAT
64 GTGCGAGTGGCTATAT
59779086 CC-GGCTAA
1 CCGGGCTAA
59779094 ATTCTGAAGA
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
79 14 0.19
80 58 0.78
81 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGCCAGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGGCAATTGT
GCGAGTGGCTATAT
Found at i:59785204 original size:29 final size:29
Alignment explanation
Indices: 59785171--59785301 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
59785161 TGACGAGATC
*
59785171 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
59785200 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
59785229 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
59785258 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
59785287 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
59785302 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:59791749 original size:40 final size:40
Alignment explanation
Indices: 59791690--59791831 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
59791680 AAATTGAATG
* * *
59791690 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
59791730 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
59791770 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
59791810 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
59791832 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:59791832 original size:40 final size:39
Alignment explanation
Indices: 59791729--59791841 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
59791719 TGCTGGAAAT
* * **
59791729 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCAC
*
59791769 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
*
59791809 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
59791842 ACATGCTTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:59799554 original size:40 final size:40
Alignment explanation
Indices: 59799495--59799636 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
59799485 AAATTGAATG
* * *
59799495 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
59799535 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
59799575 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
59799615 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
59799637 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:59799637 original size:40 final size:39
Alignment explanation
Indices: 59799534--59799646 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
59799524 TGCTGGAAAT
* * **
59799534 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCAC
*
59799574 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
*
59799614 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
59799647 ACATGCTTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:59810616 original size:17 final size:18
Alignment explanation
Indices: 59810590--59810627 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
59810580 ATGATGATGA
* *
59810590 AAAAAGGAAAAGAGAAAG
1 AAAAAGGAAAAAAAAAAG
59810608 AAAAA-GAAAAAAAAAAG
1 AAAAAGGAAAAAAAAAAG
59810625 AAA
1 AAA
59810628 GGCTCTCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAAAGGAAAAAAAAAAG
Found at i:59812056 original size:40 final size:40
Alignment explanation
Indices: 59811859--59812037 Score: 297
Period size: 40 Copynumber: 4.5 Consensus size: 40
59811849 TGATAACCGC
* * *
59811859 GCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGG
59811899 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
59811939 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
59811979 GCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
59812019 GCTATGTCCCGAAGGCATT
1 GCTAAGTCCCGAAGGCATT
59812038 CAAGCGAGTA
Statistics
Matches: 133, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 1 0.01
40 132 0.99
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:59814350 original size:17 final size:17
Alignment explanation
Indices: 59814330--59814364 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
59814320 TCGAGTATTA
59814330 ATCTCTTTCGATTTCTT
1 ATCTCTTTCGATTTCTT
*
59814347 ATCTCTTTTGATTTCTT
1 ATCTCTTTCGATTTCTT
59814364 A
1 A
59814365 GTTAAGGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.20, G:0.06, T:0.60
Consensus pattern (17 bp):
ATCTCTTTCGATTTCTT
Found at i:59824055 original size:40 final size:40
Alignment explanation
Indices: 59824011--59824194 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
59824001 GCTACTCATT
*
59824011 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
59824051 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
59824091 C-AATGCCTTCGGG-CTTAGCTCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
59824129 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
59824170 CAAA-GCCTTCGGGACTTCGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59824195 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 66 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:59824134 original size:78 final size:80
Alignment explanation
Indices: 59824013--59824194 Score: 219
Period size: 78 Copynumber: 2.3 Consensus size: 80
59824003 TACTCATTCA
*
59824013 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
*
59824077 TTTAATAAC-TCGCAC
65 TTTAATAACTTAGCAC
* * **
59824092 AATGCCTTCGGG-CTTAGCTCGGA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
59824155 TTTAGTCACTTAGCAC
65 TTTAATAACTTAGCAC
* * *
59824171 AAAGCCTTCGGGACTTCGCCCGGA
1 AATGCCTTCGGGACATAGCCCGGA
59824195 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 4 0.05
78 47 0.53
79 28 0.32
80 9 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
TTAATAACTTAGCAC
Found at i:59826463 original size:29 final size:29
Alignment explanation
Indices: 59826430--59826494 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
59826420 GTGACGAGAT
59826430 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
59826459 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
59826488 CGGCACT
1 TGGCACT
59826495 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:59834360 original size:29 final size:29
Alignment explanation
Indices: 59834230--59834352 Score: 237
Period size: 29 Copynumber: 4.2 Consensus size: 29
59834220 GTGACGAGAT
59834230 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
59834259 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
59834288 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
59834317 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
59834346 CGGCACT
1 TGGCACT
59834353 GGGTGTGCGA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:59834377 original size:58 final size:58
Alignment explanation
Indices: 59834231--59834389 Score: 212
Period size: 58 Copynumber: 2.7 Consensus size: 58
59834221 TGACGAGATT
* * *
59834231 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
* *
59834289 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAC
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
** * * *
59834347 GGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCACTATGTGTGC
1 GGCACTAAGTGTGC-ATGCTCGAAAGATATGGCACTAAGTGTGC
59834390 GGGCTTAAAT
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
58 91 0.99
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
Found at i:59834377 original size:87 final size:87
Alignment explanation
Indices: 59834230--59834389 Score: 232
Period size: 87 Copynumber: 1.8 Consensus size: 87
59834220 GTGACGAGAT
* * *
59834230 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
59834295 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCATGCTGGAAATATA
** * *
59834317 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
*
59834381 TATGTGTGC
65 TAAGTGTGC
59834390 GGGCTTAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
87 63 0.98
88 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCATGCTGGAAATATA
Found at i:59834407 original size:87 final size:87
Alignment explanation
Indices: 59834230--59834418 Score: 229
Period size: 87 Copynumber: 2.2 Consensus size: 87
59834220 GTGACGAGAT
* * *
59834230 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
59834295 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCAGGCTGGAAATACA
** * *
59834317 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
* * * *
59834381 TATGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAAT-ACA
59834404 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
59834419 GAAATCGAGT
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
86 4 0.05
87 82 0.94
88 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAATACA
Found at i:59834458 original size:2 final size:2
Alignment explanation
Indices: 59834453--59834479 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
59834443 GTGCGTACTC
59834453 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
59834480 CTCCGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:59843162 original size:78 final size:80
Alignment explanation
Indices: 59843042--59843222 Score: 246
Period size: 78 Copynumber: 2.3 Consensus size: 80
59843032 TACTCGTTCA
* *
59843042 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
59843105 ATTTAGTAAC-TCGCAC
65 A-TTAGTAACTTAGCAC
**
59843121 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
59843184 TTAGTCACTTAGCAC
66 TTAGTAACTTAGCAC
*
59843199 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
59843223 CATCATTCGA
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
77 10 0.11
78 57 0.63
79 24 0.26
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTAGTAACTTAGCAC
Found at i:59843164 original size:39 final size:40
Alignment explanation
Indices: 59843040--59843222 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
59843030 GCTACTCGTT
* *
59843040 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
59843080 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
59843120 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
59843158 CAAATGCCTTC-GGATCTTAGTCCGG-ATTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATTAGTAAC-TCGCA
59843198 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59843223 CATCATTCGA
Statistics
Matches: 128, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
38 26 0.20
39 44 0.34
40 56 0.44
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:59845363 original size:40 final size:39
Alignment explanation
Indices: 59845198--59845381 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
59845188 AAATTGAATG
* * *
59845198 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
59845238 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
59845278 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
59845318 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
59845357 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
59845382 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:59845406 original size:80 final size:81
Alignment explanation
Indices: 59845238--59845426 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
59845228 GCTGGAAATT
* * * *
59845238 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
59845303 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
59845319 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
59845382 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
59845398 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
59845427 ACGAGTAGCG
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:59847961 original size:41 final size:41
Alignment explanation
Indices: 59847841--59847976 Score: 123
Period size: 41 Copynumber: 3.2 Consensus size: 41
59847831 GGAATGTTAT
* * *
59847841 ATATGGTCTTAGATAGG-ATTTCATATTGATGCCAATAACCCAG
1 ATATGGTCTT--ATAGGAATATCATAATGATGCC-ATATCCCAG
* * * * *
59847884 CTATGGTCTTACACGAAAAATCAT-ATCAATGCCATATCCCAG
1 ATATGGTCTTATA-GGAATATCATAAT-GATGCCATATCCCAG
* *
59847926 ATATGGTCTTATAGGAATCTCATAATGATGCCATATCCCAA
1 ATATGGTCTTATAGGAATATCATAATGATGCCATATCCCAG
59847967 ATATGGTCTT
1 ATATGGTCTT
59847977 CCACATAGCC
Statistics
Matches: 74, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
41 32 0.43
42 23 0.31
43 19 0.26
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (41 bp):
ATATGGTCTTATAGGAATATCATAATGATGCCATATCCCAG
Found at i:59857458 original size:457 final size:457
Alignment explanation
Indices: 59856600--59857510 Score: 1653
Period size: 457 Copynumber: 2.0 Consensus size: 457
59856590 CCCTAGGGTG
* * *
59856600 TTAATTAGAGAAAGGTCTCAATTATTCAATCTAGGGATTAGACGTTATTAGTCTTGAATAGGGAT
1 TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTAAATAGGGAT
*
59856665 AATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAATAAATCGTCCGATTCGGAGCCAG
66 AATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAATAAATCGTCCGATTCGGAACCAG
59856730 AATAACAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATCAATTTTCCCAA
131 AATAACAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATCAATTTTCCCAA
* *
59856795 AAGTAATTCCTCAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAGA
196 AAGCAATTCCTCAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAAA
59856860 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
261 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
*
59856925 TTCGACAATCCAGTCTTGCTAAAACTATACTATTATTCGATAGGTACACTTGCCTACATCGCGAT
326 TTCGACAATCCAGTCTTGCTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCGCGAT
*
59856990 AATAGTTAGTTTCAAGAACGATTAATTATAATTATTTAAAACCTATCACGAAATCACGCGATCAG
391 AATAGTTAGTTTCAAGAACGATTAATTATAAATATTTAAAACCTATCACGAAATCACGCGATCAG
59857055 TA
456 TA
59857057 TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTAAATAGGGAT
1 TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTAAATAGGGAT
59857122 AATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAATAAATCGTCCGATTCGGAACCAG
66 AATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAATAAATCGTCCGATTCGGAACCAG
** *
59857187 AATAACAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTGATTTTCCTAA
131 AATAACAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATCAATTTTCCCAA
* *
59857252 AAGCAATT-CTCCAATTCCATTCTCTGTGAATTCTTTGTTTAGATAATTAGTTTGTTAAAACAAA
196 AAGCAATTCCT-CAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAA
*
59857316 AACCTCTTTATTCTTAGGCTAGATAATAAAAAGATAGTCATTACTAGTACTTTTAGTTCCCTTGG
260 AACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGG
*
59857381 GTTCGACAATCCAGTCTTGCTAAAACTATACTACTATTTGATAGGTACACTTGCCTACATCGCGA
325 GTTCGACAATCCAGTCTTGCTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCGCGA
* *
59857446 TAATATTTAGTTTCAAGAATGATTAATTATAAATATTTAAAACCTATCACGAAATCACGCGATCA
390 TAATAGTTAGTTTCAAGAACGATTAATTATAAATATTTAAAACCTATCACGAAATCACGCGATCA
59857511 ATCGTCACCT
Statistics
Matches: 436, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
456 2 0.00
457 434 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (457 bp):
TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTAAATAGGGAT
AATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAATAAATCGTCCGATTCGGAACCAG
AATAACAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATCAATTTTCCCAA
AAGCAATTCCTCAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAAA
ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
TTCGACAATCCAGTCTTGCTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCGCGAT
AATAGTTAGTTTCAAGAACGATTAATTATAAATATTTAAAACCTATCACGAAATCACGCGATCAG
TA
Found at i:59868207 original size:24 final size:24
Alignment explanation
Indices: 59868156--59868212 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
59868146 ACAATCTAAT
* * *
59868156 GCACTATGTGTGCGGTTTACTATG
1 GCACTATGTGTGCGGTGTAATATA
59868180 GCACTATGTGTGCGAGTGTAATA-A
1 GCACTATGTGTGCG-GTGTAATATA
59868204 GCACTATGT
1 GCACTATGT
59868213 ATGCAAATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 23 0.79
25 6 0.21
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGGTGTAATATA
Found at i:59881829 original size:23 final size:23
Alignment explanation
Indices: 59881802--59881861 Score: 120
Period size: 23 Copynumber: 2.6 Consensus size: 23
59881792 TGTCCCCAAG
59881802 CACACGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
59881825 CACACGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
59881848 CACACGGGCGTGTG
1 CACACGGGCGTGTG
59881862 AGGCTTTAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.20
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGCCTC
Found at i:59884679 original size:40 final size:40
Alignment explanation
Indices: 59884624--59884840 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
59884614 TGGATGATAA
* *
59884624 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTA-TAT
*
59884664 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
*
59884704 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
* *
59884743 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
* * *
59884783 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTA-CTATAT
* *
59884823 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
59884841 TACTTGGCTT
Statistics
Matches: 165, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 55 0.33
40 110 0.67
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
Found at i:59884764 original size:79 final size:79
Alignment explanation
Indices: 59884624--59884840 Score: 307
Period size: 79 Copynumber: 2.7 Consensus size: 79
59884614 TGGATGATAA
*
59884624 CCGGGCTAAGTCCCGAAGGCATT-TGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCG--AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATT
*
59884687 TGTGCGAGTTACTATAT
63 CGTGCGAGTTACTATAT
59884704 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGT
59884769 GCGAGTTACTATAT
66 GCGAGTTACTATAT
* * * *
59884783 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
59884841 TACTTGGCTT
Statistics
Matches: 127, Mismatches: 6, Indels: 9
0.89 0.04 0.06
Matches are distributed among these distances:
78 1 0.01
79 85 0.67
80 37 0.29
81 4 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGT
GCGAGTTACTATAT
Found at i:59892803 original size:40 final size:40
Alignment explanation
Indices: 59892748--59892965 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
59892738 TGGATGATAA
* * * *
59892748 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
59892788 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
59892828 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
59892868 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
59892908 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
59892948 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
59892966 TACTTGGCTT
Statistics
Matches: 167, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 16 0.10
40 151 0.90
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:59899166 original size:29 final size:29
Alignment explanation
Indices: 59899065--59899158 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
59899055 GTGACGAGAT
59899065 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
59899094 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
59899123 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
59899152 CGGCACT
1 TGGCACT
59899159 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:59899183 original size:58 final size:58
Alignment explanation
Indices: 59899061--59899195 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
59899051 TACGGTGACG
* *
59899061 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
59899118 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
59899176 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
59899196 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:59899264 original size:2 final size:2
Alignment explanation
Indices: 59899259--59899283 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
59899249 GTGCGTACTC
59899259 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
59899284 CTCCGATCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:59907176 original size:29 final size:29
Alignment explanation
Indices: 59907046--59907161 Score: 214
Period size: 29 Copynumber: 4.0 Consensus size: 29
59907036 GTGACGAGAT
59907046 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
59907075 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
59907104 TGGCACTAAGTGTGTATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
59907133 TGGCACTAAGTGTGCATGTTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
59907162 CAGCACTGGG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 84 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:59907193 original size:58 final size:58
Alignment explanation
Indices: 59907048--59907206 Score: 176
Period size: 58 Copynumber: 2.7 Consensus size: 58
59907038 GACGAGATTG
* * * **
59907048 GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGGATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATACA
* * * *
59907106 GCACTAAGTGTGTATGCTGGAAATATATGGCACTAAGTGTGCATGTTGGAAATATACA
1 GCACTAAGTGTGGATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATACA
** * * *
59907164 GCACTGGGTGTGCGA-GCTCGAAGGGTATGGCACTATGTGTGCA
1 GCACTAAGTGTG-GATGCTCGAAAGATATGGCACTAAGTGTGCA
59907207 GGCTTAAATC
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
58 87 0.99
59 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.27
Consensus pattern (58 bp):
GCACTAAGTGTGGATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATACA
Found at i:59907193 original size:87 final size:87
Alignment explanation
Indices: 59907046--59907204 Score: 212
Period size: 87 Copynumber: 1.8 Consensus size: 87
59907036 GTGACGAGAT
** * *
59907046 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACAGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
59907111 AAGTGTGTATGCTGGAAATATA
66 AAGTGTGTATGCTGGAAATATA
* ** * *
59907133 TGGCACTAAGTGTGCATGTTGGAAATATACAGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACAGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
*
59907197 TATGTGTG
65 TAAGTGTG
59907205 CAGGCTTAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
87 60 0.98
88 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.28
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACAGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGTATGCTGGAAATATA
Found at i:59907223 original size:87 final size:87
Alignment explanation
Indices: 59907046--59907234 Score: 211
Period size: 87 Copynumber: 2.2 Consensus size: 87
59907036 GTGACGAGAT
** * *
59907046 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACAGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* * *
59907111 AAGTGTGTATGCTGGAAATATA
66 AAGTGTGCAGGCTGGAAATACA
* ** * *
59907133 TGGCACTAAGTGTGCATGTTGGAAATATACAGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACAGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
* * *
59907197 TATGTGTGCAGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAAT-ACA
59907220 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
59907235 GAAATCGAGT
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
86 4 0.05
87 80 0.94
88 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACAGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAATACA
Found at i:59907274 original size:2 final size:2
Alignment explanation
Indices: 59907269--59907298 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
59907259 GTGCATACTC
59907269 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
59907299 CCCGATCGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:59912791 original size:44 final size:43
Alignment explanation
Indices: 59912711--59912801 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 43
59912701 AATTACAAAA
* * * *
59912711 AAAAAATTAAAATAAATTTTAAAATTCAAAATTATAT-TTTTT
1 AAAAAATTAAAAAAAATTTAAAAATTCAAAAATATATGATTTT
59912753 AAAAAATTATAAAAAAATTTAAAAA-TCTAAAGAATATATGATTTT
1 AAAAAATTA-AAAAAAATTTAAAAATTC-AAA-AATATATGATTTT
59912798 AAAA
1 AAAA
59912802 TAAAAAACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
42 11 0.27
43 16 0.39
44 6 0.15
45 8 0.20
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (43 bp):
AAAAAATTAAAAAAAATTTAAAAATTCAAAAATATATGATTTT
Found at i:59915505 original size:20 final size:21
Alignment explanation
Indices: 59915480--59915537 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
59915470 TTTAAAAATT
59915480 AATAATTTTTATACTTTTT-A
1 AATAATTTTTATACTTTTTAA
*
59915500 AATAATTTTTA-ATTTTTTAA
1 AATAATTTTTATACTTTTTAA
*
59915520 AATGA-TTTTATACTTTTT
1 AATAATTTTTATACTTTTT
59915538 TTTATTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 11 0.33
20 22 0.67
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (21 bp):
AATAATTTTTATACTTTTTAA
Found at i:59916870 original size:12 final size:12
Alignment explanation
Indices: 59916853--59916880 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
59916843 ATGAATTAGA
59916853 ATGAAAGAGATG
1 ATGAAAGAGATG
59916865 ATGAAAGAGATG
1 ATGAAAGAGATG
59916877 ATGA
1 ATGA
59916881 TGATGGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.32, T:0.18
Consensus pattern (12 bp):
ATGAAAGAGATG
Done.