Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 197 of 410
Found at i:60302130 original size:28 final size:28
Alignment explanation
Indices: 60302094--60302168 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
60302084 TAAAATATGG
*
60302094 CACTCAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* *
60302122 CACTTAGTGTACGAGATATTGAGAGTGA
1 CACTTAGTGTACGAAATATTGAGAATGA
*
60302150 CACTTAGTGTGCGAAATAT
1 CACTTAGTGTACGAAATAT
60302169 CGAATGATTC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTACGAAATATTGAGAATGA
Found at i:60302334 original size:41 final size:40
Alignment explanation
Indices: 60302284--60302400 Score: 103
Period size: 40 Copynumber: 2.9 Consensus size: 40
60302274 TAATGGTGAT
*
60302284 AATCGGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTA
1 AATCGGGCTTTGAG-CTAGCAAGCCTTGTGCTGGTGAATAA
* * ** *
60302325 AATTGGGCTTATG-GCTAGCAAG-CTTATTGCCAGTGTATAA
1 AATCGGGCTT-TGAGCTAGCAAGCCTT-GTGCTGGTGAATAA
* * *
60302365 AATCAGACTTTGAGTCTAGCAGGCCTTGTGCTGGTG
1 AATCGGGCTTTGAG-CTAGCAAGCCTTGTGCTGGTG
60302401 TGAGATACAG
Statistics
Matches: 58, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
39 5 0.09
40 25 0.43
41 23 0.40
42 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (40 bp):
AATCGGGCTTTGAGCTAGCAAGCCTTGTGCTGGTGAATAA
Found at i:60304310 original size:40 final size:40
Alignment explanation
Indices: 60304232--60304414 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
60304222 TGTCCGGGCT
* * * *
60304232 AAGTCCCGAAGGCTTTTGTGCTAAGTTACTAAATCCGGGTC
1 AAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTC
* * *
60304273 AATTCCCGAAGGCATTTGTGCTAGTTACCAAAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
*
60304313 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
* * *
60304353 AAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG-C
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
* *
60304392 TAA-TTCCGAAGGCAATTGTGCGA
1 -AAGTCCCGAAGGCATTTGTGCGA
60304415 ATCACTATAA
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 17 0.13
40 90 0.71
41 19 0.15
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
Found at i:60304379 original size:80 final size:80
Alignment explanation
Indices: 60304225--60304414 Score: 247
Period size: 80 Copynumber: 2.4 Consensus size: 80
60304215 CGAATGGTGT
* * * * * *
60304225 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTCAAGTCCCGAAGGCATTC
*
60304290 GTGCTAGTTACCAAAA
65 GTGCGAGTTACCAAAA
* *
60304306 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTCAAGTCCCGAAGGCATTCG
* *
60304371 TGCGAGTTACTAAAT
66 TGCGAGTTACCAAAA
* *
60304386 CCGGGCTAA-TTCCGAAGGCAATTGTGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
60304415 ATCACTATAA
Statistics
Matches: 95, Mismatches: 14, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
79 18 0.19
80 51 0.54
81 26 0.27
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTCAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAAA
Found at i:60304438 original size:79 final size:80
Alignment explanation
Indices: 60304224--60304456 Score: 249
Period size: 79 Copynumber: 2.9 Consensus size: 80
60304214 TCGAATGGTG
* *
60304224 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAAATCCGGGTCAAT-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAAA-CCGGGTCAATGTCCCGAAGGCAT
* * *
60304288 TTGTGCTAGTTACCAAA
64 TCGTGCGAGTTACTAAA
* * * * *
60304305 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAA-GTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTA-CTAAACCGGGTCAATGTCCCGAAGGCATT
60304369 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* * * * * *
60304385 TCCGGGCTAA-TTCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCAAAGACAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AACCGGGTCAATGTCCCGAAGGCATT
*
60304448 CGAGCGAGT
65 CGTGCGAGT
60304457 CGCTATATCC
Statistics
Matches: 126, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
78 4 0.03
79 46 0.37
80 45 0.36
81 31 0.25
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAACCGGGTCAATGTCCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:60312548 original size:39 final size:40
Alignment explanation
Indices: 60312505--60312670 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
60312495 CGGAATATAA
60312505 CCGGATATAATCACGT-GCACAAATGCCTTC-GGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60312544 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
60312584 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60312624 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60312663 CCGGATAT
1 CCGGATAT
60312671 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 1 0.01
39 38 0.36
40 67 0.63
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60315437 original size:40 final size:40
Alignment explanation
Indices: 60315275--60315476 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
60315265 CGAATGATGT
*
60315275 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
60315315 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
60315354 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
60315392 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
60315433 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
60315473 CCGG
1 CCGG
60315477 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:60315439 original size:78 final size:79
Alignment explanation
Indices: 60315274--60315425 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
60315264 TCGAATGATG
* * *
60315274 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
60315339 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
60315354 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
60315417 GTGCAAGTC
65 GTGCAAGTC
60315426 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:60323480 original size:40 final size:40
Alignment explanation
Indices: 60323318--60323519 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
60323308 CGAATGATGT
*
60323318 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
60323358 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
60323397 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
60323435 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
60323476 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
60323516 CCGG
1 CCGG
60323520 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:60323482 original size:78 final size:79
Alignment explanation
Indices: 60323317--60323468 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
60323307 TCGAATGATG
* * *
60323317 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
60323382 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
60323397 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
60323460 GTGCAAGTC
65 GTGCAAGTC
60323469 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:60331550 original size:40 final size:40
Alignment explanation
Indices: 60331388--60331589 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
60331378 CGAATGATGT
*
60331388 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
60331428 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
60331467 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
60331505 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
60331546 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
60331586 CCGG
1 CCGG
60331590 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:60331552 original size:78 final size:79
Alignment explanation
Indices: 60331387--60331538 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
60331377 TCGAATGATG
* * *
60331387 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
60331452 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
60331467 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
60331530 GTGCAAGTC
65 GTGCAAGTC
60331539 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:60334879 original size:47 final size:47
Alignment explanation
Indices: 60334810--60334982 Score: 292
Period size: 47 Copynumber: 3.7 Consensus size: 47
60334800 TTTTATGTGT
*
60334810 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
60334857 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
60334904 ATATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
60334951 ATATGTGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
60334983 AAGATGTATG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:60335235 original size:37 final size:37
Alignment explanation
Indices: 60335185--60335329 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
60335175 GGAAATATAT
60335185 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
60335222 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60335259 TCCGGGTAAGACCCGATGACTACGTGTGGATATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60335296 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
60335330 TCGTTTGAGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60338712 original size:16 final size:16
Alignment explanation
Indices: 60338687--60338732 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
60338677 CTAGATCGGC
60338687 AAAA-GCCGAAAAGCT
1 AAAATGCCGAAAAGCT
60338702 AAAATGCCGAAAAGCT
1 AAAATGCCGAAAAGCT
60338718 AAAATGCCGAAAAGC
1 AAAATGCCGAAAAGC
60338733 CGGTATTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 4 0.13
16 26 0.87
ACGTcount: A:0.52, C:0.20, G:0.20, T:0.09
Consensus pattern (16 bp):
AAAATGCCGAAAAGCT
Found at i:60339190 original size:27 final size:27
Alignment explanation
Indices: 60339151--60339260 Score: 109
Period size: 27 Copynumber: 4.1 Consensus size: 27
60339141 GAAGCATTCC
60339151 GGTGGCTAC-GCCACAATTATCTGATCT
1 GGTGGCT-CTGCCACAATTATCTGATCT
* *
60339178 AGTGGCTCTGCCAC-ATGTATCTGTTCT
1 GGTGGCTCTGCCACAAT-TATCTGATCT
*
60339205 GGTGGCTCTGCCACGATTATCTGTATCT
1 GGTGGCTCTGCCACAATTATCTG-ATCT
* * * *
60339233 GGTGACTCTGTCAC-ACTATCTGTTCT
1 GGTGGCTCTGCCACAATTATCTGATCT
60339259 GG
1 GG
60339261 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 8 0.11
27 46 0.65
28 17 0.24
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATTATCTGATCT
Found at i:60339253 original size:54 final size:54
Alignment explanation
Indices: 60339151--60339260 Score: 143
Period size: 54 Copynumber: 2.0 Consensus size: 54
60339141 GAAGCATTCC
* *
60339151 GGTGGCTACGCCACAATTATCTGATCTAGTGGCTCTGCCACATGTATCTGTTCT
1 GGTGGCTACGCCACAATTATCTGATCTAGTGACTCTGCCACATCTATCTGTTCT
* * *
60339205 GGTGGCT-CTGCCACGATTATCTGTATCTGGTGACTCTGTCACA-CTATCTGTTCT
1 GGTGGCTAC-GCCACAATTATCTG-ATCTAGTGACTCTGCCACATCTATCTGTTCT
60339259 GG
1 GG
60339261 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 1 0.02
54 32 0.65
55 16 0.33
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (54 bp):
GGTGGCTACGCCACAATTATCTGATCTAGTGACTCTGCCACATCTATCTGTTCT
Found at i:60341442 original size:24 final size:25
Alignment explanation
Indices: 60341409--60341461 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 25
60341399 CTATTAGAAT
60341409 AAATCCTATCTCAATTTCATCCATC
1 AAATCCTATCTCAATTTCATCCATC
60341434 AAAT-CTATCTCAATTTCATCCATC
1 AAATCCTATCTCAATTTCATCCATC
60341458 AAAT
1 AAAT
60341462 AAATAGATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (25 bp):
AAATCCTATCTCAATTTCATCCATC
Found at i:60342252 original size:23 final size:23
Alignment explanation
Indices: 60342226--60342269 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
60342216 TGGGCATTTG
*
60342226 ATACCTTTAACAATTAGAATTCA
1 ATACATTTAACAATTAGAATTCA
60342249 ATACATTTAACAATTAGAATT
1 ATACATTTAACAATTAGAATT
60342270 TAACTTTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.36
Consensus pattern (23 bp):
ATACATTTAACAATTAGAATTCA
Found at i:60344271 original size:35 final size:35
Alignment explanation
Indices: 60344185--60344272 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 35
60344175 ATAGTTCAAT
* * ** *
60344185 TTCAATAT-AACATCGCATATGGCCAAATATGCACA
1 TTCAATATAAAC-TCACATATGACCAAATACACAAA
* **
60344220 TTCAAAATAATTTCACATATGACCAAATACACAAA
1 TTCAATATAAACTCACATATGACCAAATACACAAA
60344255 TTCAATATAAACTCACAT
1 TTCAATATAAACTCACAT
60344273 GTAATCTAAT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
35 40 0.98
36 1 0.02
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (35 bp):
TTCAATATAAACTCACATATGACCAAATACACAAA
Found at i:60344470 original size:39 final size:42
Alignment explanation
Indices: 60344427--60344521 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
60344417 CAGTTTAAAA
*
60344427 CCTGCTAGGCATAA-GCCTGA-A-TTACTCACCAGCACAAAG
1 CCTGCTAGGCACAAGGCCTGATATTTACTCACCAGCACAAAG
* * * * * *
60344466 CCTGCTAGACCCAAGGTCTGATATTTATTCACCGGCACTAAG
1 CCTGCTAGGCACAAGGCCTGATATTTACTCACCAGCACAAAG
60344508 CCTGCTAGGCACAA
1 CCTGCTAGGCACAA
60344522 AGCCCGATCA
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
39 11 0.25
40 5 0.11
41 1 0.02
42 27 0.61
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (42 bp):
CCTGCTAGGCACAAGGCCTGATATTTACTCACCAGCACAAAG
Found at i:60345437 original size:37 final size:37
Alignment explanation
Indices: 60345394--60345567 Score: 204
Period size: 37 Copynumber: 4.9 Consensus size: 37
60345384 GCTCAGACGA
* *
60345394 AATCTCCACACGAAGTTATCGGGTCTTACCCAGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
* * *
60345431 ACTCTCCACACGTAGCCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
*
60345468 AATCTCCACAC---GT-A----GTCATACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
*
60345497 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
*
60345534 AATCTCCACAC-ATAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGA-AGTCATCGGGTCTTACCCGGA
60345568 ATATATTTCC
Statistics
Matches: 117, Mismatches: 11, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
29 25 0.21
32 2 0.02
33 2 0.02
34 1 0.01
37 87 0.74
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.22
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
Found at i:60345499 original size:29 final size:29
Alignment explanation
Indices: 60345457--60345515 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
60345447 CATCGGGTCT
60345457 TACCCGGACATAATCTCCACACGTAGTCA
1 TACCCGGACATAATCTCCACACGTAGTCA
60345486 TACCCGGACATAATCTCCACACGTAGTCA
1 TACCCGGACATAATCTCCACACGTAGTCA
60345515 T
1 T
60345516 CGGGTCTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.22
Consensus pattern (29 bp):
TACCCGGACATAATCTCCACACGTAGTCA
Found at i:60345526 original size:66 final size:66
Alignment explanation
Indices: 60345420--60345552 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
60345410 TATCGGGTCT
* *
60345420 TACCCAGACATACTCTCCACACGTAGCCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 TACCCAGACATAATCTCCACACGTAGCCATCGGGTCTTACCCGGACATAATCTCCACACATAGTC
60345485 A
66 A
* *
60345486 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACATAGTC
1 TACCCAGACATAATCTCCACACGTAGCCATCGGGTCTTACCCGGACATAATCTCCACACATAGTC
60345551 A
66 A
60345552 T
1 T
60345553 CGGGTCTCAC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (66 bp):
TACCCAGACATAATCTCCACACGTAGCCATCGGGTCTTACCCGGACATAATCTCCACACATAGTC
A
Found at i:60345683 original size:48 final size:48
Alignment explanation
Indices: 60345612--60347103 Score: 2430
Period size: 48 Copynumber: 31.0 Consensus size: 48
60345602 TGTTACAACA
* * * *
60345612 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
60345660 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
60345708 TTCACATTAGCTATTCGGTTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
60345756 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
60345804 TTCACATTAGCCATTCGGCTTTATCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
60345852 TTCACATTCGCCATTCGGCTTTACCATATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
60345900 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
60345948 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
60345996 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* ** * *
60346044 TTCACATTCG-CATTCGGCTTTGTCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
60346091 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
60346139 TTCACATTAGCCATTCGACTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
60346187 TTCACATTAGCCATTCGGCTTTACCACATGTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
60346235 TTCACATTAGCCATTCGGCTTTACCACATATACTTATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
60346283 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATAAATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
60346331 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
60346379 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* **
60346427 TTCACATTCG-CATTCGGCTTTGTCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
60346474 TTCACATTAGCCATTCGGCTTTACCACATATACTTATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
60346522 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
60346570 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
60346618 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAGATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
60346666 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
60346714 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAGATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
60346762 TTCACATTAGCCATTCGGCTTTACCACATGTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
60346810 TTCACATTAGCCATTCGGCTTTACCACATATACTTATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
60346858 TTCACATTCGCCATTCGGCTTTACCACATATACATATACTTATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATAC----A--TATCACACATATAT
60346912 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
60346960 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
60347008 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAGATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
60347056 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
60347104 ATATATATAT
Statistics
Matches: 1341, Mismatches: 95, Indels: 16
0.92 0.07 0.01
Matches are distributed among these distances:
47 86 0.06
48 1208 0.90
50 1 0.00
54 46 0.03
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:60352486 original size:48 final size:48
Alignment explanation
Indices: 60352429--60352652 Score: 163
Period size: 48 Copynumber: 4.8 Consensus size: 48
60352419 ATGGTAAGAC
* * * * *
60352429 GCCAATGCCATATCTCGGATATGGTCTTACATGGGATCACATATCGAT
1 GCCAATGCCATGTCCCAGACATGGTCATACATGGGATCACATATCGAT
* * *** ** *
60352477 GCCAATGCCATGTCCCAAACATGGTCCTACATGGGATTGTAGGTCAAT
1 GCCAATGCCATGTCCCAGACATGGTCATACATGGGATCACATATCGAT
* *
60352525 GCCAATGCTATGTCCCAGACATGGTCATGCATGGGATCACATATCGAT
1 GCCAATGCCATGTCCCAGACATGGTCATACATGGGATCACATATCGAT
* * * ** * *
60352573 GCCGAT---A-G-CCCAG-CTATGGTCTTACACGAAATTACATATTGAT
1 GCCAATGCCATGTCCCAGAC-ATGGTCATACATGGGATCACATATCGAT
* * **
60352616 GCCAAAGCCATGTCCCAAACATGGTTTTACATGGGAT
1 GCCAATGCCATGTCCCAGACATGGTCATACATGGGAT
60352653 TGTACATAAC
Statistics
Matches: 132, Mismatches: 37, Indels: 14
0.72 0.20 0.08
Matches are distributed among these distances:
42 1 0.01
43 30 0.23
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 96 0.73
49 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCAATGCCATGTCCCAGACATGGTCATACATGGGATCACATATCGAT
Found at i:60355348 original size:27 final size:26
Alignment explanation
Indices: 60355318--60355376 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
60355308 CGTGGGCCGA
* *
60355318 AGCCCACT-ACAATATCATTTGGGTCAT
1 AGCCCA-TAACAAAATCAATTGGG-CAT
*
60355345 AGCCCATAACAAAATCAATTGGGCCT
1 AGCCCATAACAAAATCAATTGGGCAT
60355371 AGCCCA
1 AGCCCA
60355377 AACCAATAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (26 bp):
AGCCCATAACAAAATCAATTGGGCAT
Found at i:60356248 original size:27 final size:26
Alignment explanation
Indices: 60356218--60356419 Score: 163
Period size: 27 Copynumber: 7.5 Consensus size: 26
60356208 GATATTTTAG
* *
60356218 TAATTTTACACTACAAGGGTATTTCGA
1 TAATTTTACA-AACAGGGGTATTTCGA
* * *
60356245 TAATTTTACAAACTGGGGGTATTTTGG
1 TAATTTTACAAAC-AGGGGTATTTCGA
* *** * *
60356272 TAATTTTATAATTTGGGGGTATTTTGGG
1 TAATTTTACAA-ACAGGGGTA-TTTCGA
* *
60356300 TAATTTTATAAACTGGGGTATTTC-A
1 TAATTTTACAAACAGGGGTATTTCGA
*
60356325 GTAATTTTACAAACTGGGGGTATTTCGA
1 -TAATTTTACAAAC-AGGGGTATTTCGA
* * *
60356353 TAATTTTACAATTCAAGGGTATTTCGG
1 TAATTTTACAA-ACAGGGGTATTTCGA
*
60356380 TAATTTTACAAACTAGGGGTATTTCGG
1 TAATTTTACAAAC-AGGGGTATTTCGA
60356407 TAATTTTACAAAC
1 TAATTTTACAAAC
60356420 CAAGGTCTTA
Statistics
Matches: 145, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
26 18 0.12
27 109 0.75
28 18 0.12
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (26 bp):
TAATTTTACAAACAGGGGTATTTCGA
Found at i:60356268 original size:54 final size:53
Alignment explanation
Indices: 60356210--60356419 Score: 215
Period size: 54 Copynumber: 3.9 Consensus size: 53
60356200 CCTACAAGGA
* * *
60356210 TATTTTAGTAATTTTACACTAC-AAGGGTATTTCGATAATTTTACAAACTGGGGG
1 TATTTCAGTAATTTTACA-AACTAGGGGTATTTCGATAATTTTACAAACT-GGGG
** * ** * * * *
60356264 TATTTTGGTAATTTTATAATTTGGGGGTATTTTGGGTAATTTTATAAACTGGGG
1 TATTTCAGTAATTTTACAAACTAGGGGTA-TTTCGATAATTTTACAAACTGGGG
* * **
60356318 TATTTCAGTAATTTTACAAACTGGGGGTATTTCGATAATTTTACAATTCAAGGG
1 TATTTCAGTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAA-ACTGGGG
* *
60356372 TATTTCGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAAC
1 TATTTCAGTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAAC
60356420 CAAGGTCTTA
Statistics
Matches: 128, Mismatches: 25, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
53 15 0.12
54 96 0.75
55 17 0.13
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
TATTTCAGTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAACTGGGG
Found at i:60356319 original size:81 final size:81
Alignment explanation
Indices: 60356217--60356419 Score: 259
Period size: 81 Copynumber: 2.5 Consensus size: 81
60356207 GGATATTTTA
* * * * *
60356217 GTAATTTTACACTAC-AAGGGTATTTCGATAATTTTACAAACTGGGGGTATTTTGGTAATTTTAT
1 GTAATTTTACA-AACTAGGGGTATTTCGATAATTTTACAAACTGGGGGTATTTCGATAATTTTAC
*** *
60356281 AATTTGGGGGTATTTTGG
65 AATTCAAGGGTA-TTTCG
*
60356299 GTAATTTTATAAACT-GGGGTATTTC-AGTAATTTTACAAACTGGGGGTATTTCGATAATTTTAC
1 GTAATTTTACAAACTAGGGGTATTTCGA-TAATTTTACAAACTGGGGGTATTTCGATAATTTTAC
60356362 AATTCAAGGGTATTTCG
65 AATTCAAGGGTATTTCG
*
60356379 GTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAAC
1 GTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAAC
60356420 CAAGGTCTTA
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
80 19 0.18
81 76 0.72
82 10 0.10
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
GTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAACTGGGGGTATTTCGATAATTTTACA
ATTCAAGGGTATTTCG
Found at i:60361792 original size:40 final size:40
Alignment explanation
Indices: 60361755--60361938 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
60361745 GCTACTCGTT
*
60361755 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60361795 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
60361835 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * ** * *
60361874 CAAATGCCTTC-AGATCTTAGTCCGAATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
60361915 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
60361939 ACATCATTCG
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 31 0.26
40 76 0.63
41 13 0.11
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:60361923 original size:79 final size:81
Alignment explanation
Indices: 60361755--60361939 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
60361745 GCTACTCGTT
* * *
60361755 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
* * *
60361819 GATTTAGTAACTCGCAC
65 AATATAGTAACTAGCAC
* **
60361836 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCG
*
60361898 AATATAGTCACTTAGCA-
65 AATATAGTAAC-TAGCAC
60361915 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
60361940 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.02
79 59 0.66
80 25 0.28
81 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGA
ATATAGTAACTAGCAC
Found at i:60363949 original size:27 final size:26
Alignment explanation
Indices: 60363915--60364178 Score: 223
Period size: 27 Copynumber: 9.8 Consensus size: 26
60363905 TTTTACCCAA
*
60363915 GGGTATTTCAGTAATTTTGCAAACTGG
1 GGGTATTTC-GTAATTTTACAAACTGG
* *
60363942 GGGTATTTCGGTAATTTTAC-AATTTG
1 GGGTATTTC-GTAATTTTACAAACTGG
* *
60363968 GGGTATTTCGGTAATTTTAC-AATTTG
1 GGGTATTTC-GTAATTTTACAAACTGG
* *
60363994 GGGTATTTTGGGTAATTTTACAAACT-A
1 GGGTA-TTT-CGTAATTTTACAAACTGG
* * *
60364021 GGGTATTTCAATAATTTTACAAACCGA
1 GGGTATTTC-GTAATTTTACAAACTGG
* * *
60364048 GGGTATTTCGATAATTTTACAACCCGA
1 GGGTATTTCG-TAATTTTACAAACTGG
*
60364075 GGGTATTTCGATAATTTTACAAA-TCAG
1 GGGTATTTCG-TAATTTTACAAACT-GG
* *
60364102 GGGTATTTCGATAATTTTAC-AATTCGA
1 GGGTATTTCG-TAATTTTACAAACT-GG
*
60364129 GGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTCG-TAATTTTACAAACTGG
60364156 GGGTATTTCGGTAATTTTACAAA
1 GGGTATTTC-GTAATTTTACAAA
60364179 TTGGAGTCCT
Statistics
Matches: 206, Mismatches: 21, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
26 53 0.26
27 146 0.71
28 7 0.03
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (26 bp):
GGGTATTTCGTAATTTTACAAACTGG
Found at i:60363996 original size:53 final size:53
Alignment explanation
Indices: 60363889--60364182 Score: 307
Period size: 54 Copynumber: 5.5 Consensus size: 53
60363879 TTTACCGTAC
* *
60363889 AGGGGTATTTCGGTAATTTTACCCAA---GGGTATTTC-AGTAATTTTGCAAACT
1 AGGGGTATTTCGGTAATTTTA-CAAATTGGGGTATTTCGA-TAATTTTACAAACT
* * * *
60363940 GGGGGTATTTCGGTAATTTTACAATTTGGGGTATTTCGGTAATTTTAC-AATT
1 AGGGGTATTTCGGTAATTTTACAAATTGGGGTATTTCGATAATTTTACAAACT
* * * * *
60363992 TGGGGTATTTTGGGTAATTTTACAAACTAGGGTATTTCAATAATTTTACAAAC-
1 AGGGGTA-TTTCGGTAATTTTACAAATTGGGGTATTTCGATAATTTTACAAACT
* * ***
60364045 CGAGGGTATTTCGATAATTTTACAACCCGAGGGTATTTCGATAATTTTACAAA-T
1 AG-GGGTATTTCGGTAATTTTACAAATTG-GGGTATTTCGATAATTTTACAAACT
*
60364099 CAGGGGTATTTCGATAATTTTAC-AATTCGAGGGTATTTCGATAATTTTACAAACT
1 -AGGGGTATTTCGGTAATTTTACAAATT-G-GGGTATTTCGATAATTTTACAAACT
60364154 AGGGGTATTTCGGTAATTTTACAAATTGG
1 AGGGGTATTTCGGTAATTTTACAAATTGG
60364183 AGTCCTAAAG
Statistics
Matches: 204, Mismatches: 26, Indels: 24
0.80 0.10 0.09
Matches are distributed among these distances:
50 2 0.01
51 20 0.10
52 9 0.04
53 71 0.35
54 96 0.47
55 6 0.03
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (53 bp):
AGGGGTATTTCGGTAATTTTACAAATTGGGGTATTTCGATAATTTTACAAACT
Found at i:60364179 original size:81 final size:80
Alignment explanation
Indices: 60363891--60364178 Score: 343
Period size: 81 Copynumber: 3.6 Consensus size: 80
60363881 TACCGTACAG
* * * * * *
60363891 GGGTATTTCGGTAATTTTAC--CCAAGGGTATTTCAGTAATTTTGCAAACTGGGGGTATTTCGGT
1 GGGTATTTCGATAATTTTACAACCAGGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCGAT
*
60363954 AATTTTACAATTTG-
66 AATTTTACAATTCGA
* *** * *
60363968 GGGTATTTCGGTAATTTTACAATTTGGGGTATTTTGGGTAATTTTACAAACTA-GGGTATTTCAA
1 GGGTATTTCGATAATTTTACAACCAGGGGTA-TTTCGGTAATTTTACAAACTAGGGGTATTTCGA
**
60364032 TAATTTTACAAACCGA
65 TAATTTTACAATTCGA
* *
60364048 GGGTATTTCGATAATTTTACAACCCGAGGGTATTTCGATAATTTTACAAA-TCAGGGGTATTTCG
1 GGGTATTTCGATAATTTTACAACCAG-GGGTATTTCGGTAATTTTACAAACT-AGGGGTATTTCG
60364112 ATAATTTTACAATTCGA
64 ATAATTTTACAATTCGA
*
60364129 GGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAA
1 GGGTATTTCGATAATTTTAC-AACCAGGGGTATTTCGGTAATTTTACAAA
60364179 TTGGAGTCCT
Statistics
Matches: 178, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
77 20 0.11
79 27 0.15
80 56 0.31
81 71 0.40
82 4 0.02
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.39
Consensus pattern (80 bp):
GGGTATTTCGATAATTTTACAACCAGGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCGAT
AATTTTACAATTCGA
Found at i:60364560 original size:239 final size:238
Alignment explanation
Indices: 60364142--60364624 Score: 770
Period size: 239 Copynumber: 2.0 Consensus size: 238
60364132 TATTTCGATA
*** *
60364142 ATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAATTGGAGTCCTAAAGACCTAACAGAAGGT
1 ATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAACAAGAGTCCTAAAGACCCAACAGAAGGT
60364207 CCACCGTCACCTCAGCAACTTAAGTAACCTAAACAAACATAACGATGCAAGTGGGCCTAAGGCTT
66 CCACCGTCACCTCAGCAACTTAAGTAACCTAAACAAACATAACGATGCAAGTGGGCCTAAGGCTT
** *
60364272 ATTACTCAGCCCAAGTGGGCCCAGATGCTCGTGTGGCCCATTTAGCCTAAATTTAGATATGGCTA
131 ATTACTCAGCCCAAGTGGGCCCAGACACTCGTGTGGCCCATTTAGCCTAAATTTAGATACGGCTA
*
60364337 TGTGTACACCATAGCCTAGTTAATTAATAGCCACTTATCATAG
196 TGTGTACACCATAGCCCAGTTAATTAATAGCCACTTATCATAG
*
60364380 ATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAACCAAG-GTCTTAAAGACCCAACAGAAGG
1 ATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAA-CAAGAGTCCTAAAGACCCAACAGAAGG
* * * *
60364444 TCCACCGTCACCTTGAGCGACTTAAGTGACCTAAACAGACATAACGATGCAAGTGGGCCTAAGGC
65 TCCACCGTCACC-TCAGCAACTTAAGTAACCTAAACAAACATAACGATGCAAGTGGGCCTAAGGC
*
60364509 TTATTACTCGGCCCAAGTGGGCCCAGACACTCGTGTGGCCCATTTAGCCTAAATTTAGATACGGC
129 TTATTACTCAGCCCAAGTGGGCCCAGACACTCGTGTGGCCCATTTAGCCTAAATTTAGATACGGC
* * * * *
60364574 TATGTGTACACTATAGCCCGGTTCATTAATAGTCACTTATCGTAG
194 TATGTGTACACCATAGCCCAGTTAATTAATAGCCACTTATCATAG
60364619 ATTTTA
1 ATTTTA
60364625 TCTGTGTGGG
Statistics
Matches: 224, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
238 69 0.31
239 155 0.69
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (238 bp):
ATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAACAAGAGTCCTAAAGACCCAACAGAAGGT
CCACCGTCACCTCAGCAACTTAAGTAACCTAAACAAACATAACGATGCAAGTGGGCCTAAGGCTT
ATTACTCAGCCCAAGTGGGCCCAGACACTCGTGTGGCCCATTTAGCCTAAATTTAGATACGGCTA
TGTGTACACCATAGCCCAGTTAATTAATAGCCACTTATCATAG
Found at i:60367249 original size:2 final size:2
Alignment explanation
Indices: 60367242--60367283 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
60367232 CAAGTCATTC
* *
60367242 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60367284 TTTCCTCCTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60369220 original size:42 final size:42
Alignment explanation
Indices: 60369169--60369250 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
60369159 TAACACGGGC
* *
60369169 GTGTCTTTGGCCGTGTGAGGCACACGACCGAGCCACACGGAT
1 GTGTCTTTGGCCATGTGAGACACACGACCGAGCCACACGGAT
* *
60369211 GTGTCTTTGGCCATGTGAGACACACGGCCGAGCTACACGG
1 GTGTCTTTGGCCATGTGAGACACACGACCGAGCCACACGG
60369251 GCGTGCGTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.20
Consensus pattern (42 bp):
GTGTCTTTGGCCATGTGAGACACACGACCGAGCCACACGGAT
Found at i:60371852 original size:5 final size:5
Alignment explanation
Indices: 60371842--60371873 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
60371832 TTGTGTGTTC
60371842 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
60371874 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:60371856 original size:9 final size:9
Alignment explanation
Indices: 60371842--60371872 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
60371832 TTGTGTGTTC
60371842 TTTATTTTA
1 TTTATTTTA
60371851 TTTATTTTA
1 TTTATTTTA
60371860 TTTTATTTTA
1 -TTTATTTTA
60371870 TTT
1 TTT
60371873 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:60376287 original size:5 final size:5
Alignment explanation
Indices: 60376277--60376308 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
60376267 TTGTGTGTTC
60376277 TTTAT TTTAT TTT-T TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
60376309 TCACATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTAT
Found at i:60376296 original size:14 final size:15
Alignment explanation
Indices: 60376277--60376308 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
60376267 TTGTGTGTTC
60376277 TTTATTTTATTTT-T
1 TTTATTTTATTTTAT
60376291 TTTATTTTATTTTAT
1 TTTATTTTATTTTAT
60376306 TTT
1 TTT
60376309 TCACATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTATTTTATTTTAT
Found at i:60377689 original size:45 final size:45
Alignment explanation
Indices: 60377596--60377754 Score: 179
Period size: 45 Copynumber: 3.6 Consensus size: 45
60377586 CTGGCGTTTC
*
60377596 ACCTGCTAGGCTCG-AA-GCCCG-ATA-TCATTTCACCGACATTATA
1 ACCTGCTAGGCTCGAAAGGCCCGAATAGT-ATCTCACCG-CATTATA
*
60377639 GCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCAGCATTATA
1 ACCTGCTAGGCTCGAAAGGCCCGAATAGTATCTCACC-GCATTATA
* *
60377684 ACCTGCTAGGGTC-AAAGGCCCAAATAGTATCTCACCGGCATTATA
1 ACCTGCTAGGCTCGAAAGGCCCGAATAGTATCTCACC-GCATTATA
* *
60377729 GCCTGCTAGGCT-TAAAGGCCCGAATA
1 ACCTGCTAGGCTCGAAAGGCCCGAATA
60377755 ATACTGTGCA
Statistics
Matches: 101, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
43 13 0.13
44 10 0.10
45 76 0.75
46 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
ACCTGCTAGGCTCGAAAGGCCCGAATAGTATCTCACCGCATTATA
Found at i:60378614 original size:46 final size:47
Alignment explanation
Indices: 60378563--60378657 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
60378553 AAAATTTTCT
*
60378563 TTAACTAAGTAACTTATCC-GAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
60378609 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
60378656 TT
1 TT
60378658 TAAATTCAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 19 0.40
47 28 0.60
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:60385248 original size:45 final size:45
Alignment explanation
Indices: 60385151--60385322 Score: 210
Period size: 45 Copynumber: 3.9 Consensus size: 45
60385141 CTGAATTTAT
* * * *
60385151 TCACCGGCATTTTA-CCTGCTAGGATCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
*
60385193 TCACCGGCATTATAGCCAGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
*
60385238 TCACCGGCATTATAACCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
60385283 TTACCGACATTATAGCCTGCTAGGCTCAAAGGCCCTAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
60385323 ATACTGTGCG
Statistics
Matches: 114, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
42 13 0.11
43 10 0.09
44 10 0.09
45 80 0.70
46 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:60386181 original size:47 final size:47
Alignment explanation
Indices: 60386129--60386224 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
60386119 AAAATTTTCT
*
60386129 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
*
60386176 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
60386223 TT
1 TT
60386225 TAAATTCAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.30
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:60389224 original size:44 final size:42
Alignment explanation
Indices: 60389174--60389278 Score: 122
Period size: 44 Copynumber: 2.5 Consensus size: 42
60389164 TGAAATATCA
* * * *
60389174 TGTAAGACCGTGTCTGGGACA-CAAGCTTCGATTTGAGATTTACG
1 TGTAAGACCATGTCTGGGACATC-AGCATC-ATATCAGATTT-CG
*
60389218 TGTAAGACCATGTCTGGGACATCAGCATCATATCTGATTTCG
1 TGTAAGACCATGTCTGGGACATCAGCATCATATCAGATTTCG
*
60389260 TGTAAGACCCTGTCTGGGA
1 TGTAAGACCATGTCTGGGA
60389279 TAGAGGCATC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
42 20 0.37
43 8 0.15
44 25 0.46
45 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATCAGCATCATATCAGATTTCG
Found at i:60389274 original size:42 final size:44
Alignment explanation
Indices: 60389174--60389321 Score: 142
Period size: 43 Copynumber: 3.4 Consensus size: 44
60389164 TGAAATATCA
* * * *
60389174 TGTAAGACCGTGTCTGGGACACAAGCTTCGATTTGAGATTTACG
1 TGTAAGACCATGTCTGGGACACAAGCATCGATATCAGATTTACG
*
60389218 TGTAAGACCATGTCTGGGACATC-AGCATC-ATATCTGATTT-CG
1 TGTAAGACCATGTCTGGGACA-CAAGCATCGATATCAGATTTACG
* * * * * * *
60389260 TGTAAGACCCTGTCTGGGATAGAGGCATCGATATTA-AATTACA
1 TGTAAGACCATGTCTGGGACACAAGCATCGATATCAGATTTACG
*
60389303 TGTAAGACCACGTCTGGGA
1 TGTAAGACCATGTCTGGGA
60389322 TGTTGGCATT
Statistics
Matches: 85, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 29 0.34
43 30 0.35
44 25 0.29
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACACAAGCATCGATATCAGATTTACG
Found at i:60392417 original size:43 final size:42
Alignment explanation
Indices: 60392313--60392432 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 42
60392303 AGGGTCACTA
* *
60392313 AGATTACGTGTAAGACCATACCTGGGATATGGCATCGAAATG
1 AGATTACGTGTAAGACCATACCTGCGATATGGCATCGAAACG
* *
60392355 AGACTT-CGTGTAA-AGCCATAGCT-CGACTATTGGCATCGATACG
1 AGA-TTACGTGTAAGA-CCATACCTGCGA-TA-TGGCATCGAAACG
* * *
60392398 AGATTACATGTAAGACCATATCTGGGATATGGCAT
1 AGATTACGTGTAAGACCATACCTGCGATATGGCAT
60392433 TGGTATGTTA
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
41 3 0.05
42 27 0.42
43 31 0.48
44 3 0.05
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATACCTGCGATATGGCATCGAAACG
Found at i:60409184 original size:40 final size:40
Alignment explanation
Indices: 60409076--60409325 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
60409066 CGGGATTTAA
* * * * *
60409076 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
60409116 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60409156 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60409196 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60409236 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60409276 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60409316 CCGGATATAT
1 CCGGATATAT
60409326 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:60419018 original size:38 final size:38
Alignment explanation
Indices: 60418976--60419100 Score: 250
Period size: 38 Copynumber: 3.3 Consensus size: 38
60418966 ATAGACATGC
60418976 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
60419014 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
60419052 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
60419090 ATGTTCGGCCA
1 ATGTTCGGCCA
60419101 TAGGTAAGCA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 87 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.31
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
Found at i:60419790 original size:40 final size:40
Alignment explanation
Indices: 60419696--60419920 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 40
60419686 TATTCGAATG
* *
60419696 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTA-GTGACT
* * *
60419737 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAG-TGACT
* * *
60419777 ATATCCGGGCTAAGACCCGAAGGCATTTC-TGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCA-TTCGTGCTAGTGACT
* * * *
60419817 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
*
60419857 ATATCCGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTC-GTGCTAGTGACT
*
60419897 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
60419921 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 4 0.03
40 119 0.76
41 32 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
Found at i:60419866 original size:80 final size:79
Alignment explanation
Indices: 60419696--60419956 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 79
60419686 TATTCGAATG
* * *
60419696 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGG-CTAAGACCCGAAGGC
*
60419761 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTCGCT
* * * *
60419777 ATATCCGGGCTAAGACCCGAAGGCATTTCTGCTAGCGATTATATCCAGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGACCCGAAGGCA
* *
60419842 TTTGTGCTAG-CGACT
65 TTCGTGCGAGTCG-CT
* * *
60419857 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGACCCGAAGGCA
* * *
60419922 TT-GTGCAAGTAGTT
65 TTCGTGCGAGTCGCT
*
60419936 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
60419957 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 94 0.61
81 33 0.21
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGACCCGAAGGCAT
TCGTGCGAGTCGCT
Found at i:60419910 original size:120 final size:121
Alignment explanation
Indices: 60419696--60419920 Score: 323
Period size: 120 Copynumber: 1.9 Consensus size: 121
60419686 TATTCGAATG
* * * *
60419696 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
60419761 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTCTGCTAGCGATT
66 ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTCTGCTAGCGATT
* *
60419817 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
60419880 CA-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
65 CATTC-GTGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
60419921 CTTGTGCAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
119 5 0.05
120 57 0.61
121 31 0.33
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (121 bp):
ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTCTGCTAGCGATT
Found at i:60424585 original size:40 final size:39
Alignment explanation
Indices: 60424432--60424632 Score: 185
Period size: 40 Copynumber: 5.1 Consensus size: 39
60424422 ATGATGTCCG
* * *
60424432 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
*
60424471 GGACTAAGAT-CCTAAGGCATTTGTGCGAGTTACTAAATCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
60424511 GGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAATCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
60424551 GAGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CC
1 G-GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
* * ** * *
60424591 GGGCTATGTCCCGAAGGTATTTGAACGAGTTGCTATATCC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
60424631 GG
1 GG
60424633 TTAAACTCCG
Statistics
Matches: 137, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
39 6 0.04
40 119 0.87
41 12 0.09
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:60424605 original size:80 final size:81
Alignment explanation
Indices: 60424428--60424613 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 81
60424418 TCGAATGATG
* *
60424428 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCTAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
*
60424492 TGTGCGAGTTACTAAA
66 TGTGCGAGCTACTAAA
* * * *
60424508 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTACTAAATCC-GAGTTAAG-TCCCGAAGGC
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGA-CTAAGAT-CCGAAGGC
60424569 ATTTGTGCGAGCTACTATAA
63 ATTTGTGCGAGCTACTA-AA
* *
60424589 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60424614 AACGAGTTGC
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGCTACTAAA
Found at i:60426861 original size:39 final size:40
Alignment explanation
Indices: 60426683--60426865 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
60426673 CCGCACCAAG
* * * * * * * *
60426683 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
60426723 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
60426763 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
60426803 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
60426842 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
60426866 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:60432234 original size:44 final size:43
Alignment explanation
Indices: 60432164--60432269 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 43
60432154 TGTGTTATCG
* *
60432164 TGTAAGACCACGTATGGGA-CGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGATAG-TGGCATCGA-TATATGA-TTACA
** * *
60432208 TGTAAGACCTTGTCTGGGATAGTGGCATTGATATTTGATTACA
1 TGTAAGACCACGTCTGGGATAGTGGCATCGATATATGATTACA
60432251 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
60432270 CGTTGGCATT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
43 23 0.44
44 28 0.54
45 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATAGTGGCATCGATATATGATTACA
Found at i:60432279 original size:43 final size:44
Alignment explanation
Indices: 60432164--60432283 Score: 140
Period size: 43 Copynumber: 2.8 Consensus size: 44
60432154 TGTGTTATCG
* *
60432164 TGTAAGACCACGTATGGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATTGA-TATATGATTTACA
** * *
60432208 TGTAAGACCTTGTCTGGGATAG-TGGCATTGATATTTGA-TTACA
1 TGTAAGACCACGTCTGGGA-CGTTGGCATTGATATATGATTTACA
60432251 TGTAAGACCACGTCTGGGACGTTGGCATT-ATAT
1 TGTAAGACCACGTCTGGGACGTTGGCATTGATAT
60432284 GAGCTTTCCA
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
42 5 0.08
43 30 0.47
44 28 0.44
45 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGATATATGATTTACA
Found at i:60434018 original size:30 final size:30
Alignment explanation
Indices: 60433963--60434122 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
60433953 ATAGTGAATC
60433963 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
60433992 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
60434022 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
60434051 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
60434079 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
60434109 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60434123 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:60434055 original size:59 final size:57
Alignment explanation
Indices: 60433963--60434122 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
60433953 ATAGTGAATC
*
60433963 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
60434022 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
60434079 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
60434123 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:60441193 original size:25 final size:27
Alignment explanation
Indices: 60441176--60441304 Score: 132
Period size: 29 Copynumber: 4.6 Consensus size: 27
60441166 ATAGTGAATC
**
60441176 CGCACACTTAGTGCTATATATTTAGCT
1 CGCACACTTAGTGCTATATATGAAGCT
**
60441203 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-A--TGAAGCT
**
60441233 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATA--TGAAGCT
* *
60441262 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAT-ATGAAGCT
60441290 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60441305 GTACAATTTT
Statistics
Matches: 94, Mismatches: 4, Indels: 7
0.90 0.04 0.07
Matches are distributed among these distances:
27 19 0.20
28 20 0.21
29 29 0.31
30 26 0.28
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATATGAAGCT
Found at i:60441235 original size:30 final size:30
Alignment explanation
Indices: 60441176--60441333 Score: 204
Period size: 30 Copynumber: 5.5 Consensus size: 30
60441166 ATAGTGAATC
60441176 CGCACACTTAGTGCTATAT-A-TTT-AGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
60441203 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
60441233 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
60441262 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
60441290 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
60441320 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60441334 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 5, Indels: 13
0.87 0.04 0.10
Matches are distributed among these distances:
27 21 0.18
28 23 0.19
29 32 0.27
30 41 0.35
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:60441249 original size:57 final size:57
Alignment explanation
Indices: 60441176--60441333 Score: 205
Period size: 57 Copynumber: 2.8 Consensus size: 57
60441166 ATAGTGAATC
*
60441176 CGCACACTTAGTGCTATATA-TTT-AGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
60441233 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
60441290 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
60441334 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
56 2 0.02
57 40 0.44
58 24 0.26
59 25 0.27
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:60444816 original size:38 final size:38
Alignment explanation
Indices: 60444776--60444936 Score: 121
Period size: 38 Copynumber: 4.1 Consensus size: 38
60444766 CATATCATTT
** *
60444776 CACAGGCATTACACCTGCTAGGCACGAAGGCCCGAATT
1 CACAGGCACGACACCTGCTAGGCACGAAGGCCCGAATA
* * *
60444814 CACCGGCACGA-AGCCTGCTAGGCACAAAGGCCTGAATA
1 CACAGGCACGACA-CCTGCTAGGCACGAAGGCCCGAATA
* *
60444852 CACA-TCACCGGCACTGCTGCTAGGCACGAAGGCCCGAATA
1 CACAGGCA-CGACAC--CTGCTAGGCACGAAGGCCCGAATA
* *
60444892 CACA-TCACCGGCACTAAGCCTGCTAGGCATGAAGGCCCGAATA
1 CACAGGCA-C-G-AC--A-CCTGCTAGGCACGAAGGCCCGAATA
60444935 CA
1 CA
60444937 TATCACCGGC
Statistics
Matches: 100, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
37 3 0.03
38 36 0.36
39 1 0.01
40 31 0.31
41 1 0.01
42 1 0.01
43 25 0.25
44 1 0.01
45 1 0.01
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.13
Consensus pattern (38 bp):
CACAGGCACGACACCTGCTAGGCACGAAGGCCCGAATA
Found at i:60444927 original size:83 final size:78
Alignment explanation
Indices: 60444790--60444949 Score: 230
Period size: 83 Copynumber: 2.0 Consensus size: 78
60444780 GGCATTACAC
*
60444790 CTGCTAGGCACGAAGGCCCGAATTCACCGGCACGAAGCCTGCTAGGCACAAAGGCCTGAATACAC
1 CTGCTAGGCACGAAGGCCCGAATTCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
60444855 ATCACCGGCACTG
66 ATCACCGGCACTG
* **
60444868 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCATGAAGGCCCGAA
1 CTGCTAGGCACGAAGGCCCGAAT-----TCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAA
*
60444933 TACATATCACCGGCACT
61 TACACATCACCGGCACT
60444950 AGGCCTACGG
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
78 23 0.32
83 49 0.68
ACGTcount: A:0.29, C:0.33, G:0.24, T:0.14
Consensus pattern (78 bp):
CTGCTAGGCACGAAGGCCCGAATTCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
ATCACCGGCACTG
Found at i:60444929 original size:43 final size:43
Alignment explanation
Indices: 60444789--60444955 Score: 224
Period size: 43 Copynumber: 4.1 Consensus size: 43
60444779 AGGCATTACA
*
60444789 CCTGCTAGGCACGAAGGCCCGAAT-----TCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAG
* *
60444827 CCTGCTAGGCACAAAGGCCTGAATACACATCACCGGCACT--G
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAG
60444868 -CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAG
* * *
60444910 CCTGCTAGGCATGAAGGCCCGAATACATATCACCGGCACTAGG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAG
60444953 CCT
1 CCT
60444956 ACGGGATTTA
Statistics
Matches: 113, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
38 22 0.19
40 37 0.33
41 1 0.01
42 1 0.01
43 52 0.46
ACGTcount: A:0.28, C:0.34, G:0.25, T:0.14
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAG
Found at i:60454011 original size:40 final size:40
Alignment explanation
Indices: 60453956--60454171 Score: 339
Period size: 40 Copynumber: 5.5 Consensus size: 40
60453946 CGGATGATAA
*
60453956 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
*
60453996 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
60454036 CCGGGCT-AGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
*
60454075 CCGGGCTAAGACCCGTAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
* * * *
60454115 CCGGGCTAGGACCTGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
60454155 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
60454172 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 49 0.30
40 113 0.69
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
Found at i:60454095 original size:79 final size:79
Alignment explanation
Indices: 60453956--60454171 Score: 346
Period size: 79 Copynumber: 2.7 Consensus size: 79
60453946 CGGATGATAA
60453956 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
1 CCGGGCT-AGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
60454021 TGCGAGTTGCTGTAT
65 TGCGAGTTGCTGTAT
* * *
60454036 CCGGGCTAGACCCGAAGGCATTTGTGCGAGTTGCTGTATCCGGGCTAAGACCCGTAGGCATTTGT
1 CCGGGCTAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTAT
60454101 GCGAGTTGCTGTAT
66 GCGAGTTGCTGTAT
* *
60454115 CCGGGCTAGGACCTGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAA-ATCCCGAAG
1 CCGGGCTA-GACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGA-CCCGAAG
60454172 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
78 1 0.01
79 89 0.70
80 37 0.29
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (79 bp):
CCGGGCTAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTAT
GCGAGTTGCTGTAT
Found at i:60454169 original size:119 final size:119
Alignment explanation
Indices: 60453956--60454171 Score: 344
Period size: 119 Copynumber: 1.8 Consensus size: 119
60453946 CGGATGATAA
60453956 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
* *
60454021 TGCGAGTTGCTGTATCCGGGCTAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
66 TGCGAGTTGCTATATCCGGGCTAAACCCGAAGGCATTTGTGCGAGTTGCTGTAT
* * * * *
60454075 CCGGGCTAAGACCCGTAGGCATTTGTGCGAGTTGCTGTATCCGGGCTAGGACCTGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
60454140 TGCGAGTTGTTATATCC-GGCTAAATCCCGAAG
66 TGCGAGTTGCTATATCCGGGCTAAA-CCCGAAG
60454172 ATACTTGGGT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
118 6 0.07
119 82 0.93
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGCTATATCCGGGCTAAACCCGAAGGCATTTGTGCGAGTTGCTGTAT
Found at i:60454440 original size:22 final size:22
Alignment explanation
Indices: 60454398--60454441 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
60454388 AAAATGTGCA
* *
60454398 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
60454420 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
60454442 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:60457410 original size:42 final size:42
Alignment explanation
Indices: 60457351--60457434 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
60457341 AATATCATCG
60457351 ATGTTGGCTCAGAAATATGTAAGAAAGGGGTGTGAAGCATAC
1 ATGTTGGCTCAGAAATATGTAAGAAAGGGGTGTGAAGCATAC
60457393 ATGTTGGCTCAGAAATATGTAAGAAAGGGGTGTGAAGCATAC
1 ATGTTGGCTCAGAAATATGTAAGAAAGGGGTGTGAAGCATAC
60457435 CTTGCGTATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.10, G:0.31, T:0.24
Consensus pattern (42 bp):
ATGTTGGCTCAGAAATATGTAAGAAAGGGGTGTGAAGCATAC
Found at i:60459918 original size:27 final size:28
Alignment explanation
Indices: 60459862--60459931 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
60459852 AAACTTGTAC
60459862 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
60459890 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
60459917 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60459932 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:60459942 original size:27 final size:27
Alignment explanation
Indices: 60459862--60459943 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
60459852 AAACTTGTAC
* *
60459862 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
60459890 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
60459917 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
60459944 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:60465930 original size:40 final size:40
Alignment explanation
Indices: 60465864--60466030 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
60465854 AAATTGAATG
* * *
60465864 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
60465903 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
60465943 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
60465983 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
60466023 ATATCCGG
1 ATATCCGG
60466031 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:60473579 original size:40 final size:40
Alignment explanation
Indices: 60473534--60473700 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
60473524 CGGAATATAA
60473534 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60473574 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
60473614 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60473654 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60473693 CCGGATAT
1 CCGGATAT
60473701 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60475660 original size:40 final size:40
Alignment explanation
Indices: 60475558--60475725 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
60475548 AAATTGAATG
* * * * **
60475558 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* **
60475598 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
60475638 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGATT
* * * *
60475678 CTATCGGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTGATT
60475718 ATATCCGG
1 ATATCCGG
60475726 TTATATTCCG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 4 0.04
40 98 0.94
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:60482953 original size:46 final size:46
Alignment explanation
Indices: 60482902--60483083 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
60482892 AGTTAAATAT
60482902 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
60482948 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
60482994 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
60483040 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
60483084 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:60483141 original size:47 final size:47
Alignment explanation
Indices: 60483087--60483197 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
60483077 ATGTATGAGA
* * *
60483087 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
60483134 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
60483181 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
60483198 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:60485972 original size:40 final size:40
Alignment explanation
Indices: 60485913--60486014 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
60485903 AAATTGAATG
* * *
60485913 ATATCCGGGCTAAGCCCCGAAGAAAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGAAAATTATGCTAGAAACT
* * * ***
60485953 ATATCCGGGTTAAGACCCGAAGACAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGAAAATTATGCTAGAAACT
60485993 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
60486015 GCATTCGTGC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGAAAATTATGCTAGAAACT
Found at i:60491402 original size:27 final size:28
Alignment explanation
Indices: 60491346--60491415 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
60491336 AAACTTGTAC
60491346 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
60491374 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
60491401 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60491416 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:60491426 original size:27 final size:27
Alignment explanation
Indices: 60491346--60491427 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
60491336 AAACTTGTAC
* *
60491346 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
60491374 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
60491401 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
60491428 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:60496994 original size:40 final size:40
Alignment explanation
Indices: 60496939--60497066 Score: 213
Period size: 40 Copynumber: 3.2 Consensus size: 40
60496929 CGGATGATAA
60496939 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
60496979 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
60497019 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
60497059 CC-GGCTAA
1 CCGGGCTAA
60497067 ATCCTGAAGA
Statistics
Matches: 81, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 5 0.06
40 76 0.94
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:60497344 original size:22 final size:22
Alignment explanation
Indices: 60497302--60497346 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
60497292 AAAATGTGCA
* *
60497302 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
60497324 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
60497346 T
1 T
60497347 GAAACTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.44
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:60502574 original size:104 final size:105
Alignment explanation
Indices: 60502397--60502656 Score: 258
Period size: 104 Copynumber: 2.5 Consensus size: 105
60502387 CATGGGCAAT
* ** * * * **
60502397 GACATGGGCGTGTGCCTAAGCTGTGTGAGCCATTCAGGCAAGGACATGGGCGTGTGTTTGGGCTG
1 GACATGGGCGTGTGCCTAGGCCATGTGAGCCATACAGGCAAGGACATGGGCATGTATCAGGGCTG
* * * * *
60502462 TGTAACTCATTGTGTACAG-TTTAG-ACTGACATGGTCAG-G
66 TGTAACTCACTATGTA-AGATTTAGAAC-CACACGGGCAGAG
* * *
60502501 GACATGGGCGTGTACCTAGGCCATATGAGCCATACAGGCAAGGACATGGGCATGTATCCAGGTC-
1 GACATGGGCGTGTGCCTAGGCCATGTGAGCCATACAGGCAAGGACATGGGCATGTAT-CAGGGCT
* * * * *
60502565 GTGTGACTCACTATTTATGATTTAGAACCATACGGGCAGAT
65 GTGTAACTCACTATGTAAGATTTAGAACCACACGGGCAGAG
* *
60502606 GACATGGGCATGTGCCCAGGCCATGTGAGCCATACAGGCAAGGACATGGGC
1 GACATGGGCGTGTGCCTAGGCCATGTGAGCCATACAGGCAAGGACATGGGC
60502657 GTGTGTCTAG
Statistics
Matches: 127, Mismatches: 25, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
103 1 0.01
104 74 0.58
105 52 0.41
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.23
Consensus pattern (105 bp):
GACATGGGCGTGTGCCTAGGCCATGTGAGCCATACAGGCAAGGACATGGGCATGTATCAGGGCTG
TGTAACTCACTATGTAAGATTTAGAACCACACGGGCAGAG
Found at i:60502653 original size:42 final size:43
Alignment explanation
Indices: 60502592--60502674 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 43
60502582 TGATTTAGAA
* *
60502592 CCATACGGGCAGATGACATGGGCATGTGCCCAGGCCATGTGAG
1 CCATACAGGCAGAGGACATGGGCATGTGCCCAGGCCATGTGAG
* * *
60502635 CCATACAGGCA-AGGACATGGGCGTGTGTCTAGGCCATGTG
1 CCATACAGGCAGAGGACATGGGCATGTGCCCAGGCCATGTG
60502675 GCATATGAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 25 0.71
43 10 0.29
ACGTcount: A:0.23, C:0.24, G:0.35, T:0.18
Consensus pattern (43 bp):
CCATACAGGCAGAGGACATGGGCATGTGCCCAGGCCATGTGAG
Found at i:60502818 original size:9 final size:9
Alignment explanation
Indices: 60502804--60502834 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
60502794 TAAGATTGAT
60502804 ATATGGATG
1 ATATGGATG
60502813 ATATGGATG
1 ATATGGATG
60502822 ATATGGATG
1 ATATGGATG
60502831 ATAT
1 ATAT
60502835 ATACGATATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (9 bp):
ATATGGATG
Found at i:60502842 original size:18 final size:18
Alignment explanation
Indices: 60502804--60502843 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
60502794 TAAGATTGAT
* *
60502804 ATATGGATGATATGGATG
1 ATATGGATGATATAGACG
*
60502822 ATATGGATGATATATACG
1 ATATGGATGATATAGACG
60502840 ATAT
1 ATAT
60502844 CTGAACATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.35
Consensus pattern (18 bp):
ATATGGATGATATAGACG
Found at i:60503689 original size:15 final size:15
Alignment explanation
Indices: 60503671--60503704 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
60503661 TGAATTGCGA
60503671 TGTTTTGCTCTGTTC
1 TGTTTTGCTCTGTTC
*
60503686 TGTTTTGCTTTGTTC
1 TGTTTTGCTCTGTTC
60503701 TGTT
1 TGTT
60503705 ATACTACCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.15, G:0.21, T:0.65
Consensus pattern (15 bp):
TGTTTTGCTCTGTTC
Found at i:60505635 original size:28 final size:28
Alignment explanation
Indices: 60505570--60505670 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
60505560 ATAGTGAATC
*
60505570 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
60505599 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
60505627 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
60505657 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60505671 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60513594 original size:28 final size:28
Alignment explanation
Indices: 60513529--60513629 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
60513519 ATAGTGAATC
*
60513529 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
60513558 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
60513586 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
60513616 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60513630 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60516045 original size:39 final size:39
Alignment explanation
Indices: 60515986--60516064 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
60515976 TATTACACAT
* *
60515986 ATAATCACCTAACATACAAGCATATATCTCAATACTCAA
1 ATAATCACATAACATACAAGCATATATCCCAATACTCAA
* *
60516025 ATAATCACATAGCATTCAAGCATATATCCCAATACTCAA
1 ATAATCACATAACATACAAGCATATATCCCAATACTCAA
60516064 A
1 A
60516065 AAACATATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.46, C:0.25, G:0.04, T:0.25
Consensus pattern (39 bp):
ATAATCACATAACATACAAGCATATATCCCAATACTCAA
Found at i:60519445 original size:40 final size:40
Alignment explanation
Indices: 60519343--60519510 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
60519333 AAATTGAATG
* * * *
60519343 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GGAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAA-TT
* ***
60519383 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
60519423 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
60519463 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
60519503 ATATCCGG
1 ATATCCGG
60519511 TTATATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.04
40 100 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:60527414 original size:40 final size:40
Alignment explanation
Indices: 60527348--60527514 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
60527338 AAATTGAATG
* * *
60527348 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
60527387 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
60527427 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
60527467 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
60527507 ATATCCGG
1 ATATCCGG
60527515 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:60528459 original size:29 final size:29
Alignment explanation
Indices: 60528427--60528585 Score: 214
Period size: 29 Copynumber: 5.5 Consensus size: 29
60528417 ATAGTGAATC
60528427 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
60528456 CGCACACTTAGTGCTATATAATTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
60528485 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
60528514 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
* * * * *
60528542 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAGCT
60528572 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60528586 CAATCTTGTC
Statistics
Matches: 117, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.02
28 20 0.17
29 77 0.66
30 17 0.15
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:60535695 original size:30 final size:30
Alignment explanation
Indices: 60535640--60535799 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
60535630 ATAGTGAATC
60535640 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
60535669 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
60535699 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
60535728 CTCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
60535756 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
60535786 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60535800 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 21 0.18
29 47 0.40
30 47 0.40
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:60535734 original size:59 final size:57
Alignment explanation
Indices: 60535640--60535799 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
60535630 ATAGTGAATC
*
60535640 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
60535699 CGCACACTTAGTGCTATATATTTTCAGCTCTCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
60535756 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
60535800 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 49 0.54
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:60538075 original size:93 final size:93
Alignment explanation
Indices: 60537967--60538136 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
60537957 GCCCCTAAGT
* * *
60537967 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60538032 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
60538060 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60538125 CGAGTTCGGATG
66 CGAGTTCGGATG
60538137 GTCAACCATC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60538134 original size:46 final size:46
Alignment explanation
Indices: 60537962--60538134 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
60537952 AACCCGCCCC
* * * *
60537962 TAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
60538008 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
60538056 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
60538101 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60538135 TGGTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:60538589 original size:29 final size:29
Alignment explanation
Indices: 60538557--60538615 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
60538547 ATTTAATACG
60538557 AACTTTAAAAAAATTACACTTTTGCCCCT
1 AACTTTAAAAAAATTACACTTTTGCCCCT
*** *
60538586 AACTTTTGCATAATTACACTTTTGCCCCT
1 AACTTTAAAAAAATTACACTTTTGCCCCT
60538615 A
1 A
60538616 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.37
Consensus pattern (29 bp):
AACTTTAAAAAAATTACACTTTTGCCCCT
Found at i:60541633 original size:37 final size:37
Alignment explanation
Indices: 60541574--60541682 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
60541564 AGCTCAGACG
* *
60541574 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
60541611 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
60541648 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
60541683 ATATATTTTC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:60541941 original size:47 final size:47
Alignment explanation
Indices: 60541889--60542082 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
60541879 CATACATATT
* * * *
60541889 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
60541936 TCACATTGGCCATTCGGCCTCATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
60541983 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
60542030 TCACATTGGCCATTCGGCCTTATCTCATACATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
60542077 TCACAT
1 TCACAT
60542083 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:60542010 original size:22 final size:22
Alignment explanation
Indices: 60541982--60542053 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
60541972 GCTCACATTC
60541982 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
60542004 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
60542028 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
60542051 ATC
1 ATC
60542054 TCATACATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:60545214 original size:20 final size:20
Alignment explanation
Indices: 60545180--60545231 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
60545170 CGACTTATCT
* *
60545180 ACACGGGCATATCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
*
60545200 ACATGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
60545220 ACACGGGCGTGT
1 ACACGGGCGTGT
60545232 GACCCCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.23, C:0.35, G:0.29, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:60551934 original size:11 final size:11
Alignment explanation
Indices: 60551890--60551934 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
60551880 TCTACGGCTG
* *
60551890 TTTGTTGTTGT
1 TTTGTTATTAT
60551901 TTTGTTATTAT
1 TTTGTTATTAT
* *
60551912 ATTGTTACTAT
1 TTTGTTATTAT
60551923 TTTGTTATTAT
1 TTTGTTATTAT
60551934 T
1 T
60551935 ATTTGGATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.16, C:0.02, G:0.13, T:0.69
Consensus pattern (11 bp):
TTTGTTATTAT
Found at i:60552741 original size:20 final size:20
Alignment explanation
Indices: 60552716--60552821 Score: 56
Period size: 20 Copynumber: 5.0 Consensus size: 20
60552706 TGATTTTAAT
60552716 ATTTTAATATATAAAATATA
1 ATTTTAATATATAAAATATA
* *
60552736 ATTTTAAATAATTTTAAGCAATAAA
1 ATTTT-AAT-A-TATAA--AATATA
* * *
60552761 CATTATT-TTTTATAAAATTTA
1 -ATT-TTAATATATAAAATATA
*
60552782 ATTATAATATATAAAATAT-
1 ATTTTAATATATAAAATATA
*
60552801 ATTTTAA-ATATTTAAATATA
1 ATTTTAATATA-TAAAATATA
60552821 A
1 A
60552822 CCATTAAATA
Statistics
Matches: 63, Mismatches: 13, Indels: 20
0.66 0.14 0.21
Matches are distributed among these distances:
18 3 0.05
19 14 0.22
20 19 0.30
21 7 0.11
22 1 0.02
23 8 0.13
25 6 0.10
26 3 0.05
27 2 0.03
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (20 bp):
ATTTTAATATATAAAATATA
Found at i:60553809 original size:7 final size:7
Alignment explanation
Indices: 60553799--60553844 Score: 83
Period size: 7 Copynumber: 6.6 Consensus size: 7
60553789 CAAAAATAAA
60553799 AATCTTC
1 AATCTTC
60553806 AATCTTC
1 AATCTTC
*
60553813 GATCTTC
1 AATCTTC
60553820 AATCTTC
1 AATCTTC
60553827 AATCTTC
1 AATCTTC
60553834 AATCTTC
1 AATCTTC
60553841 AATC
1 AATC
60553845 AAATACCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.28, C:0.28, G:0.02, T:0.41
Consensus pattern (7 bp):
AATCTTC
Found at i:60557078 original size:37 final size:37
Alignment explanation
Indices: 60557037--60557110 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
60557027 TAACTCCGTT
*
60557037 ACCCTACTAAACCATCTACTACATCCATCACCCCCAC
1 ACCCTACTAAACCATCCACTACATCCATCACCCCCAC
*
60557074 ACCCTACTAAACCATCCACTACCTCCATCACCCCCAC
1 ACCCTACTAAACCATCCACTACATCCATCACCCCCAC
60557111 TAACTCTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.18
Consensus pattern (37 bp):
ACCCTACTAAACCATCCACTACATCCATCACCCCCAC
Found at i:60557112 original size:18 final size:18
Alignment explanation
Indices: 60557089--60557124 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
60557079 ACTAAACCAT
*
60557089 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
*
60557107 CCACTAACTCTATCACCC
1 CCACTAACTCCATCACCC
60557125 TACTTGTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.56, G:0.00, T:0.19
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:60557535 original size:19 final size:18
Alignment explanation
Indices: 60557511--60557547 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
60557501 TTATGTTTCA
60557511 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
60557530 TATTATTATATATTTATT
1 TATTATTATATATTTATT
60557548 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:60557549 original size:21 final size:21
Alignment explanation
Indices: 60557511--60557566 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
60557501 TTATGTTTCA
60557511 TATTATTATATTATTTA-T-T-
1 TATTATTATA-TATTTATTATG
60557530 TATTATTATATATTTATTATG
1 TATTATTATATATTTATTATG
*
60557551 TA-AATATATATATTTA
1 TATTAT-TATATATTTA
60557567 AGCGAAGTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 6 0.19
19 11 0.34
20 3 0.09
21 12 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
TATTATTATATATTTATTATG
Found at i:60557559 original size:17 final size:14
Alignment explanation
Indices: 60557519--60557549 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
60557509 CATATTATTA
*
60557519 TATTATTTATTTAT
1 TATTATATATTTAT
60557533 TATTATATATTTAT
1 TATTATATATTTAT
60557547 TAT
1 TAT
60557550 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:60558231 original size:126 final size:126
Alignment explanation
Indices: 60558006--60558249 Score: 425
Period size: 126 Copynumber: 1.9 Consensus size: 126
60557996 CATTGATCTT
* *
60558006 CTCTCAAAATTTTTCAAAATAAAAGCAATGTTCGGTATTTAAAGAATTTGAAGAATCGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAAGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
*
60558071 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGGCTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
* *
60558132 CTCTCAAAAATTTTCAAAATAAAGGTAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAAGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
* *
60558197 ACGTACTGGGCTTCGCTTTCTTTGTTTGTTTTGAATATTTGAATATCCTCTTA
66 ACGTACTGGGCTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
60558250 AGGCTAAAAC
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 111 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.39
Consensus pattern (126 bp):
CTCTCAAAAATTTTCAAAATAAAAGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
ACGTACTGGGCTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:60560134 original size:21 final size:23
Alignment explanation
Indices: 60560097--60560142 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
60560087 TTTATTAATG
60560097 TTTTATAATATTATTTTTAAAAA
1 TTTTATAATATTATTTTTAAAAA
*
60560120 TTTTA-AATA-TATTTTTTAAAA
1 TTTTATAATATTATTTTTAAAAA
60560141 TT
1 TT
60560143 ATTTTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 13 0.59
22 4 0.18
23 5 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTTATAATATTATTTTTAAAAA
Found at i:60560144 original size:34 final size:34
Alignment explanation
Indices: 60560097--60560212 Score: 122
Period size: 34 Copynumber: 3.6 Consensus size: 34
60560087 TTTATTAATG
* *
60560097 TTTTATAATATTATTTTTAAAAATTTTAAATATA
1 TTTTTTAAAATTATTTTTAAAAATTTTAAATATA
*
60560131 TTTTTTAAAATTATTTTTTAAAA-TTTAAATATTA
1 TTTTTTAAAATTATTTTTAAAAATTTTAAATA-TA
60560165 TTTTTT--AA--A-TTTT--AAATTTTAAATATA
1 TTTTTTAAAATTATTTTTAAAAATTTTAAATATA
* *
60560192 GTTTTTGAAATTATTTTTAAA
1 TTTTTTAAAATTATTTTTAAA
60560213 TATATTCAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
27 10 0.14
28 8 0.12
29 6 0.09
30 1 0.01
31 1 0.01
32 6 0.09
33 8 0.12
34 29 0.42
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (34 bp):
TTTTTTAAAATTATTTTTAAAAATTTTAAATATA
Found at i:60560166 original size:21 final size:21
Alignment explanation
Indices: 60560134--60560181 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
60560124 AAATATATTT
60560134 TTTAAA-ATTATTTTTTAAAA
1 TTTAAATATTATTTTTTAAAA
*
60560154 TTTAAATATTATTTTTTAAAT
1 TTTAAATATTATTTTTTAAAA
60560175 TTTAAAT
1 TTTAAAT
60560182 TTTAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTAAATATTATTTTTTAAAA
Found at i:60560173 original size:14 final size:14
Alignment explanation
Indices: 60560120--60560215 Score: 63
Period size: 13 Copynumber: 7.7 Consensus size: 14
60560110 TTTTTAAAAA
60560120 TTTTAAATA-TATT
1 TTTTAAATATTATT
60560133 TTTTAAA-ATTATT
1 TTTTAAATATTATT
60560146 TTTT-AA-A--A--
1 TTTTAAATATTATT
60560154 -TTTAAATATTATT
1 TTTTAAATATTATT
* **
60560167 TTTTAAATTTTAAA
1 TTTTAAATATTATT
*
60560181 TTTTAAATA-TAGT
1 TTTTAAATATTATT
*
60560194 TTTTGAA-ATTA-T
1 TTTTAAATATTATT
60560206 TTTTAAATAT
1 TTTTAAATAT
60560216 ATTCAAACTT
Statistics
Matches: 65, Mismatches: 8, Indels: 20
0.70 0.09 0.22
Matches are distributed among these distances:
7 3 0.05
8 2 0.03
9 1 0.02
10 1 0.02
11 1 0.02
12 12 0.18
13 27 0.42
14 18 0.28
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (14 bp):
TTTTAAATATTATT
Found at i:60560177 original size:7 final size:7
Alignment explanation
Indices: 60560146--60560188 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
60560136 TAAAATTATT
60560146 TTTTAAA
1 TTTTAAA
*
60560153 ATTTAAA
1 TTTTAAA
* **
60560160 TATTATT
1 TTTTAAA
60560167 TTTTAAA
1 TTTTAAA
60560174 TTTTAAA
1 TTTTAAA
60560181 TTTTAAA
1 TTTTAAA
60560188 T
1 T
60560189 ATAGTTTTTG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TTTTAAA
Found at i:60560178 original size:28 final size:28
Alignment explanation
Indices: 60560146--60560203 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
60560136 TAAAATTATT
*
60560146 TTTTAAAATTTAAATATTA-TTTTTTAAA
1 TTTTAAAATTTAAATA-TAGTTTTTGAAA
*
60560174 TTTTAAATTTTAAATATAGTTTTTGAAA
1 TTTTAAAATTTAAATATAGTTTTTGAAA
60560202 TT
1 TT
60560204 ATTTTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (28 bp):
TTTTAAAATTTAAATATAGTTTTTGAAA
Found at i:60560208 original size:12 final size:12
Alignment explanation
Indices: 60560097--60560218 Score: 64
Period size: 14 Copynumber: 10.1 Consensus size: 12
60560087 TTTATTAATG
60560097 TTTTATAATATTAT
1 TTTTA-AATA-TAT
60560111 TTTTAAA-A-A-
1 TTTTAAATATAT
60560120 TTTTAAATATATT
1 TTTTAAATATA-T
60560133 TTTTAAA-ATTAT
1 TTTTAAATA-TAT
*
60560145 TTTTTAA-A-A-
1 TTTTAAATATAT
60560154 -TTTAAATATTATT
1 TTTTAAATA-TA-T
* *
60560167 TTTTAAATTTTAAA
1 TTTTAAA-TAT-AT
60560181 TTTTAAATATAGT
1 TTTTAAATATA-T
60560194 TTTTGAAAT-TAT
1 TTTT-AAATATAT
60560206 TTTTAAATATAT
1 TTTTAAATATAT
60560218 T
1 T
60560219 CAAACTTTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 34
0.68 0.05 0.27
Matches are distributed among these distances:
8 5 0.06
9 8 0.09
10 3 0.03
11 6 0.07
12 20 0.23
13 19 0.22
14 23 0.27
15 2 0.02
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (12 bp):
TTTTAAATATAT
Done.