Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 199 of 410
Found at i:60860165 original size:93 final size:93
Alignment explanation
Indices: 60860006--60860177 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
60859996 AGGATATTTG
* *
60860006 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
60860071 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
60860099 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGA
60860163 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
60860178 ACTTATGGGT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:60862584 original size:2 final size:2
Alignment explanation
Indices: 60862577--60862612 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
60862567 GGAAGCTGAC
60862577 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60862613 GTTAAGCGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60866142 original size:29 final size:29
Alignment explanation
Indices: 60866100--60866202 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
60866090 AAAATTGTAC
*
60866100 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
60866129 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
60866158 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
60866188 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60866203 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
29 52 0.72
30 20 0.28
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:60868880 original size:46 final size:46
Alignment explanation
Indices: 60868827--60869002 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
60868817 TATTTGGGCA
60868827 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
60868873 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
60868920 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
60868966 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60869003 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:60868982 original size:93 final size:93
Alignment explanation
Indices: 60868823--60868994 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60868813 AGGATATTTG
* *
60868823 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60868888 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
60868916 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60868981 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
60868995 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:60871966 original size:15 final size:15
Alignment explanation
Indices: 60871946--60872014 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
60871936 GTATCTTGGG
60871946 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
60871961 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
60871976 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
60871991 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
60872006 TTTCTTTAT
1 TTTCTTTAT
60872015 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:60872015 original size:30 final size:30
Alignment explanation
Indices: 60871937--60872024 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
60871927 CATAGTATCG
* * * *
60871937 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
60871967 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
60871997 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
60872025 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:60874441 original size:46 final size:46
Alignment explanation
Indices: 60874388--60874563 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
60874378 TATTTGGGCA
60874388 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
60874434 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
60874481 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
60874527 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60874564 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:60874543 original size:93 final size:93
Alignment explanation
Indices: 60874384--60874555 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60874374 AGGATATTTG
* *
60874384 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60874449 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
60874477 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60874542 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
60874556 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:60882474 original size:29 final size:29
Alignment explanation
Indices: 60882361--60882462 Score: 195
Period size: 29 Copynumber: 3.5 Consensus size: 29
60882351 AAAATTGTAC
*
60882361 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
60882390 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
60882419 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
60882448 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60882463 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:60884538 original size:6 final size:6
Alignment explanation
Indices: 60884508--60884607 Score: 71
Period size: 6 Copynumber: 16.3 Consensus size: 6
60884498 AAGAAACATT
* * *
60884508 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
60884556 ATTAG- GTGACAGA ACCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
60884606 AT
1 AT
60884608 GTGAATGTAA
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
5 4 0.06
6 61 0.85
7 6 0.08
8 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:60884604 original size:25 final size:25
Alignment explanation
Indices: 60884517--60884607 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 25
60884507 TATCAGAACT
* *
60884517 AGAATCAAAATGAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCAGGTAA-C
* * *
60884541 AGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
60884566 AGAACCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
60884591 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
60884608 GTGAATGTAA
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
24 15 0.28
25 37 0.70
26 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:60884765 original size:27 final size:26
Alignment explanation
Indices: 60884725--60884860 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 26
60884715 GACACGGCTG
* *
60884725 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
60884751 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
60884778 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
*
60884805 CCAGAAACAGAATATTGTTGCAGAGCCA
1 CCAG-AACAG-ATATTGTGGCAGAGCCA
* *
60884833 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAGAGCCA
60884860 C
1 C
60884861 TTAACAGAAT
Statistics
Matches: 97, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
26 12 0.12
27 58 0.60
28 24 0.25
29 3 0.03
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:60884833 original size:55 final size:53
Alignment explanation
Indices: 60884725--60884860 Score: 182
Period size: 55 Copynumber: 2.5 Consensus size: 53
60884715 GACACGGCTG
* * * *
60884725 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGGCAAAGCCACCAGAAACAGATATTGTGGCAGAGCCA
* *
60884778 CCAGAACAGATATTTGTGGCATAGCCACCAGAAACAGAATATTGTTGCAGAGCCA
1 CCAGAACAGATA-TTGTGGCAAAGCCACCAGAAACAG-ATATTGTGGCAGAGCCA
*
60884833 CCAGAATCAGATAATGTGGCAAAGCCAC
1 CCAGAA-CAGATATTGTGGCAAAGCCAC
60884861 TTAACAGAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
53 12 0.16
54 20 0.27
55 35 0.48
56 6 0.08
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (53 bp):
CCAGAACAGATATTGTGGCAAAGCCACCAGAAACAGATATTGTGGCAGAGCCA
Found at i:60884886 original size:82 final size:80
Alignment explanation
Indices: 60884725--60884878 Score: 172
Period size: 82 Copynumber: 1.9 Consensus size: 80
60884715 GACACGGCTG
* * *
60884725 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATA
1 CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAAAGCCACCAGAACAGATA
** *
60884790 TTTGTGGCATAGCCA
66 TACGTGGCAAAGCCA
**
60884805 CCAGAAACAGAATATTGTTG-CAGAGCCACCAGA-ATCAGATAATGTGGCAAAGCCA-CTTAACA
1 CCAG-AACAG-ATATTG-TGACAGAGCCACCAGATA-CAGATAATGTGGCAAAGCCACCAGAACA
60884867 GA-ATACGTGGCA
62 GATATACGTGGCA
60884879 CAAAGCCATC
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
80 12 0.19
81 13 0.21
82 36 0.57
83 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (80 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAAAGCCACCAGAACAGATA
TACGTGGCAAAGCCA
Found at i:60885066 original size:22 final size:22
Alignment explanation
Indices: 60885018--60885076 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
60885008 GTAAATACGT
*
60885018 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
60885040 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
60885062 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
60885077 TGATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:60885564 original size:55 final size:54
Alignment explanation
Indices: 60885453--60885619 Score: 237
Period size: 55 Copynumber: 3.1 Consensus size: 54
60885443 GGTATCTCGA
* * *
60885453 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTATAGAGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
* * *
60885507 TAATTCTACCCTAAAGGGGTATTTTGGGTAATTCTACCTTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTA-TTTCGGTAATTCTACCTTACAGGGGTATTTCAG
* * *
60885562 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTA-TTCAG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
60885615 TAATT
1 TAATT
60885620 TGTAAATCAA
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 9 0.09
54 43 0.43
55 48 0.48
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
Found at i:60885566 original size:82 final size:82
Alignment explanation
Indices: 60885453--60885611 Score: 241
Period size: 82 Copynumber: 1.9 Consensus size: 82
60885443 GGTATCTCGA
* * *
60885453 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTATAGAGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTAGATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCC
60885518 TA-AAGGGGTATTTTGGG
66 TACAA-GGGTATTTTGGG
* *
60885535 TAATTCTACCTTACAGGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
1 TAATTCTACCCTACAGGGGTA-TTTAGATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACC
60885599 CTACAAGGGTATT
65 CTACAAGGGTATT
60885612 CAGTAATTTG
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
82 64 0.91
83 6 0.09
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (82 bp):
TAATTCTACCCTACAGGGGTATTTAGATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCC
TACAAGGGTATTTTGGG
Found at i:60885611 original size:27 final size:27
Alignment explanation
Indices: 60885425--60885619 Score: 193
Period size: 27 Copynumber: 7.2 Consensus size: 27
60885415 GGGCAAAATG
* * * *
60885425 GTAATTTTACCCCACTAGGGTATCTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
60885451 GATAATTCTACCCTACAGGGGTATTTC-
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
60885478 GATAATTCTACCTTA-TAGAGGTATTTCA
1 G-TAATTCTACCCTACAAG-GGTATTTCA
**
60885506 GTAATTCTACCCTA-AAGGGGTATTTTGG
1 GTAATTCTACCCTACAA-GGGTA-TTTCA
* * *
60885534 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
60885561 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
60885588 GTAATTCTACCCTACAAGGGTA-TTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
60885614 GTAATT
1 GTAATT
60885620 TGTAAATCAA
Statistics
Matches: 144, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
26 12 0.08
27 108 0.75
28 23 0.16
29 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:60887165 original size:40 final size:40
Alignment explanation
Indices: 60887106--60887272 Score: 232
Period size: 40 Copynumber: 4.2 Consensus size: 40
60887096 CAGAATACAA
* * *
60887106 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
60887146 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
60887186 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
60887226 CCGGAT-GTAGCCG-CTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATAG-A-ACGACTTGCACGAA-TGCCTTCGGGTCTTAGC
60887266 CCGGATA
1 CCGGATA
60887273 TAATTTCCAG
Statistics
Matches: 117, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
39 3 0.03
40 112 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:60887296 original size:80 final size:81
Alignment explanation
Indices: 60887122--60887311 Score: 208
Period size: 80 Copynumber: 2.4 Consensus size: 81
60887112 ATAACCACGT
* * *
60887122 GCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACGAATGCCTTCGGGTCTTAAC
**
60887186 CCGGATAGAACGACTT
66 CCGGATAGAACGACCA
* *
60887202 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-CCG-CTAGCAC-AATTGCCTTCGGGTCTTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACGAA-TGCCTTCGGGTCTTA
* ***
60887264 ACCCGGATATAATTTCCA
64 ACCCGGATAGAACGACCA
* * *
60887282 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
60887312 ATCATTCAAT
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 2 0.02
80 87 0.93
81 2 0.02
82 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (81 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACGAATGCCTTCGGGTCTTAAC
CCGGATAGAACGACCA
Found at i:60894526 original size:40 final size:40
Alignment explanation
Indices: 60894418--60894527 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
60894408 ATTAAATGAT
* * * * *
60894418 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
60894458 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
60894498 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
60894528 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:60894542 original size:40 final size:39
Alignment explanation
Indices: 60894418--60894567 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
60894408 ATTAAATGAT
* * * * * * *
60894418 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
60894458 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
60894498 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
60894538 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
60894568 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:60896974 original size:22 final size:23
Alignment explanation
Indices: 60896944--60897022 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 23
60896934 TAGCTCGTAT
60896944 GAGCTTACCGTTCAGTC-CT-TA
1 GAGCTTACCGTTCAGTCTCTATA
* *
60896965 GGGGCTTACCATTTCAG-CTCTATA
1 -GAGCTTACC-GTTCAGTCTCTATA
* *
60896989 GAGCTTACCGTTCAGT-TCAATT
1 GAGCTTACCGTTCAGTCTCTATA
60897011 GAGCTTACCGTT
1 GAGCTTACCGTT
60897023 TATCGACTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
22 30 0.64
23 15 0.32
24 2 0.04
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (23 bp):
GAGCTTACCGTTCAGTCTCTATA
Found at i:60897223 original size:16 final size:16
Alignment explanation
Indices: 60897178--60897231 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
60897168 AAACATAAAG
60897178 TACATGTTACATGAAT
1 TACATGTTACATGAAT
* **
60897194 AATATACCTTACATGAAT
1 --TACATGTTACATGAAT
*
60897212 TACATGTTACATGGAT
1 TACATGTTACATGAAT
60897228 TACA
1 TACA
60897232 AGGTTTATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
16 16 0.55
18 13 0.45
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (16 bp):
TACATGTTACATGAAT
Found at i:60899646 original size:40 final size:40
Alignment explanation
Indices: 60899574--60899753 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 40
60899564 CCTCGATTGT
* *
60899574 CTTCGGGACA-TAGCCCGG-TTATAGTGATTCGCAC-AATTGC
1 CTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACGAA-TGC
* * *
60899614 CTTTGAGAATTAGCCCAGATTTAGTAACTCGCACGAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
* * * *
60899654 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACGAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
* * * *
60899694 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACGAATGC
*
60899735 CTTCGGGACTTAGCCCGGA
1 CTTCGGGAATTAGCCCGGA
60899754 CACCATTCGA
Statistics
Matches: 113, Mismatches: 21, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
39 1 0.01
40 82 0.73
41 29 0.26
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
Found at i:60899695 original size:80 final size:81
Alignment explanation
Indices: 60899574--60899752 Score: 202
Period size: 80 Copynumber: 2.2 Consensus size: 81
60899564 CCTCGATTGT
* * * *
60899574 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTTGAGAATT-AGCCCAGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGAGAATTGA-CCCAGATTTAG
* * *
60899638 TAAC-TCGCACGAATGC
65 TAACTTAGCACAAAAGC
* * * * *
60899654 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACGAA-TGCCTTCGGGAATTGACCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC-AATTGCCTTCGAGAATTGACCCAGATTTAG
*
60899718 TCACTTAGCACAAAAGC
65 TAACTTAGCACAAAAGC
60899735 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
60899753 ACACCATTCG
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
80 53 0.65
81 29 0.35
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGAGAATTGACCCAGATTTAGT
AACTTAGCACAAAAGC
Found at i:60902702 original size:47 final size:45
Alignment explanation
Indices: 60902636--60902760 Score: 184
Period size: 47 Copynumber: 2.8 Consensus size: 45
60902626 CACATAGTAA
60902636 GATGCCAACGCCATATCCCAGATATGGTCTTACATGGGATCACACT
1 GATGCCAACGCCATATCCCAGATATGGTCTTACATGGGATCACA-T
* *
60902682 CGATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACAT
1 -GATGCCAACGCCATATCCCAGATATGGTCTTACATGGGATCACAT
*
60902728 -AT--CAACGTCATATCCCAGATATGGTCTTACATG
1 GATGCCAACGCCATATCCCAGATATGGTCTTACATG
60902761 ATAAAATATA
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
42 28 0.38
44 2 0.03
46 1 0.01
47 42 0.58
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (45 bp):
GATGCCAACGCCATATCCCAGATATGGTCTTACATGGGATCACAT
Found at i:60902812 original size:90 final size:88
Alignment explanation
Indices: 60902641--60902813 Score: 213
Period size: 90 Copynumber: 1.9 Consensus size: 88
60902631 AGTAAGATGC
* * * *
60902641 CAACGCCATATCCCAGATATGGTCTTACATGGGATCACACTCGATGCCAATGCCATGTCCCAGAT
1 CAACGCCATATCCCAGATATGGTCTTACAT-GGATAAAAATCGATGCCAATGCCATATCCCAGAT
*
60902706 ATGGTCTTACATGGGATCACATAT
65 ATGGTCTTACACGGGATCACATAT
* * **
60902730 CAACGTCATATCCCAGATATGGTCTTACAT-GATAAAATATACGGATGCCGATGCCATATCTTAG
1 CAACGCCATATCCCAGATATGGTCTTACATGGATAAAA-AT-C-GATGCCAATGCCATATCCCAG
*
60902794 ATATGGTCTTATACGGGATC
63 ATATGGTCTTACACGGGATC
60902814 TCATCACCCC
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
87 5 0.07
88 1 0.01
89 30 0.42
90 35 0.49
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (88 bp):
CAACGCCATATCCCAGATATGGTCTTACATGGATAAAAATCGATGCCAATGCCATATCCCAGATA
TGGTCTTACACGGGATCACATAT
Found at i:60907878 original size:40 final size:40
Alignment explanation
Indices: 60907808--60908022 Score: 287
Period size: 40 Copynumber: 5.5 Consensus size: 40
60907798 AAGCCAGGTA
* * * *
60907808 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
60907847 CCTTTGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60907887 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
60907927 CCTTCGGG-CTTAACCCGGATATAGTAA-TCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
60907965 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
60908005 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
60908023 ATTATCATCC
Statistics
Matches: 157, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 20 0.13
39 44 0.28
40 93 0.59
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60907977 original size:78 final size:79
Alignment explanation
Indices: 60907808--60908022 Score: 285
Period size: 78 Copynumber: 2.7 Consensus size: 79
60907798 AAGCCAGGTA
* * * * * * *
60907808 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATGCCTTTGGGACATAGCCCGGATGTAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
60907872 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
60907887 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
60907951 TAA-TCGCACAAATG
65 TAACTCGCACAAATG
*
60907965 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCG
60908023 ATTATCATCC
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 55 0.45
79 37 0.31
80 28 0.23
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:60908017 original size:118 final size:119
Alignment explanation
Indices: 60907808--60908022 Score: 317
Period size: 118 Copynumber: 1.8 Consensus size: 119
60907798 AAGCCAGGTA
* * * * * **
60907808 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCGAATGCCTTTGGGACATAGCCCGGATGTAGT
1 CCTTCGGGACTTAACCGGATATAGCTAATCGCACAAATGCCTTCGGGACATAGCCCGGAACTAGT
*
60907873 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
60907927 CCTTCGGG-CTTAACCCGGATATAG-TAATCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAA-CCGGATATAGCTAATCGCACAAATGCCTTCGGGACATAGCCCGGAACTAG
*
60907990 TCACTAGCACAAATGCCTTCGGGACTTAGCCCG
65 TAACTAGCACAAATGCCTTCGGGACTTAGCCCG
60908023 ATTATCATCC
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
118 67 0.79
119 18 0.21
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAACCGGATATAGCTAATCGCACAAATGCCTTCGGGACATAGCCCGGAACTAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60910570 original size:17 final size:18
Alignment explanation
Indices: 60910528--60910576 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
60910518 AGTTGAAAAG
60910528 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
60910547 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
60910564 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
60910577 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:60911458 original size:40 final size:39
Alignment explanation
Indices: 60911392--60911557 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
60911382 AAATTGAATG
* * *
60911392 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
60911431 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
60911470 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
60911510 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
60911550 ATATCCGG
1 ATATCCGG
60911558 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:60918584 original size:17 final size:18
Alignment explanation
Indices: 60918542--60918590 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
60918532 AGTTGAAAAG
60918542 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
60918561 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
60918578 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
60918591 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:60919473 original size:40 final size:39
Alignment explanation
Indices: 60919407--60919572 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
60919397 AAATTGAATG
* * *
60919407 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
60919446 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
60919485 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
60919525 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
60919565 ATATCCGG
1 ATATCCGG
60919573 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:60925210 original size:29 final size:28
Alignment explanation
Indices: 60925176--60925278 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
60925166 TAATCGATCA
*
60925176 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* * **
60925205 CGCACACATAGTGCCGTATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
60925234 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
60925263 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60925279 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:60931593 original size:29 final size:28
Alignment explanation
Indices: 60931559--60931661 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
60931549 TAATCGATCA
*
60931559 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* * **
60931588 CGCACACATAGTGCCGTATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
60931617 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
60931646 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60931662 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:60936728 original size:40 final size:40
Alignment explanation
Indices: 60936647--60936862 Score: 240
Period size: 40 Copynumber: 5.4 Consensus size: 40
60936637 AAGCCAGGTA
* * * * *
60936647 CCTTCGGGATTTA-ACCGGCTATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
60936686 CCTTTGGGACATAGCTCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
60936726 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
60936766 CCTTCGGGGCTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
60936806 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
60936846 TCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
60936863 AGTTATCATC
Statistics
Matches: 150, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 12 0.08
40 138 0.92
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60942653 original size:27 final size:27
Alignment explanation
Indices: 60942616--60942700 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
60942606 TATTTCTCTC
*
60942616 AGAGTTCACCAGACATACTATTCCTTT
1 AGAGTTCACCATACATACTATTCCTTT
* * *
60942643 CGAGTTTACCATACGTACTATTCCTTT
1 AGAGTTCACCATACATACTATTCCTTT
* *
60942670 AGAGTTCACCATACATACTAGTCCTTC
1 AGAGTTCACCATACATACTATTCCTTT
60942697 AGAG
1 AGAG
60942701 CTAGCTACAC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (27 bp):
AGAGTTCACCATACATACTATTCCTTT
Found at i:60942883 original size:27 final size:27
Alignment explanation
Indices: 60942850--60942919 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
60942840 AGATCACCAT
*
60942850 AAAGGCTTCCATTTCATAGATTGCCAC
1 AAAGGCTTCCATTTCATAGACTGCCAC
* *
60942877 AATGGCTTTCATTTCATAGACTGCCAC
1 AAAGGCTTCCATTTCATAGACTGCCAC
60942904 AAAGGCTTCCATTTCA
1 AAAGGCTTCCATTTCA
60942920 CATCTACCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (27 bp):
AAAGGCTTCCATTTCATAGACTGCCAC
Found at i:60946204 original size:186 final size:186
Alignment explanation
Indices: 60945890--60946263 Score: 739
Period size: 186 Copynumber: 2.0 Consensus size: 186
60945880 TAATGAGCAT
*
60945890 GATAGGAGATACCAAGAGACAAATTGGCACCGATTTCCCTAGTAACACTAAAGATAATTCTTGAA
1 GATAGGAGATACCAAGAGACAAATTGGCACCGATTTCCCTAGTAACACTAAAGATAATCCTTGAA
60945955 GAGAAGGAAGGAGTAGGTGAAAGCAATCGTGCTCCGATCGGGTAAAGTGTTGAGTAGCCTGGAGA
66 GAGAAGGAAGGAGTAGGTGAAAGCAATCGTGCTCCGATCGGGTAAAGTGTTGAGTAGCCTGGAGA
60946020 ACCTAACTTAGGAGGTAAACAAGCGAAATACTGATTATCTTCAGGAAGAAACTTTA
131 ACCTAACTTAGGAGGTAAACAAGCGAAATACTGATTATCTTCAGGAAGAAACTTTA
60946076 GATAGGAGATACCAAGAGACAAATTGGCACCGATTTCCCTAGTAACACTAAAGATAATCCTTGAA
1 GATAGGAGATACCAAGAGACAAATTGGCACCGATTTCCCTAGTAACACTAAAGATAATCCTTGAA
60946141 GAGAAGGAAGGAGTAGGTGAAAGCAATCGTGCTCCGATCGGGTAAAGTGTTGAGTAGCCTGGAGA
66 GAGAAGGAAGGAGTAGGTGAAAGCAATCGTGCTCCGATCGGGTAAAGTGTTGAGTAGCCTGGAGA
60946206 ACCTAACTTAGGAGGTAAACAAGCGAAATACTGATTATCTTCAGGAAGAAACTTTA
131 ACCTAACTTAGGAGGTAAACAAGCGAAATACTGATTATCTTCAGGAAGAAACTTTA
60946262 GA
1 GA
60946264 AGTTGATAAT
Statistics
Matches: 187, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
186 187 1.00
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (186 bp):
GATAGGAGATACCAAGAGACAAATTGGCACCGATTTCCCTAGTAACACTAAAGATAATCCTTGAA
GAGAAGGAAGGAGTAGGTGAAAGCAATCGTGCTCCGATCGGGTAAAGTGTTGAGTAGCCTGGAGA
ACCTAACTTAGGAGGTAAACAAGCGAAATACTGATTATCTTCAGGAAGAAACTTTA
Found at i:60959057 original size:55 final size:56
Alignment explanation
Indices: 60958998--60959121 Score: 144
Period size: 55 Copynumber: 2.2 Consensus size: 56
60958988 TCAATCTAAT
* *
60958998 AGGTTCGACCACGGGTGC-TAGACACGGGCGTGTCGCACGCCCGTGTTGTTTTAAC
1 AGGTTCGACCACGGGTGCTTACACACGAGCGTGTCGCACGCCCGTGTTGTTTTAAC
* * * * * * **
60959053 AGGTTCAATCAC-AGTTCTTCCACACGAGCGTGTCGCATGCCCGTGTTGTTTTGGC
1 AGGTTCGACCACGGGTGCTTACACACGAGCGTGTCGCACGCCCGTGTTGTTTTAAC
60959108 AGGTTCGACCACGG
1 AGGTTCGACCACGG
60959122 CCATGTCGCA
Statistics
Matches: 54, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
54 3 0.06
55 51 0.94
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.26
Consensus pattern (56 bp):
AGGTTCGACCACGGGTGCTTACACACGAGCGTGTCGCACGCCCGTGTTGTTTTAAC
Found at i:60964555 original size:8 final size:8
Alignment explanation
Indices: 60964527--60964567 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
60964517 AACTGCAAAG
60964527 GCTGAAAA
1 GCTGAAAA
* *
60964535 GCCGAACA
1 GCTGAAAA
60964543 GCTGAAAA
1 GCTGAAAA
60964551 GCTGAAAA
1 GCTGAAAA
*
60964559 GCTGGAAA
1 GCTGAAAA
60964567 G
1 G
60964568 TGGATGGTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.44, C:0.17, G:0.29, T:0.10
Consensus pattern (8 bp):
GCTGAAAA
Found at i:60969407 original size:37 final size:37
Alignment explanation
Indices: 60969344--60969452 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
60969334 AGCTCAGACG
* *
60969344 AAATCTCCACACGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
* *
60969381 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
*
60969418 TAATCTCCACACGTAGTCATCAGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGA
60969453 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
Found at i:60969722 original size:48 final size:48
Alignment explanation
Indices: 60969598--60969782 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
60969588 GCACATCGCC
*
60969598 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
60969648 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
60969696 TACATATTTCACATTATCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60969744 TACACATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
60969783 TGCATGTTCA
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 1 0.01
50 42 0.34
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:60969787 original size:98 final size:97
Alignment explanation
Indices: 60969598--60969781 Score: 300
Period size: 98 Copynumber: 1.9 Consensus size: 97
60969588 GCACATCGCC
* *
60969598 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACACATTTCACATT
60969663 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
* *
60969696 TACATATTTCACATTATCCATTCGGCTTTACCACATATACATATCTC-ATACACATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACACATTTCACATTG
60969759 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
60969782 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 45 0.56
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACACATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:60969826 original size:47 final size:47
Alignment explanation
Indices: 60969752--60969992 Score: 369
Period size: 47 Copynumber: 5.1 Consensus size: 47
60969742 CATACACATT
* * * * *
60969752 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
60969799 CCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
60969846 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
60969893 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
60969940 TCACATTGGCCATTCGGCCTTATCTCATATAT--ATACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGC--TCACATTCA
60969987 TCACAT
1 TCACAT
60969993 AAAATCCTAA
Statistics
Matches: 181, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
45 2 0.01
47 179 0.99
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:60972848 original size:27 final size:27
Alignment explanation
Indices: 60972789--60972849 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
60972779 CATTCATCTC
*
60972789 ATAGGGGCATAACAATCATTTTTTCAT
1 ATAGGGGCATAACAATCATTTTATCAT
* * *
60972816 ACAGGGGCATAATAGTCATTTTATCAGT
1 ATAGGGGCATAACAATCATTTTATCA-T
60972844 -TAGGGG
1 ATAGGGG
60972850 GTCTAGGTAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (27 bp):
ATAGGGGCATAACAATCATTTTATCAT
Found at i:60978754 original size:2 final size:2
Alignment explanation
Indices: 60978747--60978776 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
60978737 TCTTAAGGTG
60978747 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60978777 GATGATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:60992459 original size:27 final size:27
Alignment explanation
Indices: 60992418--60992474 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
60992408 AGTACTGTGC
* *
60992418 TAGTGGCTTTACCACGTATTCTGATAT
1 TAGTGGCTATACCACGTATACTGATAT
* *
60992445 TAGTGGCTATGCCACGTATACTGTTAT
1 TAGTGGCTATACCACGTATACTGATAT
60992472 TAG
1 TAG
60992475 CAGCTTCGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.39
Consensus pattern (27 bp):
TAGTGGCTATACCACGTATACTGATAT
Found at i:60992665 original size:33 final size:33
Alignment explanation
Indices: 60992584--60992688 Score: 94
Period size: 33 Copynumber: 3.3 Consensus size: 33
60992574 GCATACCTAC
* * *
60992584 ACTGTACTGATACTGAATTGGGCTTAGGCCC--
1 ACTGTACTGTTACTGAATAGGGCTAAGGCCCAG
* *
60992615 AC---ACTGTCACTGTATAGGGCTAAGGCCCAG
1 ACTGTACTGTTACTGAATAGGGCTAAGGCCCAG
* *
60992645 ACTGTACTGTTACTGAATAGGGCCATGGCCCAG
1 ACTGTACTGTTACTGAATAGGGCTAAGGCCCAG
*
60992678 ACCGTTACTGT
1 ACTG-TACTGT
60992689 ATGCATTGTG
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
28 21 0.36
30 2 0.03
31 2 0.03
33 27 0.47
34 6 0.10
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.26
Consensus pattern (33 bp):
ACTGTACTGTTACTGAATAGGGCTAAGGCCCAG
Found at i:60993348 original size:31 final size:30
Alignment explanation
Indices: 60993291--60993349 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
60993281 GTAAATACTC
* * * *
60993291 AAAATTTGAGGGATTAAAGTGTAAATATGA
1 AAAAGTTGAAGGAATAAAGTGCAAATATGA
60993321 AAAAGTTGAAGGAATAATAGTGCAAATAT
1 AAAAGTTGAAGGAATAA-AGTGCAAATAT
60993350 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.49, C:0.02, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAAGTTGAAGGAATAAAGTGCAAATATGA
Found at i:60996112 original size:33 final size:33
Alignment explanation
Indices: 60996067--60996208 Score: 112
Period size: 33 Copynumber: 4.3 Consensus size: 33
60996057 AATTGACGGA
* * *
60996067 TAAGACCGTAGCTGGGCCATGGCAATATATGTG
1 TAAGACCATAGCTAGGCCATGGCAATACATGTG
* *
60996100 TAAGACCATAGCTAGGCTATGGC-AT-CCTGATG
1 TAAGACCATAGCTAGGCCATGGCAATACATG-TG
* * ** **
60996132 -ATAGACCATATCTGGGATATGGCACCACGA-GTG
1 TA-AGACCATAGCTAGGCCATGGCAATAC-ATGTG
* *
60996165 TAAGACCATGGCTAGGCCATGGCAATACACGTG
1 TAAGACCATAGCTAGGCCATGGCAATACATGTG
60996198 TAAGACCATAG
1 TAAGACCATAG
60996209 TTGGACTATG
Statistics
Matches: 83, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
31 3 0.04
32 23 0.28
33 54 0.65
34 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (33 bp):
TAAGACCATAGCTAGGCCATGGCAATACATGTG
Found at i:60996296 original size:43 final size:44
Alignment explanation
Indices: 60996236--60996319 Score: 134
Period size: 43 Copynumber: 1.9 Consensus size: 44
60996226 ACCAGAAATG
*
60996236 AGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCAGAC
1 AGTAAGACCATAGCTGAAAGACACTATGGCATCACGATTCAGAC
* *
60996280 AGTAAG-CCATAGCTGAAAGACACTATGGTATCGCGATTCA
1 AGTAAGACCATAGCTGAAAGACACTATGGCATCACGATTCA
60996320 AATGTATAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 31 0.84
44 6 0.16
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (44 bp):
AGTAAGACCATAGCTGAAAGACACTATGGCATCACGATTCAGAC
Found at i:60996525 original size:47 final size:46
Alignment explanation
Indices: 60996326--60996576 Score: 315
Period size: 46 Copynumber: 5.4 Consensus size: 46
60996316 TTCAAATGTA
* * * *
60996326 TAAGACAATGGTTGAAAGATACCATGACAACATTATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAG
* *
60996372 TAAGACCATGGTTGAAAAATACCATGGCAACATGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAG
* * *
60996418 TAAGACCATGGTTGAAAGATACCATGACAACGTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAG
*** *
60996464 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGA-TATGAAATGAG
* * *
60996511 CAAGACCATGGTTGAAAGATACCATAGGCAACCTGACA-GAAAATGAG
1 TAAGACCATGGTTGAAAGATACCAT-GGCAACATGATATG-AAATGAG
*
60996558 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
60996577 CACTATAGCA
Statistics
Matches: 181, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
46 117 0.65
47 55 0.30
48 9 0.05
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAG
Found at i:60997057 original size:24 final size:23
Alignment explanation
Indices: 60997026--60997072 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
60997016 ATTACATGAT
*
60997026 TATTCTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGTGTTTGGGTTGGA
60997049 TATTACTGGTGTGTTTGGGTTGGA
1 TATT-CTGGTGTGTTTGGGTTGGA
60997073 ATCCTTGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.11, C:0.04, G:0.36, T:0.49
Consensus pattern (23 bp):
TATTCTGGTGTGTTTGGGTTGGA
Found at i:60997166 original size:2 final size:2
Alignment explanation
Indices: 60997159--60997183 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60997149 ATCGTACTTA
60997159 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
60997184 AGAAAGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:61004292 original size:21 final size:20
Alignment explanation
Indices: 61004272--61004308 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
61004262 TTTTATTGTC
*
61004272 TCTCAAATCAT-ATAAAATG
1 TCTCTAATCATCATAAAATG
61004291 TCTCTAATCATCATAAAA
1 TCTCTAATCATCATAAAA
61004309 ACAAGTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.32
Consensus pattern (20 bp):
TCTCTAATCATCATAAAATG
Found at i:61008113 original size:25 final size:25
Alignment explanation
Indices: 61008084--61008131 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61008074 TTATAATATG
* * *
61008084 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
61008109 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
61008132 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:61008182 original size:9 final size:9
Alignment explanation
Indices: 61008170--61008226 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
61008160 TTTGATAAAC
61008170 ATGATATGT
1 ATGATATGT
*
61008179 ATGATATGCAC
1 ATGATATG--T
*
61008190 ATGACATGT
1 ATGATATGT
*
61008199 ATGATATGCAC
1 ATGATATG--T
61008210 ATGATATGT
1 ATGATATGT
61008219 ATGATATG
1 ATGATATG
61008227 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:61008193 original size:20 final size:20
Alignment explanation
Indices: 61008168--61008238 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
61008158 ATTTTGATAA
61008168 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
61008188 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
61008208 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
61008228 ACATGAGATGT
1 ACATGATATGT
61008239 TTATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:61008215 original size:11 final size:11
Alignment explanation
Indices: 61008179--61008233 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
61008169 CATGATATGT
61008179 ATGATATGCAC
1 ATGATATGCAC
* *
61008190 ATGACATG--T
1 ATGATATGCAC
61008199 ATGATATGCAC
1 ATGATATGCAC
*
61008210 ATGATATG--T
1 ATGATATGCAC
61008219 ATGATATGCAC
1 ATGATATGCAC
61008230 ATGA
1 ATGA
61008234 GATGTTTATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:61008340 original size:24 final size:24
Alignment explanation
Indices: 61008283--61008435 Score: 220
Period size: 24 Copynumber: 6.4 Consensus size: 24
61008273 GGAGGAAGTG
61008283 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
61008307 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
61008330 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
61008354 CAAAAGGGCTTATACCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
61008378 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
61008401 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
61008425 TAAAAGAGGCT
1 CAAAAG-GGCT
61008436 AGGCCTCCAG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
23 42 0.36
24 71 0.61
25 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:61008352 original size:47 final size:47
Alignment explanation
Indices: 61008283--61008435 Score: 218
Period size: 47 Copynumber: 3.2 Consensus size: 47
61008273 GGAGGAAGTG
61008283 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
61008330 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
* *
61008378 -TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
*
61008425 TAAAAGAGGCT
1 CAAAAG-GGCT
61008436 AGGCCTCCAG
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
47 65 0.70
48 24 0.26
49 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:61008399 original size:71 final size:71
Alignment explanation
Indices: 61008283--61008435 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 71
61008273 GGAGGAAGTG
*
61008283 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
61008348 AGTTAT
66 AGTTAT
* * *
61008354 CAAAAGGGCTTATACCTCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCC
1 CAAAAGGGCTTATACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
61008419 AGTTAT
66 AGTTAT
*
61008425 TAAAAGAGGCT
1 CAAAAG-GGCT
61008436 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 72 0.95
72 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:61008677 original size:31 final size:31
Alignment explanation
Indices: 61008642--61008705 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
61008632 CATTTACAGT
61008642 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
61008673 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
61008704 AA
1 AA
61008706 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:61010696 original size:29 final size:28
Alignment explanation
Indices: 61010618--61010732 Score: 94
Period size: 28 Copynumber: 4.1 Consensus size: 28
61010608 AGCATGGCTG
* * *
61010618 CCAGCACAGAT-A-ATGTGACAGAGTCA
1 CCAGAACAGATAATATGTGGCAGAGCCA
* *
61010644 CCAGATACATATAATCA--TGACAGAGCCA
1 CCAGA-ACAGATAAT-ATGTGGCAGAGCCA
61010672 CCAGAACAGATATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATATGTGGCAGAGCCA
* * * *
61010701 TCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAATATGTGGCAGAGCCA
61010729 CCAG
1 CCAG
61010733 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
26 4 0.06
27 12 0.17
28 35 0.49
29 20 0.28
30 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (28 bp):
CCAGAACAGATAATATGTGGCAGAGCCA
Found at i:61010728 original size:28 final size:29
Alignment explanation
Indices: 61010664--61010732 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
61010654 ATAATCATGA
61010664 CAGAGCCACCAGAACAGATATATATGTGG
1 CAGAGCCACCAGAACAGATATATATGTGG
* * *
61010693 CAGAGCCATCAGATCAGATA-ATTTGTGG
1 CAGAGCCACCAGAACAGATATATATGTGG
*
61010721 CATAGCCACCAG
1 CAGAGCCACCAG
61010733 GACGCTTCCT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 17 0.49
29 18 0.51
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (29 bp):
CAGAGCCACCAGAACAGATATATATGTGG
Found at i:61011162 original size:8 final size:8
Alignment explanation
Indices: 61011146--61011177 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
61011136 CACAAAATAC
61011146 CGGCTTTT
1 CGGCTTTT
*
61011154 CGGCATTT
1 CGGCTTTT
61011162 CGGCTTTT
1 CGGCTTTT
61011170 CGGCTTTT
1 CGGCTTTT
61011178 GCCAATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:61012174 original size:24 final size:24
Alignment explanation
Indices: 61012147--61012217 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
61012137 CTAGATTTCC
** *
61012147 TCCCTTATCTGCTCCTAAATCTTA
1 TCCCTTATCAACTCCTAAATCCTA
61012171 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
61012195 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
61012218 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:61018554 original size:28 final size:26
Alignment explanation
Indices: 61018504--61018618 Score: 122
Period size: 28 Copynumber: 4.2 Consensus size: 26
61018494 AGCATGGCTG
* *
61018504 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
61018530 CCAGATACATATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
61018558 CCAGAACAGATATATATGTGGCAGAGCCA
1 CCAGAACAG--ATA-ATGTGGCAGAGCCA
* *
61018587 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
61018615 CCAG
1 CCAG
61018619 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
26 6 0.08
27 14 0.18
28 31 0.41
29 23 0.30
30 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:61018589 original size:57 final size:54
Alignment explanation
Indices: 61018504--61018618 Score: 142
Period size: 57 Copynumber: 2.1 Consensus size: 54
61018494 AGCATGGCTG
* *
61018504 CCAGAACAGATAATGTGACAGAGTCACCAGATACATATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * *
61018558 CCAGAACAGATATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAG--ATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
61018615 CCAG
1 CCAG
61018619 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 9 0.17
56 9 0.17
57 34 0.65
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:61020070 original size:24 final size:24
Alignment explanation
Indices: 61020043--61020113 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
61020033 CTAGATTTCC
**
61020043 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
61020067 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
61020091 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
61020114 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:61023875 original size:22 final size:22
Alignment explanation
Indices: 61023836--61023894 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
61023826 CGGCACATTG
* *
61023836 GAGCTTACCGTTTCAGCTTG-TA
1 GAGCTTACTG-TTCAGCTCGATA
*
61023858 TGAGCTTATTGTTCAGCTCGATA
1 -GAGCTTACTGTTCAGCTCGATA
61023881 GAGCTTACTGTTCA
1 GAGCTTACTGTTCA
61023895 TCAGCGCAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 21 0.68
23 10 0.32
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCGATA
Found at i:61025348 original size:46 final size:46
Alignment explanation
Indices: 61025298--61025473 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61025288 TGGTTGAGCA
61025298 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61025344 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61025389 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61025437 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61025474 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61025454 original size:93 final size:93
Alignment explanation
Indices: 61025295--61025466 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61025285 GGATGGTTGA
* *
61025295 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61025360 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61025388 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61025453 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61025467 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61029640 original size:23 final size:23
Alignment explanation
Indices: 61029614--61029659 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
61029604 TGAAGAATTG
61029614 AAAAGTTATTAACTGAAGCACCA
1 AAAAGTTATTAACTGAAGCACCA
61029637 AAAAGTTATTAACTGAAGCACCA
1 AAAAGTTATTAACTGAAGCACCA
61029660 GTGTGGTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.22
Consensus pattern (23 bp):
AAAAGTTATTAACTGAAGCACCA
Found at i:61032864 original size:47 final size:46
Alignment explanation
Indices: 61032813--61032980 Score: 182
Period size: 47 Copynumber: 3.6 Consensus size: 46
61032803 TGGTTGAGCA
*
61032813 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
61032859 TTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
61032905 CATCCAAACTCGTTGAGTTGAGTCCGA-TTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
61032952 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
61032981 GCTATGGGTT
Statistics
Matches: 100, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
44 5 0.05
45 22 0.22
46 10 0.10
47 57 0.57
49 6 0.06
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:61038114 original size:40 final size:40
Alignment explanation
Indices: 61038066--61038276 Score: 203
Period size: 40 Copynumber: 5.3 Consensus size: 40
61038056 TGTCCGGGCT
* * * * *
61038066 AAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCC-GGTC
1 AAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTC
* * *
61038106 AATTCCCGAAGGCATTTGTGCTAGTTACCAAAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
*
61038146 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
* * *
61038186 AAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG-C
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
* * * * * * *
61038225 TAATTCCCGAAGGCAATTGTGTGAATCACTATAACCGGG-C
1 -AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
61038265 AATGTCCCGAAG
1 AA-GTCCCGAAG
61038277 ACAATCGAGC
Statistics
Matches: 146, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
39 12 0.08
40 134 0.92
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
Found at i:61038193 original size:80 final size:80
Alignment explanation
Indices: 61038059--61038245 Score: 232
Period size: 80 Copynumber: 2.3 Consensus size: 80
61038049 CGAATGGTGT
* * * * *
61038059 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGTCAATTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGTCAAGTCCCGAAGGCATTCG
*
61038124 TGCTAGTTACCAAAA
66 TGCGAGTTACCAAAA
* * * *
61038139 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACC-GGTCAAGTCCCGAAGGCATTC
* *
61038203 GTGCGAGTTACTAAAT
65 GTGCGAGTTACCAAAA
* *
61038219 CCGGGCTAATTCCCGAAGGCAATTGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTG
61038246 TGAATCACTA
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
79 10 0.11
80 81 0.89
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGTCAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAAA
Found at i:61038261 original size:80 final size:79
Alignment explanation
Indices: 61038058--61038290 Score: 229
Period size: 80 Copynumber: 2.9 Consensus size: 79
61038048 TCGAATGGTG
* * *
61038058 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCT-AAGTGACTAAATCC-GGTCAATTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAA-TCACTAAA-CCGGGTCAAGTCCCGAAGGCAT
* *
61038121 TTGTGCTAGTTACCAAA
63 TCGTGCGAGTTACCAAA
* * * * * * *
61038138 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATCA-CTAAACCGGGTCAAGTCCCGAAGGCATTC
*
61038203 GTGCGAGTTACTAAA
65 GTGCGAGTTACCAAA
* * * *
61038218 TCCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAACCGGG-CAATGTCCCGAAGACAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATCACTA-AACCGGGTCAA-GTCCCGAAGGCATT
*
61038282 CGAGCGAGT
64 CGTGCGAGT
61038291 CGCTATATCC
Statistics
Matches: 124, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
79 8 0.06
80 116 0.94
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATCACTAAACCGGGTCAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAA
Found at i:61038272 original size:120 final size:120
Alignment explanation
Indices: 61038059--61038276 Score: 280
Period size: 120 Copynumber: 1.8 Consensus size: 120
61038049 CGAATGGTGT
* * * *
61038059 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGTCAATTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCAATTCCCGAAGGCAATTG
* * *
61038124 TGCTAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 TGCTAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
61038179 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGC-AATTCCCGAAGGCAATT
* *
61038243 GTG-TGAATCACTATAACCGGG-CAATGTCCCGAAG
65 GTGCT-AATCACCAAAACCGGGTCAA-GTCCCGAAG
61038277 ACAATCGAGC
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
119 18 0.22
120 65 0.78
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCAATTCCCGAAGGCAATTG
TGCTAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:61041441 original size:66 final size:68
Alignment explanation
Indices: 61041365--61041551 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
61041355 TAGTACCACT
*
61041365 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
61041427 CACG
65 CACG
61041431 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
61041496 ATCACG
63 ATCACG
61041502 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
61041552 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:61041476 original size:71 final size:71
Alignment explanation
Indices: 61041388--61041551 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61041378 CGATTTGTCT
61041388 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61041453 CTTTCA
66 CTTTCA
61041459 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61041524 CTTTCA
66 CTTTCA
61041530 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61041552 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61041589 original size:71 final size:70
Alignment explanation
Indices: 61041388--61041585 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
61041378 CGATTTGTCT
* * *
61041388 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61041453 CTTTCA
65 CTTTCA
* * *
61041459 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61041524 CTTTCA
65 CTTTCA
* *
61041530 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
61041586 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61049011 original size:66 final size:68
Alignment explanation
Indices: 61048935--61049121 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
61048925 TAGTACCACT
*
61048935 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
61048997 CACG
65 CACG
61049001 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
61049066 ATCACG
63 ATCACG
61049072 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
61049122 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:61049046 original size:71 final size:71
Alignment explanation
Indices: 61048958--61049121 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61048948 CGATTTGTCT
61048958 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61049023 CTTTCA
66 CTTTCA
61049029 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61049094 CTTTCA
66 CTTTCA
61049100 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61049122 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61049159 original size:71 final size:70
Alignment explanation
Indices: 61048958--61049155 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
61048948 CGATTTGTCT
* * *
61048958 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61049023 CTTTCA
65 CTTTCA
* * *
61049029 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61049094 CTTTCA
65 CTTTCA
* *
61049100 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
61049156 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61053290 original size:42 final size:42
Alignment explanation
Indices: 61053136--61053290 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 42
61053126 TACTACACCA
* * * *
61053136 ATGCCATATCCCATATATGGTCTTACATGGGATCTCAT-ATCG
1 ATGCCATACCCCAGATATGGTCTTACACGAGATCTCATAAT-G
* * * * * *
61053178 ATGCTCATACCCTA-ACTATGGTCTTACAAGAAATCTCACATTA
1 ATGC-CATACCCCAGA-TATGGTCTTACACGAGATCTCATAATG
*
61053221 ATGCCATACCCCAGATATTGTCTTACACGAGATCTCATAATG
1 ATGCCATACCCCAGATATGGTCTTACACGAGATCTCATAATG
* *
61053263 ATGCCATATCCTAGATATGGTCTTACAC
1 ATGCCATACCCCAGATATGGTCTTACAC
61053291 ATAGCCTCGG
Statistics
Matches: 91, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 59 0.65
43 31 0.34
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATACCCCAGATATGGTCTTACACGAGATCTCATAATG
Found at i:61061401 original size:39 final size:39
Alignment explanation
Indices: 61061358--61061484 Score: 173
Period size: 39 Copynumber: 3.3 Consensus size: 39
61061348 AATCATATTC
* * * *
61061358 ACATTTAAGCGTATATCACATTACACATATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
*
61061397 ACATTCAAGCATATATTACAATACTCATATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
* * * *
61061436 ACACTCAAGCATATATCATAGTACTCATCTAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
61061475 ACATTCAAGC
1 ACATTCAAGC
61061485 TGTAATACCC
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.29
Consensus pattern (39 bp):
ACATTCAAGCATATATCACAATACTCATATAATCACATA
Found at i:61068162 original size:46 final size:45
Alignment explanation
Indices: 61068034--61068180 Score: 138
Period size: 47 Copynumber: 3.2 Consensus size: 45
61068024 ACCGATGTCG
* * *
61068034 TGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAGTCGAAGCCA
1 TGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAG-CCAAG-CA
* *
61068081 TG-CTCCAGACATGGTCTTACATTGAC-TATCATCTCGTAGCCAACGCA
1 TGTC-CCAGACATGGTCTTACACTGGCTTA-CATCTCG-AGCCAA-GCA
* *
61068128 TGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCAATGGA
1 TGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GCCAA-GCA
61068174 TGTCCCA
1 TGTCCCA
61068181 AACACATCTT
Statistics
Matches: 83, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
45 1 0.01
46 34 0.41
47 44 0.53
48 4 0.05
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
TGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGCCAAGCA
Found at i:61072115 original size:40 final size:40
Alignment explanation
Indices: 61072018--61072197 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 40
61072008 TCGAATGATG
* *
61072018 TCCGGGCTAAGTCCCGAAGG-ATTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCA-TTTGTGC-GAGTTACTAAA
* * *
61072059 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
61072099 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
61072139 TCCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
61072180 -CCGGGC-AATGTCCCGAAG
1 TCCGGGCTAA-GTCCCGAAG
61072198 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 18, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 88 0.75
41 27 0.23
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61074820 original size:53 final size:53
Alignment explanation
Indices: 61074641--61074844 Score: 140
Period size: 53 Copynumber: 3.8 Consensus size: 53
61074631 AGGGTTTAAG
* * ** * * * *
61074641 GATACCAAGTAAGACCTTGCCAATG-CATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCACGTAAGACCATGCCAA-GACATGAAAATGGTAAG-TTCATAAGGCAAA
* * * * * * * * *
61074695 GAAATCATGTAAGACCATGTCAAGACATGACATTGATAAACTACTATAAGGCAAA
1 GATACCACGTAAGACCATGCCAAGACATGAAAATGGT-AAGTTC-ATAAGGCAAA
* * * * * *
61074750 GATCCCATGTAAGACCATGCCAGGGCATGAAAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGACATGAAAATGGTAAGTTCATAAGGCAAA
* *
61074803 GATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGACATGAAAATGGTAAGTT
61074845 TAAAAAGGAA
Statistics
Matches: 115, Mismatches: 32, Indels: 7
0.75 0.21 0.05
Matches are distributed among these distances:
53 45 0.39
54 32 0.28
55 38 0.33
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.22
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGACATGAAAATGGTAAGTTCATAAGGCAAA
Found at i:61075521 original size:21 final size:21
Alignment explanation
Indices: 61075495--61075535 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
61075485 GACTAGCTTA
61075495 GAGTGACTTCGTGATCCCCTG
1 GAGTGACTTCGTGATCCCCTG
*
61075516 GAGTGACTTTGTGATCCCCT
1 GAGTGACTTCGTGATCCCCT
61075536 ATTCCAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.27, G:0.27, T:0.32
Consensus pattern (21 bp):
GAGTGACTTCGTGATCCCCTG
Found at i:61088709 original size:21 final size:20
Alignment explanation
Indices: 61088685--61088724 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
61088675 CCGTGTTGAT
61088685 TTCAGACTTTGGCCCATTTCC
1 TTCAG-CTTTGGCCCATTTCC
* *
61088706 TTCAGTTTTGGCCCGTTTC
1 TTCAGCTTTGGCCCATTTC
61088725 TCGTTCCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.10, C:0.30, G:0.17, T:0.42
Consensus pattern (20 bp):
TTCAGCTTTGGCCCATTTCC
Found at i:61095024 original size:54 final size:53
Alignment explanation
Indices: 61094938--61095102 Score: 170
Period size: 53 Copynumber: 3.1 Consensus size: 53
61094928 ATTAGGGTTT
* * * * * *
61094938 AAGGAAACCAAGTAAGACCAAGCCAAGGCATGGAATTGGTAAGTTTTACAAGGA
1 AAGGAAACCACGTAAGACCATGTCAAGACATGGAA-TGGTAAGTTTAAAAAGGA
* * * * * * *
61094992 AATGAAATCATGTAAGACCATGTCAAGACATGGCAATGGTGAG-TTCATAAGGT
1 AAGGAAACCACGTAAGACCATGTCAAGACATGG-AATGGTAAGTTTAAAAAGGA
*
61095045 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTTTAAAAAGGA
1 AAGGAAACCACGTAAGACCATGTCAAGACATGG-AATGGTAAGTTTAAAAAGGA
61095099 AAGG
1 AAGG
61095103 TACCTGTGTA
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
53 44 0.49
54 44 0.49
55 2 0.02
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.19
Consensus pattern (53 bp):
AAGGAAACCACGTAAGACCATGTCAAGACATGGAATGGTAAGTTTAAAAAGGA
Found at i:61099886 original size:43 final size:43
Alignment explanation
Indices: 61099739--61099886 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 43
61099729 TGAGACATCG
* *
61099739 TGTAAGACCGTGTCTGGGACATAGGCCTC-A-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACATAGGCATCGATATTGA-A-TTACA
* * * * *
61099782 TATCAGACCATGTCTGAGACATTA-GCATCG-TATCTG-ATTTCG
1 TGTAAGACCATGTCTGGGACA-TAGGCATCGATAT-TGAATTACA
* * *
61099824 TGTAAAACCTTGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACATAGGCATCGATATTGAATTACA
*
61099867 TGTAAGACCATGTCCGGGAC
1 TGTAAGACCATGTCTGGGAC
61099887 GTCGACATTG
Statistics
Matches: 80, Mismatches: 18, Indels: 14
0.71 0.16 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.34
43 46 0.57
44 4 0.05
45 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATAGGCATCGATATTGAATTACA
Found at i:61108937 original size:22 final size:22
Alignment explanation
Indices: 61108911--61108952 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
61108901 GACTTATGTG
61108911 AAAATTTTTGAAAATATGAATA
1 AAAATTTTTGAAAATATGAATA
61108933 AAAATTTTTGAAAATATGAA
1 AAAATTTTTGAAAATATGAA
61108953 AATTTATGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.36
Consensus pattern (22 bp):
AAAATTTTTGAAAATATGAATA
Found at i:61113374 original size:41 final size:40
Alignment explanation
Indices: 61113276--61113465 Score: 150
Period size: 40 Copynumber: 4.6 Consensus size: 40
61113266 TTTTATCAAA
* * *
61113276 TCACCGGCATTTAGCCTACTAGGTTTTAAACCTGAATTCA-
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCTGAA-TCAT
*** * *
61113316 TCACCGGCACGAAGCCTGCTAGACTTTAAGTCTGAACTCAT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCTGAA-TCAT
* * *
61113357 TCACCGGCATTTCGCCTGC-AGGCTTGAAGCCCGATATCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCTGA-ATCA-T
*** *
61113398 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATATTAT
1 TCACCGGCATT-TAGCCTGCTAGGCTTTAAGCCTGA-ATCAT
*
61113440 CTCACCGGCATTATAGCCTACTAGGC
1 -TCACCGGCATT-TAGCCTGCTAGGC
61113466 CCGAAGCCTG
Statistics
Matches: 121, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
40 45 0.37
41 28 0.23
42 8 0.07
43 40 0.33
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (40 bp):
TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCTGAATCAT
Found at i:61113445 original size:43 final size:43
Alignment explanation
Indices: 61113353--61113478 Score: 168
Period size: 43 Copynumber: 3.0 Consensus size: 43
61113343 AAGTCTGAAC
* ** *
61113353 TCAT-TCACCGGCATT-TCGCCTGC-AGGCTTGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATA
*
61113393 TCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATA
* *
61113436 TTATCTCACCGGCATTATAGCCTACTAGGCCCGAAGCCTGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATA
61113479 ATATTATTCA
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
40 4 0.05
41 11 0.14
42 7 0.09
43 54 0.71
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (43 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATA
Found at i:61114369 original size:2 final size:2
Alignment explanation
Indices: 61114362--61114392 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
61114352 CCCCATAGAT
61114362 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
61114393 GCATGACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:61116547 original size:40 final size:40
Alignment explanation
Indices: 61116429--61116567 Score: 181
Period size: 40 Copynumber: 3.5 Consensus size: 40
61116419 GGCTTGAATA
* * *
61116429 CCTTTGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
61116469 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
61116509 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
* *
61116549 CCTTTGGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
61116568 TTATCATCCA
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 88 0.99
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:61118515 original size:14 final size:15
Alignment explanation
Indices: 61118486--61118515 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
61118476 CAAAATTTAG
61118486 ACATGATACTTTCAC
1 ACATGATACTTTCAC
61118501 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
61118515 A
1 A
61118516 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:61121535 original size:38 final size:39
Alignment explanation
Indices: 61121483--61121625 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
61121473 GAATGTTCGA
61121483 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
61121522 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
61121560 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
61121599 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
61121626 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:61121571 original size:77 final size:79
Alignment explanation
Indices: 61121484--61121665 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
61121474 AATGTTCGAG
61121484 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
61121547 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
61121561 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
61121626 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
61121640 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
61121666 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:61129557 original size:38 final size:39
Alignment explanation
Indices: 61129505--61129647 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
61129495 GAATGTTCGA
61129505 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
61129544 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
61129582 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
61129621 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
61129648 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:61129593 original size:77 final size:79
Alignment explanation
Indices: 61129506--61129687 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
61129496 AATGTTCGAG
61129506 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
61129569 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
61129583 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
61129648 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
61129662 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
61129688 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:61133312 original size:41 final size:41
Alignment explanation
Indices: 61133267--61133384 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
61133257 TGAAAGATAA
61133267 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
61133308 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61133338 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61133379 ATGTAG
1 ATGTAG
61133385 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:61133323 original size:71 final size:71
Alignment explanation
Indices: 61133235--61133398 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61133225 GAGATGTATC
61133235 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61133300 AGGACA
66 AGGACA
61133306 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61133371 AGGACA
66 AGGACA
61133377 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
61133399 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:61140350 original size:15 final size:15
Alignment explanation
Indices: 61140330--61140363 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
61140320 GCCTAGGGGC
61140330 AAAATTGTAATTTTG
1 AAAATTGTAATTTTG
61140345 AAAATTGTAATTTTG
1 AAAATTGTAATTTTG
61140360 AAAA
1 AAAA
61140364 GTTAGGGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (15 bp):
AAAATTGTAATTTTG
Found at i:61140893 original size:41 final size:41
Alignment explanation
Indices: 61140848--61140965 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
61140838 TGAAAGATAA
61140848 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
61140889 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61140919 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61140960 ATGTAG
1 ATGTAG
61140966 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:61140904 original size:71 final size:71
Alignment explanation
Indices: 61140816--61140979 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61140806 GAGATGTATC
61140816 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61140881 AGGACA
66 AGGACA
61140887 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61140952 AGGACA
66 AGGACA
61140958 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
61140980 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:61144092 original size:27 final size:27
Alignment explanation
Indices: 61144054--61144108 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
61144044 ATGGTTCCTA
61144054 CCAACGCTTTGTGTTGGGGTAATATTC
1 CCAACGCTTTGTGTTGGGGTAATATTC
61144081 CCAACGCTTTGTGTTGGGGTAATATTC
1 CCAACGCTTTGTGTTGGGGTAATATTC
61144108 C
1 C
61144109 TTCTTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.36
Consensus pattern (27 bp):
CCAACGCTTTGTGTTGGGGTAATATTC
Found at i:61144927 original size:22 final size:23
Alignment explanation
Indices: 61144881--61144927 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
61144871 ATTTGATAAT
*
61144881 ATATTTTCATATAACAAATTAAA
1 ATATTTTCAAATAACAAATTAAA
* *
61144904 ATATTTTTAAATAA-AAGTTAAA
1 ATATTTTCAAATAACAAATTAAA
61144926 AT
1 AT
61144928 TGAACAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
ATATTTTCAAATAACAAATTAAA
Found at i:61147588 original size:26 final size:26
Alignment explanation
Indices: 61147559--61147666 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
61147549 TGGTACAAAT
61147559 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
61147585 TGATAATGGATTAGGTAAATATTCGA
1 TGATAATGGGTTAGGTAAATGTTCCA
61147611 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
61147637 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
61147663 TGAT
1 TGAT
61147667 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:61154627 original size:26 final size:26
Alignment explanation
Indices: 61154598--61154705 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
61154588 TGGTACAAAT
61154598 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
61154624 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
61154650 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
61154676 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
61154702 TGAT
1 TGAT
61154706 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:61156194 original size:18 final size:18
Alignment explanation
Indices: 61156154--61156194 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
61156144 TAAATTACTG
*
61156154 AAATACTTTAAAAGTGGA
1 AAATTCTTTAAAAGTGGA
61156172 AAATTCTTTAAAAGTGGA
1 AAATTCTTTAAAAGTGGA
61156190 AAATT
1 AAATT
61156195 TACAGTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.32
Consensus pattern (18 bp):
AAATTCTTTAAAAGTGGA
Found at i:61159540 original size:29 final size:29
Alignment explanation
Indices: 61159508--61159637 Score: 156
Period size: 29 Copynumber: 4.5 Consensus size: 29
61159498 ATAGTGAATC
*
61159508 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
61159537 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
* *
61159566 CGCACACTTAGTGCTATAGA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * * *
61159594 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
61159624 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61159638 CAATCTTGTC
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
27 2 0.02
28 20 0.22
29 49 0.55
30 17 0.19
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:61162161 original size:15 final size:17
Alignment explanation
Indices: 61162131--61162162 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
61162121 TTGATACTTG
61162131 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
61162148 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
61162163 AACTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Done.