Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 201 of 410
Found at i:61486875 original size:141 final size:141
Alignment explanation
Indices: 61486616--61486899 Score: 408
Period size: 141 Copynumber: 2.0 Consensus size: 141
61486606 GAACGGCGTG
* * * *
61486616 GGCTACGTTTTGATGTAGGAAGGCAAAGTCATAGCTTATACATCGAGACAGTTAAAGCCGTACGA
1 GGCTACGTTTTGATGCAGGAAGGCAAAGTCATAGCTTATACATCGAGACAATAAAAGCCGTACAA
* * * *
61486681 AAAGAACTATCCAACACACGATCTGGAATTGGCGGCAATTGTGTTTGCTTTGAAGATTTGGAACC
66 AAAGAACTATCCAACAAAAGATCTAGAACTGGCGGCAATTGTGTTTGCTTTGAAGATTTGGAACC
61486746 ACTATCTGTTT
131 ACTATCTGTTT
* * * **
61486757 GGCTGCGTTTTGATGCAGGAAGGCAAAGTCATAGCTTATGCCTCGAGACAATAAAATTCGTACAA
1 GGCTACGTTTTGATGCAGGAAGGCAAAGTCATAGCTTATACATCGAGACAATAAAAGCCGTACAA
* **
61486822 AAAGAACTATCCAGCAAAAGATCTAGAACTGGCGGCTAA-TGTGTTTGCTTTGAAGATTTGGCGC
66 AAAGAACTATCCAACAAAAGATCTAGAACTGGCGGC-AATTGTGTTTGCTTTGAAGATTTGGAAC
61486886 CACTATCTGTTT
130 CACTATCTGTTT
61486898 GG
1 GG
61486900 TGAGAATTCT
Statistics
Matches: 126, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
141 124 0.98
142 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (141 bp):
GGCTACGTTTTGATGCAGGAAGGCAAAGTCATAGCTTATACATCGAGACAATAAAAGCCGTACAA
AAAGAACTATCCAACAAAAGATCTAGAACTGGCGGCAATTGTGTTTGCTTTGAAGATTTGGAACC
ACTATCTGTTT
Found at i:61489405 original size:26 final size:25
Alignment explanation
Indices: 61489343--61489421 Score: 81
Period size: 26 Copynumber: 3.2 Consensus size: 25
61489333 TGAGAGGCTA
61489343 AAATGTGAAATAAATGAAATATGTG
1 AAATGTGAAATAAATGAAATATGTG
** * *
61489368 ATTTTATGAAATAAATGAAATAAGTG
1 A-AATGTGAAATAAATGAAATATGTG
*
61489394 AAATGTGAAA-ATGA-GAAATATGTG
1 AAATGTGAAATA-AATGAAATATGTG
61489418 AAAT
1 AAAT
61489422 AAATTCGGCT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
24 14 0.33
25 8 0.19
26 21 0.49
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (25 bp):
AAATGTGAAATAAATGAAATATGTG
Found at i:61490560 original size:14 final size:13
Alignment explanation
Indices: 61490537--61490568 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
61490527 GGGATATCAA
61490537 AACAATAATTAAG
1 AACAATAATTAAG
61490550 AACACATAATTAAG
1 AACA-ATAATTAAG
61490564 AACAA
1 AACAA
61490569 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:61491127 original size:42 final size:42
Alignment explanation
Indices: 61491046--61491127 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
61491036 TCAAAATTGA
* *
61491046 GCACACGGGTAGAGACACGGGTGTGTGTCTCAGCTGTGTGTG
1 GCACACGGCTAGAGACACGGGTGTGTGTCTCAGCCGTGTGTG
* **
61491088 GCACACGGCCTAGA-ACATGGGTGTGTGTCTTGGCCGTGTG
1 GCACACGG-CTAGAGACACGGGTGTGTGTCTCAGCCGTGTG
61491128 AAACCTACAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 30 0.88
43 4 0.12
ACGTcount: A:0.16, C:0.21, G:0.39, T:0.24
Consensus pattern (42 bp):
GCACACGGCTAGAGACACGGGTGTGTGTCTCAGCCGTGTGTG
Found at i:61492793 original size:34 final size:34
Alignment explanation
Indices: 61492694--61492794 Score: 150
Period size: 34 Copynumber: 3.0 Consensus size: 34
61492684 ATTAGGCCCT
* *
61492694 ACTGCTAATGTTACTGAAATGGGCTCAGGCCCAG
1 ACTGCTACTGTTACTGAAATGGGCTCAGGCCTAG
*
61492728 ACTGCTACTGTTAGTGAAATGGGCTCAGGCCTAG
1 ACTGCTACTGTTACTGAAATGGGCTCAGGCCTAG
*
61492762 ACTGCTACTGTTACTGAAATAGGCT-AGGGCCTA
1 ACTGCTACTGTTACTGAAATGGGCTCA-GGCCTA
61492795 AATGATACTG
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
33 1 0.02
34 60 0.98
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (34 bp):
ACTGCTACTGTTACTGAAATGGGCTCAGGCCTAG
Found at i:61492803 original size:27 final size:26
Alignment explanation
Indices: 61492773--61492823 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
61492763 CTGCTACTGT
61492773 TACTGAAATAGGC-TAGGGCCTAAATGA
1 TACTGAAA-AGGCTTA-GGCCTAAATGA
*
61492800 TACTGAAAGGGCTTAGGCCTAAAT
1 TACTGAAAAGGCTTAGGCCTAAAT
61492824 TGTGATTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (26 bp):
TACTGAAAAGGCTTAGGCCTAAATGA
Found at i:61507328 original size:49 final size:48
Alignment explanation
Indices: 61507267--61507663 Score: 579
Period size: 47 Copynumber: 8.3 Consensus size: 48
61507257 GTATGAGATA
* * * *
61507267 TATATCTGTGATAAGTCCTAATGGACGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG-GTG
*
61507316 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG-GTG
*
61507365 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG-GTG
*
61507414 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGGTG
61507461 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTG-AAGGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGGTG
61507508 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTG-AAGGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGGTG
* * *
61507555 TATATATGTGATAAGGCCGAATGGCCAACGTGATGGATGTGAAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGGTG
* * * * * *
61507602 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGGTG
*
61507649 TATAAATGTGATAAG
1 TATATATGTGATAAG
61507664 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 12, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
47 194 0.58
48 5 0.01
49 136 0.41
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (48 bp):
TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGGTG
Found at i:61509538 original size:28 final size:29
Alignment explanation
Indices: 61509471--61509571 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
61509461 ATAGTGAATC
*
61509471 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
61509500 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
61509528 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
61509558 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61509572 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:61517345 original size:28 final size:29
Alignment explanation
Indices: 61517278--61517378 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
61517268 ATAGTGAATC
*
61517278 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
61517307 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
61517335 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
61517365 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61517379 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:61526651 original size:40 final size:39
Alignment explanation
Indices: 61526540--61526691 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
61526530 TATAACATGT
* ** *
61526540 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
61526580 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
61526620 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
61526660 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
61526692 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:61526674 original size:80 final size:80
Alignment explanation
Indices: 61526540--61526691 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
61526530 TATAACATGT
* *
61526540 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
61526605 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
61526620 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
61526683 CCCGGATAT
64 CCCGGATAT
61526692 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:61528534 original size:29 final size:29
Alignment explanation
Indices: 61528475--61528548 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
61528465 TAATCAGCCG
*
61528475 CGCACACTTAGTGCCATATACTTTAAACT
1 CGCACACTTAGTGCCATACACTTTAAACT
* * *
61528504 CGCACACTTAGTGCCGTGCA-TTTCAAGCT
1 CGCACACTTAGTGCCATACACTTT-AAACT
*
61528533 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61528549 ATCTCTCAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACACTTTAAACT
Found at i:61533546 original size:47 final size:50
Alignment explanation
Indices: 61533477--61533610 Score: 179
Period size: 47 Copynumber: 2.8 Consensus size: 50
61533467 AGGGTATAAT
*
61533477 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATC-CATT-AA-
1 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCGAATTCAAG
*
61533524 GTCGATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCGAATTCAAG
1 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCGAATTCAAG
* * *
61533573 GCCGACGCCATGTTCC-AGACATGGTCTTACACTAGCTC
1 GTCGATGCCATG-TCCTAGACATGGTCTTACACTGGCTC
61533611 TCACATATCC
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
46 3 0.04
47 39 0.51
48 2 0.03
49 29 0.38
50 3 0.04
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCGAATTCAAG
Found at i:61534766 original size:39 final size:39
Alignment explanation
Indices: 61534707--61534871 Score: 249
Period size: 39 Copynumber: 4.2 Consensus size: 39
61534697 TTGAACCCGT
* ** * *
61534707 ATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCTG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
* *
61534746 ATACATTTCTAGCATATAGCCTGCGGACCTCATGTCCGG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
61534785 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
* *
61534824 ATATATTTCCAGCATATAGCATGCGGACCTCATGTCTGG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
61534863 ATATATTTC
1 ATATATTTC
61534872 TAGTCTCATA
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (39 bp):
ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
Found at i:61560642 original size:49 final size:50
Alignment explanation
Indices: 61560583--61560724 Score: 162
Period size: 51 Copynumber: 2.8 Consensus size: 50
61560573 AGGTGGAAGT
* * *
61560583 AGTGGTAGTATATCTGTAAATTAGTGGTGGCTTGTCC-CAAAAAT-TTTTC
1 AGTGGCAGTATATCT-TAAATCAGTGGTGGCTTGTCCACAAAAATGTTATC
* * *
61560632 AGTGGCAGTATATCTTCATATCAATGGTGGCTTGTCCACAAAAGTGTTATC
1 AGTGGCAGTATATCTT-AAATCAGTGGTGGCTTGTCCACAAAAATGTTATC
* * *
61560683 AGTGGCAGTTTATCTACAAATCAGTGGTGTCTTGTCCACAAA
1 AGTGGCAGTATATCT-TAAATCAGTGGTGGCTTGTCCACAAA
61560725 TGGTGTTACG
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
48 1 0.01
49 31 0.40
50 6 0.08
51 40 0.51
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (50 bp):
AGTGGCAGTATATCTTAAATCAGTGGTGGCTTGTCCACAAAAATGTTATC
Found at i:61561264 original size:23 final size:23
Alignment explanation
Indices: 61561238--61561299 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
61561228 AATTTATTGA
*
61561238 ATTTATATTAAACAAGTTGTTTT
1 ATTTATACTAAACAAGTTGTTTT
* * *
61561261 ATTTTTCCTAATCAAGTTGTTTT
1 ATTTATACTAAACAAGTTGTTTT
**
61561284 ATAAATACTAAACAAG
1 ATTTATACTAAACAAG
61561300 GGTTCTTTTA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (23 bp):
ATTTATACTAAACAAGTTGTTTT
Found at i:61566032 original size:40 final size:41
Alignment explanation
Indices: 61565988--61566136 Score: 173
Period size: 41 Copynumber: 3.7 Consensus size: 41
61565978 TAATAGCTCA
*
61565988 CACAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAACTCG
1 CACAAATGCCTTCGGGATCTTAGCCCGGATTTGGGAACTCG
* *
61566028 CACAAATGCCTT-TGGATCTTAGTCCGGATTTTGGGAACTCG
1 CACAAATGCCTTCGGGATCTTAGCCCGGA-TTTGGGAACTCG
* * * **
61566069 CACAGATGCCTTC-GGATCTTAGTCCGGATATGGTCACTCAG
1 CACAAATGCCTTCGGGATCTTAGCCCGGATTTGGGAACTC-G
61566110 CACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CACAAATGCCTTCGGGATCTTAGCCCGGA
61566137 CATCATTCGA
Statistics
Matches: 95, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
39 3 0.03
40 45 0.47
41 47 0.49
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (41 bp):
CACAAATGCCTTCGGGATCTTAGCCCGGATTTGGGAACTCG
Found at i:61566130 original size:81 final size:81
Alignment explanation
Indices: 61565988--61566136 Score: 178
Period size: 81 Copynumber: 1.8 Consensus size: 81
61565978 TAATAGCTCA
* * *
61565988 CACAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCGCACAAATGCCTTTGGATCTTAGTCC
1 CACAAATGCCTTCGGGACTTAACCCGGATATGGGAACTCGCACAAATGCCTTGGGATCTTAGCCC
61566053 GGATTTTGGGAACTCG
66 GGATTTTGGGAACTCG
* ** **
61566069 CACAGATGCCTTC-GGATCTTAGTCCGGATATGGTCACTCAGCACAAA-GCCTTCGGGA-CTTAG
1 CACAAATGCCTTCGGGA-CTTAACCCGGATATGGGAACTC-GCACAAATGCCTT-GGGATCTTAG
61566131 CCCGGA
63 CCCGGA
61566137 CATCATTCGA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
80 3 0.05
81 44 0.77
82 10 0.18
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (81 bp):
CACAAATGCCTTCGGGACTTAACCCGGATATGGGAACTCGCACAAATGCCTTGGGATCTTAGCCC
GGATTTTGGGAACTCG
Found at i:61572848 original size:40 final size:40
Alignment explanation
Indices: 61572789--61572975 Score: 140
Period size: 40 Copynumber: 4.7 Consensus size: 40
61572779 CAATTGAATG
* * *
61572789 ATATCCGGGCTAAGTCCCGAAGACATTTAAGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTAAGCTAGTAACT
* * ** *
61572829 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTAAGCTAGTAACT
* *** * ***
61572869 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTAAGCTAGTAACT
* * * ** * ***
61572909 AAATCCAGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTAAGCTAGTAACT
*
61572949 ATATCCGGTCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
61572976 CGTGCATGTG
Statistics
Matches: 122, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTAAGCTAGTAACT
Found at i:61572981 original size:40 final size:39
Alignment explanation
Indices: 61572827--61572997 Score: 186
Period size: 40 Copynumber: 4.3 Consensus size: 39
61572817 AAGCTAGTAA
*
61572827 TTATATCCGGGT-TAAGACCCGAAGGCAATT-GTGCTAGTG
1 TTATATCC-GGTCTAAGACCCGAAGGC-ATTCGTGCAAGTG
* * *
61572866 ACTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TTATATCCGGTCTAAGACCCGAAGGCATTCGTGCAAG-TG
* * *
61572907 TTAAATCCAGG-CTAATACCCGAAGGCATTTGTGCAAGTCG
1 TTATATCC-GGTCTAAGACCCGAAGGCATTCGTGCAAGT-G
*
61572947 TTATATCCGGTCTAAGACCCGAAGGCATTCGTGCATGTGG
1 TTATATCCGGTCTAAGACCCGAAGGCATTCGTGCAAGT-G
61572987 TTATATCCGGT
1 TTATATCCGGT
61572998 TGTATTCTGA
Statistics
Matches: 112, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
39 8 0.07
40 100 0.89
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
TTATATCCGGTCTAAGACCCGAAGGCATTCGTGCAAGTG
Found at i:61576277 original size:29 final size:29
Alignment explanation
Indices: 61576245--61576319 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
61576235 GTTTGAGAGA
* *
61576245 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
61576274 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
61576303 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
61576320 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:61584134 original size:29 final size:29
Alignment explanation
Indices: 61584099--61584172 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
61584089 GTTGTGAGAT
* * *
61584099 TGGCACTAAGTGTGTGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
61584128 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
61584157 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61584173 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:61586838 original size:39 final size:39
Alignment explanation
Indices: 61586784--61587020 Score: 375
Period size: 39 Copynumber: 6.1 Consensus size: 39
61586774 GAAATGTGTA
61586784 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
61586823 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
61586862 TGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* *
61586901 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* *
61586940 TGGAAATGTTTCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
61586979 TGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
61587018 TGG
1 TGG
61587021 TAATGAAATT
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 181 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:61586990 original size:117 final size:117
Alignment explanation
Indices: 61586784--61587020 Score: 429
Period size: 117 Copynumber: 2.0 Consensus size: 117
61586774 GAAATGTGTA
* *
61586784 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
1 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGACCC
61586849 GCAGGCTTTGTGCTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTTGTGC
66 GCAGGCTTTGTGCTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTTGTGC
* * *
61586901 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTCGTGCTGGAAATGTTTCCGGGCTAAAGACCC
1 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGACCC
61586966 GCAGGCTTTGTGCTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTTGTGC
66 GCAGGCTTTGTGCTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTTGTGC
61587018 TGG
1 TGG
61587021 TAATGAAATT
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (117 bp):
TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGACCC
GCAGGCTTTGTGCTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTTGTGC
Found at i:61590160 original size:6 final size:6
Alignment explanation
Indices: 61590149--61590329 Score: 61
Period size: 6 Copynumber: 29.3 Consensus size: 6
61590139 TGACAAAATT
* * *
61590149 AGAATC AGAATC AGTATC AGGTAA-C AAAATC CGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
* * * * *
61590198 CGAATT AG-GTGAC AGAATC AGAATC AGTA-C AGGTAA-C AGAATG AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * * * *
61590247 AGAATT AG-GTGAC AAAATC AGAATC AGTATC AGGTAA-C AAAATC AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * *
61590297 AGAATT AG-GTGAC AGAATC AGAATC AGTATC AG
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC AG
61590330 GTAACATAAT
Statistics
Matches: 126, Mismatches: 31, Indels: 36
0.65 0.16 0.19
Matches are distributed among these distances:
5 11 0.09
6 96 0.76
7 14 0.11
8 5 0.04
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:61590190 original size:37 final size:37
Alignment explanation
Indices: 61590149--61590301 Score: 109
Period size: 37 Copynumber: 4.1 Consensus size: 37
61590139 TGACAAAATT
* *
61590149 AGAATCAGAATCAGTATCAGGTAACAAAATCCGAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATCAGAATC
* * * *
61590186 AGAATCAGAATCCGAATTAGGTGACAGAATCAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATCAGAATC
* * * * *
61590223 AGTA-CAGGTAA-CAGAATGA-G-AATCAGAATTAG-GTGAC
1 AGAATCA-G-AATCAGAATCAGGTAA-CAAAATCAGAAT--C
* *
61590260 AAAATCAGAATCAGTATCAGGTAACAAAATCAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATCAGAATC
61590297 AGAAT
1 AGAAT
61590302 TAGGTGACAG
Statistics
Matches: 86, Mismatches: 20, Indels: 20
0.68 0.16 0.16
Matches are distributed among these distances:
35 2 0.02
36 13 0.15
37 56 0.65
38 12 0.14
39 3 0.03
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGGTAACAAAATCAGAATC
Found at i:61590213 original size:25 final size:25
Alignment explanation
Indices: 61590185--61590348 Score: 186
Period size: 25 Copynumber: 6.6 Consensus size: 25
61590175 AAATCCGAAT
*
61590185 CAGAATCAGAATCCGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
* * *
61590210 CAGAATCAGAATCAGTA-CAGGTAA
1 CAGAATCAGAATCAGAATTAGGTGA
*
61590234 CAGAATGAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
* * * *
61590259 CAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATTAGGTGA
*
61590284 CAAAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
* * *
61590309 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATTAGGTGA
* *
61590334 CATAATTAGAATCAG
1 CAGAATCAGAATCAG
61590349 GATGTGAATG
Statistics
Matches: 116, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
24 20 0.17
25 96 0.83
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTGA
Found at i:61590302 original size:50 final size:50
Alignment explanation
Indices: 61590188--61590348 Score: 261
Period size: 50 Copynumber: 3.2 Consensus size: 50
61590178 TCCGAATCAG
* *
61590188 AATCAGAATCCGAATTAGGTGACAGAATCAGAATCAGTA-CAGGTAACAG
1 AATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGTATCAGGTAACAA
* *
61590237 AATGAGAATCAGAATTAGGTGACAAAATCAGAATCAGTATCAGGTAACAA
1 AATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGTATCAGGTAACAA
*
61590287 AATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGTATCAGGTAACAT
1 AATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGTATCAGGTAACAA
*
61590337 AATTAGAATCAG
1 AATCAGAATCAG
61590349 GATGTGAATG
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
49 36 0.35
50 67 0.65
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (50 bp):
AATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGTATCAGGTAACAA
Found at i:61590506 original size:27 final size:26
Alignment explanation
Indices: 61590469--61590554 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 26
61590459 AGCATGGCTG
*
61590469 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
61590495 CCAGATACAGATATTGTGGA-AGAGCCA
1 CCAGA-ACAGATATTGT-GACAGAGCCA
* * *
61590522 CCAGAACAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
61590549 CCAGAA
1 CCAGAA
61590555 ATAGATAATG
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
26 12 0.23
27 38 0.73
28 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:61590561 original size:54 final size:53
Alignment explanation
Indices: 61590469--61590576 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
61590459 AGCATGGCTG
* * * *
61590469 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGG-AAGAGCCA
1 CCAGAACAAATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAA-AGCCA
* * *
61590522 CCAGAACAAATATTTGTGGCATAGCCACCAGAAATAGATAATGTGGCAAAGCCA
1 CCAGAACAAATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
61590576 C
1 C
61590577 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 11 0.24
54 33 0.72
55 2 0.04
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (53 bp):
CCAGAACAAATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
Found at i:61590566 original size:27 final size:26
Alignment explanation
Indices: 61590469--61590576 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 26
61590459 AGCATGGCTG
* * * *
61590469 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAAAAGATATTGTGGCAAAGCCA
*
61590495 CCAGATACAGATATTGTGG-AAGAGCCA
1 CCAGA-AAAGATATTGTGGCAA-AGCCA
*
61590522 CCAGAACAA-ATATTTGTGGCATAGCCA
1 CCAGAA-AAGATA-TTGTGGCAAAGCCA
*
61590549 CCAGAAATAGATAATGTGGCAAAGCCA
1 CCAGAAA-AGATATTGTGGCAAAGCCA
61590576 C
1 C
61590577 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
26 11 0.16
27 53 0.78
28 4 0.06
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAAAAGATATTGTGGCAAAGCCA
Found at i:61591173 original size:27 final size:27
Alignment explanation
Indices: 61591143--61591277 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
61591133 GGGGTAAAAT
* * * *
61591143 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
61591170 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
61591197 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61591224 GATAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
61591251 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
61591278 AATAATTTTG
Statistics
Matches: 94, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:61592376 original size:45 final size:45
Alignment explanation
Indices: 61592242--61592448 Score: 176
Period size: 45 Copynumber: 4.7 Consensus size: 45
61592232 TACAGCCACT
* * *
61592242 GTCCCAGACAG-GGTCTTACACG-AATCA-A-ATAT-GATGCCGAT
1 GTCCCAGAC-GTGGTCTTACACGAAAACACATATATCGATGCCAAC
* * * * * *
61592283 GTCCAAGACATAGTCTTACTCG-TAAC-CATATATTGATGCCAAC
1 GTCCCAGACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
* * * * *
61592326 ATCCCAGACGTGGTCCTACATGAAAGCACATATGTCGATGCCAAC
1 GTCCCAGACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
* * *
61592371 GTCCCAGACATGGTCTTACACGAAAACACATATATCAATGCCAAT
1 GTCCCAGACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
* * *
61592416 GTCCCAAATGTGGTCTTACACAAAAACACATAT
1 GTCCCAGACGTGGTCTTACACGAAAACACATAT
61592449 CAAAATCCTA
Statistics
Matches: 129, Mismatches: 31, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
41 20 0.16
42 4 0.03
43 22 0.17
44 2 0.02
45 81 0.63
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.23
Consensus pattern (45 bp):
GTCCCAGACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
Found at i:61594155 original size:27 final size:27
Alignment explanation
Indices: 61594079--61594168 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
61594069 TTTAGTTTAC
* *
61594079 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
61594106 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
61594133 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
61594160 TAAAATTAC
1 TAAAATTAC
61594169 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:61594178 original size:54 final size:54
Alignment explanation
Indices: 61594079--61594185 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
61594069 TTTAGTTTAC
* * *
61594079 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
61594133 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
61594186 ACATAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:61594204 original size:27 final size:27
Alignment explanation
Indices: 61594174--61594276 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
61594164 ATTACCAAAG
*
61594174 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACATAATTACCGTTT
*
61594201 TACCCAT-GATTTACATAATTATCGTTT
1 TACCC-TCGATTTACATAATTACCGTTT
* * * **
61594228 TACCCTCGACTTACAGAGTTATTGTTT
1 TACCCTCGATTTACATAATTACCGTTT
*
61594255 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACATAATTAC
61594277 TAAAATACCC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.02
27 63 0.98
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACATAATTACCGTTT
Found at i:61594313 original size:54 final size:54
Alignment explanation
Indices: 61594255--61594394 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
61594245 GTTATTGTTT
* **
61594255 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
61594309 TACCC-CTAGTTTGTAAAATTA-TCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACT-AAAATACCCTTAGTTTGTAAAATTACCAAAA
*
61594363 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACTAAAATACCC
61594395 CTGATTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.03
54 70 0.96
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:61594418 original size:81 final size:81
Alignment explanation
Indices: 61594270--61594424 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
61594260 TCGATTTACA
* * * *
61594270 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCAAA
61594335 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
*
61594351 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTATCA
61594413 GAAATACCCTTG
64 -AAATACCCTTG
61594425 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 56 0.85
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCAAA
ATACCCTTGGTTTGTG
Found at i:61594484 original size:27 final size:27
Alignment explanation
Indices: 61594268--61594485 Score: 140
Period size: 27 Copynumber: 8.0 Consensus size: 27
61594258 CCTCGATTTA
61594268 CAAAATTACTAAAATACCCTTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
* * *
61594295 TAAAATTACCAAAATACCCCTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
* *
61594322 TAAAATTA-TCAAAATACCCTTGGTTTG
1 CAAAATTACT-AAAATACCCTTAGTTTG
** ** * *
61594349 TGAAATTACCGAAATACCCTCAATTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
* * * *
61594376 TAAAATTACCAAAATACCCCT-GATTTA
1 CAAAATTACTAAAATACCCTTAG-TTTG
* *
61594403 CAAAGTTAC-AGAAATACCCTTGACTTT-
1 CAAAATTACTA-AAATACCCTT-AGTTTG
* * *
61594430 CTAAAAATTA-TAGAAATACCATTGGTTTA
1 C--AAAATTACTA-AAATACCCTTAGTTTG
* *
61594459 CAAAATTACTGAAATACACTTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
61594486 TAGATTTACC
Statistics
Matches: 149, Mismatches: 31, Indels: 22
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.01
27 123 0.83
28 7 0.05
29 18 0.12
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
CAAAATTACTAAAATACCCTTAGTTTG
Found at i:61594602 original size:27 final size:27
Alignment explanation
Indices: 61594525--61594602 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
61594515 AAATGACTAA
* *
61594525 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
61594552 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
61594579 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
61594603 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:61595791 original size:25 final size:25
Alignment explanation
Indices: 61595762--61595809 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61595752 TTATAACATG
* * *
61595762 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
61595787 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
61595810 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:61595912 original size:20 final size:20
Alignment explanation
Indices: 61595846--61595912 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
61595836 ATTTTGATAA
* *
61595846 ACATGGTATGTATGATATAC
1 ACATGATATGTATGATATGC
*
61595866 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
61595886 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
61595906 ACATGAT
1 ACATGAT
61595913 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:61595989 original size:24 final size:24
Alignment explanation
Indices: 61595962--61596084 Score: 205
Period size: 24 Copynumber: 5.2 Consensus size: 24
61595952 GAGGAAGTGA
61595962 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61595986 AAAAGGGCTTGTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
61596010 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61596033 -AAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61596056 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
61596080 AAAAG
1 AAAAG
61596085 AGGCGAGGTG
Statistics
Matches: 95, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
23 44 0.46
24 51 0.54
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:61596017 original size:23 final size:23
Alignment explanation
Indices: 61595963--61596082 Score: 195
Period size: 23 Copynumber: 5.1 Consensus size: 23
61595953 AGGAAGTGAA
61595963 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
61595986 AAAAGGGCTTGTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
61596010 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
61596033 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
61596056 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
61596080 AAA
1 AAA
61596083 AGAGGCGAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 47 0.51
24 45 0.49
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:61596032 original size:47 final size:48
Alignment explanation
Indices: 61595962--61596084 Score: 214
Period size: 47 Copynumber: 2.6 Consensus size: 48
61595952 GAGGAAGTGA
61595962 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTGTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTGTGCCCCAGTTATT
*
61596010 -AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTGTGCCCCAGTTATT
*
61596056 AAAAGGGCTTTTGCCCCAGTTATTAAAAG
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG
61596085 AGGCGAGGTG
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
46 22 0.31
47 45 0.63
48 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTGTGCCCCAGTTATT
Found at i:61596290 original size:31 final size:31
Alignment explanation
Indices: 61596247--61596306 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
61596237 TACAGTAAAG
* *
61596247 GCTTTGGCCCAGTAATATGAAATTTGAAAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAAAA
**
61596278 GCTTCGGCCCAGTGTTATGAAATATGAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAA
61596307 TATGAAAAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAATATGAAAAA
Found at i:61599239 original size:27 final size:28
Alignment explanation
Indices: 61599178--61599250 Score: 112
Period size: 27 Copynumber: 2.6 Consensus size: 28
61599168 TTAAAATTTG
61599178 TACAGCACTAAGTGTGCGAGTTTGATCA
1 TACAGCACTAAGTGTGCGAGTTTGATCA
*
61599206 TACAGCACTAAGTGTGCGAG-TTGATTA
1 TACAGCACTAAGTGTGCGAGTTTGATCA
* *
61599233 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
61599251 GACTCACTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.52
28 20 0.48
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
TACAGCACTAAGTGTGCGAGTTTGATCA
Found at i:61606194 original size:58 final size:58
Alignment explanation
Indices: 61606098--61606209 Score: 156
Period size: 58 Copynumber: 1.9 Consensus size: 58
61606088 TGAAAAAGAA
61606098 AAAAGAAAAAAAATTGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGGAAAG
1 AAAAGAAAAAAAATTGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGGAAAG
* ***
61606156 AAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAAGAAAAAAAATTGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
61606210 GAAAAGGGGA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
57 2 0.04
58 43 0.90
59 3 0.06
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (58 bp):
AAAAGAAAAAAAATTGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGGAAAG
Found at i:61607469 original size:40 final size:40
Alignment explanation
Indices: 61607403--61607569 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
61607393 AAATTGAATG
* * *
61607403 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
61607442 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
61607482 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* ** *
61607522 CTATCCGGGCTAAGACCCGAAGGC-ATGTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAAT-TGTGCTGGTAATT
61607562 ATATCCGG
1 ATATCCGG
61607570 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.84
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:61611759 original size:27 final size:28
Alignment explanation
Indices: 61611698--61611767 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
61611688 AAATTTGTAC
* *
61611698 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
61611726 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
61611753 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61611768 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:61619760 original size:27 final size:28
Alignment explanation
Indices: 61619699--61619768 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
61619689 AAATTTGTAC
* *
61619699 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
61619727 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
61619754 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61619769 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:61623215 original size:27 final size:27
Alignment explanation
Indices: 61623139--61623228 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
61623129 TTTAGTTTAC
* *
61623139 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
61623166 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
61623193 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
61623220 TAAAATTAC
1 TAAAATTAC
61623229 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:61623253 original size:27 final size:27
Alignment explanation
Indices: 61623223--61623281 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
61623213 CGACTTGTAA
61623223 AATTACCAAAGTACCCCTGATTTACAT
1 AATTACCAAAGTACCCCTGATTTACAT
****
61623250 AATTACCGTTTTACCCCTGATTTACAT
1 AATTACCAAAGTACCCCTGATTTACAT
61623277 AATTA
1 AATTA
61623282 TCGTTTTACC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.36
Consensus pattern (27 bp):
AATTACCAAAGTACCCCTGATTTACAT
Found at i:61623337 original size:27 final size:27
Alignment explanation
Indices: 61623237--61623337 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
61623227 ACCAAAGTAC
*
61623237 CCCT-GATTTACATAATTACCGTTTTA
1 CCCTCGATTTACATAATTACTGTTTTA
61623263 CCC-CTGATTTACATAATTA-TCGTTTTA
1 CCCTC-GATTTACATAATTACT-GTTTTA
* *
61623290 CCCTCGACTTACAGAATTACTGTTTTA
1 CCCTCGATTTACATAATTACTGTTTTA
*
61623317 CCCTCGATTTACAAAATTACT
1 CCCTCGATTTACATAATTACT
61623338 AAAATACCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
26 3 0.05
27 60 0.92
28 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACATAATTACTGTTTTA
Found at i:61623345 original size:27 final size:27
Alignment explanation
Indices: 61623288--61623537 Score: 102
Period size: 27 Copynumber: 9.2 Consensus size: 27
61623278 ATTATCGTTT
* * ****
61623288 TACCCTCGACTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
61623315 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
61623342 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* **
61623369 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* * ***
61623396 TACCCTTGGTTTGTGAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
61623423 TACCCT-TATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
61623449 TACCCCTC-ATTTACAAAGTTAC-AGAAA
1 TA-CCCTCGATTTACAAAATTACTA-AAA
* *
61623476 TACCTTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
61623505 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
61623532 TACCCT
1 TACCCT
61623538 TAGTTTGTAG
Statistics
Matches: 179, Mismatches: 29, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
26 23 0.13
27 129 0.72
28 8 0.04
29 19 0.11
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:61623543 original size:27 final size:27
Alignment explanation
Indices: 61623328--61623544 Score: 167
Period size: 27 Copynumber: 8.0 Consensus size: 27
61623318 CCTCGATTTA
61623328 CAAAATTACTAAAATACCCTTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
* * *
61623355 TAAAATTACCAAAATACCCCTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
* *
61623382 TAAAATTA-TCAAAATACCCTTGGTTTG
1 CAAAATTACT-AAAATACCCTTAGTTTG
**
61623409 TGAAATTACTAAAATACCCTTA-TTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
* * * *
61623435 TAAAATTACCAAAATACCCCTCA-TTTA
1 CAAAATTACTAAAATA-CCCTTAGTTTG
* * *
61623462 CAAAGTTAC-AGAAATACCTTTGACTTT-
1 CAAAATTACTA-AAATACCCTT-AGTTTG
* * *
61623489 CTAAAAATTA-TAGAAATACCATTGGTTTA
1 C--AAAATTACTA-AAATACCCTTAGTTTG
*
61623518 CAAAATTACTGAAATACCCTTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
61623545 TAGATTTACC
Statistics
Matches: 155, Mismatches: 24, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
26 22 0.14
27 107 0.69
28 8 0.05
29 18 0.12
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (27 bp):
CAAAATTACTAAAATACCCTTAGTTTG
Found at i:61623661 original size:27 final size:27
Alignment explanation
Indices: 61623584--61623661 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
61623574 AAATGACTAA
* *
61623584 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* * *
61623611 AA-AGACCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
61623638 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
61623662 GAATATGCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:61624850 original size:25 final size:25
Alignment explanation
Indices: 61624821--61624868 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61624811 TTATAACATG
* * *
61624821 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
61624846 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
61624869 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:61624952 original size:11 final size:11
Alignment explanation
Indices: 61624916--61624971 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
61624906 CATGGTATGT
61624916 ATGATATGCAC
1 ATGATATGCAC
* *
61624927 ATGACATG--T
1 ATGATATGCAC
61624936 ATGATATGCAC
1 ATGATATGCAC
*
61624947 ATGATATG--T
1 ATGATATGCAC
61624956 ATGATATGCAC
1 ATGATATGCAC
61624967 ATGAT
1 ATGAT
61624972 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:61624971 original size:20 final size:20
Alignment explanation
Indices: 61624905--61624971 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
61624895 ATTTTGATAA
*
61624905 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
61624925 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
61624945 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
61624965 ACATGAT
1 ACATGAT
61624972 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:61625100 original size:24 final size:24
Alignment explanation
Indices: 61625021--61625124 Score: 140
Period size: 23 Copynumber: 4.4 Consensus size: 24
61625011 GAGGAAGTGA
* *
61625021 AAAAGGGCGTATGCCCCAGTTACT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61625045 -AAAGGGCTTGTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61625068 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61625091 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
61625115 AAAAGAGGCT
1 AAAAG-GGCT
61625125 AGGCCTCTAG
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
23 41 0.58
24 26 0.37
25 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:61625111 original size:47 final size:46
Alignment explanation
Indices: 61625022--61625117 Score: 147
Period size: 47 Copynumber: 2.1 Consensus size: 46
61625012 AGGAAGTGAA
61625022 AAAGGGCGTATGCCCCAGTTACTAAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCGTATGCCCCAGTTACTAAAGGGCTTGTGCCCCAGTTATT
* * * *
61625068 AAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCGTATGCCCCAGTTACT-AAAGGGCTTGTGCCCCAGTTATT
61625115 AAA
1 AAA
61625118 AGAGGCTAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 20 0.44
47 25 0.56
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (46 bp):
AAAGGGCGTATGCCCCAGTTACTAAAGGGCTTGTGCCCCAGTTATT
Found at i:61625366 original size:31 final size:31
Alignment explanation
Indices: 61625331--61625394 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
61625321 CGTTTACAGT
*
61625331 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
61625362 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
61625393 AA
1 AA
61625395 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:61626588 original size:14 final size:15
Alignment explanation
Indices: 61626571--61626599 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
61626561 TCCCGAAAAT
61626571 TTCACACAT-ATAAA
1 TTCACACATAATAAA
61626585 TTCACACATAATAAA
1 TTCACACATAATAAA
61626600 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:61632036 original size:42 final size:41
Alignment explanation
Indices: 61631968--61632173 Score: 205
Period size: 43 Copynumber: 4.8 Consensus size: 41
61631958 GTCAATTTGA
* *
61631968 GATTTACGTGTAAGACCATGTTTGGGACATCGGCATCGTATTT
1 GATTT-CGTATAAGACCATGTCTGGGACAT-GGCATCGTATTT
* * *
61632011 GGTTTCGTATAAGACCTTTTCTGGGACCATGGCATCGATATTT
1 GATTTCGTATAAGACCATGTCTGGGA-CATGGCATCG-TATTT
* * * *
61632054 GATTACATGTAAGACCATGTCTGGGACATCGACATCGTATTT
1 GATTTCGTATAAGACCATGTCTGGGACAT-GGCATCGTATTT
* *
61632096 GATTTCGTATAAGACCCTGTCTGGGACAATGGCATCAATATTT
1 GATTTCGTATAAGACCATGTCTGGGAC-ATGGCATC-GTATTT
* * * *
61632139 GATTACATGTAAGACCATGTTTGGGACATTGGCAT
1 GATTTCGTATAAGACCATGTCTGGGACA-TGGCAT
61632174 TGTACAAGCT
Statistics
Matches: 134, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
42 61 0.46
43 73 0.54
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (41 bp):
GATTTCGTATAAGACCATGTCTGGGACATGGCATCGTATTT
Found at i:61632079 original size:85 final size:85
Alignment explanation
Indices: 61631971--61632173 Score: 325
Period size: 85 Copynumber: 2.4 Consensus size: 85
61631961 AATTTGAGAT
* * * *
61631971 TTACGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGGTTTCGTATAAGACCTTTTCTGGG
1 TTACATGTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTTCGTATAAGACCCTGTCTGGG
* *
61632036 ACCATGGCATCGATATTTGA
66 ACAATGGCATCAATATTTGA
* *
61632056 TTACATGTAAGACCATGTCTGGGACATCGACATCGTATTTGATTTCGTATAAGACCCTGTCTGGG
1 TTACATGTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTTCGTATAAGACCCTGTCTGGG
61632121 ACAATGGCATCAATATTTGA
66 ACAATGGCATCAATATTTGA
*
61632141 TTACATGTAAGACCATGTTTGGGACATTGGCAT
1 TTACATGTAAGACCATGTTTGGGACATCGGCAT
61632174 TGTACAAGCT
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 107 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (85 bp):
TTACATGTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTTCGTATAAGACCCTGTCTGGG
ACAATGGCATCAATATTTGA
Found at i:61639690 original size:44 final size:42
Alignment explanation
Indices: 61639631--61639783 Score: 155
Period size: 43 Copynumber: 3.6 Consensus size: 42
61639621 TTCTGATATG
*
61639631 TGATTTCGTGCAAGACCATGTCTGAGACATTGGCATCG-ATT
1 TGATTTCGTGTAAGACCATGTCTGAGACATTGGCATCGTATT
* * *
61639672 TGAGATTTACGTGTAAGACCATTTCTGGGACATAGGCATCGTATT
1 T--GATTT-CGTGTAAGACCATGTCTGAGACATTGGCATCGTATT
* * * *
61639717 TGATTTCGTGTAAGACCCTGTCTGAGATAGTGGCATCAATATT
1 TGATTTCGTGTAAGACCATGTCTGAGACATTGGCATC-GTATT
* * * *
61639760 TGATTACATGTAAGTCCACGTCTG
1 TGATTTCGTGTAAGACCATGTCTG
61639784 GGACGTTGAC
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 33 0.36
44 28 0.31
45 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGAGACATTGGCATCGTATT
Found at i:61642465 original size:79 final size:79
Alignment explanation
Indices: 61642329--61642503 Score: 248
Period size: 79 Copynumber: 2.2 Consensus size: 79
61642319 CGGATGATAA
* * * *
61642329 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCGAAGGCATTTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCGAAGGCATTTAT
*
61642394 GCTAG-TGATTATAT
66 GCGAGTTG-TTATAT
* *
61642408 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCGAAGGCATTTGT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCGAAGGCATTTAT
61642473 GCGAGTTGTTATAT
66 GCGAGTTGTTATAT
61642487 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
61642504 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
77 1 0.01
78 13 0.15
79 71 0.82
80 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCGAAGGCATTTAT
GCGAGTTGTTATAT
Found at i:61642503 original size:39 final size:39
Alignment explanation
Indices: 61642329--61642494 Score: 219
Period size: 39 Copynumber: 4.2 Consensus size: 39
61642319 CGGATGATAA
* *
61642329 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
61642369 CCGGGCTATGTCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCGAAGGCATTTGTGCGAGTTG-CTATAT
61642408 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGCTATAT
*
61642448 CCGGGCTAAGACCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCGAAGGCATTTGTGCGAGTTGCTATAT
61642487 CC-GGCTAA
1 CCGGGCTAA
61642495 ATCCCGAAGA
Statistics
Matches: 110, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
38 8 0.07
39 59 0.54
40 41 0.37
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGACCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:61642771 original size:22 final size:22
Alignment explanation
Indices: 61642731--61642772 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
61642721 GAATGTGCAT
*
61642731 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
61642753 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
61642773 TCAAAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:61650270 original size:40 final size:40
Alignment explanation
Indices: 61650191--61650352 Score: 200
Period size: 40 Copynumber: 4.0 Consensus size: 40
61650181 CGGATGATAA
* * * * *
61650191 CCGGACTAAGATCCGAAGGCATTCGTGTGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
61650231 CCGGGCTACGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
61650271 CCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGGTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
61650311 CCGGGCTAAGACACGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
61650351 CC
1 CC
61650353 AGCTAAATCC
Statistics
Matches: 102, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 2 0.02
40 98 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:61650329 original size:80 final size:79
Alignment explanation
Indices: 61650196--61650367 Score: 222
Period size: 80 Copynumber: 2.2 Consensus size: 79
61650186 GATAACCGGA
* * * * * *
61650196 CTAAGATCCGAAGGCATTCGTGTGAGTTGCTATATCCGGGCTACGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACACGAAGGCATTTATGCGA
61650261 G-TGATTATATCCGAG
66 GTTG-TTATATCC-AG
* * *
61650276 CTAAGACCCGAAGGCATTTGTGCGAGTTGGTATATCCGGGCTAAGACACGAAGGCATTTGTGCGA
1 CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACACGAAGGCATTTATGCGA
61650341 GTTGTTATATCCAG
66 GTTGTTATATCCAG
61650355 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
61650368 ATACTTGGGT
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.16
80 65 0.80
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACACGAAGGCATTTATGCGA
GTTGTTATATCCAG
Found at i:61650635 original size:22 final size:22
Alignment explanation
Indices: 61650595--61650636 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
61650585 GAATGTGCAT
*
61650595 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
61650617 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
61650637 TCAAAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:61654002 original size:17 final size:18
Alignment explanation
Indices: 61653960--61654008 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
61653950 AGTTGAAAAG
61653960 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
61653979 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
61653996 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
61654009 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:61654897 original size:40 final size:40
Alignment explanation
Indices: 61654831--61654981 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
61654821 AAATTGAATG
* * *
61654831 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
61654870 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
61654910 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
61654950 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
61654982 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:61654995 original size:40 final size:40
Alignment explanation
Indices: 61654867--61654997 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
61654857 TATGCTGGAA
* * * *
61654867 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
61654907 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
61654947 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
61654987 ATTATATCCGG
1 ATTATATCCGG
61654998 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:61660895 original size:28 final size:28
Alignment explanation
Indices: 61660852--61660933 Score: 141
Period size: 27 Copynumber: 3.0 Consensus size: 28
61660842 GTCACTAGAT
61660852 ACAGATA-TTGTGGCAGAGCCACCAGAA
1 ACAGATATTTGTGGCAGAGCCACCAGAA
*
61660879 ACAGATATTTGTGGCAGAGCCACCAGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAA
61660907 A-AGATATTTGTGGCAGAGCCACCAGAA
1 ACAGATATTTGTGGCAGAGCCACCAGAA
61660934 TGCTTCCTCC
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
27 32 0.62
28 20 0.38
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18
Consensus pattern (28 bp):
ACAGATATTTGTGGCAGAGCCACCAGAA
Found at i:61661053 original size:26 final size:27
Alignment explanation
Indices: 61661024--61661082 Score: 86
Period size: 26 Copynumber: 2.2 Consensus size: 27
61661014 TTATCCCTAA
*
61661024 GGGTATAATGGTAATTTTGCAT-C-TAG
1 GGGTATAATAGTAATTTT-CATACTTAG
61661050 GGGTATAATAGTAATTTTCATACTTAG
1 GGGTATAATAGTAATTTTCATACTTAG
61661077 GGGTAT
1 GGGTAT
61661083 TTTGGTAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 3 0.10
26 18 0.60
27 9 0.30
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.39
Consensus pattern (27 bp):
GGGTATAATAGTAATTTTCATACTTAG
Found at i:61664653 original size:27 final size:27
Alignment explanation
Indices: 61664604--61664706 Score: 102
Period size: 27 Copynumber: 3.8 Consensus size: 27
61664594 GGCTGCCAGA
* * *
61664604 ACAGATTTTGTGACAGAGTCACCAAAT
1 ACAGATATTGTGGCAGAGCCACCAAAT
*
61664631 ACAAATATTGTGGCAGAGCCACCAGAA-
1 ACAGATATTGTGGCAGAGCCACCA-AAT
* * *
61664658 ACAGATGTTTGTAGAAGAGCCACCAAAT
1 ACAGAT-ATTGTGGCAGAGCCACCAAAT
*
61664686 -CAGATATTTTGGCAGAGCCAC
1 ACAGATATTGTGGCAGAGCCAC
61664707 TAGATCGCTT
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
26 12 0.20
27 32 0.52
28 17 0.28
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (27 bp):
ACAGATATTGTGGCAGAGCCACCAAAT
Found at i:61664699 original size:54 final size:53
Alignment explanation
Indices: 61664599--61664706 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 53
61664589 AGCATGGCTG
*
61664599 CCAGAACAGATTTTGTGACAGAGTCACCAAATACAAATATTGTGGCAGAGCCA
1 CCAGAACAGATTTTGTGACAGAGCCACCAAATACAAATATTGTGGCAGAGCCA
* *
61664652 CCAGAAACAGATGTTTGTAGA-AGAGCCACCAAAT-CAGATATTTTGGCAGAGCCA
1 CCAG-AACAGAT-TTTGT-GACAGAGCCACCAAATACAAATATTGTGGCAGAGCCA
61664706 C
1 C
61664707 TAGATCGCTT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
53 4 0.08
54 26 0.53
55 17 0.35
56 2 0.04
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATTTTGTGACAGAGCCACCAAATACAAATATTGTGGCAGAGCCA
Found at i:61664885 original size:27 final size:26
Alignment explanation
Indices: 61664814--61664877 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
61664804 CAAAATTAAC
* *
61664814 CCTAGGGATATAATGGTAATTTTACA
1 CCTAGGGGTATAATAGTAATTTTACA
* *
61664840 CCTAGGGGTATAATGGTAATTTTCATA
1 CCTAGGGGTATAATAGTAATTTT-ACA
*
61664867 CTTAGGGGTAT
1 CCTAGGGGTAT
61664878 TTTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 22 0.65
27 12 0.35
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (26 bp):
CCTAGGGGTATAATAGTAATTTTACA
Found at i:61666991 original size:34 final size:34
Alignment explanation
Indices: 61666952--61667024 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
61666942 CCATCATTTG
*
61666952 AACTTATCACAGATTGAAATTTGTCTCACCATCA
1 AACTTACCACAGATTGAAATTTGTCTCACCATCA
* * * *
61666986 AACTTACCACATATTGAAATTTTTCTCACCTTCG
1 AACTTACCACAGATTGAAATTTGTCTCACCATCA
61667020 AACTT
1 AACTT
61667025 CTTAATTTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.36
Consensus pattern (34 bp):
AACTTACCACAGATTGAAATTTGTCTCACCATCA
Found at i:61668924 original size:29 final size:29
Alignment explanation
Indices: 61668892--61669025 Score: 130
Period size: 29 Copynumber: 4.6 Consensus size: 29
61668882 ATACCCTCCG
** * *
61668892 AGCTCGCACACCCAGTGCTGTATTTTTCC
1 AGCTCGCACACTTAGTGCTATATATTTCC
* * *
61668921 AGCTTGCACACATAGTG-TCATATTTTTCC
1 AGCTCGCACACTTAGTGCT-ATATATTTCC
61668950 AGCAT-GCACACTTAGTGCCT-TATATTTCC
1 AGC-TCGCACACTTAGTG-CTATATATTTCC
* *
61668979 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCTATATATTTCC
*
61669008 AGCACGCACACTTAGTGC
1 AGCTCGCACACTTAGTGC
61669026 CGATCTCGTC
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
28 2 0.02
29 87 0.96
30 1 0.01
31 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.31
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCTATATATTTCC
Found at i:61668959 original size:58 final size:58
Alignment explanation
Indices: 61668896--61669018 Score: 149
Period size: 58 Copynumber: 2.1 Consensus size: 58
61668886 CCTCCGAGCT
* ** * *
61668896 CGCACACCCAGTG-CTGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACCCAGTGCCT-TATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* ** *
61668954 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCTTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
61669012 CGCACAC
1 CGCACAC
61669019 TTAGTGCCGA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
58 52 0.96
59 2 0.04
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (58 bp):
CGCACACCCAGTGCCTTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:61669026 original size:29 final size:29
Alignment explanation
Indices: 61668916--61669026 Score: 159
Period size: 29 Copynumber: 3.8 Consensus size: 29
61668906 GTGCTGTATT
** * * *
61668916 TTTCCAGCTTGCACACATAGTGTCATATT
1 TTTCCAGCACGCACACTTAGTGCCATATA
* *
61668945 TTTCCAGCATGCACACTTAGTGCCTTATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
61668974 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
61669003 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCACGCACACTTAGTGCC
61669027 GATCTCGTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:61671298 original size:31 final size:32
Alignment explanation
Indices: 61671254--61671315 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
61671244 TGCAAGCATT
* *
61671254 ACAAAACCTATATA-CATATGTATTATATAAA
1 ACAAAACCCATATAGCATATATATTATATAAA
*
61671285 ACAAGACCCATATATGCATATATATTATATA
1 ACAAAACCCATATA-GCATATATATTATATA
61671316 TAATCAAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 12 0.46
33 14 0.54
ACGTcount: A:0.48, C:0.15, G:0.05, T:0.32
Consensus pattern (32 bp):
ACAAAACCCATATAGCATATATATTATATAAA
Found at i:61676631 original size:57 final size:58
Alignment explanation
Indices: 61676564--61676682 Score: 147
Period size: 57 Copynumber: 2.1 Consensus size: 58
61676554 GTGAGCATGA
*
61676564 ATAT-AATGTGATTTGGGACAGATGGGCCATAT-AA-ATGAGATTGGGCCTA-ATGGGCC
1 ATATGAATGTGAATTGGGACAGATGGGCCATATGAACATGA-ATTGGG-CTAGATGGGCC
* * * *
61676620 ATATGAATGTGAATTGGGCCTGATGGGCCATATGAACGTGAATTGGGGTAGATGGGCC
1 ATATGAATGTGAATTGGGACAGATGGGCCATATGAACATGAATTGGGCTAGATGGGCC
61676678 ATATG
1 ATATG
61676683 CAGGTATGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
56 4 0.07
57 27 0.50
58 20 0.37
59 3 0.06
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.27
Consensus pattern (58 bp):
ATATGAATGTGAATTGGGACAGATGGGCCATATGAACATGAATTGGGCTAGATGGGCC
Found at i:61676645 original size:29 final size:29
Alignment explanation
Indices: 61676564--61676682 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
61676554 GTGAGCATGA
* * *
61676564 ATAT-AATGTGATTTGGGACAGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
61676592 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
61676620 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
61676649 ATATGAACGTGAATTGGG-GTAGATGGGCC
1 ATATGAATGTGAATTGGGCCT-GATGGGCC
61676678 ATATG
1 ATATG
61676683 CAGGTATGTA
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
28 27 0.35
29 51 0.65
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:61687944 original size:40 final size:40
Alignment explanation
Indices: 61687727--61687932 Score: 281
Period size: 40 Copynumber: 5.2 Consensus size: 40
61687717 CGGAATACAA
* * *
61687727 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
*
61687767 CCGAATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
61687807 CCAGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
61687847 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
61687887 CCGGATGTAGTC-ACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATTTA-ACGACTTGCACGAA-TGCCTTCGGGTCTTAGC
61687927 CCGGAT
1 CCGGAT
61687933 ATAATTACTA
Statistics
Matches: 149, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.01
40 146 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:61687957 original size:120 final size:120
Alignment explanation
Indices: 61687727--61687974 Score: 302
Period size: 120 Copynumber: 2.1 Consensus size: 120
61687717 CGGAATACAA
* *
61687727 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGCCCGAATTTAACGACTTGCACGAATG
1 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGCCCGAATGTAACGACTAGCACGAATG
* * * * *
61687792 CCTTCGGGTCTTAGCCCAGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGC
66 CCTTCGGGTCTTAACCCAGATATAACAACTAGCACAAATGCCTTCAGGACTTAGC
* * * * *
61687847 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCAC-AAT
1 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGCCCGAATGTA-ACGACTAGCACGAA-
* ** ** *
61687910 TGCCTTCGGGTCTTAACCCGGATATAATTACTAGCTTAAATGTCTTCAGGACTTAGC
64 TGCCTTCGGGTCTTAACCCAGATATAACAACTAGCACAAATGCCTTCAGGACTTAGC
61687967 CCGGATAT
1 CCGGATAT
61687975 CATTTAATTA
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
119 2 0.02
120 104 0.97
121 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (120 bp):
CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGCCCGAATGTAACGACTAGCACGAATG
CCTTCGGGTCTTAACCCAGATATAACAACTAGCACAAATGCCTTCAGGACTTAGC
Found at i:61690850 original size:30 final size:30
Alignment explanation
Indices: 61690816--61690873 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
61690806 TTTGAGCTTT
61690816 GGGGCAAAAGT-GTAAATATGCAAAAGTTTA
1 GGGGCAAAA-TCGTAAATATGCAAAAGTTTA
* *
61690846 GGGGCAAAATCGTAATTTTGCAAAAGTT
1 GGGGCAAAATCGTAAATATGCAAAAGTT
61690874 AGAGTTATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (30 bp):
GGGGCAAAATCGTAAATATGCAAAAGTTTA
Found at i:61693759 original size:17 final size:17
Alignment explanation
Indices: 61693739--61693778 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
61693729 ATGGCCTAAA
61693739 GGGCCCGATGGGCTGTT
1 GGGCCCGATGGGCTGTT
61693756 GGGCCCGATGGGCTGTT
1 GGGCCCGATGGGCTGTT
61693773 GGGCCC
1 GGGCCC
61693779 ATATTAGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.05, C:0.28, G:0.47, T:0.20
Consensus pattern (17 bp):
GGGCCCGATGGGCTGTT
Found at i:61693919 original size:29 final size:29
Alignment explanation
Indices: 61693858--61693984 Score: 152
Period size: 29 Copynumber: 4.4 Consensus size: 29
61693848 ATTTGGGTTG
* * *
61693858 GATGGGCCATATAAATG-GGATTGGACCT
1 GATGGGCCATATGAATGTGAATTGGGCCT
* *
61693886 AATGGGCCATATGAACGTGAATTGGGCCT
1 GATGGGCCATATGAATGTGAATTGGGCCT
61693915 GATGGGCCATATGAATGTGAATTGGGCCT
1 GATGGGCCATATGAATGTGAATTGGGCCT
** *
61693944 GATGGGCCATACAAATGAG-ATTGGGCCT
1 GATGGGCCATATGAATGTGAATTGGGCCT
61693972 -AGTGGGCCATATG
1 GA-TGGGCCATATG
61693985 CAGGTATGTA
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
27 1 0.01
28 32 0.38
29 52 0.61
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GATGGGCCATATGAATGTGAATTGGGCCT
Found at i:61693967 original size:57 final size:57
Alignment explanation
Indices: 61693858--61693984 Score: 152
Period size: 57 Copynumber: 2.2 Consensus size: 57
61693848 ATTTGGGTTG
* * * *
61693858 GATGGGCCATATAAATGGGATTGGACCTAATGGGCCATATGAACGTGAATTGGGCCT
1 GATGGGCCATATGAATGGAATTGGACCTAATGGGCCATATCAACATGAATTGGGCCT
* *
61693915 GATGGGCCATATGAATGTGAATTGGGCCTGATGGGCCATA-CAA-ATGAGATTGGGCCT
1 GATGGGCCATATGAATG-GAATTGGACCTAATGGGCCATATCAACATGA-ATTGGGCCT
61693972 -AGTGGGCCATATG
1 GA-TGGGCCATATG
61693985 CAGGTATGTA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
56 4 0.07
57 38 0.62
58 19 0.31
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (57 bp):
GATGGGCCATATGAATGGAATTGGACCTAATGGGCCATATCAACATGAATTGGGCCT
Found at i:61702314 original size:47 final size:47
Alignment explanation
Indices: 61702254--61702510 Score: 206
Period size: 47 Copynumber: 5.5 Consensus size: 47
61702244 TCCATAAGTG
* *
61702254 AACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACA
* * * *
61702301 AACTCGGACTCAACTCAATGAGTTTGG--G-C-A-TTCGCATC-CATAA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTCA-CA
* * *
61702344 GTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTACTTACATCTCACA
1 ---AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACA
* * * * * ** *
61702394 AACTCGGACTCAACTCAACGAGTTCGGGTG-TTCGCATCCAT-AAACG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCACA
* * *
61702440 AACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACGTCTCACG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACA
**
61702487 AACTTAGACTCAACTCAACGAGTT
1 AACTCGGACTCAACTCAACGAGTT
61702511 TGGACGTTCG
Statistics
Matches: 163, Mismatches: 33, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
42 4 0.02
43 6 0.04
44 1 0.01
45 1 0.01
46 59 0.36
47 80 0.49
48 1 0.01
49 1 0.01
50 6 0.04
51 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACA
Found at i:61702322 original size:93 final size:93
Alignment explanation
Indices: 61702206--61702564 Score: 477
Period size: 93 Copynumber: 3.9 Consensus size: 93
61702196 AGCCCATAAG
* * * * *
61702206 CAAACTCGGTCTCAACTTAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CAAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
61702271 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
61702299 CAAACTCGGACTCAACTCAATGAGTTTGGGCATTCGCATCCATAAGTGAACTC-AGACTCAACTC
1 CAAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGA-ACTCAACTC
* *
61702363 AATGAGTTCGGATGCCTACTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* ** *
61702392 CAAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCATAAACGAACTCGGACTCAACTCA
1 CAAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
* *
61702457 ATGAGTTCGGATGCCTAGTTACGTCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* ** * * * *
61702485 CGAACTTAGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CAAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
61702550 ACAAGTTCGGATGCC
66 ACGAGTTCGGATGCC
61702565 CAAATATCTG
Statistics
Matches: 235, Mismatches: 29, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
92 1 0.00
93 234 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (93 bp):
CAAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61702358 original size:46 final size:45
Alignment explanation
Indices: 61702199--61702466 Score: 170
Period size: 46 Copynumber: 5.8 Consensus size: 45
61702189 TGTAACCAGC
* * * * **
61702199 CCATAAGCAAACTCGGTCTCAACTTAATGAGCTCGGGTGTTCGCAT
1 CCATAA-CGAACTCGGACTCAACTCAATGAGTTCGGGCATTCGCAT
* * * * *
61702245 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAA-CGAACTCGGACTCAACTCAATGAGTTCGG--G-C-A-TTCGCAT
* * *
61702295 -C-TCACAAACTCGGACTCAACTCAATGAGTTTGGGCATTCGCAT
1 CCATAACGAACTCGGACTCAACTCAATGAGTTCGGGCATTCGCAT
* * *
61702338 CCATAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTACTT-ACAT
1 CCATAA-CGAACTCGGACTCAACTCAATGAGTTCGG--G-C-A-TTCGCAT
* * * **
61702388 -C-TCACAAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
1 CCATAACGAACTCGGACTCAACTCAATGAGTTCGGGCATTCGCAT
61702431 CCATAAACGAACTCGGACTCAACTCAATGAGTTCGG
1 CCAT-AACGAACTCGGACTCAACTCAATGAGTTCGG
61702467 ATGCCTAGTT
Statistics
Matches: 170, Mismatches: 34, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
42 4 0.02
43 7 0.04
44 3 0.02
45 5 0.03
46 83 0.49
47 48 0.28
48 6 0.04
49 3 0.02
50 7 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (45 bp):
CCATAACGAACTCGGACTCAACTCAATGAGTTCGGGCATTCGCAT
Found at i:61702523 original size:186 final size:186
Alignment explanation
Indices: 61702206--61702564 Score: 538
Period size: 186 Copynumber: 1.9 Consensus size: 186
61702196 AGCCCATAAG
* * * **
61702206 CAAACTCGGTCTCAACTTAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CAAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAACGAACTCGAACTCAACTCA
* * *
61702271 ACGAGCTCGGATGCCTAGTTACATCTCACAAACTCGGACTCAACTCAATGAGTTTGGGCATTCGC
66 ACGAGCTCGGATGCCTAGTTACATCTCACAAACTCAGACTCAACTCAACGAGTTTGGACATTCGC
**
61702336 ATCCATAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTACTTACATCTCA
131 ATCCATAAGTGAACTCAGACTCAACTCAACAAGTTCGGATGCCTACTTACATCTCA
* *
61702392 CAAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCATAAACGAACTCGGACTCAACTCA
1 CAAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAACGAACTCGAACTCAACTCA
* * * * * *
61702457 ATGAGTTCGGATGCCTAGTTACGTCTCACGAACTTAGACTCAACTCAACGAGTTTGGACGTTCGC
66 ACGAGCTCGGATGCCTAGTTACATCTCACAAACTCAGACTCAACTCAACGAGTTTGGACATTCGC
**
61702522 ATCCATAAGTGAACTTGGACTCAACTCAACAAGTTCGGATGCC
131 ATCCATAAGTGAACTCAGACTCAACTCAACAAGTTCGGATGCC
61702565 CAAATATCTG
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
186 153 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (186 bp):
CAAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAACGAACTCGAACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCACAAACTCAGACTCAACTCAACGAGTTTGGACATTCGC
ATCCATAAGTGAACTCAGACTCAACTCAACAAGTTCGGATGCCTACTTACATCTCA
Found at i:61702549 original size:46 final size:45
Alignment explanation
Indices: 61702199--61702560 Score: 166
Period size: 46 Copynumber: 7.8 Consensus size: 45
61702189 TGTAACCAGC
* * * * * **
61702199 CCATAAGCAAACTCGGTCTCAACTTAATGAGCTCGGGTGTTCGCAT
1 CCATAA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * *
61702245 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAA-CGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * * * * *
61702295 -C-TCACAAACTCGGACTCAACTCAATGAGTTTGGGCATTCGCAT
1 CCATAACGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * **
61702338 CCATAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTACTTACAT
1 CCATAA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CGT--TCGCAT
* * **
61702388 -C-TCACAAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
1 CCATAACGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
61702431 CCATAAACGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACG--T
1 CCAT-AACGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTT-CGCAT
* ** *
61702481 -C-TCACGAACTTAGACTCAACTCAACGAGTTTGGACGTTCGCAT
1 CCATAACGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
61702524 CCATAAGTGAACTTGGACTCAACTCAACAAGTTCGGA
1 CCATAA-CGAACTCGGACTCAACTCAACGAGTTCGGA
61702561 TGCCCAAATA
Statistics
Matches: 236, Mismatches: 53, Indels: 54
0.69 0.15 0.16
Matches are distributed among these distances:
41 2 0.01
42 5 0.02
43 8 0.03
44 5 0.02
45 6 0.03
46 109 0.46
47 75 0.32
48 7 0.03
49 3 0.01
50 8 0.03
51 6 0.03
52 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (45 bp):
CCATAACGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:61705645 original size:49 final size:49
Alignment explanation
Indices: 61705586--61705782 Score: 241
Period size: 50 Copynumber: 4.0 Consensus size: 49
61705576 ATAGCCAAAG
* *
61705586 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
61705635 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
** * * * *
61705685 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * *
61705735 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
61705783 TCACAATAGA
Statistics
Matches: 126, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 42 0.33
50 46 0.37
51 38 0.30
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:61705783 original size:101 final size:99
Alignment explanation
Indices: 61705600--61705783 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 99
61705590 CTGGTACGCA
* *
61705600 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
61705665 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * *
61705699 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
*
61705764 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
61705784 CACAATAGAT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 43 0.57
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:61709711 original size:34 final size:33
Alignment explanation
Indices: 61709651--61709769 Score: 141
Period size: 34 Copynumber: 3.6 Consensus size: 33
61709641 TTTCAGTATT
* *
61709651 AGTTAGGCCT-AGCCTATTTCAGTAACAGTAGC
1 AGTTGGGCCTGAGCCCATTTCAGTAACAGTAGC
* * *
61709683 AGTCTGGGCCTGAGCCCATTTAAATAACAGTAGT
1 AGT-TGGGCCTGAGCCCATTTCAGTAACAGTAGC
*
61709717 AGTTTGGGCATGAGCCCATTTCAGTAACAGTAGC
1 AG-TTGGGCCTGAGCCCATTTCAGTAACAGTAGC
* *
61709751 AGTAGGGCCTAAGCCCATT
1 AGTTGGGCCTGAGCCCATT
61709770 AACATATCAG
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
32 3 0.04
33 20 0.28
34 48 0.67
35 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (33 bp):
AGTTGGGCCTGAGCCCATTTCAGTAACAGTAGC
Found at i:61727906 original size:27 final size:27
Alignment explanation
Indices: 61727869--61727992 Score: 162
Period size: 27 Copynumber: 4.6 Consensus size: 27
61727859 CTCAATTTAC
61727869 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
61727896 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
61727923 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
*
61727950 AAATTACCAAAATA-CCATGGTTTGA-A
1 AAATTACCAAAATACCCTTGGTTT-ATA
*
61727976 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
61727993 CTGTAGGGTA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.25
27 62 0.75
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTATA
Found at i:61727936 original size:54 final size:53
Alignment explanation
Indices: 61727869--61727992 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 53
61727859 CTCAATTTAC
* * *
61727869 AAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATA-CCATGGTTTGAA
* *
61727923 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCATGGTTTGAA
1 AAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCATGGTTTGAA
61727976 AAATTACTAAAATACCC
1 AAATTACTAAAATACCC
61727993 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
53 27 0.42
54 38 0.58
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (53 bp):
AAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCATGGTTTGAA
Found at i:61728005 original size:53 final size:53
Alignment explanation
Indices: 61727869--61728018 Score: 151
Period size: 53 Copynumber: 2.8 Consensus size: 53
61727859 CTCAATTTAC
* ** * * *
61727869 AAATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATA-CCATGGTTTGAA
* **
61727923 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCATGGTTTGAA
1 AAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAA
* **
61727976 AAATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AAATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
61728019 CTTGTGGGGT
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 3 0.04
53 43 0.51
54 37 0.44
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAA
Found at i:61728009 original size:27 final size:27
Alignment explanation
Indices: 61727975--61728036 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
61727965 CATGGTTTGA
61727975 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
61728002 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
61728029 AAAATTAC
1 AAAATTAC
61728037 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:61728032 original size:80 final size:81
Alignment explanation
Indices: 61727869--61728038 Score: 204
Period size: 80 Copynumber: 2.1 Consensus size: 81
61727859 CTCAATTTAC
* **
61727869 AAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAA
**
61727934 ATACCCTTTGTTTATA
66 ATACCCTTTGTGGATA
* * *
61727950 AAATTACCAAAATA-CCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTG
1 AAATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTA
*
61728012 AAATACCC-TTGTGGGGTA
64 AAATACCCTTTGT-GGATA
61728030 AAATTACCA
1 AAATTACCA
61728039 TTTTGCCCCT
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 6 0.08
80 56 0.73
81 15 0.19
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAA
ATACCCTTTGTGGATA
Found at i:61728784 original size:27 final size:27
Alignment explanation
Indices: 61728691--61728774 Score: 150
Period size: 27 Copynumber: 3.1 Consensus size: 27
61728681 AGCGTAGATC
61728691 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
61728718 ACTGAAATTACCCCTAAAGAGCAAAATT
1 AC-GAAATTACCCCTAAAGAGCAAAATT
*
61728746 ACGAAATTACCCCTAAATAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
61728773 AC
1 AC
61728775 CAATATACCC
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
27 28 0.51
28 27 0.49
ACGTcount: A:0.48, C:0.23, G:0.10, T:0.20
Consensus pattern (27 bp):
ACGAAATTACCCCTAAAGAGCAAAATT
Found at i:61732101 original size:27 final size:27
Alignment explanation
Indices: 61732049--61732173 Score: 139
Period size: 27 Copynumber: 4.7 Consensus size: 27
61732039 CAATTTACAG
*
61732049 AATTACC-AAATA-CCTTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTATAA
* *
61732074 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTATAA
* * *
61732101 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCCTGGTTTATAA
**
61732128 AATTACCAAAATACCAATGGTTTGA-AA
1 AATTACCAAAATACCCCTGGTTT-ATAA
*
61732155 AATTACTAAAATACCCCTG
1 AATTACCAAAATACCCCTG
61732174 TAGGGTAAAA
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
25 6 0.07
26 5 0.06
27 70 0.85
28 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTATAA
Found at i:61732130 original size:54 final size:54
Alignment explanation
Indices: 61732056--61732170 Score: 178
Period size: 54 Copynumber: 2.1 Consensus size: 54
61732046 CAGAATTACC
** *
61732056 AAATA-CCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTA
1 AAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAAAATTACTA
* *
61732109 AAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAAAATTACTA
1 AAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAAAATTACTA
61732163 AAATACCC
1 AAATACCC
61732171 CTGTAGGGTA
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 5 0.09
54 51 0.91
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAAAATTACTA
Found at i:61732172 original size:81 final size:79
Alignment explanation
Indices: 61732049--61732199 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 79
61732039 CAATTTACAG
* **
61732049 AATTACCAAATACCTTGGTTTATAAAATCACCAAAATACCCCTGGT-TTGTAAAATTACTAAAAT
1 AATTACCAAATACCATGGTTTATAAAATCACCAAAATACCCCT-GTAGGGTAAAATTACTAAAAT
61732113 ACCCTTTGTTTATAA
65 ACCCTTTGTTTATAA
* * *
61732128 AATTACCAAAATACCAATGGTTTGA-AAAATTACTAAAATACCCCTGTAGGGTAAAATTACTGAA
1 AATTACC-AAATACC-ATGGTTT-ATAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAA
61732192 ATACCCTT
63 ATACCCTT
61732200 GTGGGGTAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 7 0.11
80 9 0.15
81 45 0.73
82 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (79 bp):
AATTACCAAATACCATGGTTTATAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAATA
CCCTTTGTTTATAA
Found at i:61732183 original size:27 final size:27
Alignment explanation
Indices: 61732153--61732214 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
61732143 AATGGTTTGA
61732153 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
61732180 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
61732207 AAAATTAC
1 AAAATTAC
61732215 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:61732183 original size:54 final size:54
Alignment explanation
Indices: 61732070--61732196 Score: 148
Period size: 54 Copynumber: 2.4 Consensus size: 54
61732060 ACCTTGGTTT
* ** * * **
61732070 ATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTT
1 ATAAAATTACCAAAATACCAATGGTTTGAAAAATTACTAAAATACCCTCTGTGG
61732124 ATAAAATTACCAAAATACCAATGGTTTGAAAAATTACTAAAATACCC-CTGTAGG
1 ATAAAATTACCAAAATACCAATGGTTTGAAAAATTACTAAAATACCCTCTGT-GG
* **
61732178 GTAAAATTACTGAAATACC
1 ATAAAATTACCAAAATACC
61732197 CTTGTGGGGT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
53 3 0.05
54 59 0.95
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.29
Consensus pattern (54 bp):
ATAAAATTACCAAAATACCAATGGTTTGAAAAATTACTAAAATACCCTCTGTGG
Found at i:61732210 original size:81 final size:80
Alignment explanation
Indices: 61732049--61732216 Score: 191
Period size: 81 Copynumber: 2.1 Consensus size: 80
61732039 CAATTTACAG
* **
61732049 AATTACC-AAATACCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAAT
1 AATTACCAAAATACCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAAT
**
61732113 ACCCTTTGTTTATAA
66 ACCCTTTGTGGATAA
* * *
61732128 AATTACCAAAATACCAATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACC-ATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
*
61732191 AATACCC-TTGTGGGGTAA
63 AATACCCTTTGT-GGATAA
61732209 AATTACCA
1 AATTACCA
61732217 TTTTGCCCCT
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
79 7 0.09
80 13 0.17
81 54 0.72
82 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (80 bp):
AATTACCAAAATACCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAAT
ACCCTTTGTGGATAA
Found at i:61732908 original size:28 final size:28
Alignment explanation
Indices: 61732868--61732963 Score: 142
Period size: 28 Copynumber: 3.5 Consensus size: 28
61732858 TGTAGTAGCA
*
61732868 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACC
61732896 GAAATTACCCCTAAAGAGCAAAATTACC
1 GAAATTACCCCTAAAGAGCAAAATTACC
* *
61732924 GAAATTACCCCTAAATAGGAAAATTACC
1 GAAATTACCCCTAAAGAGCAAAATTACC
61732952 --AATATACCCCTA
1 GAAAT-TACCCCTA
61732964 GGGTTTAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 53 0.83
ACGTcount: A:0.46, C:0.24, G:0.09, T:0.21
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACC
Found at i:61738583 original size:39 final size:40
Alignment explanation
Indices: 61738494--61738675 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 40
61738484 GACTCGCTCA
* ** ** *
61738494 AATGCCTTCGAGACGAAGCCCGG-TTATAGCGACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCACG
* *
61738534 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC-
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* *
61738573 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* * * *
61738612 AATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCACG
*
61738652 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
61738676 CATCATTCGA
Statistics
Matches: 116, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 24 0.21
39 21 0.18
40 62 0.53
41 9 0.08
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
Found at i:61738618 original size:78 final size:80
Alignment explanation
Indices: 61738525--61738675 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
61738515 GGTTATAGCG
* * * *
61738525 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
61738587 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
61738603 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
61738668 AGCCCGGA
66 AGCCCGGA
61738676 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:61738912 original size:11 final size:11
Alignment explanation
Indices: 61738896--61738924 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
61738886 GTCGAACGAT
61738896 TTCGACGGCTA
1 TTCGACGGCTA
61738907 TTCGACGGCTA
1 TTCGACGGCTA
61738918 TTCGACG
1 TTCGACG
61738925 ACTTTTTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.28
Consensus pattern (11 bp):
TTCGACGGCTA
Found at i:61740708 original size:31 final size:31
Alignment explanation
Indices: 61740670--61740746 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
61740660 TAACGGTTAT
61740670 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
* *
61740701 TGGGCCGAACCCTTTTCATAAATCATATCAT
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
61740732 TGGGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
61740747 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAC
Found at i:61740817 original size:42 final size:42
Alignment explanation
Indices: 61740770--61740861 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
61740760 TGGCCCTTAG
* ** *
61740770 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
61740812 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
61740854 GCCAATTT
1 GCCCATTT
61740862 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Done.