Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 202 of 410
Found at i:61741076 original size:26 final size:26
Alignment explanation
Indices: 61741006--61741180 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
61740996 CCTCTTTAAT
61741006 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
61741031 AACTGGGGTA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
61741056 AACTGCGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
61741082 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
61741108 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
61741134 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
61741160 AACTGGGGCACAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
61741181 GCACTTCCTC
Statistics
Matches: 136, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
25 30 0.22
26 106 0.78
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:61741144 original size:78 final size:76
Alignment explanation
Indices: 61741006--61741180 Score: 305
Period size: 78 Copynumber: 2.3 Consensus size: 76
61740996 CCTCTTTAAT
*
61741006 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGTAAAGCCCTTTTCAATAAACTGCGGCATAAGC
1 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTGCGGCATAAGC
61741071 CCTTTTCGGTA
66 CCTTTTCGGTA
*
61741082 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAA
1 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAACTGCGGCATAA
61741147 GCCCTTTTCGGTA
64 GCCCTTTTCGGTA
61741160 AACTGGGGCACAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
61741181 GCACTTCCTC
Statistics
Matches: 94, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
76 10 0.11
77 24 0.26
78 60 0.64
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (76 bp):
AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTGCGGCATAAGC
CCTTTTCGGTA
Found at i:61742054 original size:27 final size:27
Alignment explanation
Indices: 61741992--61742069 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
61741982 GGGCATATTT
61741992 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
61742019 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
61742046 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
61742070 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:61742140 original size:27 final size:27
Alignment explanation
Indices: 61742110--61742195 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
61742100 GTAAATCTAC
*
61742110 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAAGGTATTTCAGTAATTTTGT
*
61742137 AAACCAAAGGTATTCCTA-TAATTTT-T
1 AAACCAAAGGTATTTC-AGTAATTTTGT
* *
61742163 AGAAAGTCAAAGGTATTTCTGTAATTTTGT
1 --AAA-CCAAAGGTATTTCAGTAATTTTGT
61742193 AAA
1 AAA
61742196 TTAGGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.02
27 21 0.44
28 7 0.15
29 18 0.38
30 1 0.02
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (27 bp):
AAACCAAAGGTATTTCAGTAATTTTGT
Found at i:61742213 original size:27 final size:27
Alignment explanation
Indices: 61742174--61742292 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
61742164 GAAAGTCAAA
** *
61742174 GGTATTTCT-GTAATTTTGTAAATTAGG
1 GGTATTT-TGGTAATTTTACAAACTAGG
*
61742201 GGTATTTTGGTAATTTTACAAA-TTGAG
1 GGTATTTTGGTAATTTTACAAACTAG-G
* * * * *
61742228 GGTATTTCGATAA-TTTACGAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAGG
*
61742254 GGTATTTTGGTAATTTTACAAACTAAG
1 GGTATTTTGGTAATTTTACAAACTAGG
61742281 GGTATTTTGGTA
1 GGTATTTTGGTA
61742293 TTTCTACCCT
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
26 21 0.29
27 52 0.71
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.43
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:61742346 original size:26 final size:25
Alignment explanation
Indices: 61742315--61742401 Score: 111
Period size: 26 Copynumber: 3.3 Consensus size: 25
61742305 AGGGGTATTT
61742315 CAGTAATTTCACAATCAAGGGTAAAA
1 CAGTAATTTCA-AATCAAGGGTAAAA
* *
61742341 CGGTAATTTCAGAATCGAGGGTAAAA
1 CAGTAATTTCA-AATCAAGGGTAAAA
*
61742367 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CAGTAATT-T-CAAATCAAGGGTAAAA
61742394 CAGTAATT
1 CAGTAATT
61742402 CTATAAATCG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 30 0.57
27 22 0.42
28 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.25
Consensus pattern (25 bp):
CAGTAATTTCAAATCAAGGGTAAAA
Found at i:61742391 original size:27 final size:26
Alignment explanation
Indices: 61742327--61742417 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 26
61742317 GTAATTTCAC
* *
61742327 AATCAAGGGTAAAACGGTAATT-TCA
1 AATCAAGGGTAAAACAGTAATTCTTA
*
61742352 GAATCGAGGGTAAAACAGTAATTCTGTA
1 -AATCAAGGGTAAAACAGTAATTCT-TA
61742380 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCT-TA
*
61742407 AATCGAGGGTA
1 AATCAAGGGTA
61742418 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 20 0.35
27 36 0.63
28 1 0.02
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (26 bp):
AATCAAGGGTAAAACAGTAATTCTTA
Found at i:61755084 original size:29 final size:29
Alignment explanation
Indices: 61755051--61755181 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
61755041 GTGACGAGAT
*
61755051 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
61755080 TGGCACTAAGTGTGCATGCTGG-AATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
61755108 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
61755137 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
61755166 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61755182 AAATCGAGTA
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
28 27 0.31
29 59 0.69
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:61755114 original size:28 final size:29
Alignment explanation
Indices: 61755051--61755122 Score: 128
Period size: 28 Copynumber: 2.5 Consensus size: 29
61755041 GTGACGAGAT
*
61755051 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
61755080 TGGCACTAAGTGTGCATGCTGG-AATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
61755108 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
61755123 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 21 0.50
29 21 0.50
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:61761160 original size:40 final size:40
Alignment explanation
Indices: 61761115--61761282 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61761105 CGGAATATAA
61761115 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61761155 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61761195 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
61761235 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61761275 CCGGATAT
1 CCGGATAT
61761283 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61768962 original size:27 final size:27
Alignment explanation
Indices: 61768932--61769201 Score: 342
Period size: 27 Copynumber: 10.0 Consensus size: 27
61768922 CAAAATGATT
*
61768932 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
61768959 GAAATACCCCTGTACGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
61768986 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
61769013 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
61769040 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
** * * **
61769067 GAAATACAACTATAGGGTATAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
61769094 GAAATACCCCTATAAGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
61769121 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
61769148 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * * *
61769175 GAGATATCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
61769202 ATTTTGCCCC
Statistics
Matches: 210, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 210 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:61769842 original size:27 final size:26
Alignment explanation
Indices: 61769812--61769915 Score: 127
Period size: 27 Copynumber: 3.9 Consensus size: 26
61769802 ATTCTATTAA
* *
61769812 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
*
61769839 GTGGCTATGCCATAAATATCTGTTCTG
1 GTGGCTATGCCA-CAATATCTGTTCTG
*
61769866 GTGGCTATGCCACAAATACCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* *
61769893 GTGGCTCTGTCACAATATCTGTT
1 GTGGCTATGCCACAATATCTGTT
61769916 TCGGCAGCCA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 9 0.13
27 51 0.76
28 7 0.10
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:61770045 original size:6 final size:6
Alignment explanation
Indices: 61770036--61770126 Score: 105
Period size: 6 Copynumber: 14.8 Consensus size: 6
61770026 TTGCATTCAT
* * *
61770036 ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
61770085 ATTCTG ATTCTG -TTACCTG ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCT
61770127 CATTTTAATT
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
5 3 0.04
6 62 0.85
7 5 0.07
8 3 0.04
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:61770072 original size:19 final size:19
Alignment explanation
Indices: 61770045--61770115 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
61770035 TATTCTGATT
*
61770045 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTAAC
* *
61770064 CTAATTCTGATTC--TAATT
1 CTGATTCTGATTCTGTAA-C
*
61770082 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTAAC
61770101 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
61770116 ATTCTGATTC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.05
18 12 0.28
19 27 0.63
20 2 0.05
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.46
Consensus pattern (19 bp):
CTGATTCTGATTCTGTAAC
Found at i:61770086 original size:37 final size:37
Alignment explanation
Indices: 61770036--61770126 Score: 155
Period size: 37 Copynumber: 2.5 Consensus size: 37
61770026 TTGCATTCAT
61770036 ATTCTGATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGATTCTGTCACCTAATTCTG
* * *
61770073 ATTCTAATTCTGATTCTGATTCTGTTACCTGATTCTG
1 ATTCTGATTCTGATTCTGATTCTGTCACCTAATTCTG
61770110 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
61770127 CATTTTAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGATTCTGTCACCTAATTCTG
Found at i:61770137 original size:18 final size:18
Alignment explanation
Indices: 61770067--61770138 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
61770057 CTGTCACCTA
*
61770067 ATTCTGATTCTAATTCTG
1 ATTCTCATTCTAATTCTG
* *
61770085 ATTCTGATTCT-GTTACCTG
1 ATTCTCATTCTAATT--CTG
* *
61770104 ATTCTGATTCTGATTCTG
1 ATTCTCATTCTAATTCTG
*
61770122 ATTCTCATTTTAATTCT
1 ATTCTCATTCTAATTCT
61770139 AGTTCTGATA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
17 2 0.04
18 28 0.61
19 14 0.30
20 2 0.04
ACGTcount: A:0.19, C:0.18, G:0.11, T:0.51
Consensus pattern (18 bp):
ATTCTCATTCTAATTCTG
Found at i:61772208 original size:27 final size:27
Alignment explanation
Indices: 61772176--61772582 Score: 559
Period size: 27 Copynumber: 15.1 Consensus size: 27
61772166 TTACAAAATG
61772176 ACTGAAATACCCCTGTAGGGTAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
*
61772203 ATTGAAATACCCCTGTAGGGTAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
* *
61772230 ACCGAAATGCCCCTGTAGGGTAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
*
61772257 ATTGAAATACCCCTGTAGGGTAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
* *
61772284 ACTGAAATACCCCTGTACGGTAAAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
* * *
61772311 ACCGAAATACTCCTGTAGGATAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
*
61772338 ACTGAAATACCCCTGTATGGTAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
* *
61772365 ACTGAAATAACCTTGTAGGGTAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
61772392 A-TCGAAATACCCCTGTAGGGTAGAATT
1 ACT-GAAATACCCCTGTAGGGTAGAATT
* *
61772419 ACCGAAATACCACTGTAGGGTAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
*
61772446 ACTGAAATACCCCTGTAGGGTATAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
*
61772473 ATTGAAATACCCCTGTAGGGTAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
* *
61772500 ACTAAAATACCCTTGTAGGGTAGAATT
1 ACTGAAATACCCCTGTAGGGTAGAATT
*
61772527 A-TCAAAATACCCCTGTAGGGTAGAATT
1 ACT-GAAATACCCCTGTAGGGTAGAATT
* * * *
61772554 ACCGAGATACCCTTGT-GGGTTAAAATT
1 ACTGAAATACCCCTGTAGGG-TAGAATT
61772581 AC
1 AC
61772583 CATTTTGTCC
Statistics
Matches: 335, Mismatches: 40, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.01
27 330 0.99
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
ACTGAAATACCCCTGTAGGGTAGAATT
Found at i:61773022 original size:22 final size:23
Alignment explanation
Indices: 61772973--61773023 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
61772963 AATTATTCTG
*
61772973 ATTATGGCTTTGCGCCAACCTAC
1 ATTATGGCTCTGCGCCAACCTAC
*
61772996 A-TATGGCTCTGTGCCAACCTA-
1 ATTATGGCTCTGCGCCAACCTAC
61773017 ATTATGG
1 ATTATGG
61773024 TTGTGTCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (23 bp):
ATTATGGCTCTGCGCCAACCTAC
Found at i:61773034 original size:22 final size:22
Alignment explanation
Indices: 61772987--61773034 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
61772977 TGGCTTTGCG
*
61772987 CCAACCTACATATGGCTCTGTG
1 CCAACCTACATATGGCTCTGTC
* *
61773009 CCAACCTA-ATTATGGTTGTGTC
1 CCAACCTACA-TATGGCTCTGTC
61773031 CCAA
1 CCAA
61773035 ACGTATTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (22 bp):
CCAACCTACATATGGCTCTGTC
Found at i:61773250 original size:27 final size:27
Alignment explanation
Indices: 61773215--61773327 Score: 126
Period size: 27 Copynumber: 4.2 Consensus size: 27
61773205 CATTAACTAT
61773215 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTATGCCACAAATATCTG
61773242 TTCCT-GTGGCTATGCCACAAATA-CTTG
1 TT-CTGGTGGCTATGCCACAAATATC-TG
*
61773269 TTCTGGTGGCTCTGCCAC-AATATCTG
1 TTCTGGTGGCTATGCCACAAATATCTG
* * **
61773295 TATCTGGTGACTCTATCAC-AATATCTG
1 T-TCTGGTGGCTATGCCACAAATATCTG
61773322 TTCTGG
1 TTCTGG
61773328 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
26 15 0.19
27 60 0.78
28 2 0.03
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (27 bp):
TTCTGGTGGCTATGCCACAAATATCTG
Found at i:61773667 original size:17 final size:19
Alignment explanation
Indices: 61773625--61773668 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
61773615 ATGAAATTTT
*
61773625 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
61773644 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
61773662 AA-TATTA
1 AATTATTA
61773669 CTGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:61774748 original size:9 final size:10
Alignment explanation
Indices: 61774727--61774794 Score: 57
Period size: 10 Copynumber: 6.5 Consensus size: 10
61774717 GGATTCAGTT
61774727 TTTTCTTCTTC
1 TTTTC-TCTTC
61774738 TTTTC-CTTC
1 TTTTCTCTTC
*
61774747 TTTTCTTTTC
1 TTTTCTCTTC
*
61774757 TTTTCTTTTC
1 TTTTCTCTTC
* *
61774767 TCTTCATCTAC
1 TTTTC-TCTTC
61774778 TTTATCTTCTTC
1 TTT-TC-TCTTC
61774790 TTTTC
1 TTTTC
61774795 CTCCATAGCC
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
9 9 0.19
10 17 0.36
11 12 0.26
12 9 0.19
ACGTcount: A:0.04, C:0.26, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTCTCTTC
Found at i:61774754 original size:5 final size:5
Alignment explanation
Indices: 61774727--61774767 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
61774717 GGATTCAGTT
*
61774727 TTTTC TTCTTC TTTTC -CTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC T
61774768 CTTCATCTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 3 0.09
5 24 0.75
6 5 0.16
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTC
Found at i:61775871 original size:28 final size:27
Alignment explanation
Indices: 61775840--61775902 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
61775830 AATTACTAGA
* *
61775840 ATACCCCTAAGTATGGAAAATTACCATT
1 ATACCCCTAAG-ATGAAAAATGACCATT
*
61775868 ATACCCCT-AGGTGAAAAATGACCATT
1 ATACCCCTAAGATGAAAAATGACCATT
*
61775894 TTACCCCTA
1 ATACCCCTA
61775903 GGGTTAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 20 0.67
27 2 0.07
28 8 0.27
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGAAAAATGACCATT
Found at i:61778268 original size:17 final size:19
Alignment explanation
Indices: 61778226--61778269 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
61778216 ATGAAATTTT
*
61778226 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
61778245 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
61778263 AA-TATTA
1 AATTATTA
61778270 CTGTATGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:61781605 original size:20 final size:21
Alignment explanation
Indices: 61781580--61781647 Score: 77
Period size: 20 Copynumber: 3.2 Consensus size: 21
61781570 GGATTCAGTT
61781580 TTTTCTTCTACTTTTC-CTTC
1 TTTTCTTCTACTTTTCTCTTC
*
61781600 TTTTCTT-TTCTTTTCTCTTC
1 TTTTCTTCTACTTTTCTCTTC
* *
61781620 TCTTCATCTACTTTCTCTTCTTC
1 TTTTCTTCTACTTT-TC-TCTTC
61781643 TTTTC
1 TTTTC
61781648 CTCCATAGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
19 7 0.18
20 16 0.41
21 5 0.13
22 2 0.05
23 9 0.23
ACGTcount: A:0.04, C:0.29, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTCTTCTACTTTTCTCTTC
Found at i:61781612 original size:10 final size:10
Alignment explanation
Indices: 61781580--61781647 Score: 57
Period size: 10 Copynumber: 6.5 Consensus size: 10
61781570 GGATTCAGTT
*
61781580 TTTTCTTCTAC
1 TTTTC-TCTTC
61781591 TTTTC-CTTC
1 TTTTCTCTTC
*
61781600 TTTTCTTTTC
1 TTTTCTCTTC
61781610 TTTTCTCTTC
1 TTTTCTCTTC
* *
61781620 TCTTCATCTAC
1 TTTTC-TCTTC
61781631 TTTCTCTTCTTC
1 TTT-TC-TCTTC
61781643 TTTTC
1 TTTTC
61781648 CTCCATAGCC
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
9 8 0.17
10 16 0.35
11 13 0.28
12 9 0.20
ACGTcount: A:0.04, C:0.29, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTCTCTTC
Found at i:61784979 original size:27 final size:27
Alignment explanation
Indices: 61784949--61785138 Score: 281
Period size: 27 Copynumber: 7.0 Consensus size: 27
61784939 TTACAAAATG
61784949 ATTGAAATACCCCTGTAGGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
*
61784976 ATTGAAATACCCCTGTAAGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
** *
61785003 ACCGAAATATCCCTGTAGGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
* *
61785030 ACTGAAATACCCCTGTAGGGTATAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
61785057 ATTGAAATACCCCTGTAGGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
* * *
61785084 ACTGAAATACCCTTATAGGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
**
61785111 ATCAAAATACCCCTGTAGGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
61785138 A
1 A
61785139 CCAAGATACC
Statistics
Matches: 145, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (27 bp):
ATTGAAATACCCCTGTAGGGTAGAATT
Found at i:61785147 original size:27 final size:26
Alignment explanation
Indices: 61784953--61785168 Score: 227
Period size: 27 Copynumber: 8.0 Consensus size: 26
61784943 AAAATGATTG
**
61784953 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTA-CC
*
61784980 AAATACCCCTGTAAGGTAGAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
* *
61785006 GAAATATCCCTGTAGGGTAGAATTACTG
1 -AAATACCCCTGTAGGGTAGAATTAC-C
* **
61785034 AAATACCCCTGTAGGGTATAATTATTG
1 AAATACCCCTGTAGGGTAGAATTA-CC
*
61785061 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTAC-C
* * *
61785088 AAATACCCTTATAGGGTAGAATTATCA
1 AAATACCCCTGTAGGGTAGAATTA-CC
61785115 AAATACCCCTGTAGGGTAGAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
* *
61785141 AAGATACCCTTGT-GGGTTAAAATTACC
1 AA-ATACCCCTGTAGGG-TAGAATTACC
61785168 A
1 A
61785169 TTTTGCCCCT
Statistics
Matches: 163, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.04
27 156 0.96
28 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (26 bp):
AAATACCCCTGTAGGGTAGAATTACC
Found at i:61785607 original size:22 final size:22
Alignment explanation
Indices: 61785555--61785619 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
61785545 GCCAATTATT
* *
61785555 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
61785577 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
61785599 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
61785620 ACATATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:61785827 original size:28 final size:27
Alignment explanation
Indices: 61785777--61785910 Score: 130
Period size: 27 Copynumber: 5.0 Consensus size: 27
61785767 TATTCTGTTA
* *
61785777 AGTGGCTTTGCCA-AATTATCTGTTTCT
1 AGTGGCTATGCCACAAATATCTG-TTCT
*
61785804 AGTGGCTATGCAACAAATATCTGTTCT
1 AGTGGCTATGCCACAAATATCTGTTCT
* *
61785831 AGTGGCTATGCCACTAATACCTGTTCT
1 AGTGGCTATGCCACAAATATCTGTTCT
* *
61785858 GGTGGCTCTGCCAC-AATATCTGTATCT
1 AGTGGCTATGCCACAAATATCTGT-TCT
* * * *
61785885 GGTGACTCTGTCAC-AATATCTGTTCT
1 AGTGGCTATGCCACAAATATCTGTTCT
61785911 GGCGGCCATG
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 11 0.12
27 75 0.80
28 8 0.09
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (27 bp):
AGTGGCTATGCCACAAATATCTGTTCT
Found at i:61785908 original size:53 final size:54
Alignment explanation
Indices: 61785793--61785921 Score: 136
Period size: 53 Copynumber: 2.4 Consensus size: 54
61785783 TTTGCCAAAT
* *
61785793 TATCTGTTTCTAGTGGCTATGCAACAAATATCTGTTCTAGTGGCTATGCCACTAA
1 TATCTG-TTCTGGTGGCTATGCAACAAATATCTGTTCTAGTGACTATGCCACTAA
* * * * * *
61785848 TACCTGTTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCAC-AA
1 TATCTGTTCTGGTGGCTATGCAACAAATATCTGT-TCTAGTGACTATGCCACTAA
* *
61785901 TATCTGTTCTGGCGGCCATGC
1 TATCTGTTCTGGTGGCTATGC
61785922 TTGAAATTCT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
53 28 0.46
54 28 0.46
55 5 0.08
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (54 bp):
TATCTGTTCTGGTGGCTATGCAACAAATATCTGTTCTAGTGACTATGCCACTAA
Found at i:61786039 original size:6 final size:6
Alignment explanation
Indices: 61786030--61786120 Score: 51
Period size: 6 Copynumber: 14.8 Consensus size: 6
61786020 TTGCATTCAC
** * *
61786030 ATTCTG ATTCTG ATTCTG -TTACTTG ATAATG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* ** * *
61786080 ATCCTG ATTCAA ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
61786121 AGTTCTGTAA
Statistics
Matches: 63, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
5 3 0.05
6 54 0.86
7 4 0.06
8 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:61786087 original size:25 final size:25
Alignment explanation
Indices: 61786033--61786089 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
61786023 CATTCACATT
* * *
61786033 CTGATTCTGATTCTGTTACTTGATA
1 CTGATTCTGATTCTGTCACCTAATA
* *
61786058 ATGATTCTGATTCTGTCACCTAATC
1 CTGATTCTGATTCTGTCACCTAATA
61786083 CTGATTC
1 CTGATTC
61786090 AAATTCTGAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:61787206 original size:19 final size:20
Alignment explanation
Indices: 61787182--61787219 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
61787172 GGTACCACCA
61787182 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
61787201 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
61787220 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:61787607 original size:93 final size:93
Alignment explanation
Indices: 61787448--61787618 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
61787438 CCCCCTAAGT
* *
61787448 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
61787513 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
61787541 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
61787606 CGAGTTCGGATGC
66 CGAGTTCGGATGC
61787619 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61787615 original size:46 final size:46
Alignment explanation
Indices: 61787443--61787615 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
61787433 TAACCCCCCC
* * * *
61787443 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
61787489 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
61787537 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
61787582 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61787616 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:61792369 original size:13 final size:13
Alignment explanation
Indices: 61792351--61792377 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
61792341 TCCAGCTTTT
61792351 CTCGGATACCTTC
1 CTCGGATACCTTC
61792364 CTCGGATACCTTC
1 CTCGGATACCTTC
61792377 C
1 C
61792378 CCTCGAGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.41, G:0.15, T:0.30
Consensus pattern (13 bp):
CTCGGATACCTTC
Found at i:61794722 original size:19 final size:20
Alignment explanation
Indices: 61794698--61794735 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
61794688 GGTACCACCA
61794698 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
61794717 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
61794736 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:61795075 original size:93 final size:93
Alignment explanation
Indices: 61794965--61795135 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
61794955 GCCCCTAAGT
* *
61794965 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
61795030 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
61795058 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
61795123 CGAGTTCGGATGC
66 CGAGTTCGGATGC
61795136 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61795132 original size:46 final size:46
Alignment explanation
Indices: 61794960--61795132 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
61794950 AACCCGCCCC
* * * *
61794960 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
61795006 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
61795054 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
61795099 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61795133 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:61807073 original size:27 final size:27
Alignment explanation
Indices: 61807042--61807393 Score: 137
Period size: 27 Copynumber: 13.3 Consensus size: 27
61807032 TCAGTTTACC
* *
61807042 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
61807069 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
61807096 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
61807123 AAATTACCAAAATA----AGA----TA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** *
61807142 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** *
61807169 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** * * **
61807196 GAATTACCATTTTACCTTCAATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* ***** **
61807223 GAATTACTGTCTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** *
61807250 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** **
61807277 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
** * * **
61807304 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
**
61807331 AAATTACCAAAATACCCTCGATTAATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
61807358 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
61807385 AAATTACCA
1 AAATTACCA
61807394 TTTTGCCCCT
Statistics
Matches: 267, Mismatches: 49, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
19 12 0.04
23 4 0.01
26 2 0.01
27 249 0.93
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.34
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:61807184 original size:54 final size:54
Alignment explanation
Indices: 61807139--61807310 Score: 263
Period size: 54 Copynumber: 3.2 Consensus size: 54
61807129 CCAAAATAAG
61807139 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
* * * * *
61807193 ATAGAATTACCATTTTACCTTCAATTTACAGAATTACTGTCTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
* *
61807247 ACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
* *
61807301 ACAAAATTAC
1 ATAGAATTAC
61807311 TGAAATACCC
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
Found at i:61807243 original size:81 final size:81
Alignment explanation
Indices: 61807153--61807366 Score: 284
Period size: 81 Copynumber: 2.6 Consensus size: 81
61807143 AATTACCATT
* * *
61807153 TTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCTTCAAT
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAAT
*
61807218 TTACAGAATTACTGTC
66 TTACAAAATTACTGTC
*
61807234 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGAT
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAAT
**
61807299 TTACAAAATTACTGAA
66 TTACAAAATTACTGTC
* * * * *** * *
61807315 ATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAATAAAATTACCA
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
61807367 AAATACCCCT
Statistics
Matches: 117, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 117 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.36
Consensus pattern (81 bp):
TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAAT
TTACAAAATTACTGTC
Found at i:61807320 original size:54 final size:54
Alignment explanation
Indices: 61807143--61807397 Score: 208
Period size: 54 Copynumber: 4.7 Consensus size: 54
61807133 AATAAGATAG
** * * *
61807143 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
** * * * ** * *
61807197 AATTACCATTTTACCTTCAATTTACAGAATTACTGTCTTACCCTCGATTTACAG
1 AATTACCATAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
**
61807251 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
1 AATTACCATAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
* * * * * *** * *
61807305 AATTACTGA-AATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAATAA
1 AATTAC-CATAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
* * * *
61807359 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCATTTT
1 AATTACCATAATACCCTCGA-TTTATAGAATTACCATTTT
61807398 GCCCCTAGGG
Statistics
Matches: 164, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
53 1 0.01
54 162 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (54 bp):
AATTACCATAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
Found at i:61807818 original size:6 final size:6
Alignment explanation
Indices: 61807787--61807874 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
61807777 TTACATTCAC
* * *
61807787 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ACTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
61807836 -TCACCTG ATTCTG ATTCTG ATTCTA ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
61807875 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 3 0.05
6 53 0.82
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:61807823 original size:31 final size:31
Alignment explanation
Indices: 61807787--61807859 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
61807777 TTACATTCAC
* * *
61807787 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGACTCTGTCACCTGATACTG
*
61807818 ATTCTGATTCTGACTCTGTCACCTGATTCTG
1 ATTCTGATTCTGACTCTGTCACCTGATACTG
61807849 ATTCTGATTCT
1 ATTCTGATTCT
61807860 AATTCTAGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGACTCTGTCACCTGATACTG
Found at i:61808855 original size:20 final size:20
Alignment explanation
Indices: 61808822--61808865 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
61808812 TAAAGAAAGT
* *
61808822 AAATGCAATGGAAAGTAATG
1 AAATGCAATGGAAAATAATA
61808842 AAATGCAAAT-GAAAATAATA
1 AAATGC-AATGGAAAATAATA
61808862 AAAT
1 AAAT
61808866 TTGAAAGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.59, C:0.05, G:0.16, T:0.20
Consensus pattern (20 bp):
AAATGCAATGGAAAATAATA
Found at i:61811530 original size:40 final size:40
Alignment explanation
Indices: 61811433--61811623 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 40
61811423 TCGAATGGTG
* * * * *
61811433 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAA
* * *
61811474 TCCGGGTCAATTCCCGAAGGCATTTGTGCTAGTTACC-AA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
61811513 TACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 T-CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* *
61811554 ACCGGGTTAAGTCCCGAAGGCATTCT-TGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-TGTGCGAGTTACCAAA
* * *
61811594 TCCGGGCTAATTCCC-AAGGCAATTGTGCGA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
61811624 ATCACTATAA
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 86 0.66
41 28 0.22
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
Found at i:61811638 original size:39 final size:39
Alignment explanation
Indices: 61811434--61811656 Score: 184
Period size: 40 Copynumber: 5.6 Consensus size: 39
61811424 CGAATGGTGT
** * *
61811434 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * * *
61811474 TCCGGG-TCAATTCCCGAAGGCATTTGTGCTAGTTACCAATA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTACTAA-A
* * *
61811515 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* *
61811555 CCGGGTTAAGTCCCGAAGGC-ATTCTTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * *
61811594 TCCGGGCTAATTCCC-AAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
*
61811634 CCGGGC-AATGTCCCGAAGACAAT
1 CCGGGCTAA-GTCCCGAAGGCAAT
61811657 CGAGCAGTCG
Statistics
Matches: 154, Mismatches: 18, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.01
39 31 0.20
40 92 0.60
41 29 0.19
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:61811647 original size:79 final size:79
Alignment explanation
Indices: 61811433--61811651 Score: 232
Period size: 80 Copynumber: 2.7 Consensus size: 79
61811423 TCGAATGGTG
* * *
61811433 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAAT-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTCAATGTCCCGAAGGCAT
* *
61811497 TTGTGCTAGTTACCAA
64 TTGTGCGAGTTACAAA
* * * * *
61811513 TACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAA-GTCCCGAAGGCAT
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTCAATGTCCCGAAGGCAT
61811577 TCT-TGCGAGTTACTAAA
64 T-TGTGCGAGTTAC-AAA
* *
61811594 TCCGGGCTAATTCCC-AAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGGTCAATGTCCCGAAG
61811652 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
78 4 0.03
79 32 0.28
80 45 0.39
81 35 0.30
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTCAATGTCCCGAAGGCATTT
GTGCGAGTTACAAA
Found at i:61819609 original size:40 final size:40
Alignment explanation
Indices: 61819511--61819695 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
61819501 GTGTCTGGGC
* * * * *
61819511 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCAGGT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACAAAATCCGGGT
* * *
61819552 CAATTCCCGAAGGCATTTGTGCTAGTTACCAAAAT-CGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTA-CAAAATCCGGGT
61819592 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA-CCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTA-CAAAATCCGGGT
* *
61819632 TAAGTCCCGAAGGCATTCT-TGCGAGTTACTAAATCCGGGC
1 TAAGTCCCGAAGGCATT-TGTGCGAGTTACAAAATCCGGGT
* *
61819672 TAATTCCCGAAGGCAATTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGA
61819696 ATCACTATAA
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 5 0.04
40 95 0.76
41 25 0.20
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACAAAATCCGGGT
Found at i:61819708 original size:80 final size:79
Alignment explanation
Indices: 61819507--61819722 Score: 215
Period size: 80 Copynumber: 2.7 Consensus size: 79
61819497 AATGGTGTCT
* * * * *
61819507 GGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCAGGTCAATTCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTCAAGTCCCGAAGGCATTTGT
*
61819572 GCTAGTTACCAAAATC
64 GCGAGTTACCAAAATC
* * * * *
61819588 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCT-T
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTCAAGTCCCGAAGGCATT-TGT
*
61819652 GCGAGTTA-CTAAATCC
64 GCGAGTTACCAAAAT-C
* *
61819668 GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACC-GG-CAATGTCCCGAAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGGTCAA-GTCCCGAAG
61819723 ACAATCGAGC
Statistics
Matches: 112, Mismatches: 18, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
78 2 0.02
79 18 0.16
80 62 0.55
81 30 0.27
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTCAAGTCCCGAAGGCATTTGTGC
GAGTTACCAAAATC
Found at i:61825929 original size:3 final size:3
Alignment explanation
Indices: 61825921--61825985 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
61825911 ATATATATAT
61825921 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
61825969 TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
61825986 TAAGAACAAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:61826120 original size:13 final size:13
Alignment explanation
Indices: 61826102--61826136 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
61826092 ACAATAATGG
61826102 GTTAAGGGTTAAT
1 GTTAAGGGTTAAT
61826115 GTTAAGGGTTAAT
1 GTTAAGGGTTAAT
61826128 GTTAAGGGT
1 GTTAAGGGT
61826137 AATACAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.34, T:0.37
Consensus pattern (13 bp):
GTTAAGGGTTAAT
Found at i:61838833 original size:46 final size:45
Alignment explanation
Indices: 61838769--61838989 Score: 198
Period size: 46 Copynumber: 4.8 Consensus size: 45
61838759 TGTAACCCGC
* * *
61838769 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCTTTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCTTT-GCAT
* * * * *
61838815 CCATAAGTGAACTTGGACTCAACTCAATGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGCT--TTGCAT
* * * *
61838865 CTCA-CA---AACTCAGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGC-TTTGCAT
* *
61838908 CCATAAGTGAACTCGGACTCAGCTCAACGAGTTCAGACGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGC-TTTGCAT
*
61838954 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAG
61838990 ATGCCTAAAT
Statistics
Matches: 141, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
42 2 0.01
43 6 0.04
44 2 0.01
45 1 0.01
46 96 0.68
47 21 0.15
48 1 0.01
49 3 0.02
50 5 0.04
51 4 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCTTTGCAT
Found at i:61841047 original size:34 final size:34
Alignment explanation
Indices: 61841008--61841078 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
61840998 TTGGTTAGAG
61841008 ATATTCTAATCTGTCCAAACCTTGCTAACATGTA
1 ATATTCTAATCTGTCCAAACCTTGCTAACATGTA
*
61841042 ATATTCTCATCTGTCCAAACCTTGCTAACATGTA
1 ATATTCTAATCTGTCCAAACCTTGCTAACATGTA
61841076 ATA
1 ATA
61841079 AACTTTTCAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.35
Consensus pattern (34 bp):
ATATTCTAATCTGTCCAAACCTTGCTAACATGTA
Found at i:61841738 original size:15 final size:15
Alignment explanation
Indices: 61841690--61841758 Score: 70
Period size: 15 Copynumber: 4.7 Consensus size: 15
61841680 TAAAGATAAC
*
61841690 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
* *
61841704 AAGAAATCCA-AGATT
1 AAGAAACCCAGA-ATA
*
61841719 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
61841734 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
61841749 AAGAAACCCA
1 AAGAAACCCA
61841759 AGATAGGATA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
14 9 0.20
15 34 0.77
16 1 0.02
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:61841754 original size:30 final size:30
Alignment explanation
Indices: 61841690--61841758 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
61841680 TAAAGATAAC
* *
61841690 AAGAAAACC-GAATAAAGAAATCCAAGATT
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
*
61841719 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
61841749 AAGAAACCCA
1 AAGAAACCCA
61841759 AGATAGGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:61844756 original size:46 final size:45
Alignment explanation
Indices: 61844689--61844955 Score: 172
Period size: 46 Copynumber: 5.8 Consensus size: 45
61844679 TGTAACCCGC
* *
61844689 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGAGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGAGTT-GCAT
* * *
61844735 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--G--GAGTTGCAT
* * * *
61844785 CTCA-CA---AACTCAGACTCAAGTCAATGAGTTCGGGCA-TTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGG-AGTT-GCAT
* *
61844828 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G---AGTTGCAT
* * * * * *
61844878 -C-TCA-CGAACTCGTACTTAACTCAACGAGTTTGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGAG-TTGCAT
* *
61844921 CCATAAGTGAACTGGGACTCAAATCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
61844956 TATGCCTAAA
Statistics
Matches: 170, Mismatches: 30, Indels: 42
0.70 0.12 0.17
Matches are distributed among these distances:
42 5 0.03
43 11 0.06
44 2 0.01
45 3 0.02
46 81 0.48
47 46 0.27
48 3 0.02
49 2 0.01
50 9 0.05
51 8 0.05
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGAGTTGCAT
Found at i:61844900 original size:47 final size:47
Alignment explanation
Indices: 61844743--61844907 Score: 151
Period size: 47 Copynumber: 3.5 Consensus size: 47
61844733 ATCCATAAGT
* *
61844743 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * * * *
61844790 AAACTCAGACTCAAGTCAATGAGTTCGG--G-C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
*
61844836 GAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
61844883 GAACTCGTACTTAACTCAACGAGTT
1 GAACTCGGACTCAACTCAACGAGTT
61844908 TGGGCGTTTG
Statistics
Matches: 91, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 25 0.27
47 44 0.48
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61844953 original size:93 final size:92
Alignment explanation
Indices: 61844696--61844963 Score: 374
Period size: 93 Copynumber: 2.9 Consensus size: 92
61844686 CGCCCATAAG
* *
61844696 CGAACTCGGACTCAACTCAACGAGCTCGGGAGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTC-GACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
61844761 ACGAGCTCAGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
61844789 CAAACTCAGACTCAAGTCAATGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTC-GACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
61844854 ATGAGTTCGGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * * *
61844882 CGAACTCGTACTTAACTCAACGAGTTTGGGCGTTTGCATCCATAAGTGAACTGGGACTCAAATCA
1 CGAACTCG-ACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
61844947 ACGAGTTCGTATGCCTA
65 ACGAGTTCGGATGCCTA
61844964 AATATCCGAA
Statistics
Matches: 153, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
92 1 0.01
93 152 0.99
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (92 bp):
CGAACTCGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61846321 original size:19 final size:20
Alignment explanation
Indices: 61846287--61846327 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
61846277 ACCTACAAAC
61846287 AAAATAAAAATCGCAAACAA
1 AAAATAAAAATCGCAAACAA
* *
61846307 AAAATAAACAT-GCAAAGAA
1 AAAATAAAAATCGCAAACAA
61846326 AA
1 AA
61846328 TGAAATTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.71, C:0.12, G:0.07, T:0.10
Consensus pattern (20 bp):
AAAATAAAAATCGCAAACAA
Found at i:61850912 original size:6 final size:6
Alignment explanation
Indices: 61850882--61850981 Score: 73
Period size: 6 Copynumber: 16.3 Consensus size: 6
61850872 AAGAAACATT
* *
61850882 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
61850930 ATTAG- GTGACAGA ATCGGA ATCA-A TATCAGGTA A-CAGA ATCAGA ATCAGA
1 ATCAGA AT--CAGA ATCAGA ATCAGA -ATCA-G-A ATCAGA ATCAGA ATCAGA
61850980 AT
1 AT
61850982 GTGAATGTAA
Statistics
Matches: 74, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
5 5 0.07
6 61 0.82
7 5 0.07
8 2 0.03
9 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:61850945 original size:25 final size:25
Alignment explanation
Indices: 61850891--61850981 Score: 98
Period size: 25 Copynumber: 3.7 Consensus size: 25
61850881 TATCAGAACT
* *
61850891 AGAATCAAAATGAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCAGGTAA-C
* *
61850915 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
61850940 AGAATCGGAATCA-ATATCAGGTAAC
1 AGAATCAGAATCAGA-ATCAGGTAAC
61850965 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
61850982 GTGAATGTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
24 17 0.31
25 36 0.65
26 2 0.04
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:61851336 original size:22 final size:22
Alignment explanation
Indices: 61851308--61851367 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
61851298 GAAAATACGT
*
61851308 TTGGCACACAGTCATA-GTCAGG
1 TTGGCACACAGCCATATGT-AGG
*
61851330 TTGGCACAGAGCCATATGTAGG
1 TTGGCACACAGCCATATGTAGG
* *
61851352 TTGGCGCAAAGCCATA
1 TTGGCACACAGCCATA
61851368 ATCAGAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 31 0.94
23 2 0.06
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (22 bp):
TTGGCACACAGCCATATGTAGG
Found at i:61851788 original size:27 final size:26
Alignment explanation
Indices: 61851758--61851865 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
61851748 AGGGGAAAAA
* *
61851758 TGGTAATTTTACCCCACAAGGGTATCT
1 TGGTAATTCTACCCTACAAGGGTAT-T
*
61851785 TGGTAATTCTACCCTACAGGGGTATT
1 TGGTAATTCTACCCTACAAGGGTATT
* *
61851811 TCGATATTTCTACCCTACAAGGGTATT
1 T-GGTAATTCTACCCTACAAGGGTATT
* *
61851838 TATGTAATTCTACCCTACAGGGGTATT
1 T-GGTAATTCTACCCTACAAGGGTATT
61851865 T
1 T
61851866 CAATAATTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
26 2 0.03
27 67 0.97
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (26 bp):
TGGTAATTCTACCCTACAAGGGTATT
Found at i:61851861 original size:54 final size:53
Alignment explanation
Indices: 61851763--61851875 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 53
61851753 AAAAATGGTA
61851763 ATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGAT
1 ATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGAT
* * *
61851816 ATTTCTACCCTACAAGGGTAT-TTATGTAATTCTACCCTACAGGGGTATTTCAAT
1 ATTT-TACCCCACAAGGGTATCTT-GGTAATTCTACCCTACAGGGGTATTTCGAT
61851870 AATTTT
1 -ATTTT
61851876 GTAAATCGAG
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
53 6 0.11
54 44 0.81
55 4 0.07
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGAT
Found at i:61851888 original size:27 final size:27
Alignment explanation
Indices: 61851858--61851961 Score: 75
Period size: 27 Copynumber: 3.9 Consensus size: 27
61851848 TACCCTACAG
61851858 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAATAATTTTGTAAATCGA
*** * *
61851885 GGGTAAAACAATAATTTTGTAAGTCGG
1 GGGTATTTCAATAATTTTGTAAATCGA
** ** **
61851912 GGGTACTTT-GGTAATTTTACAAGCCGA
1 GGGTA-TTTCAATAATTTTGTAAATCGA
* *
61851939 GGGTATTTCAGTAATTTGGTAAA
1 GGGTATTTCAATAATTTTGTAAA
61851962 CTAAAGTATT
Statistics
Matches: 56, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
26 3 0.05
27 53 0.95
ACGTcount: A:0.32, C:0.09, G:0.24, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAATAATTTTGTAAATCGA
Found at i:61854539 original size:78 final size:78
Alignment explanation
Indices: 61854445--61854602 Score: 262
Period size: 78 Copynumber: 2.0 Consensus size: 78
61854435 TGACATTGGC
*
61854445 ATAGGCATATGAGTAATTAATATGATTACAACCCATTAGCCCATATAAGCCAATTTATATAGCTA
1 ATAGGCATATGAGTAATTAATATGATTACAACCCATTAGCCCATATAAGCCAATTTATATAGATA
61854510 CATACCAAATCAA
66 CATACCAAATCAA
** * *
61854523 ATAGGCATATGAGTAATTAATATGATTGGAACTCATTAGCCCATATAAGCCAATTTATATGGATA
1 ATAGGCATATGAGTAATTAATATGATTACAACCCATTAGCCCATATAAGCCAATTTATATAGATA
*
61854588 CATACCATATCAA
66 CATACCAAATCAA
61854601 AT
1 AT
61854603 CCTTATTCAT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (78 bp):
ATAGGCATATGAGTAATTAATATGATTACAACCCATTAGCCCATATAAGCCAATTTATATAGATA
CATACCAAATCAA
Found at i:61857443 original size:28 final size:27
Alignment explanation
Indices: 61857382--61857449 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
61857372 AGTGAGTCCA
61857382 CACACTTAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTATATAATCAACTCG
*
61857409 CACACTTAGTGCTATATGATCAAACTCG
1 CACACTTAGTGCTATATAATC-AACTCG
61857437 CACACTTAGTGCT
1 CACACTTAGTGCT
61857450 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (27 bp):
CACACTTAGTGCTATATAATCAACTCG
Found at i:61861647 original size:39 final size:40
Alignment explanation
Indices: 61861548--61861699 Score: 166
Period size: 39 Copynumber: 3.9 Consensus size: 40
61861538 CATTGGAATG
* * * *
61861548 ATATCCGGGCTAAGTCCCGAAGGCAATT-ATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
*
61861588 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
* * **
61861628 ATAT-CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
* * *
61861667 AAATCC-GGTTAAGACCCGAAGGCAATCGTGCGA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA
61861700 ATCACTATAA
Statistics
Matches: 95, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 59 0.62
40 36 0.38
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
Found at i:61861648 original size:79 final size:79
Alignment explanation
Indices: 61861548--61861699 Score: 198
Period size: 79 Copynumber: 1.9 Consensus size: 79
61861538 CATTGGAATG
* * ** *
61861548 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCC-GGCTAAGACCCGAAGGCA
*
61861613 TTCGTGCGAGTTGTT
65 ATCGTGCGAGTTGTT
* * * *
61861628 ATAT-CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGCTAAGACCCGAAGGCAA
61861692 TCGTGCGA
66 TCGTGCGA
61861700 ATCACTATAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
78 25 0.40
79 33 0.53
80 4 0.06
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGCTAAGACCCGAAGGCAA
TCGTGCGAGTTGTT
Found at i:61861715 original size:79 final size:79
Alignment explanation
Indices: 61861552--61861716 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
61861542 GGAATGATAT
* * ** * *
61861552 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* ***
61861617 TGCGAGTTGTTATA
66 TGCGAATCACTATA
* * * * *
61861631 TCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCC-GGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
61861695 TGCGAATCACTATAA
66 TGCGAATCACTAT-A
61861710 CCGGGCT
1 CCGGGCT
61861717 GGTCCCGAAG
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
78 29 0.42
79 40 0.58
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATA
Found at i:61867666 original size:19 final size:19
Alignment explanation
Indices: 61867639--61867679 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
61867629 CTTGAAAAGA
61867639 TTCACGACGTCTTTCATGT
1 TTCACGACGTCTTTCATGT
*
61867658 TTCATGACGTCTTTCATGT
1 TTCACGACGTCTTTCATGT
61867677 TTC
1 TTC
61867680 GATGCTTCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.46
Consensus pattern (19 bp):
TTCACGACGTCTTTCATGT
Found at i:61869686 original size:39 final size:39
Alignment explanation
Indices: 61869606--61869757 Score: 164
Period size: 40 Copynumber: 3.9 Consensus size: 39
61869596 CATTGGAACG
* * * *
61869606 ATATCC-GGCTAAGTCCCGAAGGCAATT-ATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-TTT
61869645 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTTT
* * **
61869684 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-TT
* * *
61869724 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA
61869758 ATCACTATAA
Statistics
Matches: 97, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 46 0.47
40 51 0.53
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTTT
Found at i:61869704 original size:79 final size:78
Alignment explanation
Indices: 61869606--61869757 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 78
61869596 CATTGGAACG
* * ** * *
61869606 ATATCCGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAA
61869671 TCGTGCGAGTTTT
66 TCGTGCGAGTTTT
* * * *
61869684 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCC-GGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
61869749 ATCGTGCGA
65 ATCGTGCGA
61869758 ATCACTATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
78 6 0.10
79 57 0.90
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (78 bp):
ATATCCGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAA
TCGTGCGAGTTTT
Found at i:61869772 original size:40 final size:40
Alignment explanation
Indices: 61869606--61869811 Score: 157
Period size: 40 Copynumber: 5.2 Consensus size: 40
61869596 CATTGGAACG
* ** * * * *
61869606 ATATCC-GGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * **
61869645 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-TTT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * * *
61869684 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAA-TCACT
* *
61869724 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* ** * * * * *
61869764 ATAACCGGGCTGGGTCCCGAAGACAATCGAGCGAGTCGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
61869804 ATATCCGG
1 ATATCCGG
61869812 TTAAATCCCG
Statistics
Matches: 135, Mismatches: 28, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
38 1 0.01
39 40 0.30
40 92 0.68
41 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
Found at i:61876766 original size:28 final size:27
Alignment explanation
Indices: 61876703--61876772 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
61876693 ATAGTGAGTC
61876703 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
61876730 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
61876758 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61876773 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:61879956 original size:20 final size:20
Alignment explanation
Indices: 61879931--61879975 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
61879921 AGGGACTAAA
**
61879931 ATGAAAAATTGTAAAATTTG
1 ATGAAAAATTCAAAAATTTG
*
61879951 ATGAAAAATTCAAAAATTTT
1 ATGAAAAATTCAAAAATTTG
61879971 ATGAA
1 ATGAA
61879976 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.02, G:0.11, T:0.33
Consensus pattern (20 bp):
ATGAAAAATTCAAAAATTTG
Found at i:61886783 original size:41 final size:41
Alignment explanation
Indices: 61886726--61886915 Score: 285
Period size: 41 Copynumber: 4.7 Consensus size: 41
61886716 TCGGGGTTTA
61886726 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
61886767 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
61886808 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
61886849 AA-CCGAACCTAGTTTCG-AGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
61886888 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
61886916 TGAGTCAGCG
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
39 19 0.15
40 22 0.17
41 90 0.69
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:61891222 original size:40 final size:40
Alignment explanation
Indices: 61891177--61891343 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
61891167 CGGAATATAA
61891177 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * *
61891217 CCGGATA-AATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
61891256 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61891296 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
61891336 CCGGATAT
1 CCGGATAT
61891344 CATTCAATTT
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.33
40 66 0.65
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61902928 original size:39 final size:40
Alignment explanation
Indices: 61902765--61902930 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
61902755 AAATTGAATG
* * * * **
61902765 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
61902805 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
61902845 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-TTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
61902884 CTATCCGGGCT-AGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
61902923 ATATCCGG
1 ATATCCGG
61902931 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 1 0.01
38 21 0.20
39 20 0.19
40 62 0.60
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:61914248 original size:40 final size:40
Alignment explanation
Indices: 61914165--61914372 Score: 157
Period size: 40 Copynumber: 5.2 Consensus size: 40
61914155 CGGGATTTAA
* * * * * **
61914165 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCCAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
61914205 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
61914245 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* *
61914285 CCAGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* *** * * *
61914325 CCGAATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
61914365 CCGGATAT
1 CCGGATAT
61914373 CATTCCAATG
Statistics
Matches: 134, Mismatches: 33, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
39 2 0.01
40 132 0.99
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:61914286 original size:80 final size:80
Alignment explanation
Indices: 61914219--61914372 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
61914209 TTATAGTGAT
* * * ** * *
61914219 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGAATATAATAACTAGCACAAATGCCTTCGGGACTTAG
*
61914284 CCCAGATATAACAAC
66 CCCGGATATAACAAC
* * * *
61914299 TCGCACGAATGCCTTCGGGTCTTAGCCCGAATATAATTACTAGCATAATTGCCTTCGGGACTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGAATATAATAACTAGCACAAATGCCTTCGGGACTTAG
61914364 CCCGGATAT
66 CCCGGATAT
61914373 CATTCCAATG
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (80 bp):
TCGCACGAATGCCTTCGGGTCTTAACCCGAATATAATAACTAGCACAAATGCCTTCGGGACTTAG
CCCGGATATAACAAC
Found at i:61918586 original size:39 final size:39
Alignment explanation
Indices: 61918491--61918587 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 39
61918481 TTATCTCAGT
*
61918491 ATCGCGCACTTAGTGCCTCATATAGCCGAAGCTATTCCA
1 ATCGCACACTTAGTGCCTCATATAGCCGAAGCTATTCCA
* * **
61918530 ATTCGCACACTTAGTGCCAT-TTATAGTCGAAGCTATTTTA
1 A-TCGCACACTTAGTGCC-TCATATAGCCGAAGCTATTCCA
61918570 ATCGCACACTTAGTGCCT
1 ATCGCACACTTAGTGCCT
61918588 AACATAATCG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
38 1 0.02
39 17 0.33
40 32 0.63
41 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (39 bp):
ATCGCACACTTAGTGCCTCATATAGCCGAAGCTATTCCA
Found at i:61920248 original size:43 final size:42
Alignment explanation
Indices: 61920152--61920251 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
61920142 GATTTGAGAT
* *
61920152 TTACGTGTAAGACCATGTCTGGGATATCGGCATCGTATTTGG
1 TTACGTGTAAGACCATGTCTGGAATATCGGCATCGTATTTGA
* * * *
61920194 TTTCGTATAAGACCCTGTCTGGAATAGT-GGTATCGATATTTGA
1 TTACGTGTAAGACCATGTCTGGAATA-TCGGCATCG-TATTTGA
*
61920237 TTACATGTAAGACCA
1 TTACGTGTAAGACCA
61920252 CATCTGGGAC
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
42 28 0.61
43 18 0.39
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGAATATCGGCATCGTATTTGA
Found at i:61933960 original size:46 final size:46
Alignment explanation
Indices: 61933907--61934082 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
61933897 TATTTGGGCA
61933907 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
61933953 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
61934000 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
61934046 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61934083 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:61934062 original size:93 final size:93
Alignment explanation
Indices: 61933903--61934074 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61933893 GGGATATTTG
* *
61933903 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
61933968 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
61933996 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
61934061 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
61934075 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:61937055 original size:15 final size:15
Alignment explanation
Indices: 61937035--61937103 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
61937025 GTATCTTGGG
61937035 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
61937050 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
61937065 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
61937080 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
61937095 TTTCTTTAT
1 TTTCTTTAT
61937104 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:61937104 original size:30 final size:30
Alignment explanation
Indices: 61937026--61937113 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
61937016 CATAGTATCG
* * * *
61937026 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
61937056 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
61937086 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
61937114 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:61939550 original size:46 final size:46
Alignment explanation
Indices: 61939497--61939672 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
61939487 TATTTGGGCA
61939497 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
61939543 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
61939590 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
61939636 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61939673 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:61939652 original size:93 final size:93
Alignment explanation
Indices: 61939493--61939664 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61939483 GGGATATTTG
* *
61939493 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
61939558 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
61939586 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
61939651 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
61939665 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:61942725 original size:28 final size:29
Alignment explanation
Indices: 61942680--61942758 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 29
61942670 CCACGTGATT
* * * *
61942680 CAAGCCCGCACACATAGTGCCATATAGTC
1 CAAGCTCGCACACTTAGTGCCATACAGTA
* *
61942709 CAA-CTCGCACACTTAGTGCCGTACATTA
1 CAAGCTCGCACACTTAGTGCCATACAGTA
*
61942737 CAAGCTCGCACACTCAGTGCCA
1 CAAGCTCGCACACTTAGTGCCA
61942759 ATCTCGTCTC
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.29, C:0.35, G:0.16, T:0.19
Consensus pattern (29 bp):
CAAGCTCGCACACTTAGTGCCATACAGTA
Found at i:61942748 original size:29 final size:28
Alignment explanation
Indices: 61942657--61942757 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
61942647 TACTCAATCA
* *
61942657 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * *
61942686 CGCACACATAGTGCCATATAGTCCAA-CT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
61942714 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
61942743 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
61942758 AATCTCGTCT
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
27 3 0.05
28 23 0.40
29 32 0.55
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:61950591 original size:29 final size:28
Alignment explanation
Indices: 61950557--61950658 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 28
61950547 TACTCAATCA
* *
61950557 CGCACACTTAGTGCCACATGATTCAAGCC
1 CGCACACTTAGTGCCACAT-ATACAAGCT
* * *
61950586 CGCACACATAGTGCCATATAGTCCAA-CT
1 CGCACACTTAGTGCCACATA-TACAAGCT
61950614 CGCACACTTAGTGCCGTACAT-TACAAGCT
1 CGCACACTTAGTGCC--ACATATACAAGCT
*
61950643 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61950659 ATCTCGTCTC
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
27 1 0.02
28 20 0.33
29 37 0.61
30 3 0.05
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCACATATACAAGCT
Found at i:61957565 original size:94 final size:96
Alignment explanation
Indices: 61957400--61957649 Score: 242
Period size: 94 Copynumber: 2.6 Consensus size: 96
61957390 TATGTGTGCT
* * * * **
61957400 AGTGTAAGACATGTTTGGGACATGCATTAGCCTGGAGATATTTAAGCCAGTGTAAGACACGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTGCAAATATACAAGCCAGTGTAAGACACGTCTG
* * ** *
61957465 GGACAT-GCATCAGCATTG-AGACGAGAGCT
66 GAACATGGCATCAACACCGAAGACGAGAGCC
* * *
61957494 GGTGTAAGACATGTCTGGGACATGCATCGGCCT-CACAATATACAAGCTAGTGTAAGAC-CTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTGCA-AATATACAAGCCAGTGTAAGACAC-GTC
*
61957557 TGGAACATGGCATCAACACCGATAGATGAGAGCC
64 TGGAACATGGCATCAACACCGA-AGACGAGAGCC
* * *
61957591 AGTGTAAGACCTGTCTGGGACATGGCATCAACCTTGC-TATATGA-AAGCCAGTGTAAGAC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGCC-TGCAAATAT-ACAAGCCAGTGTAAGAC
61957650 CATGTCGGGG
Statistics
Matches: 126, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
93 2 0.02
94 57 0.45
95 9 0.07
97 30 0.24
98 25 0.20
99 2 0.02
100 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTGCAAATATACAAGCCAGTGTAAGACACGTCTG
GAACATGGCATCAACACCGAAGACGAGAGCC
Found at i:61957599 original size:49 final size:49
Alignment explanation
Indices: 61957443--61957666 Score: 176
Period size: 49 Copynumber: 4.6 Consensus size: 49
61957433 GGAGATATTT
* * * *
61957443 AAGCCAGTGTAAGACAC-GTCTGGGACAT-GCATCAGCATTG--AGACGA
1 AAGCCAGTGTAAGAC-CTGTCTGGGACATGGCATCAACCTCGATAGATGA
* ** * ** * *
61957489 GAGCTGGTGTAAGACATGTCTGGGACAT-GCATCGGCCTC-ACA-ATATA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAGAT-GA
* *
61957536 CAAGCTAGTGTAAGACCTGTCTGGAACATGGCATCAACAC-CGATAGATGA
1 -AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAAC-CTCGATAGATGA
* * * *
61957586 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTTGCTATATGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAGATGA
*
61957635 AAGCCAGTGTAAGACCATGTCGGGGACATGGC
1 AAGCCAGTGTAAGACC-TGTCTGGGACATGGC
61957667 GTCGGCATCT
Statistics
Matches: 142, Mismatches: 25, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
46 32 0.23
47 2 0.01
48 25 0.18
49 63 0.44
50 18 0.13
51 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.21
Consensus pattern (49 bp):
AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAGATGA
Found at i:61968266 original size:27 final size:27
Alignment explanation
Indices: 61968002--61968424 Score: 420
Period size: 27 Copynumber: 15.7 Consensus size: 27
61967992 TTACCCTACA
* * * *
61968002 AGGGTATGTCGGTCATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* *
61968029 AGGGTATTTCGGTAATTTTACACTAT-A
1 AGGGTATTTCGGTAATTTTACA-AATCG
*
61968056 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
61968083 AGGGTGTTTCGATAATTTTCCAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
61968110 AGGGTCTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* **
61968137 AGGGTATTTTGGTAATTTTACAAATTA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
61968164 AGGGTATTTTGGTAATTTTATAAATAG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
61968191 TGGTTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* **
61968217 AGGGTATTTCAGTAATTTTACAAATTA
1 AGGGTATTTCGGTAATTTTACAAATCG
61968244 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
61968271 AGGGTATTTTGATAATTTTTACAAATTG
1 AGGGTATTTCGGTAA-TTTTACAAATCG
*
61968299 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* ** *
61968326 AGGGTGTTTCAATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
*** * * *
61968353 AACATGTTTCGGTAATTTCACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
61968380 AGGGTATTTCGATAATTTTGCAACTCG
1 AGGGTATTTCGGTAATTTTACAAATCG
61968407 AGGGTATTTCGGTAATTT
1 AGGGTATTTCGGTAATTT
61968425 CTCTTTATTA
Statistics
Matches: 329, Mismatches: 62, Indels: 10
0.82 0.15 0.02
Matches are distributed among these distances:
26 24 0.07
27 281 0.85
28 23 0.07
29 1 0.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:61968831 original size:28 final size:28
Alignment explanation
Indices: 61968743--61968832 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 28
61968733 GCCCCTTTAG
* * *
61968743 GCCCAATCTCGTTCACATGGCCCATCAG
1 GCCCAATCACATTCACATGGCCCATCAA
**
61968771 GCTAAATCACATTCACATGGCCCATC-A
1 GCCCAATCACATTCACATGGCCCATCAA
*
61968798 GACCCAATCGCATTCACATGGCCCATCAA
1 G-CCCAATCACATTCACATGGCCCATCAA
61968827 GCCCAA
1 GCCCAA
61968833 CTACTTCCCA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
27 1 0.02
28 49 0.94
29 2 0.04
ACGTcount: A:0.29, C:0.38, G:0.14, T:0.19
Consensus pattern (28 bp):
GCCCAATCACATTCACATGGCCCATCAA
Found at i:61974560 original size:50 final size:50
Alignment explanation
Indices: 61974495--61974589 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
61974485 GAGTTGATAT
* *
61974495 GAGATCCTATGTAAGACCATGTTT-GAGACATGGCATTGGCATCGACATAA
1 GAGATCCCATATAAGACCATGTTTGGA-ACATGGCATTGGCATCGACATAA
61974545 GAGATCCCATATAAGACCATGTTTGGAACATGGCATTGGCATCGA
1 GAGATCCCATATAAGACCATGTTTGGAACATGGCATTGGCATCGA
61974590 GTTGTGATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 40 0.95
51 2 0.05
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (50 bp):
GAGATCCCATATAAGACCATGTTTGGAACATGGCATTGGCATCGACATAA
Found at i:61982002 original size:79 final size:79
Alignment explanation
Indices: 61981869--61982103 Score: 434
Period size: 79 Copynumber: 3.0 Consensus size: 79
61981859 CTGAGAGATA
*
61981869 AGCAGTTGTATGCTAAGTTTAGAAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
1 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
61981934 ATTGTATCAAGTTT
66 ATTGTATCAAGTTT
*
61981948 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTTAGATTTTTGGGGCAT
1 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
61982013 ATTGTATCAAGTTT
66 ATTGTATCAAGTTT
* *
61982027 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGACTTTTGGTGCAT
1 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
61982092 ATTGTATCAAGT
66 ATTGTATCAAGT
61982104 GATAGGATCC
Statistics
Matches: 151, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 151 1.00
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.37
Consensus pattern (79 bp):
AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
ATTGTATCAAGTTT
Found at i:61984911 original size:15 final size:15
Alignment explanation
Indices: 61984891--61984922 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
61984881 GATTAATGGA
61984891 GGAATATGGAAGTTT
1 GGAATATGGAAGTTT
61984906 GGAATATGGAAGTTT
1 GGAATATGGAAGTTT
61984921 GG
1 GG
61984923 TGTTAGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (15 bp):
GGAATATGGAAGTTT
Found at i:61985554 original size:56 final size:52
Alignment explanation
Indices: 61985485--61985661 Score: 204
Period size: 50 Copynumber: 3.4 Consensus size: 52
61985475 GAGTTGATAT
*
61985485 GAGATCCCATGTAAGACCATGCCCAGGACATGGCATTGGCATTGGCATCGACATAA
1 GAGATCCCATGTAAGACCATG-TC-GGAC-TGGCA-TGGCATTGGCATCGACATAA
* *
61985541 GAGATCCCATGTAAGACCATGTCTG--TGACATGGCATTGGCATCGACATAA
1 GAGATCCCATGTAAGACCATGTCGGACTGGCATGGCATTGGCATCGACATAA
* *
61985591 GAGATCCCATGTAAGACCATGTTTGGAC---CAAGGCATTGGC-TCGACATAA
1 GAGATCCCATGTAAGACCATG-TCGGACTGGCATGGCATTGGCATCGACATAA
* *
61985640 AACATCCCATGTAAGACCATGT
1 GAGATCCCATGTAAGACCATGT
61985662 TTGGGACATG
Statistics
Matches: 110, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
48 1 0.01
49 28 0.25
50 52 0.47
51 6 0.05
54 1 0.01
55 1 0.01
56 21 0.19
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (52 bp):
GAGATCCCATGTAAGACCATGTCGGACTGGCATGGCATTGGCATCGACATAA
Found at i:61985654 original size:49 final size:49
Alignment explanation
Indices: 61985521--61985684 Score: 258
Period size: 50 Copynumber: 3.3 Consensus size: 49
61985511 GACATGGCAT
*
61985521 TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTCTGTGACA
1 TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTTTG-GACA
61985571 TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTTTGGACCA
1 TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTTTGGA-CA
* * *
61985621 AGGCATTGGC-TCGACATAAAACATCCCATGTAAGACCATGTTTGGGACA
1 TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTTT-GGACA
61985670 TGGCATTGGCATCGA
1 TGGCATTGGCATCGA
61985685 GTTGTGTTTC
Statistics
Matches: 106, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
49 44 0.42
50 62 0.58
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (49 bp):
TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTTTGGACA
Found at i:61994845 original size:43 final size:42
Alignment explanation
Indices: 61994782--61994895 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 42
61994772 TATCGTACCA
** * * *
61994782 ATGCCATATCCCAAATATGGTCTTACATG-TGATCTCATATCG
1 ATGCCATAAACCAAGTATGGTCTTACACGAAG-TCTCATATCG
*
61994824 ATGCCAATAAACC-AGCTATGGTCTTACACGAAGTCTCATCTCG
1 ATGCC-ATAAACCAAG-TATGGTCTTACACGAAGTCTCATATCG
**
61994867 ATGCCATATCCCAAGTATGGTCTTACACG
1 ATGCCATAAACCAAGTATGGTCTTACACG
61994896 TAATCTTAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
42 25 0.42
43 34 0.57
44 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATAAACCAAGTATGGTCTTACACGAAGTCTCATATCG
Found at i:61996972 original size:24 final size:24
Alignment explanation
Indices: 61996938--61996987 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
61996928 ACTAAAGTTC
*
61996938 AGCTTTGTACCCAAAACTTCTTCT
1 AGCTTTATACCCAAAACTTCTTCT
*
61996962 AGCTTTATACCCAAAGCTTCTTCT
1 AGCTTTATACCCAAAACTTCTTCT
61996986 AG
1 AG
61996988 GTTATTCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (24 bp):
AGCTTTATACCCAAAACTTCTTCT
Found at i:62014239 original size:43 final size:43
Alignment explanation
Indices: 62014119--62014269 Score: 139
Period size: 43 Copynumber: 3.5 Consensus size: 43
62014109 TATCCTATAT
* * *
62014119 ATGGTCTTACATGTTATCACAT-ATCGATGCCGATAG-CCCAG-C
1 ATGGTCTTACACGTAATCACATAAT-GATGCCAAT-GTCCCAGAC
* * * ** *
62014161 TATGGTCTTAGACGAAATTA-ATTAACAATGTCAATGTCCCAGAC
1 -ATGGTCTTACACGTAATCACA-TAATGATGCCAATGTCCCAGAC
*
62014205 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAGAC
*
62014248 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACGTAATCACAT
62014270 CTCGTTAATT
Statistics
Matches: 86, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 2 0.02
43 81 0.94
44 3 0.03
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAGAC
Found at i:62017485 original size:71 final size:71
Alignment explanation
Indices: 62017401--62017564 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
62017391 CGATTTGTCT
62017401 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62017466 CTTTCA
66 CTTTCA
62017472 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62017537 CTTTCA
66 CTTTCA
62017543 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
62017565 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:62017602 original size:71 final size:70
Alignment explanation
Indices: 62017401--62017598 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
62017391 CGATTTGTCT
* * * *
62017401 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62017466 CTTTCA
65 CTTTCA
* * * *
62017472 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62017537 CTTTCA
65 CTTTCA
* *
62017543 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
62017599 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:62025056 original size:71 final size:71
Alignment explanation
Indices: 62024972--62025135 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
62024962 CGATTTGTCT
62024972 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62025037 CTTTCA
66 CTTTCA
62025043 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62025108 CTTTCA
66 CTTTCA
62025114 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
62025136 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:62025173 original size:71 final size:70
Alignment explanation
Indices: 62024972--62025169 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
62024962 CGATTTGTCT
* * * *
62024972 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62025037 CTTTCA
65 CTTTCA
* * * *
62025043 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62025108 CTTTCA
65 CTTTCA
* *
62025114 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
62025170 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:62027378 original size:48 final size:48
Alignment explanation
Indices: 62027152--62027368 Score: 274
Period size: 48 Copynumber: 4.5 Consensus size: 48
62027142 ATACTAGGGT
* * *
62027152 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTAGCATTTA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGA
* * * * * *
62027200 TATGAGAGCTAGTGTAAGACCATGTTTGGTATC-CGGCATCCGCCTCGA
1 TATGTGAGCTAGTGTAAGACCATGTTTGG-AACATGGCATCAGCATTGA
*
62027248 TATGTGAGCTAGTGTAAGACCATGATTGGAACATGGCATCAGCATTGA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGA
* * * * *
62027296 TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGTATTTA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGA
*
62027344 TATGAGAGCTAGTGTAAGACCATGT
1 TATGTGAGCTAGTGTAAGACCATGT
62027369 CTAGGACATG
Statistics
Matches: 142, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
47 2 0.01
48 138 0.97
49 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGA
Found at i:62027454 original size:87 final size:85
Alignment explanation
Indices: 62027308--62027465 Score: 217
Period size: 87 Copynumber: 1.8 Consensus size: 85
62027298 TGTGAGCCAA
* ** ** * *
62027308 TGTAAGACCATGTTTGGAACATGGCATCGGTATTTATATGAGAGCTAGTGTAAGACCATGTCTAG
1 TGTAAGACCATGTTTGGAACATGGAATCGACAGATATATGAGAACCAGTGTAAGACCATGTCTAG
62027373 GACATGACATTGGCCTCTAG
66 GACATGACATTGGCCTCTAG
*
62027393 TGTAAGACCGTGTTTGGAACATGGAATCGACACCGATATATGAGAACCAGTGTAAGACCATGTCT
1 TGTAAGACCATGTTTGGAACATGGAATCGACA--GATATATGAGAACCAGTGTAAGACCATGTCT
*
62027458 GGGACATG
64 AGGACATG
62027466 GCATCGGCAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 28 0.45
87 34 0.55
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (85 bp):
TGTAAGACCATGTTTGGAACATGGAATCGACAGATATATGAGAACCAGTGTAAGACCATGTCTAG
GACATGACATTGGCCTCTAG
Found at i:62034121 original size:29 final size:29
Alignment explanation
Indices: 62034087--62034189 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
62034077 TAATCAGCCG
** *
62034087 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
62034116 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
62034145 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
62034174 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
62034190 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:62038025 original size:22 final size:22
Alignment explanation
Indices: 62037997--62038044 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
62037987 TGCATGATAA
*
62037997 AATTGGATGTGATGAAAGTCCC
1 AATTGGATGTGATGAAACTCCC
62038019 AATTGGATGTGATGAAACTCCC
1 AATTGGATGTGATGAAACTCCC
62038041 AATT
1 AATT
62038045 CAACCGTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (22 bp):
AATTGGATGTGATGAAACTCCC
Found at i:62038159 original size:48 final size:48
Alignment explanation
Indices: 62038089--62038371 Score: 309
Period size: 48 Copynumber: 5.9 Consensus size: 48
62038079 ATACTAGGGT
* *
62038089 TATGTGATCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* * * * * ** * **
62038137 TATGAGAGCTATTGTAAAACCATATTTGGAGCAAAGCATC-GCCTCGA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* * * *
62038184 TATGTGAGTTAGTGTAAAACCATGTTTGGAACATGGCATCAGCATTGA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
*
62038232 TATGTGAGCTAGTGTAAGACCATGTTTGGAACACGGCATCGGCATTTA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* * * * * * *
62038280 TATGGGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCTA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* *
62038328 TATGTG-GCCTAGTGTAAGACCAAGTTTGGAACATGGCATTGGCA
1 TATGTGAG-CTAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
62038372 CCGATACATA
Statistics
Matches: 192, Mismatches: 41, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
47 38 0.20
48 154 0.80
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
Found at i:62038331 original size:96 final size:95
Alignment explanation
Indices: 62038099--62038418 Score: 286
Period size: 96 Copynumber: 3.3 Consensus size: 95
62038089 TATGTGATCC
* * * * * *
62038099 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTATTGTAAAACCATATTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACA-TTATATGTGAGCTAGTGTAAGACCATGTTT
* * * ** * *
62038164 GGAGCAAAGCATC-GCCTCGATATGTGAGTT
65 GGAACAAGGCATCGGCATATATATGAGAGCT
* *
62038194 AGTGTAAAACCATGTTTGGAACATGGCATC-AGCATTGATATGTGAGCTAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGA-CATT-ATATGTGAGCTAGTGTAAGACCATGTT
* * * *
62038258 TGGAACACGGCATCGGCATTTATATGGGTGCT
64 TGGAACAAGGCATCGGCATATATATGAGAGCT
* * *
62038290 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCTATATGTG-GCCTAGTGTAAGACCAAGTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACAT-TATATGTGAG-CTAGTGTAAGACCATGTT
* * * * * *
62038354 TGGAACATGGCATTGGCACCGATACATAAGAGCC
64 TGGAACAAGGCATCGGCA--TATATATGAGAGCT
* *
62038388 ACTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGAACATGGCATCG
62038419 GCTTCTTACC
Statistics
Matches: 187, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
94 2 0.01
95 66 0.35
96 80 0.43
97 2 0.01
98 37 0.20
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGACATTATATGTGAGCTAGTGTAAGACCATGTTTG
GAACAAGGCATCGGCATATATATGAGAGCT
Found at i:62040120 original size:42 final size:42
Alignment explanation
Indices: 62039999--62040120 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
62039989 TACTGTACCA
* * *
62039999 ATGCCATATCCTAGATATGGTCTTACATGTGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTTATATCG
* * * * *
62040041 ACGCCAATAGCCCAGCTATGGTCTTACATG-AAGTCTTATTTTG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTTATATCG
*
62040084 ATGCCATATCCCAGATATGGTCTTACACGTAATCTTA
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTTA
62040121 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTTATATCG
Found at i:62041549 original size:305 final size:305
Alignment explanation
Indices: 62040966--62041559 Score: 780
Period size: 305 Copynumber: 1.9 Consensus size: 305
62040956 CCTCATGCCT
* * * * *
62040966 ATTTTTGTCCACTAACTTAAAAAATGGTCTAATTACCATCTAAAGACCTTCAATTTAAAATTTCA
1 ATTTTTATCCACCAACTTAAAAAATGGACTAATTACAATCTAAAGACCTTCAATTTAAAATTACA
* *
62041031 TAACAATTAGACACCTCTAGCATGTAGAACTCAACTTTTGCATTTTTTACAATTTAGTCCTTTTT
66 TAACAATTAGACACCTCTAGCATATAGAACTCAACTTTTGCACTTTTTACAATTTAGTCCTTTTT
** * *
62041096 ACTAAATTGAGCGCTCAAACGTCAAAATTTTTTAACAAAATTTTCACAAAATCATTCTATAAAAT
131 ACTAAATTGAGCGCTCAAACGTCAAAATTTTCGAACAAAATTTTCACAAAATCATTCCATAAAAC
* * * * * *
62041161 TTTAGACATAAAAATATAGGAAAAATAAATTTTTATGTGTCAGATTTGTTGTCTCGAAACCACTG
196 TTTAGACATAAAAACATAAGAAAAATAAATTTTTATGAGTCAAATTGGTGGTCTCGAAACCACTG
* *
62041226 TTCCGACTATGGCCAAAATTGGGATGTTACACTTACTCCATGTCC
261 TTCCGACTATGCCCAAAATCGGGATGTTACACTTACTCCATGTCC
** * **
62041271 ATTTTTATCCACCAACTTAAGTAATGGACTAATTATAATCTACCGACC-TCTAATTTAAAATTAC
1 ATTTTTATCCACCAACTTAAAAAATGGACTAATTACAATCTAAAGACCTTC-AATTTAAAATTAC
* * *
62041335 ATAGCAATTAGACACCTCTAGCTTATAGAACTCAAGTTTTGCACTTTTTACAATTTAGTCCTTTT
65 ATAACAATTAGACACCTCTAGCATATAGAACTCAACTTTTGCACTTTTTACAATTTAGTCCTTTT
* * * * *
62041400 TGCTATATTGAGTGCTGAAACGTCAAAATTTTCGAACGAAAA-TTTCACAGAATCATTCCATAAA
130 TACTAAATTGAGCGCTCAAACGTCAAAATTTTCGAAC-AAAATTTTCACAAAATCATTCCATAAA
* * * *
62041464 ACTTTATACCATAAATACATAAGAAAAAT-AATTTTTTTGAGTCAAATTGGTGGTCTCGAAATCA
194 ACTTTAGA-CATAAAAACATAAGAAAAATAAATTTTTATGAGTCAAATTGGTGGTCTCGAAACCA
* * * *
62041528 TTGTTCCTATTATGCCCAAAATCGGGCTGTTA
258 CTGTTCCGACTATGCCCAAAATCGGGATGTTA
62041560 TATTAGTTCA
Statistics
Matches: 246, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
304 2 0.01
305 223 0.91
306 21 0.09
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (305 bp):
ATTTTTATCCACCAACTTAAAAAATGGACTAATTACAATCTAAAGACCTTCAATTTAAAATTACA
TAACAATTAGACACCTCTAGCATATAGAACTCAACTTTTGCACTTTTTACAATTTAGTCCTTTTT
ACTAAATTGAGCGCTCAAACGTCAAAATTTTCGAACAAAATTTTCACAAAATCATTCCATAAAAC
TTTAGACATAAAAACATAAGAAAAATAAATTTTTATGAGTCAAATTGGTGGTCTCGAAACCACTG
TTCCGACTATGCCCAAAATCGGGATGTTACACTTACTCCATGTCC
Done.