Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 203 of 410
Found at i:62042684 original size:17 final size:17
Alignment explanation
Indices: 62042641--62042691 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
62042631 GAATTATTTC
* *
62042641 ATTTGTTTATTTTTCTTT
1 ATTTATTTATTTTT-ATT
* *
62042659 CTTTCTTTATTTTTATT
1 ATTTATTTATTTTTATT
62042676 ATTTATTTATTTTTAT
1 ATTTATTTATTTTTAT
62042692 CTCTTCAACT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 16 0.57
18 12 0.43
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (17 bp):
ATTTATTTATTTTTATT
Found at i:62044763 original size:30 final size:30
Alignment explanation
Indices: 62044727--62044785 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
62044717 TGCATAGGCC
* *
62044727 ACATTATGAGAGCCATTTTAAGACCATGTG
1 ACATTATGAGAGCCAGTGTAAGACCATGTG
62044757 ACATTATGAGAGCCAGTGTAAGACCATGT
1 ACATTATGAGAGCCAGTGTAAGACCATGT
62044786 CTAGGAGACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (30 bp):
ACATTATGAGAGCCAGTGTAAGACCATGTG
Found at i:62044857 original size:46 final size:46
Alignment explanation
Indices: 62044807--62044938 Score: 141
Period size: 46 Copynumber: 2.9 Consensus size: 46
62044797 CATCGACATT
62044807 GAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCT-C
1 GAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CTAC
* *
62044853 GAGAC-A-TAAGCCAGTGTAAGACATGTCTGGGACATGTATCAGCTAC
1 GAGACGAGT--GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTAC
*
62044899 GAGA-G-GTG-TCAGTGTAAGACCATGTCTGTGACATGGCATC
1 GAGACGAGTGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
62044939 GACACAGATG
Statistics
Matches: 73, Mismatches: 5, Indels: 16
0.78 0.05 0.17
Matches are distributed among these distances:
44 11 0.15
45 16 0.22
46 46 0.63
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTAC
Found at i:62057954 original size:111 final size:111
Alignment explanation
Indices: 62057834--62058281 Score: 785
Period size: 111 Copynumber: 4.1 Consensus size: 111
62057824 ACTGTGATTA
**
62057834 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
62057899 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
*
62057945 TTGTTAATATTGTCTTTGAAAAACAATG---TATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
62058007 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
* * * *
62058053 TTGTTAATATTGTCTTTAAAAAACAATGATATATTGCATTCTCTAGGGACCAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
*
62058118 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATATTAGTT
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
*
62058164 TTGTGAATATTGTCTTTGAAAGACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
*
62058229 TTATTTTTATTTTTTATGAAAGAAAATTACTAGTTGTATGTTAGTT
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
62058275 TTGTGAA
1 TTGTGAA
62058282 CACGTTTATA
Statistics
Matches: 320, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
108 105 0.33
111 215 0.67
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (111 bp):
TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
Found at i:62058167 original size:219 final size:220
Alignment explanation
Indices: 62057834--62058281 Score: 781
Period size: 219 Copynumber: 2.0 Consensus size: 220
62057824 ACTGTGATTA
*
62057834 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTAAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
* *
62057899 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTTTTGTTAATATTGTCTTTGA
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATATTAGTTTTGTGAATATTGTCTTTGA
*
62057964 AAAACAATG-TATTGCATTCTCAAGCGACCAAAAAGCACTTAAGTTATTTTTATTTTTTGTGAAA
131 AAAACAATGATATTGCATTCTCAAGCGACCAAAAAGCACTTAAGTTATTTTTATTTTTTATGAAA
62058028 GAAAATTACTAGTTGTATGTTAGTT
196 GAAAATTACTAGTTGTATGTTAGTT
* * * **
62058053 TTGTTAATATTGTCTTTAAAAAACAATGATATATTGCATTCTCTAGGGACCAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTAAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
62058118 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATATTAGTTTTGTGAATATTGTCTTTGA
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATATTAGTTTTGTGAATATTGTCTTTGA
*
62058183 AAGACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAGTTATTTTTATTTTTTATGA
131 AAAACAATG--ATATTGCATTCTCAAGCGACCAAAAAGCACTTAAGTTATTTTTATTTTTTATGA
62058248 AAGAAAATTACTAGTTGTATGTTAGTT
194 AAGAAAATTACTAGTTGTATGTTAGTT
62058275 TTGTGAA
1 TTGTGAA
62058282 CACGTTTATA
Statistics
Matches: 215, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
219 130 0.60
222 85 0.40
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (220 bp):
TTGTGAATATTGTCTTTAAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATATTAGTTTTGTGAATATTGTCTTTGA
AAAACAATGATATTGCATTCTCAAGCGACCAAAAAGCACTTAAGTTATTTTTATTTTTTATGAAA
GAAAATTACTAGTTGTATGTTAGTT
Found at i:62058702 original size:16 final size:16
Alignment explanation
Indices: 62058669--62058706 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
62058659 ATTTTATTCA
*
62058669 AAATTTATAAAAATAT
1 AAATTAATAAAAATAT
62058685 AAATTAATATAAAA-AT
1 AAATTAATA-AAAATAT
62058701 AAATTA
1 AAATTA
62058707 TATTTTAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATTAATAAAAATAT
Found at i:62065112 original size:30 final size:30
Alignment explanation
Indices: 62065076--62065176 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
62065066 GACAAGATTG
* * *
62065076 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
62065106 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
62065134 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
62065163 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62065177 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:62067410 original size:96 final size:97
Alignment explanation
Indices: 62067246--62067626 Score: 489
Period size: 96 Copynumber: 3.9 Consensus size: 97
62067236 TAGGGTTATA
* * * **
62067246 TGAGCAAGTGTAAGACCATTTTTGGAACATGGAATCGACA-TTTATATGAGAGCTAGTGTAAGAC
1 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACGATATATGAGAGCTAGTGTAAGAC
* *
62067310 CATGTCTGGGACATGGTATTGGCCTCGATATG
66 CATGTCTGGGACATGGCATCGGCCTCGATATG
* * ** * * *
62067342 TGAGCCAGTGTAAGACCATGTTTGGAGCATGGCATCGACA-TTTATATAAAAGCTAGCGTAAGAC
1 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACGATATATGAGAGCTAGTGTAAGAC
* * *
62067406 CATGTTTGGGACATGGCATCAGCCTCGATATA
66 CATGTCTGGGACATGGCATCGGCCTCGATATG
* *
62067438 TGGGCTAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATATGAGAGCTAGTGTAAGA
1 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACA-CGATATATGAGAGCTAGTGTAAGA
*
62067503 CCATGTCTGGGACATGGCATCGACAC-CGATATATG
65 CCATGTCTGGGACATGGCATCGGC-CTCG--ATATG
* *
62067538 AGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGA
1 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACA-CGATATATGAGAGCTAGTGTAAGA
*
62067603 CCATGTCTGGAACATGGCATCGGC
65 CCATGTCTGGGACATGGCATCGGC
62067627 ATCTTACCCT
Statistics
Matches: 249, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
96 120 0.48
98 41 0.16
99 1 0.00
100 87 0.35
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (97 bp):
TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACGATATATGAGAGCTAGTGTAAGAC
CATGTCTGGGACATGGCATCGGCCTCGATATG
Found at i:62067518 original size:50 final size:50
Alignment explanation
Indices: 62067247--62067624 Score: 418
Period size: 48 Copynumber: 7.7 Consensus size: 50
62067237 AGGGTTATAT
* * * **
62067247 GAGCAAGTGTAAGACCATTTTTGGAACATGGAATCGACA--TTTATATGA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACACCGATATATGA
* * * * * *
62067295 GAGCTAGTGTAAGACCATGTCTGGGACATGGTATTGGC-CTCG--ATATGT
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAC-CGATATATGA
* * ** *
62067343 GAGCCAGTGTAAGACCATGTTTGGAGCATGGCATCGACA--TTTATATAA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACACCGATATATGA
* * *
62067391 AAGCTAGCGTAAGACCATGTTTGGGACATGGCATC-AGC-CTCGATATATG-
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGA-CAC-CGATATATGA
*
62067440 G-GCTAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATATGA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACACCGATATATGA
* *
62067489 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATATATGA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACACCGATATATGA
* *
62067539 GAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATATGA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACACCGATATATGA
* *
62067589 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCG
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCG
62067625 GCATCTTACC
Statistics
Matches: 276, Mismatches: 40, Indels: 26
0.81 0.12 0.08
Matches are distributed among these distances:
47 1 0.00
48 142 0.51
49 3 0.01
50 130 0.47
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (50 bp):
GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACACCGATATATGA
Found at i:62076289 original size:30 final size:30
Alignment explanation
Indices: 62076243--62076299 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
62076233 ATCCCGAGCC
62076243 TAGGGGCAAAAATGTAAATATGCAAAAGTT
1 TAGGGGCAAAAATGTAAATATGCAAAAGTT
* * * *
62076273 TAGGGGTAAAATTGTAATTTTGCAAAA
1 TAGGGGCAAAAATGTAAATATGCAAAA
62076300 ATTTGAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATGCAAAAGTT
Found at i:62076772 original size:46 final size:45
Alignment explanation
Indices: 62076722--62076897 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
62076712 TGGTTGAGCA
62076722 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
62076768 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
62076813 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
62076861 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62076898 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:62076878 original size:93 final size:93
Alignment explanation
Indices: 62076719--62076890 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
62076709 GGATGGTTGA
* *
62076719 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62076784 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
62076812 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62076877 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
62076891 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62080673 original size:48 final size:47
Alignment explanation
Indices: 62080591--62080873 Score: 205
Period size: 48 Copynumber: 5.9 Consensus size: 47
62080581 ATACGAGGGT
* * *
62080591 TATGTGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGATATTTG
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG-CATTTG
* * * * * *
62080639 TAGGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCG
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-GCATTTG
* * * *
62080686 ATATGTGAGCCAGTGTAGGACCATGTTTGGAACATGGCATTGGCATTTA
1 -TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCA-TCGCATTTG
* * * * * * *
62080735 AATGAGAGCTAGCGTAAAACCATGTTTGGGACATGGCATCAGC-CTCG
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-GCATTTG
* * * * *
62080782 ATATGTAG-GCTAGTGTATGACCATCTTTGGAACATGGCATCAGCACTGATA
1 -TATG-AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-GCA-T-TTG
*
62080833 TATGAGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCG
1 TATGAGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCG
62080874 GCATCTTACC
Statistics
Matches: 179, Mismatches: 44, Indels: 23
0.73 0.18 0.09
Matches are distributed among these distances:
47 4 0.02
48 135 0.75
49 8 0.04
50 29 0.16
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGCATTTG
Found at i:62080757 original size:96 final size:96
Alignment explanation
Indices: 62080591--62080875 Score: 365
Period size: 96 Copynumber: 2.9 Consensus size: 96
62080581 ATACGAGGGT
** * *
62080591 TATGTGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGATATTTGTAGGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
62080656 GACCATGTCTGGGACATGGCATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * * *
62080687 TATGTGAGCCAGTGTAGGACCATGTTTGGAACATGGCATTGGCATTTAAATGAGAGCTAGCGTAA
1 TATGTGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
* * *
62080752 AACCATGTTTGGGACATGGCATCAGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * * * *
62080783 TATGT-AGGCTAGTGTATGACCATCTTTGGAACATGGCATCAGCACTGATATATGAGAGCCAGTG
1 TATGTGA-GCCAGTGTAAGACCATATTTGGAACATGGCATCGGCA-T-TTATATGAGAGCTAGTG
*
62080847 TAAGACCATGTCTAGGACATGGCATCGGC
63 TAAGACCATGTCTGGGACATGGCATCGGC
62080876 ATCTTACCCT
Statistics
Matches: 161, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
95 1 0.01
96 121 0.75
97 1 0.01
98 38 0.24
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:62091994 original size:93 final size:93
Alignment explanation
Indices: 62091835--62092004 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
62091825 GGATGGTTGA
* * *
62091835 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCTCCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
62091900 TGAGTCTGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
62091928 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
62091993 TGAGTCCGAGTT
66 TGAGTCCGAGTT
62092005 CACTTAGGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:62092006 original size:46 final size:46
Alignment explanation
Indices: 62091839--62092010 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
62091829 GGTTGAGCAT
* * * *
62091839 CCGAACTCGTTGAGTTGAGTCCGAGTTCTCCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
62091885 CCGAACTCGTTGAGTTGAGTCTGAG-T---TTGTGAGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---GC
62091930 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
62091978 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62092011 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
45 2 0.02
46 56 0.53
47 24 0.23
48 3 0.03
50 4 0.04
51 7 0.07
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:62097495 original size:24 final size:24
Alignment explanation
Indices: 62097463--62097608 Score: 251
Period size: 24 Copynumber: 6.2 Consensus size: 24
62097453 GCCTAGCCTT
*
62097463 TTTTAATAACTGGGGCAAAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
62097487 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
62097511 -TTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
*
62097534 TTTTGATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
*
62097558 TTTTGATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
62097582 -TTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
62097605 TTTT
1 TTTT
62097609 GCACTTCCTC
Statistics
Matches: 117, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
23 45 0.38
24 72 0.62
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
TTTTAATAACTGGGGCATAAGCCC
Found at i:62097556 original size:71 final size:71
Alignment explanation
Indices: 62097463--62097609 Score: 267
Period size: 71 Copynumber: 2.1 Consensus size: 71
62097453 GCCTAGCCTT
*
62097463 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
1 TTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
62097528 AAGCCC
66 AAGCCC
* *
62097534 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
1 TTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
62097599 AAGCCC
66 AAGCCC
62097605 TTTTG
1 TTTTG
62097610 CACTTCCTCC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (71 bp):
TTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
AAGCCC
Found at i:62097609 original size:47 final size:48
Alignment explanation
Indices: 62097463--62097608 Score: 251
Period size: 47 Copynumber: 3.1 Consensus size: 48
62097453 GCCTAGCCTT
*
62097463 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
62097511 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
62097558 TTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
62097605 TTTT
1 TTTT
62097609 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
47 71 0.76
48 22 0.24
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (48 bp):
TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:62097749 original size:25 final size:25
Alignment explanation
Indices: 62097721--62097768 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62097711 ATATATAAAC
* * *
62097721 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
62097746 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
62097769 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:62098914 original size:18 final size:17
Alignment explanation
Indices: 62098887--62098920 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
62098877 TAGGGAAGAA
62098887 AATAAGAAGAGAAAACT
1 AATAAGAAGAGAAAACT
62098904 AATACAGAAGAGAAAAC
1 AATA-AGAAGAGAAAAC
62098921 GACATAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.09, G:0.18, T:0.09
Consensus pattern (17 bp):
AATAAGAAGAGAAAACT
Found at i:62106310 original size:14 final size:14
Alignment explanation
Indices: 62106293--62106323 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
62106283 TAAACACATG
*
62106293 AACAAAAACATACA
1 AACAAAAACACACA
62106307 AACAAAAACACACA
1 AACAAAAACACACA
62106321 AAC
1 AAC
62106324 TAATCCTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.26, G:0.00, T:0.03
Consensus pattern (14 bp):
AACAAAAACACACA
Found at i:62121954 original size:40 final size:39
Alignment explanation
Indices: 62121789--62121972 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
62121779 AAATTGAATG
* * *
62121789 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
62121829 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
62121869 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
62121909 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
62121948 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62121973 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:62121997 original size:80 final size:81
Alignment explanation
Indices: 62121829--62122017 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
62121819 GCTGGAAATT
* * * *
62121829 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
62121894 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
62121910 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
62121973 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
62121989 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
62122018 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:62125779 original size:15 final size:15
Alignment explanation
Indices: 62125759--62125788 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
62125749 TGACTTACCT
62125759 CACTTTCACCTTTGC
1 CACTTTCACCTTTGC
*
62125774 CACTTTCACTTTTGC
1 CACTTTCACCTTTGC
62125789 TCACCACAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.37, G:0.07, T:0.43
Consensus pattern (15 bp):
CACTTTCACCTTTGC
Found at i:62132894 original size:98 final size:96
Alignment explanation
Indices: 62132785--62133001 Score: 375
Period size: 96 Copynumber: 2.3 Consensus size: 96
62132775 AGTCTGTACA
*
62132785 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATA
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTATATATA
62132850 TGTGATAAGGCCAAATGGCCAATGTGATGAATG
64 TGTGATAAGGCCAAATGGCCAATGTGATGAATG
62132883 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTATATATATG
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTATATATATG
**
62132948 TGATAAGGCTTAATGGCCAATGTGATGAATG
66 TGATAAGGCCAAATGGCCAATGTGATGAATG
62132979 TGAAAGTGTATA-A-ATGTGATAAG
1 TGAAAGTGTATATATATGTGATAAG
62133002 TCCCGAAGGG
Statistics
Matches: 116, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
94 10 0.09
95 1 0.01
96 51 0.44
97 3 0.03
98 51 0.44
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (96 bp):
TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTATATATATG
TGATAAGGCCAAATGGCCAATGTGATGAATG
Found at i:62132941 original size:47 final size:49
Alignment explanation
Indices: 62132785--62133001 Score: 361
Period size: 49 Copynumber: 4.5 Consensus size: 49
62132775 AGTCTGTACA
*
62132785 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
* *
62132834 TGAAAGTGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
*
62132883 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
*
62132932 TG-AAG-GTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
62132979 TGAAAGTGTATA-A-ATGTGATAAG
1 TGAAAGTGTATATATATGTGATAAG
62133002 TCCCGAAGGG
Statistics
Matches: 158, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 52 0.33
48 7 0.04
49 99 0.63
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (49 bp):
TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
Found at i:62134218 original size:31 final size:31
Alignment explanation
Indices: 62134183--62134250 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
62134173 AAGTGTATAT
62134183 ATGTGATAAGGCCGAATGACCAATGTGATGA
1 ATGTGATAAGGCCGAATGACCAATGTGATGA
* * *
62134214 ATGTGATAGGGCCGAGTGGCCAATGTGATGA
1 ATGTGATAAGGCCGAATGACCAATGTGATGA
62134245 ATGTGA
1 ATGTGA
62134251 AAGTATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.31, C:0.12, G:0.34, T:0.24
Consensus pattern (31 bp):
ATGTGATAAGGCCGAATGACCAATGTGATGA
Found at i:62134265 original size:78 final size:78
Alignment explanation
Indices: 62134136--62134297 Score: 261
Period size: 78 Copynumber: 2.1 Consensus size: 78
62134126 TACAATGTAT
*
62134136 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATG
*
62134201 ACCAATGTGATGA
66 ACCAACGTGATGA
* * * *
62134214 ATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGAGTG
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATG
*
62134279 GCCAACGTGATGA
66 ACCAACGTGATGA
62134292 ATGTGA
1 ATGTGA
62134298 AAGTGTATAT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.25
Consensus pattern (78 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATG
ACCAACGTGATGA
Found at i:62134372 original size:125 final size:125
Alignment explanation
Indices: 62134133--62134488 Score: 325
Period size: 141 Copynumber: 2.7 Consensus size: 125
62134123 TGTTACAATG
*
62134133 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * * * * *
62134198 ATGACCAATGTGATGAATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
66 ATGACCAACGTGATGAATGTGAAAGGGCAGAATGGACAATGTGACGAATGTGAAAGTATA
* * * * *
62134258 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGGTCGT
1 TATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * * *
62134323 GTGACCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
66 ATGACCAACGTGATGAA--T----GTG-A-A-A---G----GGCAGAATGGACAATGTGACGAAT
*
62134388 GTGAAAGTGTA
115 GTGAAAGTATA
* * * * * * *
62134399 TATATGAGATAAGACCTAATGGGCAATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCTGA
1 TATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * *
62134464 ATGGCCAATGTGATGGATGTGAAAG
66 ATGACCAACGTGATGAATGTGAAAG
62134489 TGTATAAATG
Statistics
Matches: 188, Mismatches: 27, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
125 74 0.39
127 1 0.01
129 1 0.01
131 3 0.02
132 2 0.01
133 1 0.01
134 2 0.01
135 3 0.02
137 1 0.01
139 1 0.01
141 99 0.53
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (125 bp):
TATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGACCAACGTGATGAATGTGAAAGGGCAGAATGGACAATGTGACGAATGTGAAAGTATA
Found at i:62134504 original size:47 final size:47
Alignment explanation
Indices: 62134214--62134505 Score: 404
Period size: 47 Copynumber: 6.2 Consensus size: 47
62134204 AATGTGATGA
* * *
62134214 ATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
62134261 ATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * ** * *
62134308 ATGTGATAGGGTCGTGTGACCAACGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
62134355 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * *
62134402 ATGAGATAAGACCTAATGGGCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * *
62134449 ATGCGATAAGGCTGAATGGCCAATGTGATGGATGTGAAAGTGTATAA
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
62134496 ATGTGATAAG
1 ATGTGATAAG
62134506 TCTCGAAGGG
Statistics
Matches: 222, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 222 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
Found at i:62139057 original size:28 final size:27
Alignment explanation
Indices: 62138994--62139063 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
62138984 ATAGTGAGTC
62138994 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
62139021 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
62139049 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62139064 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:62147086 original size:28 final size:27
Alignment explanation
Indices: 62147023--62147092 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
62147013 ATAGTGAGTC
62147023 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
62147050 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
62147078 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62147093 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:62148773 original size:50 final size:50
Alignment explanation
Indices: 62148660--62148940 Score: 251
Period size: 50 Copynumber: 5.6 Consensus size: 50
62148650 CTGGTACGCA
** * *
62148660 TAGTAGCCTACACTTAGTACTACACATGCAACC-AACAATC-CAGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACCATCTGA-TACACG
* * *
62148709 TAGTAACTTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACCATCTGATACACG
* * * * * *** * * * *
62148759 TAGTAGCCTGCACTTAGTACTACAGACGTGATCGAAGTTGTCGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAA-CCATCTGATACACG
* * * *
62148810 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACCATCTGATACACG
* * * * *
62148860 TAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACATCTTAAACACA
1 TAGTAGCCTACACTTAGTACTACACATGTGACCT-AACCATCTGATACACG
* *
62148911 TAGTAGCCTACACATAGTACAACACATGTG
1 TAGTAGCCTACACTTAGTACTACACATGTG
62148941 TTCTCACAAT
Statistics
Matches: 186, Mismatches: 42, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
49 28 0.15
50 82 0.44
51 76 0.41
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACATGTGACCTAACCATCTGATACACG
Found at i:62148913 original size:101 final size:98
Alignment explanation
Indices: 62148646--62148938 Score: 289
Period size: 101 Copynumber: 2.9 Consensus size: 98
62148636 GCAACCGAAG
* * * ** * *
62148646 CTATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCAACCAACAATCCAGTACACGTA
1 CTATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAAAAATCCA-TACACATA
* * *
62148711 GTAACTTGCACTTAGTACTACACATGTGACCTAA
65 GTAGCCTGCACTTAGTACTACACATGCGACCTAA
* * * * * *** ** *
62148745 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACAGACGTGATCGAAGTTGTCGGGTACGCA
1 CTATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGA-CCAA-AAATC-CATACACA
62148810 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
63 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
* *
62148846 CTATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACATCTTAAACACA
1 CTATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACC-AAAA-ATC-CATACACA
* * *
62148911 TAGTAGCCTACACATAGTACAACACATG
63 TAGTAGCCTGCACTTAGTACTACACATG
62148939 TGTTCTCACA
Statistics
Matches: 153, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
99 36 0.24
100 4 0.03
101 113 0.74
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (98 bp):
CTATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAAAAATCCATACACATAG
TAGCCTGCACTTAGTACTACACATGCGACCTAA
Found at i:62153324 original size:40 final size:40
Alignment explanation
Indices: 62153247--62153464 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
62153237 AAACCAAGTA
* * *
62153247 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
62153286 CCTTCGGGACTTAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
62153326 CCTTCGGGACTTAGCCCGAAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62153366 CCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
62153406 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62153446 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62153465 TTATCATCCG
Statistics
Matches: 159, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 13 0.08
40 146 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62153379 original size:80 final size:80
Alignment explanation
Indices: 62153273--62153468 Score: 338
Period size: 80 Copynumber: 2.5 Consensus size: 80
62153263 GGATATAGCT
* *
62153273 ACTCGCTCAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
62153338 AGCCCGAAAATAGTC
66 AGCCCGAAAATAGTC
* *
62153353 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
*
62153418 AGCCCGGAAATAGTC
66 AGCCCGAAAATAGTC
*
62153433 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
62153469 CATCCGAATA
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 109 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGAAAATAGTC
Found at i:62158688 original size:49 final size:47
Alignment explanation
Indices: 62158513--62158735 Score: 293
Period size: 47 Copynumber: 4.7 Consensus size: 47
62158503 CCCTTCGGGA
* * * * * *
62158513 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62158560 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62158607 CTTATCACACATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62158654 CTTATTACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62158703 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
62158736 GCGTAGAATC
Statistics
Matches: 156, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
47 92 0.59
48 2 0.01
49 62 0.40
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62158696 original size:96 final size:94
Alignment explanation
Indices: 62158513--62158735 Score: 293
Period size: 96 Copynumber: 2.3 Consensus size: 94
62158503 CCCTTCGGGA
* * * * *
62158513 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
62158578 TTTCACATTCATCACATTGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * * *
62158607 CTTATCACACATATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTA-T-CACATATATAC
62158672 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
62158703 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
62158736 GCGTAGAATC
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
94 42 0.38
95 1 0.01
96 49 0.45
98 18 0.16
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:62162217 original size:40 final size:40
Alignment explanation
Indices: 62162172--62162338 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
62162162 CGGAATATAA
62162172 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62162212 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
62162252 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
62162292 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
62162331 CCGGATAT
1 CCGGATAT
62162339 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62170239 original size:40 final size:40
Alignment explanation
Indices: 62170194--62170361 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
62170184 CGGAATATAA
62170194 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62170234 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
62170274 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
62170314 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
62170354 CCGGATAT
1 CCGGATAT
62170362 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62175641 original size:40 final size:40
Alignment explanation
Indices: 62175579--62175795 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
62175569 AAGCCAAGTA
* * * *
62175579 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
62175618 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62175658 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62175698 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62175738 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62175778 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62175796 TTATCATCCA
Statistics
Matches: 169, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 25 0.15
40 144 0.85
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62178027 original size:28 final size:29
Alignment explanation
Indices: 62177932--62178062 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
62177922 TACTCGATTT
** * *
62177932 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
62177961 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
62177990 CGCACACTTAGTGCCATATA-TTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
62178018 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
62178047 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62178063 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
28 27 0.32
29 58 0.68
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:62182981 original size:40 final size:40
Alignment explanation
Indices: 62182922--62183063 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
62182912 AAATTGAATG
* * *
62182922 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
62182962 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
62183002 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
62183042 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
62183064 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:62183064 original size:40 final size:39
Alignment explanation
Indices: 62182961--62183089 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
62182951 TGCTGGAAAT
* * *
62182961 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
62183001 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
62183041 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
62183081 TATATCCGG
1 TATATCCGG
62183090 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:62186242 original size:15 final size:15
Alignment explanation
Indices: 62186222--62186296 Score: 80
Period size: 15 Copynumber: 5.0 Consensus size: 15
62186212 TACGGTATCG
*
62186222 TATCTTGGATTTCTC
1 TATCTTGGATTTCTT
*
62186237 TATCTTGGATCTCTT
1 TATCTTGGATTTCTT
*
62186252 TAT-TCTGGGTTTCTT
1 TATCT-TGGATTTCTT
* *
62186267 CATTTTGGATTTCTT
1 TATCTTGGATTTCTT
*
62186282 TATCTTGGTTTTCTT
1 TATCTTGGATTTCTT
62186297 ACAATCCCTA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
14 1 0.02
15 47 0.96
16 1 0.02
ACGTcount: A:0.11, C:0.16, G:0.15, T:0.59
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:62194690 original size:40 final size:40
Alignment explanation
Indices: 62194632--62194783 Score: 254
Period size: 40 Copynumber: 3.8 Consensus size: 40
62194622 AGTGACTAGT
62194632 TCCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
62194671 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62194711 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
* *
62194752 -CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
62194784 AGCTATATCC
Statistics
Matches: 108, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
39 7 0.06
40 99 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62194733 original size:80 final size:79
Alignment explanation
Indices: 62194594--62194783 Score: 253
Period size: 80 Copynumber: 2.4 Consensus size: 79
62194584 TTTGGATGAT
* * * * **
62194594 AACCGGGCTAAGTCCC---GGCATCTGCGCTAGTGACTAGTTCCGGGCAAGTCCCGAAGGCATTT
1 AACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGCAAGTCCCGAAGGCATTT
62194656 GTGCGAGTTACT-A
66 GTGCGAGTTACTCA
*
62194669 AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAT
1 AA-CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGC-AAGTCCCGAAGGCAT
*
62194734 TTGTGCGAGTTACTCT
64 TTGTGCGAGTTACTCA
*
62194750 AACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 AACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
62194784 AGCTATATCC
Statistics
Matches: 100, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
75 2 0.02
76 14 0.14
79 23 0.23
80 59 0.59
81 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.24
Consensus pattern (79 bp):
AACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGCAAGTCCCGAAGGCATTT
GTGCGAGTTACTCA
Found at i:62202746 original size:40 final size:40
Alignment explanation
Indices: 62202647--62202877 Score: 304
Period size: 40 Copynumber: 5.8 Consensus size: 40
62202637 TGGATGATAA
* * * * **
62202647 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
62202687 CCGGGC-AAGTACCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
62202726 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
62202766 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
62202806 ACGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
62202846 CTGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
62202878 AGCTATATCC
Statistics
Matches: 169, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 32 0.19
40 135 0.80
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:62207948 original size:30 final size:30
Alignment explanation
Indices: 62207914--62207974 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
62207904 TCCTTAACTC
62207914 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
62207944 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
62207974 A
1 A
62207975 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:62211118 original size:40 final size:39
Alignment explanation
Indices: 62211073--62211280 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
62211063 CGGAATACAA
*
62211073 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
62211113 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
62211153 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
62211193 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
62211233 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
62211273 CCGGATAT
1 CCGGATAT
62211281 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:62211213 original size:80 final size:80
Alignment explanation
Indices: 62211073--62211279 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
62211063 CGGAATACAA
* * *
62211073 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
62211137 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
62211153 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
62211217 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
62211233 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
62211280 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:62213584 original size:40 final size:40
Alignment explanation
Indices: 62213525--62213666 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
62213515 AAATTGAATG
* * *
62213525 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
62213565 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
62213605 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
62213645 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
62213667 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:62213690 original size:40 final size:39
Alignment explanation
Indices: 62213563--62213692 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
62213553 ATGCTGGAAA
* * *
62213563 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
62213604 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
62213642 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
62213683 TTATATCCGG
1 TTATATCCGG
62213693 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:62224160 original size:17 final size:19
Alignment explanation
Indices: 62224118--62224161 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
62224108 ATGAAATTTT
*
62224118 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
62224137 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
62224155 AA-TATTA
1 AATTATTA
62224162 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:62224274 original size:15 final size:15
Alignment explanation
Indices: 62224256--62224286 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
62224246 ATATTTATAA
62224256 AATTATTATTATTAT
1 AATTATTATTATTAT
62224271 AATTATTATTATTAT
1 AATTATTATTATTAT
62224286 A
1 A
62224287 TAGGAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:62225009 original size:11 final size:12
Alignment explanation
Indices: 62224991--62225019 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
62224981 CTTCTCCTAT
62224991 TCTCTTTTCTTC
1 TCTCTTTTCTTC
62225003 T-TCTTTTCTTC
1 TCTCTTTTCTTC
62225014 TCTCTT
1 TCTCTT
62225020 CAACTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (12 bp):
TCTCTTTTCTTC
Found at i:62227502 original size:16 final size:17
Alignment explanation
Indices: 62227470--62227502 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
62227460 AATCAAGAAG
62227470 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
62227488 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
62227503 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:62229976 original size:18 final size:18
Alignment explanation
Indices: 62229945--62230011 Score: 55
Period size: 18 Copynumber: 3.7 Consensus size: 18
62229935 ATTCATTCTC
* *
62229945 TCTTCTCCTATTCTCTTT
1 TCTTCTTCTTTTCTCTTT
* *
62229963 TCTTCTTCTTTTCTCCTC
1 TCTTCTTCTTTTCTCTTT
** *
62229981 TCTTCAACTATTT-TCTCT
1 TCTTCTTCT-TTTCTCTTT
62229999 TCTTCTTCTTTTC
1 TCTTCTTCTTTTC
62230012 CTCTATAGCT
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
17 3 0.08
18 30 0.83
19 3 0.08
ACGTcount: A:0.06, C:0.33, G:0.00, T:0.61
Consensus pattern (18 bp):
TCTTCTTCTTTTCTCTTT
Found at i:62229984 original size:36 final size:36
Alignment explanation
Indices: 62229942--62230011 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
62229932 AGGATTCATT
** *
62229942 CTCTCTTCTCCTATTCTCTTTTCTTCTTCTTTTCTC
1 CTCTCTTCAACTATTCTCTCTTCTTCTTCTTTTCTC
*
62229978 CTCTCTTCAACTATTTTCTCTTCTTCTTCTTTTC
1 CTCTCTTCAACTATTCTCTCTTCTTCTTCTTTTC
62230012 CTCTATAGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.06, C:0.34, G:0.00, T:0.60
Consensus pattern (36 bp):
CTCTCTTCAACTATTCTCTCTTCTTCTTCTTTTCTC
Found at i:62230963 original size:20 final size:21
Alignment explanation
Indices: 62230925--62230963 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
62230915 GCACTTCGGT
*
62230925 AATTGGGCGTCAATAGGCTAA
1 AATTGGGCGCCAATAGGCTAA
*
62230946 AATTGGGC-CCAATGGGCT
1 AATTGGGCGCCAATAGGCT
62230964 TATGGGTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (21 bp):
AATTGGGCGCCAATAGGCTAA
Found at i:62236190 original size:56 final size:56
Alignment explanation
Indices: 62236130--62236398 Score: 378
Period size: 56 Copynumber: 4.8 Consensus size: 56
62236120 CCCCAGACAG
* * * * *
62236130 GGTCTTACTCGTACACATATATCAGAGCCATATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
* * *
62236186 GGTCTTACTCGAACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
* * * *
62236242 GGTCTTACTTGCACATATATATCGGAGTCATATATCGATGCCAACGCATTAAACGT
1 GGTCTTACTCGCACATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
*
62236298 GGACTTACTCGCACATATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCAC--ATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
*
62236356 GGACTTACTCGCACATATATATC-GAAGTCACATATCGATGCCA
1 GGTCTTACTCGCACATATATATCAG-AGTCACATATCGATGCCA
62236399 CATATGCTTC
Statistics
Matches: 195, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
55 1 0.01
56 141 0.72
58 53 0.27
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
Found at i:62236363 original size:114 final size:112
Alignment explanation
Indices: 62236133--62236398 Score: 388
Period size: 114 Copynumber: 2.4 Consensus size: 112
62236123 CAGACAGGGT
* * * * * *
62236133 CTTACTCGTACACATATATCAGAGCCATATATCGATGCCAACGTATTAAACATGGTCTTACTCGA
1 CTTACTCGCACATATATATCGGAGTCATATATCGATGCCAACGCATTAAACATGGACTTACTCGA
* *
62236198 ACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGTGGT
66 ACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
* *
62236245 CTTACTTGCACATATATATCGGAGTCATATATCGATGCCAACGCATTAAACGTGGACTTACTCGC
1 CTTACTCGCACATATATATCGGAGTCATATATCGATGCCAACGCATTAAACATGGACTTACTCG-
* *
62236310 ACATATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
65 A-ACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
* *
62236359 CTTACTCGCACATATATATCGAAGTCACATATCGATGCCA
1 CTTACTCGCACATATATATCGGAGTCATATATCGATGCCA
62236399 CATATGCTTC
Statistics
Matches: 137, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
112 56 0.41
113 1 0.01
114 80 0.58
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (112 bp):
CTTACTCGCACATATATATCGGAGTCATATATCGATGCCAACGCATTAAACATGGACTTACTCGA
ACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
Found at i:62238635 original size:34 final size:34
Alignment explanation
Indices: 62238592--62238660 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
62238582 AAACATAGAT
62238592 TCTCAGCACATATTTTTCTTTTACTAAAAGTTCA
1 TCTCAGCACATATTTTTCTTTTACTAAAAGTTCA
62238626 TCTCAGCACATATTTTTCTTTTACTAAAAGTTCA
1 TCTCAGCACATATTTTTCTTTTACTAAAAGTTCA
62238660 T
1 T
62238661 GCGATGCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.20, G:0.06, T:0.45
Consensus pattern (34 bp):
TCTCAGCACATATTTTTCTTTTACTAAAAGTTCA
Found at i:62239216 original size:39 final size:39
Alignment explanation
Indices: 62239163--62239325 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
62239153 GGACTTTAGC
* * * *
62239163 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
62239202 CCGAATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
62239241 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAGGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
62239280 CTGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
62239319 CCGGATA
1 CCGGATA
62239326 CACATCAAAT
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:62239227 original size:78 final size:79
Alignment explanation
Indices: 62239145--62239323 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 79
62239135 ACCAGCTCGA
* * * * *
62239145 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGAATA
1 AGCCTGCGGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGAATA
62239209 TAATTCCAGCACAT
66 TAATTCCAGCACAT
* * * * * *
62239223 AGCCTGC-GGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGTGGACCCTAGGTCTGGATA
1 AGCCTGCGGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGAATA
62239287 TAATTCCAGCACAT
66 TAATTCCAGCACAT
*
62239301 AGCCTGC-GGACCCTAAGTCCGGA
1 AGCCTGCGGGACCCTAAGCCCGGA
62239324 TACACATCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 3 0.03
78 86 0.97
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (79 bp):
AGCCTGCGGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGAATA
TAATTCCAGCACAT
Found at i:62245980 original size:39 final size:40
Alignment explanation
Indices: 62245931--62246118 Score: 156
Period size: 39 Copynumber: 4.8 Consensus size: 40
62245921 TAAACCCAGT
* * *
62245931 ATAATACCAGCTCGAAGCCTGCGGGA-CTTTAGCCCGGAC
1 ATAATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGAC
* * * *
62245970 ATATTTCCAGCACGTAGCCTGC-GGACCTTAAGTCCGGAT
1 ATAATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGAC
* * * * *
62246009 ATAATTCCAGCACAAAGCCTGC-GGACCCTAAGTCCGAAT
1 ATAATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGAC
* * * *
62246048 ATAATTCCAGCAC-ATAGCCTGC-GGACCCTAGGTCCGGAT
1 ATAATTCCAGCACGA-AGCCTGCGGGACCTTAAGCCCGGAC
*
62246087 ATAATTCCAGCAC-ATAGCCTGC-GGACCCTAAG
1 ATAATTCCAGCACGA-AGCCTGCGGGACCTTAAG
62246119 TGCGGATACA
Statistics
Matches: 132, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 4 0.03
39 128 0.97
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (40 bp):
ATAATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGAC
Found at i:62246019 original size:78 final size:78
Alignment explanation
Indices: 62245930--62246118 Score: 231
Period size: 78 Copynumber: 2.4 Consensus size: 78
62245920 TTAAACCCAG
* * * * * * *
62245930 TATAATACCAGCTCGAAGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCGG
1 TATAATTCCAGCAC-AAGCCTGCGGGACCCTAAGCCCGAACATAATTCCAGCACATAGCCTGCGG
*
62245994 ACCTTAAGTCCGGA
65 ACCCTAAGTCCGGA
* *
62246008 TATAATTCCAGCACAAAGCCTGC-GGACCCTAAGTCCGAATATAATTCCAGCACATAGCCTGCGG
1 TATAATTCCAGCAC-AAGCCTGCGGGACCCTAAGCCCGAACATAATTCCAGCACATAGCCTGCGG
*
62246072 ACCCTAGGTCCGGA
65 ACCCTAAGTCCGGA
62246086 TATAATTCCAGCACATAGCCTGC-GGACCCTAAG
1 TATAATTCCAGCACA-AGCCTGCGGGACCCTAAG
62246119 TGCGGATACA
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
77 4 0.04
78 93 0.96
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (78 bp):
TATAATTCCAGCACAAGCCTGCGGGACCCTAAGCCCGAACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCCGGA
Found at i:62246125 original size:39 final size:39
Alignment explanation
Indices: 62245964--62246126 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
62245954 GGACTTTAGC
* * * *
62245964 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
62246003 CCGGATATAATTCCAGCACAAAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
62246042 CCGAATATAATTCCAGCACATAGCCTGCGGACCCTAGGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
62246081 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
62246120 GCGGATA
1 CCGGATA
62246127 CACATCAAAT
Statistics
Matches: 113, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:62258518 original size:35 final size:35
Alignment explanation
Indices: 62258472--62258538 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
62258462 TTATTGTTAT
62258472 TCACCTACATCATAATCCATATTACCATCTTTCTA
1 TCACCTACATCATAATCCATATTACCATCTTTCTA
*
62258507 TCACCTACATCATAATCTATATTACCATCTTT
1 TCACCTACATCATAATCCATATTACCATCTTT
62258539 TTAAGTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.31, C:0.30, G:0.00, T:0.39
Consensus pattern (35 bp):
TCACCTACATCATAATCCATATTACCATCTTTCTA
Found at i:62262410 original size:46 final size:48
Alignment explanation
Indices: 62262358--62262618 Score: 233
Period size: 49 Copynumber: 5.5 Consensus size: 48
62262348 AGAGCTAGTC
*
62262358 TAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGTAAGCCGGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTAAGCCAGTG
*
62262404 TAAGA-CATGTCTGGGACAT-GCATCAG-CTACGAGATGT--GTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCT-CGAGATGTAAGCCAGTG
* * * * *
62262448 TAAGACCATGTCTGGG-GATGGCATCAGCATGGATATGTGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGT-A-AGCCAGTG
* * *
62262497 TAAGACCATGTCTGGGACATGGCATCAGCCTC-A-ATTTTGATAGTCATTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCTCGAGA-TGT-A-AGCCAGTG
* * * *
62262546 TAAGACCATGTCTGGGATATGGCATC-GACTTGGAAGATG--AGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAG-CCTCG-AGATGTAAGCCAGTG
62262593 TAAGACCATGTCTGGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
62262619 GACATTATAC
Statistics
Matches: 177, Mismatches: 24, Indels: 27
0.78 0.11 0.12
Matches are distributed among these distances:
44 12 0.07
45 25 0.14
46 35 0.20
47 30 0.17
48 2 0.01
49 58 0.33
50 12 0.07
51 2 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTAAGCCAGTG
Found at i:62262601 original size:96 final size:94
Alignment explanation
Indices: 62262358--62262618 Score: 263
Period size: 96 Copynumber: 2.8 Consensus size: 94
62262348 AGAGCTAGTC
* * * * **
62262358 TAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGTA-AGCCGGTGTAAGA-CATGTCTGGG
1 TAAGACCATGTCTGGG-GATGGCATCAGCATGGATATGTAGAGCTAGTGTAAGACCATGTCTGGG
*
62262419 ACAT-GCATCAGCTACGAGATGTGTCAGTG
65 ACATGGCATCAGCTACAAGATGTGTCAGTG
62262448 TAAGACCATGTCTGGGGATGGCATCAGCATGGATATGTGAGAGCTAGTGTAAGACCATGTCTGGG
1 TAAGACCATGTCTGGGGATGGCATCAGCATGGATATGT-AGAGCTAGTGTAAGACCATGTCTGGG
** *
62262513 ACATGGCATCAGCCT-CAATTTTGATAGTCATTG
65 ACATGGCATCAG-CTACAA-GATG-T-GTCAGTG
* *
62262546 TAAGACCATGTCTGGGATATGGCATC-GACTTGGA-A-G-ATGAGCTAGTGTAAGACCATGTCTG
1 TAAGACCATGTCTGGG-GATGGCATCAG-CATGGATATGTA-GAGCTAGTGTAAGACCATGTCTG
62262607 GGACATGGCATC
63 GGACATGGCATC
62262619 GACATTATAC
Statistics
Matches: 146, Mismatches: 12, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
90 7 0.05
91 25 0.17
92 1 0.01
93 11 0.08
94 14 0.10
95 10 0.07
96 39 0.27
97 2 0.01
98 24 0.16
99 13 0.09
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (94 bp):
TAAGACCATGTCTGGGGATGGCATCAGCATGGATATGTAGAGCTAGTGTAAGACCATGTCTGGGA
CATGGCATCAGCTACAAGATGTGTCAGTG
Found at i:62262621 original size:47 final size:47
Alignment explanation
Indices: 62262310--62262618 Score: 216
Period size: 49 Copynumber: 6.6 Consensus size: 47
62262300 AGAGCCACTA
* ** *
62262310 TAAGACCATGTCTGGAACATGGCATCAATATTGAGACA-A-GAGCTAGTC
1 TAAGACCATGTCTGGGACATGGCATC-AGCTTG-GA-AGATGAGCTAGTG
* * **
62262358 TAAGA-CATGTCTGGGACAT-GCATCAGCCTCG-AGATGTAAGCCGGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCTTGGAAGATG--AGCTAGTG
** *
62262404 TAAGA-CATGTCTGGGACAT-GCATCAGCTACG-AGATGTG-TCAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCTTGGAAGATGAGCT-AGTG
* *
62262448 TAAGACCATGTCTGGG-GATGGCATCAGCATGGATATG-TGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCTTGGA-A-GAT--GAGCTAGTG
* * *
62262497 TAAGACCATGTCTGGGACATGGCATCAGCCT-CAATTTTGAT-AG-TCATTG
1 TAAGACCATGTCTGGGACATGGCATCAGCTTGGAA----GATGAGCT-AGTG
*
62262546 TAAGACCATGTCTGGGATATGGCATC-GACTTGGAAGATGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAG-CTTGGAAGATGAGCTAGTG
62262593 TAAGACCATGTCTGGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
62262619 GACATTATAC
Statistics
Matches: 211, Mismatches: 27, Indels: 47
0.74 0.09 0.16
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 13 0.06
45 21 0.10
46 47 0.22
47 45 0.21
48 10 0.05
49 55 0.26
50 15 0.07
51 2 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATCAGCTTGGAAGATGAGCTAGTG
Found at i:62263794 original size:21 final size:20
Alignment explanation
Indices: 62263770--62263808 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
62263760 TGTTCAAGTC
62263770 CCACACGGGCGTGTTGCCTAT
1 CCACACGGGCGTG-TGCCTAT
*
62263791 CCACATGGGCGTGTGCCT
1 CCACACGGGCGTGTGCCT
62263809 TGTTTCAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.13, C:0.33, G:0.31, T:0.23
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCTAT
Found at i:62267210 original size:30 final size:30
Alignment explanation
Indices: 62267151--62267210 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
62267141 ATTTACGATC
* **
62267151 CTAAGGGTAAAATAGTAATTTTGTGAAAAT
1 CTAAGGGCAAAATAGTAATTTTGCCAAAAT
* *
62267181 CTAAGGGCAAAATGGTCATTTTGCCAAAAT
1 CTAAGGGCAAAATAGTAATTTTGCCAAAAT
62267211 ATGAATTATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (30 bp):
CTAAGGGCAAAATAGTAATTTTGCCAAAAT
Found at i:62267593 original size:48 final size:47
Alignment explanation
Indices: 62267536--62267811 Score: 254
Period size: 48 Copynumber: 5.7 Consensus size: 47
62267526 TGATATCTGT
* *
62267536 GCCAGTGTAAGACCATGTCTGTGACATGACATCGGCCACGATATGAGA
1 GCCAGTGTAAGACCATGTCTG-GACATGGCATCGGCCATGATATGAGA
* * *
62267584 GCCAATGTAAGACCATGTCTAGGACATGGCATC-GACATTGATATGTA-C
1 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCCA-TGATATG-AGA
* * *
62267632 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CATCATGAGA
1 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCCATGAT-ATGAGA
* * * * *
62267680 GCCAGTGCAAGACCATGTCTGAGACATGGCATCGACAATGAGACGAGA
1 GCCAGTGTAAGACCATGTCTG-GACATGGCATCGGCCATGATATGAGA
* * * * *
62267728 GCTAGTGTAAAACCATGTCTAGGACATGGCATCGGGCTTGACAT-ACGA
1 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCCATGATATGA-GA
* *
62267776 GCCAGTGTAAGACCATGTTTGGAACAAGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGG-ACATGGCATCGGC
62267812 AATTCACCCT
Statistics
Matches: 185, Mismatches: 32, Indels: 22
0.77 0.13 0.09
Matches are distributed among these distances:
47 10 0.05
48 169 0.91
49 6 0.03
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGACATGGCATCGGCCATGATATGAGA
Found at i:62267692 original size:96 final size:96
Alignment explanation
Indices: 62267539--62267761 Score: 299
Period size: 96 Copynumber: 2.3 Consensus size: 96
62267529 TATCTGTGCC
* * * *
62267539 AGTGTAAGACCATGTCTGTGACATGACATCGGCCACGATATGAGAGCCAATGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCCAATGCAAGACCATGTCT
* * * *
62267604 -AGGACATGGCATCGACATTGATATGTA-CGCT
66 GA-GACATGGCATCGACAATGAGACG-AGAGCT
*
62267635 AGTGTAAGACCATGTCTGGGACATGGCATCGACCAC-ATCATGAGAGCCAGTGCAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGAT-ATGAGAGCCAATGCAAGACCATGTC
62267699 TGAGACATGGCATCGACAATGAGACGAGAGCT
65 TGAGACATGGCATCGACAATGAGACGAGAGCT
* *
62267731 AGTGTAAAACCATGTCTAGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
62267762 GGCTTGACAT
Statistics
Matches: 113, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
95 3 0.03
96 109 0.96
97 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCCAATGCAAGACCATGTCT
GAGACATGGCATCGACAATGAGACGAGAGCT
Found at i:62267807 original size:144 final size:144
Alignment explanation
Indices: 62267536--62267809 Score: 347
Period size: 144 Copynumber: 1.9 Consensus size: 144
62267526 TGATATCTGT
* * * * * * *
62267536 GCCAGTGTAAGACCATGTCTGTGACATGACATCGGCCACGATATGAGAGCCAATGTAAGACCATG
1 GCCAGTGCAAGACCATGTCTGAGACATGACATCGACAACGAGACGAGAGCCAATGTAAAACCATG
* * * *
62267601 TCTAGGACATGGCATCGACATTGATATGTACGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
66 TCTAGGACATGGCATCGACATTGATACGTACGCCAGTGTAAGACCATGTCTGGAACAAGGCATCG
62267666 ACCACATCATGAGA
131 ACCACATCATGAGA
* * * *
62267680 GCCAGTGCAAGACCATGTCTGAGACATGGCATCGACAATGAGACGAGAGCTAGTGTAAAACCATG
1 GCCAGTGCAAGACCATGTCTGAGACATGACATCGACAACGAGACGAGAGCCAATGTAAAACCATG
* *
62267745 TCTAGGACATGGCATCGGGC-TTGACATACG-A-GCCAGTGTAAGACCATGTTTGGAACAAGGCA
66 TCTAGGACATGGCATC-GACATTG--ATACGTACGCCAGTGTAAGACCATGTCTGGAACAAGGCA
62267807 TCG
128 TCG
62267810 GCAATTCACC
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
144 103 0.94
145 3 0.03
146 4 0.04
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (144 bp):
GCCAGTGCAAGACCATGTCTGAGACATGACATCGACAACGAGACGAGAGCCAATGTAAAACCATG
TCTAGGACATGGCATCGACATTGATACGTACGCCAGTGTAAGACCATGTCTGGAACAAGGCATCG
ACCACATCATGAGA
Found at i:62270167 original size:40 final size:40
Alignment explanation
Indices: 62270102--62270343 Score: 377
Period size: 40 Copynumber: 6.2 Consensus size: 40
62270092 GGACTAAGAT
* * *
62270102 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
62270142 CCGAAGGCATTTGTGTGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
62270182 CCGAAGGCATTTGTGCGAGTTACTATATCC--G-TAAGT-
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
62270218 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
62270258 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
62270298 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
62270337 CCGAAGG
1 CCGAAGG
62270344 TACTTGGGTT
Statistics
Matches: 191, Mismatches: 7, Indels: 9
0.92 0.03 0.04
Matches are distributed among these distances:
36 30 0.16
37 5 0.03
38 2 0.01
39 20 0.10
40 134 0.70
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:62270244 original size:76 final size:79
Alignment explanation
Indices: 62270102--62270343 Score: 366
Period size: 76 Copynumber: 3.1 Consensus size: 79
62270092 GGACTAAGAT
* * * *
62270102 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
*
62270167 TATCCGGGTTAAGTC
65 TATCCGGGCTAAGTC
62270182 CCGAAGGCATTTGTGCGAGTTACTATATCC-G-TAAGT-CCGAAGGCATTTGTGCGAGTTACTAT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
62270244 ATCCGGGCTAAGTC
66 ATCCGGGCTAAGTC
**
62270258 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGTTA
1 CCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
*
62270323 TATCC-GGCTAAATC
65 TATCCGGGCTAAGTC
62270337 CCGAAGG
1 CCGAAGG
62270344 TACTTGGGTT
Statistics
Matches: 151, Mismatches: 7, Indels: 9
0.90 0.04 0.05
Matches are distributed among these distances:
76 68 0.45
77 5 0.03
78 2 0.01
79 20 0.13
80 56 0.37
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
ATCCGGGCTAAGTC
Found at i:62270305 original size:116 final size:117
Alignment explanation
Indices: 62270096--62270328 Score: 396
Period size: 116 Copynumber: 2.0 Consensus size: 117
62270086 ATAACCGGAC
* * *
62270096 TAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAG
1 TAAGATCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
62270161 TTACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
66 TTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
62270213 TAAG-TCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGATCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
**
62270277 TTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGTTATATCCG
66 TTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
62270329 GCTAAATCCC
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
116 105 0.96
117 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (117 bp):
TAAGATCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:62278169 original size:40 final size:40
Alignment explanation
Indices: 62278114--62278319 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
62278104 GGACTAAGAT
* * *
62278114 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
62278154 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
62278194 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
62278234 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
62278274 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
62278313 CCGAAGG
1 CCGAAGG
62278320 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 15 0.09
40 145 0.91
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:62284951 original size:48 final size:47
Alignment explanation
Indices: 62284878--62285195 Score: 291
Period size: 48 Copynumber: 6.6 Consensus size: 47
62284868 ATATGTGTGC
* *
62284878 CAGTGTAAGACCTTGTCTGGGACATGGCATCGGCCACGATATGAGAG
1 CAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACGATATGAGAG
* * * * * *
62284925 ACAGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGATC
1 -CAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACGATATGAGA-G
* * *
62284974 CAGTGTAAGACCATGTCTAGG-ACATGGCATC-GACACTGATATGTGTAA
1 CAGTGTAAGACCATGTCT-GGAACATGGCATCGGCCAC-GATATGAG-AG
* * *
62285022 TAGTGTAAGACCATGTATGGAACATGGCATCGACCAC-ATCATGAGAG
1 CAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACGAT-ATGAGAG
* * * ** * * *
62285069 CTAGTGTAAAACCATGTCTGGGACATGGCATTGGTAATGAGACGAGAG
1 C-AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACGATATGAGAG
* * * *
62285117 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGCGAG
1 C-AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACGATATGAGAG
*
62285165 CCAGTGTAAGACCATGTTTGGAACATGGCAT
1 -CAGTGTAAGACCATGTCTGGAACATGGCAT
62285196 TGGTAATTCA
Statistics
Matches: 216, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
47 7 0.03
48 201 0.93
49 8 0.04
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACGATATGAGAG
Found at i:62285043 original size:96 final size:96
Alignment explanation
Indices: 62284876--62285195 Score: 326
Period size: 96 Copynumber: 3.3 Consensus size: 96
62284866 TGATATGTGT
* *
62284876 GCCAGTGTAAGACCTTGTCTGGGACATGGCATCGGCCACGATATGAGAGACAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACACGATATGAGAGACAGTGTAAGACCATG
* * * ** **
62284941 TTTGGAACATGGCATCGGCGATGTTGTGAGA
66 TATGGAACATGGCATCGACCACATCATGAGA
* * * *
62284972 TCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACACTGATATGTGTA-ATAGTGTAAGACCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACAC-GATATGAG-AGACAGTGTAAGACCA
62285035 TGTATGGAACATGGCATCGACCACATCATGAGA
64 TGTATGGAACATGGCATCGACCACATCATGAGA
* * * * * *
62285068 GCTAGTGTAAAACCATGTCTGGGACATGGCATTGGTA-ATGAGACGAGAG-CTAGTGTAAGACCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACACGATATGAGAGAC-AGTGTAAGACCA
* * * * *
62285131 TGTCTGGGACATGGCATCGGCCTCGA-CATGCGA
64 TGTATGGAACATGGCATCGACCAC-ATCATGAGA
* *
62285164 GCCAGTGTAAGACCATGTTTGGAACATGGCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCAT
62285196 TGGTAATTCA
Statistics
Matches: 185, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
95 5 0.03
96 175 0.95
97 4 0.02
98 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACACGATATGAGAGACAGTGTAAGACCATG
TATGGAACATGGCATCGACCACATCATGAGA
Found at i:62285126 original size:144 final size:144
Alignment explanation
Indices: 62284878--62285195 Score: 367
Period size: 144 Copynumber: 2.2 Consensus size: 144
62284868 ATATGTGTGC
* * * * * *
62284878 CAGTGTAAGACCTTGTCTGGGACATGGCATCGGCCACGATATGAGAGACAGTGTAAGACCATGTT
1 CAGTGTAAGACCATGTATGGAACATGGCATCGACCACGATATGAGAGACAGTGTAAAACCATGTC
* * * *
62284943 TGGAACATGGCATCGGCGATGTTGTGAGATCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC
66 TGGAACATGGCATCGGCAATGTAGCGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC
* *
62285008 ACT-GATATGTGTA-A
131 -CTCGACATGCG-AGA
*
62285022 TAGTGTAAGACCATGTATGGAACATGGCATCGACCAC-ATCATGAGAG-CTAGTGTAAAACCATG
1 CAGTGTAAGACCATGTATGGAACATGGCATCGACCACGAT-ATGAGAGAC-AGTGTAAAACCATG
* * * * *
62285085 TCTGGGACATGGCATTGGTAATG-AGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
64 TCTGGAACATGGCATCGGCAATGTAG-CGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
* *
62285149 GGCCTCGACATGCGAGC
128 GACCTCGACATGCGAGA
*
62285166 CAGTGTAAGACCATGTTTGGAACATGGCAT
1 CAGTGTAAGACCATGTATGGAACATGGCAT
62285196 TGGTAATTCA
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
143 7 0.05
144 140 0.95
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (144 bp):
CAGTGTAAGACCATGTATGGAACATGGCATCGACCACGATATGAGAGACAGTGTAAAACCATGTC
TGGAACATGGCATCGGCAATGTAGCGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC
CTCGACATGCGAGA
Found at i:62290009 original size:40 final size:40
Alignment explanation
Indices: 62289954--62290171 Score: 350
Period size: 40 Copynumber: 5.5 Consensus size: 40
62289944 TGGATGATAA
*
62289954 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
*
62289994 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
62290034 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
62290074 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
* * *
62290114 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTA-CTATAT
* *
62290154 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
62290172 TACTTGGCTT
Statistics
Matches: 170, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 15 0.09
40 155 0.91
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
Found at i:62295444 original size:40 final size:40
Alignment explanation
Indices: 62295378--62295544 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
62295368 AAATTGAATG
* * *
62295378 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
62295417 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
62295457 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62295497 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62295537 ATATCCGG
1 ATATCCGG
62295545 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62306139 original size:29 final size:29
Alignment explanation
Indices: 62306106--62306323 Score: 294
Period size: 29 Copynumber: 7.6 Consensus size: 29
62306096 GTGACGAGAT
62306106 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
62306135 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
62306164 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
62306193 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
62306222 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** *
62306251 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * * ***
62306280 CGGCACT-GGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
62306308 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
62306324 GGCTTAAATT
Statistics
Matches: 173, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
28 21 0.12
29 152 0.88
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:62308523 original size:2 final size:2
Alignment explanation
Indices: 62308516--62308540 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
62308506 TCAGCTATGT
62308516 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
62308541 TGCAATGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:62309290 original size:42 final size:42
Alignment explanation
Indices: 62309234--62309363 Score: 215
Period size: 42 Copynumber: 3.1 Consensus size: 42
62309224 TCTTGATATA
*
62309234 ATATATATCCGGGTTAAATCCCGCAGGGTTCGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGGTTAGTGCTGGTAAT
* *
62309276 ATATATATCTGGGTTAAATCCCGCAGGGTTTGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGGTTAGTGCTGGTAAT
* *
62309318 ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATATATCCGGGTTAAATCCCGCAGGGTTAGTGCTGGTAAT
62309360 ATAT
1 ATAT
62309364 CCGGACTTAG
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
ATATATATCCGGGTTAAATCCCGCAGGGTTAGTGCTGGTAAT
Found at i:62319663 original size:29 final size:29
Alignment explanation
Indices: 62319630--62319761 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
62319620 GTGACGAGAT
*
62319630 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
62319659 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
62319688 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
62319717 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
62319746 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
62319762 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:62324527 original size:20 final size:20
Alignment explanation
Indices: 62324504--62324541 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
62324494 CACATCCAAA
*
62324504 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
62324524 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
62324542 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:62326940 original size:40 final size:40
Alignment explanation
Indices: 62326843--62327064 Score: 160
Period size: 40 Copynumber: 5.6 Consensus size: 40
62326833 GAATCACGTA
* *
62326843 CCTTCGGGATTTAA-CCGGATATAGTGACTCGCTCGATTG
1 CCTTCGGGACTTAACCCGGATATAGTGACTCGCACGATTG
* * * * *
62326882 TCTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTG
1 CCTTCGGGACTTAACCCGGATATAGTGACTCGCACGATTG
* * * * * * * **
62326922 CCTTTGGGTCTTAACCCGGATTTGGTAACTTGCACAAAGG
1 CCTTCGGGACTTAACCCGGATATAGTGACTCGCACGATTG
* * * *
62326962 CCTTCGGGTCTTAGCCCGGATATA-TCAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATATAGT-GACTCGCACGATTG
* * * * * * **
62327002 CCTTCGGGTCTTAGCCCGGATGTAATTACTAGCATAATTG
1 CCTTCGGGACTTAACCCGGATATAGTGACTCGCACGATTG
*
62327042 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAACCCGGATAT
62327065 CATTCCAATG
Statistics
Matches: 144, Mismatches: 36, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
39 11 0.08
40 132 0.92
41 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAGTGACTCGCACGATTG
Found at i:62326995 original size:80 final size:80
Alignment explanation
Indices: 62326883--62327064 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
62326873 GCTCGATTGT
* * * * * * * **
62326883 CTTCGGGACCTAGCCCGGTTATAGT-GATTCGCACGATTGCCTTTGGGTCTTAACCCGGATTTGG
1 CTTCGGGACTTAGCCCGGATATA-TCAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAA
*
62326947 TAACTTGCACAAAGGC
65 TAACTAGCACAAAGGC
* *
62326963 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAAT
1 CTTCGGGACTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAAT
* * **
62327028 TACTAGCATAATTGC
66 AACTAGCACAAAGGC
62327043 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
62327065 CATTCCAATG
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
79 1 0.01
80 83 0.99
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.29
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAAT
AACTAGCACAAAGGC
Found at i:62342143 original size:39 final size:40
Alignment explanation
Indices: 62342029--62342211 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
62342019 GCTACTCGTT
*
62342029 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
62342069 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
62342109 CCAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
62342148 CAAATGCCTTC-GGATCTTAGTCC-GATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
62342188 CAAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
62342212 AATATCATTC
Statistics
Matches: 124, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 42 0.34
40 75 0.60
41 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62342197 original size:79 final size:80
Alignment explanation
Indices: 62342029--62342211 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
62342019 GCTACTCGTT
* *
62342029 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
* *
62342094 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
* **
62342109 CCAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCACACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCC
*
62342171 -GATATAGTCACTTAGCA
64 GGATATAGTAAC-TAGCA
*
62342188 CAAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
62342212 AATATCATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 12 0.13
79 53 0.60
80 24 0.27
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:62346067 original size:42 final size:42
Alignment explanation
Indices: 62346011--62346139 Score: 197
Period size: 42 Copynumber: 3.1 Consensus size: 42
62346001 TCTCGATATA
* *
62346011 ATATATATCTGGGTTAAATCCCACAGGCTTCGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
62346053 ATATATATCCGGGTTAAATCCCGCCGGCTTCGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * *
62346095 ATATATAACCGGGTTAAATCCCGCA-GCTTAGTGCTGGTACT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
62346136 ATAT
1 ATAT
62346140 CCGGACTTAG
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
41 18 0.22
42 62 0.77
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (42 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:62347705 original size:28 final size:32
Alignment explanation
Indices: 62347673--62347736 Score: 91
Period size: 30 Copynumber: 2.1 Consensus size: 32
62347663 ATCGTATATG
*
62347673 TTTATA-TC-TATTTCCAAATTG-ATTA-GTA
1 TTTATATTCATATTACCAAATTGAATTAGGTA
62347701 TTTATATTCATATTACCAAATTGAATTAGGTA
1 TTTATATTCATATTACCAAATTGAATTAGGTA
62347733 TTTA
1 TTTA
62347737 ATGATTTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 6 0.19
29 2 0.06
30 12 0.39
31 4 0.13
32 7 0.23
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.48
Consensus pattern (32 bp):
TTTATATTCATATTACCAAATTGAATTAGGTA
Found at i:62347921 original size:43 final size:42
Alignment explanation
Indices: 62347853--62347990 Score: 138
Period size: 43 Copynumber: 3.3 Consensus size: 42
62347843 TGTGAATTCA
* *
62347853 TGTAAGACTATGTCTAGGACATTGGCATCGA-AGTGATAAAACG
1 TGTAAGACCATGTCTAGGACGTTGGCATCGATA-T-ATAAAACG
* **
62347896 TGTAAGACCATGTCTGGGACGTTGGCATC-ATATATAACTCG
1 TGTAAGACCATGTCTAGGACGTTGGCATCGATATATAAAACG
* * *
62347937 TGTAAGACCTTGTCTAGGACAG-TGGCATCGATATATGATAACA
1 TGTAAGACCATGTCTAGGAC-GTTGGCATCGATATAT-AAAACG
*
62347980 TTTAAGACCAT
1 TGTAAGACCAT
62347991 ATTTGGGATA
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
41 31 0.40
42 9 0.12
43 38 0.49
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACGTTGGCATCGATATATAAAACG
Found at i:62347951 original size:41 final size:42
Alignment explanation
Indices: 62347853--62347972 Score: 138
Period size: 41 Copynumber: 2.9 Consensus size: 42
62347843 TGTGAATTCA
* * **
62347853 TGTAAGACTATGTCTAGGACATTGGCATCGA-AGTGATAAAACG
1 TGTAAGACCATGTCTAGGACAGTGGCATCGATA-T-ATAACTCG
*
62347896 TGTAAGACCATGTCTGGGAC-GTTGGCATC-ATATATAACTCG
1 TGTAAGACCATGTCTAGGACAG-TGGCATCGATATATAACTCG
*
62347937 TGTAAGACCTTGTCTAGGACAGTGGCATCGATATAT
1 TGTAAGACCATGTCTAGGACAGTGGCATCGATATAT
62347973 GATAACATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
41 31 0.47
42 9 0.14
43 26 0.39
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACAGTGGCATCGATATATAACTCG
Found at i:62350080 original size:14 final size:14
Alignment explanation
Indices: 62350061--62350093 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
62350051 GTCCCTTAAC
62350061 TAACTTTAGAAAAA
1 TAACTTTAGAAAAA
*
62350075 TAACTTTAGAAAAT
1 TAACTTTAGAAAAA
62350089 TAACT
1 TAACT
62350094 CTTACACTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.09, G:0.06, T:0.33
Consensus pattern (14 bp):
TAACTTTAGAAAAA
Found at i:62355261 original size:40 final size:40
Alignment explanation
Indices: 62355208--62355356 Score: 183
Period size: 40 Copynumber: 3.7 Consensus size: 40
62355198 TATAACCACA
* *
62355208 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACT
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACT
* *
62355248 TGCACAATTGCCTTCGGGTCTTAACCCGGATATAACAACT
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACT
* * *
62355288 CGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACT
1 AGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACT
* * * *
62355328 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAATTGCCTTCGGGTCTTAACCCGG
62355357 GTATCATTCA
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACT
Found at i:62358312 original size:93 final size:93
Alignment explanation
Indices: 62358200--62358372 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
62358190 CGCCCATAAG
* *
62358200 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
62358265 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
62358293 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
62358358 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
62358373 CAAATATCCA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:62358368 original size:46 final size:46
Alignment explanation
Indices: 62358193--62358368 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
62358183 TGTAACCCGC
* * *
62358193 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
62358239 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
62358289 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
62358332 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
62358369 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62361631 original size:40 final size:40
Alignment explanation
Indices: 62361586--62361752 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
62361576 CGGAATATAA
62361586 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62361626 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
62361666 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
62361706 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
62361745 CCGGATAT
1 CCGGATAT
62361753 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62369595 original size:40 final size:40
Alignment explanation
Indices: 62369550--62369715 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
62369540 CGGAATATAA
62369550 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62369590 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
62369630 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
62369670 CCGGATATAATTTCCAGCATAATTGTC-TCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
62369708 CCGGATAT
1 CCGGATAT
62369716 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
38 13 0.12
39 6 0.06
40 85 0.82
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62377423 original size:40 final size:40
Alignment explanation
Indices: 62377364--62377505 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
62377354 AAATTGAATG
* * *
62377364 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
62377404 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
62377444 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
62377484 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
62377506 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:62377506 original size:40 final size:39
Alignment explanation
Indices: 62377403--62377515 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
62377393 TGCTGGAAAT
* * **
62377403 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCAC
*
62377443 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
*
62377483 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
62377516 ACATGCTTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:62379598 original size:25 final size:25
Alignment explanation
Indices: 62379521--62379600 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
62379511 CGGATTGCAA
62379521 GGAAAGCCTTTGTGGTGAATCCTTT
1 GGAAAGCCTTTGTGGTGAATCCTTT
* **
62379546 AGAAAGCCTTTGTGGAAAATCCTTT
1 GGAAAGCCTTTGTGGTGAATCCTTT
* * *
62379571 GGAAAGCCTTTATGGTGAATTCTCT
1 GGAAAGCCTTTGTGGTGAATCCTTT
62379596 GGAAA
1 GGAAA
62379601 ATCAGCAGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (25 bp):
GGAAAGCCTTTGTGGTGAATCCTTT
Found at i:62379753 original size:25 final size:25
Alignment explanation
Indices: 62379719--62379772 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
62379709 GGATTTCATG
*
62379719 GAAAGCCTTTGTGGCGAATCCTCTA
1 GAAAGCCTTTGTGGCAAATCCTCTA
* *
62379744 GAAAGCCTTTGTGGCAAATTCTCTG
1 GAAAGCCTTTGTGGCAAATCCTCTA
62379769 GAAA
1 GAAA
62379773 ATTTGTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (25 bp):
GAAAGCCTTTGTGGCAAATCCTCTA
Found at i:62381115 original size:27 final size:26
Alignment explanation
Indices: 62381085--62381148 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
62381075 TATCATACAT
* *
62381085 GTCACTTCATATCGTAGGGGCATATCA
1 GTCACTTCATA-CATAGGGGCATAACA
* * *
62381112 GTCATTTTACCACATAGGGGCATAACA
1 GTCACTTCA-TACATAGGGGCATAACA
62381139 GTCACTTCAT
1 GTCACTTCAT
62381149 CAATTTGGGG
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GTCACTTCATACATAGGGGCATAACA
Found at i:62384243 original size:14 final size:14
Alignment explanation
Indices: 62384224--62384250 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
62384214 AACATGCATA
62384224 AAATGACCAAATTC
1 AAATGACCAAATTC
62384238 AAATGACCAAATT
1 AAATGACCAAATT
62384251 TCATTCAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (14 bp):
AAATGACCAAATTC
Found at i:62385830 original size:26 final size:26
Alignment explanation
Indices: 62385776--62385836 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
62385766 TACATCGTTT
* * *
62385776 CTCACACAAGCTATGAAATGAGTCTA
1 CTCACACGAGCTATGAAATGAGCCAA
*
62385802 CTCACACGAGCTATGAAATGGGCCAA
1 CTCACACGAGCTATGAAATGAGCCAA
*
62385828 CTCATACGA
1 CTCACACGA
62385837 TCTGTGGGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (26 bp):
CTCACACGAGCTATGAAATGAGCCAA
Found at i:62388853 original size:50 final size:50
Alignment explanation
Indices: 62388733--62388978 Score: 264
Period size: 49 Copynumber: 4.9 Consensus size: 50
62388723 TAGCCGAAGC
* * * * * * *
62388733 TATCTGGTACGCATAGTAGTCTGCACTTAGTATTACACATGCGACC-AAT
1 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAT
*
62388782 TATAC-GGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAC
1 TAT-CTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAT
* * * * *
62388832 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA-T
* * * * * * *
62388883 TTTCAGGTACGCATAGTAGCCTTCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAT
*
62388932 TATCTGGTACACGTAGTAGCCTACACTTAGTATTACACACGTGACCT
1 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCT
62388979 CACAATAGCT
Statistics
Matches: 160, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
49 77 0.48
50 47 0.29
51 36 0.22
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAT
Found at i:62389659 original size:30 final size:30
Alignment explanation
Indices: 62389625--62389684 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
62389615 CTTTAATACG
62389625 AACTTTGGCAAAATTACTA-TTTTGCCCCTA
1 AACTTTGGCAAAATTAC-ACTTTTGCCCCTA
* *
62389655 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
62389685 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:62399864 original size:48 final size:47
Alignment explanation
Indices: 62399793--62400159 Score: 366
Period size: 48 Copynumber: 7.6 Consensus size: 47
62399783 TGAGATTCCA
* * *
62399793 TGTAAGACCATGTCTAGGACATGGCATTGGCATCTGAATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATAT-AATATGTGCCTG
*
62399841 TGTAAGACCATGTCTGGGACATGGCATC-G-ATGATAATATGTATGCCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAT-ATAATATG--TGCCTG
* * *
62399889 TGTAAGACCATGTTTGGGACATGGCATCAGC-GATAATATGTATGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATATAATATG--TGCCTG
* * *
62399937 TGTAAGACCATGTCTAGGACATGGCATTGGCGATAATATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-AT-ATA-ATATGTGCCTG
* *
62399987 TGTAAGACCATGTCTGGGACATGGCATCGGTGATAATATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CAT-ATA-ATATGTGCCTG
* *
62400037 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT-GTATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-AT-ATAATATGTGCCTG
* * ** *
62400085 TGTAAGACCATGTCTGGGACATAGCATCGGCA-ATGATATGTGGATTCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATATAATATGT-GCCT-G
* *
62400133 TGTAAGACCATATCAGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
62400160 TGGTACTTTA
Statistics
Matches: 277, Mismatches: 28, Indels: 28
0.83 0.08 0.08
Matches are distributed among these distances:
45 2 0.01
46 13 0.05
47 4 0.01
48 164 0.59
49 1 0.00
50 85 0.31
51 3 0.01
52 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATATAATATGTGCCTG
Found at i:62400079 original size:98 final size:97
Alignment explanation
Indices: 62399793--62400114 Score: 402
Period size: 98 Copynumber: 3.3 Consensus size: 97
62399783 TGAGATTCCA
* * * *
62399793 TGTAAGACCATGTCTAGGACATGGCATTGGCAT-CTGA-ATATGTGCCTGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATCGGGATAAT-ATATATGTGCCTGTGTAAGACCATGTCT
** * *
62399856 GGGACATGGCATCGATGATAATATGTATGCCTA-
65 GGGACATGGCATCGGCGATAATATATGTGCC-AG
* * *
62399889 TGTAAGACCATGTTTGGGACATGGCATCAGCGATAATATGTA--TGCCTGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATC-GGGATAATATATATGTGCCTGTGTAAGACCATGTCT
* *
62399952 AGGACATGGCATTGGCGATAATATATATGTGCCAG
65 GGGACATGGCATCGGCGAT-A-ATATATGTGCCAG
*
62399987 TGTAAGACCATGTCTGGGACATGGCATCGGTGATAATATATATGTGCCAGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATCGG-GATAATATATATGTGCCTGTGTAAGACCATGTCT
* *
62400052 GGGACATGGCATCGGCGATGATGTATGTGCCAG
65 GGGACATGGCATCGGCGATAATATATGTGCCAG
*
62400085 TGTAAGACCATGTCTGGGACATAGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
62400115 CAATGATATG
Statistics
Matches: 195, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
96 61 0.31
97 7 0.04
98 90 0.46
100 37 0.19
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (97 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGGATAATATATATGTGCCTGTGTAAGACCATGTCTG
GGACATGGCATCGGCGATAATATATGTGCCAG
Found at i:62400139 original size:196 final size:194
Alignment explanation
Indices: 62399793--62400162 Score: 471
Period size: 196 Copynumber: 1.9 Consensus size: 194
62399783 TGAGATTCCA
* * *
62399793 TGTAAGACCATGTCTAGGACATGGCATTGGCATCTGAATATGTGCCTGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATATGAATATGTGCCAGTGTAAGACCATGTCTGG
* * * * *
62399858 GACATGGCATCGATGATAATATGTATGCCTATGTAAGACCATGTTTGGGACATGGCATCAGCGAT
66 GACATGGCATCGACGATAATATATATGCCTATGTAAGACCATGTCTGGGACATAGCATCAGCAAT
* *
62399923 AATATGTATGCCTGTGTAAGACCATGTCTA-GGACATGGCATTGGCGATAATATATATGTGCCAG
131 AATATGTATGCCTATGTAAGACCATATC-AGGGACATGGCATTGGCGATAATATATATGTGCCAG
* *
62399987 TGTAAGACCATGTCTGGGACATGGCATCGGTGATAAT-ATATATGTGCCAGTGTAAGACCATGTC
1 TGTAAGACCATGTCTAGGACATGGCATCGG-CAT-ATGA-ATATGTGCCAGTGTAAGACCATGTC
* * * * *
62400051 TGGGACATGGCATCGGCGATGATGTATGTGCC-AGTGTAAGACCATGTCTGGGACATAGCATCGG
63 TGGGACATGGCATCGACGATAATATATATGCCTA-TGTAAGACCATGTCTGGGACATAGCATCAG
* *
62400115 CAATGATATGTGGAT-TC-ATGTAAGACCATATCAGGGACATGGCATTGG
127 CAATAATATGT--ATGCCTATGTAAGACCATATCAGGGACATGGCATTGG
62400163 TACTTTATTT
Statistics
Matches: 150, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
194 28 0.19
195 5 0.03
196 114 0.76
197 1 0.01
198 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (194 bp):
TGTAAGACCATGTCTAGGACATGGCATCGGCATATGAATATGTGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACGATAATATATATGCCTATGTAAGACCATGTCTGGGACATAGCATCAGCAAT
AATATGTATGCCTATGTAAGACCATATCAGGGACATGGCATTGGCGATAATATATATGTGCCAG
Found at i:62406423 original size:6 final size:6
Alignment explanation
Indices: 62406412--62406549 Score: 160
Period size: 6 Copynumber: 22.8 Consensus size: 6
62406402 AACCAAAATG
*
62406412 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
62406460 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
62406509 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT
62406550 TACGTGACAA
Statistics
Matches: 115, Mismatches: 6, Indels: 22
0.80 0.04 0.15
Matches are distributed among these distances:
5 8 0.07
6 98 0.85
7 7 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:62406511 original size:61 final size:60
Alignment explanation
Indices: 62406412--62406574 Score: 238
Period size: 61 Copynumber: 2.7 Consensus size: 60
62406402 AACCAAAATG
* * **
62406412 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAA-CAGAATC
1 AGAATCAGAATCAGAATTAGTGACAGAATCAGAATCAGAATCAATAACAG-AATCAGAATC
*
62406472 AGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATC
1 AGAATCAGAATCAGAATTA-GTGACAGAATCAGAATCAGAATCAATAACAGAATCAGAATC
*
62406533 AGAATCAGAATCAGAATTACGTGACAAAATCAGAATCAGAAT
1 AGAATCAGAATCAGAATTA-GTGACAGAATCAGAATCAGAAT
62406575 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
60 20 0.21
61 74 0.79
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (60 bp):
AGAATCAGAATCAGAATTAGTGACAGAATCAGAATCAGAATCAATAACAGAATCAGAATC
Done.