Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 206 of 410
Found at i:62922595 original size:21 final size:21
Alignment explanation
Indices: 62922557--62922622 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
62922547 ACTTAGAGTG
* *
62922557 GAGGCAGCAGAGAGGGAGGCA
1 GAGGCAGCAGCGAAGGAGGCA
* *
62922578 GCGGTAGCAGCGAAGGAGGCA
1 GAGGCAGCAGCGAAGGAGGCA
* *
62922599 GAGGCAGCAGCGATGGAAGCA
1 GAGGCAGCAGCGAAGGAGGCA
62922620 GAG
1 GAG
62922623 CAGAGCAGAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.32, C:0.17, G:0.48, T:0.03
Consensus pattern (21 bp):
GAGGCAGCAGCGAAGGAGGCA
Found at i:62923017 original size:43 final size:41
Alignment explanation
Indices: 62922970--62923066 Score: 106
Period size: 43 Copynumber: 2.3 Consensus size: 41
62922960 TCTGCCAAAA
62922970 TTAGCGGTGTTTCTAAAAAATGCGCCGCTAAAAGCCATGACTT
1 TTAGCGGTGTTTCTAAAAAA--CGCCGCTAAAAGCCATGACTT
* * * *
62923013 TTAGCGGCGCTTTTCTCACAAACGCCGCTAAAAGCTATGACTT
1 TTAGCGGTG--TTTCTAAAAAACGCCGCTAAAAGCCATGACTT
*
62923056 TT-GTGGTGTTT
1 TTAGCGGTGTTT
62923067 TTTTCAGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
40 3 0.07
42 4 0.09
43 30 0.65
45 9 0.20
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (41 bp):
TTAGCGGTGTTTCTAAAAAACGCCGCTAAAAGCCATGACTT
Found at i:62938821 original size:50 final size:45
Alignment explanation
Indices: 62938767--62938890 Score: 126
Period size: 50 Copynumber: 2.6 Consensus size: 45
62938757 GTAAGGTGTT
*
62938767 GATGCTATGTCCCAGACATGGTCTTACACAAGCTCTAACATATC-TGTGCC
1 GATGC-ATGTCCCAGACATGGTCTTACAC-AGC-C--ACATATCAT-AGCC
* * *
62938817 GATGCCATGTCCCTGAC-TCGGTCTTACACTGCCACATCTCATAGCC
1 GATG-CATGTCCCAGACAT-GGTCTTACACAGCCACATATCATAGCC
62938863 GATGCATGTCCCAGACATGGTCTTACAC
1 GATGCATGTCCCAGACATGGTCTTACAC
62938891 TGGCTCTCGT
Statistics
Matches: 65, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
45 21 0.32
46 14 0.22
47 1 0.02
48 1 0.02
49 3 0.05
50 24 0.37
51 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGGTCTTACACAGCCACATATCATAGCC
Found at i:62938885 original size:45 final size:47
Alignment explanation
Indices: 62938767--62938937 Score: 142
Period size: 46 Copynumber: 3.6 Consensus size: 47
62938757 GTAAGGTGTT
* *
62938767 GATGCTATGTCCCAGACATGGTCTTACACAAGCTCTAACATATCTGTGCC
1 GATGC-ATGTCCCAGACATGGTCTTACAC-TGCTC-AACATATCTGAGCC
* *
62938817 GATGCCATGTCCCTGAC-TCGGTCTTACACTGC-C-ACATCTCAT-AGCC
1 GATG-CATGTCCCAGACAT-GGTCTTACACTGCTCAACATATC-TGAGCC
* * *
62938863 GATGCATGTCCCAGACATGGTCTTACACTGGCTC-TCGTAATTTG-GCC
1 GATGCATGTCCCAGACATGGTCTTACACT-GCTCAACAT-ATCTGAGCC
62938910 GATGCATG-CCCTAGACAT-GTCTTACACT
1 GATGCATGTCCC-AGACATGGTCTTACACT
62938938 AGCCCACAGT
Statistics
Matches: 103, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
45 22 0.21
46 29 0.28
47 22 0.21
48 2 0.02
49 3 0.03
50 24 0.23
51 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTGCTCAACATATCTGAGCC
Found at i:62947347 original size:31 final size:26
Alignment explanation
Indices: 62947254--62947363 Score: 186
Period size: 26 Copynumber: 4.2 Consensus size: 26
62947244 TGGCACAAAT
62947254 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
62947280 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
62947306 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
62947332 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
62947358 TGATAA
1 TGATAA
62947364 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:62949079 original size:27 final size:26
Alignment explanation
Indices: 62948973--62949086 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 26
62948963 GGAGGAAGCT
* * *
62948973 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTCTACCAC-ATTATCTG
* *
62949000 ATCTGGTGGCTCTGCCACATATATCTG
1 TTCTGGTGGCTCTACCACAT-TATCTG
62949027 TTCTGGTGGCTCTACCACGATTATCTG
1 TTCTGGTGGCTCTACCAC-ATTATCTG
* * *
62949054 TATCTGGTGACTCTATCACATCATCTG
1 T-TCTGGTGGCTCTACCACATTATCTG
62949081 TTCTGG
1 TTCTGG
62949087 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTCTACCACATTATCTG
Found at i:62949080 original size:54 final size:54
Alignment explanation
Indices: 62948973--62949086 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
62948963 GGAGGAAGCT
* * * *
62948973 TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TTCTGGTGGCTATACCACAAATATCTGATCTGGTGACTCTACCACATACATCTG
* * * *
62949027 TTCTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTATCACAT-CATCTG
1 TTCTGGTGGCTATACCACAAATATCTG-ATCTGGTGACTCTACCACATACATCTG
62949081 TTCTGG
1 TTCTGG
62949087 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (54 bp):
TTCTGGTGGCTATACCACAAATATCTGATCTGGTGACTCTACCACATACATCTG
Found at i:62954390 original size:40 final size:39
Alignment explanation
Indices: 62954345--62954474 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
62954335 CGGAACATAA
62954345 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
62954385 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
62954425 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
62954465 CCGGATATAA
1 CCGGATATAA
62954475 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:62954489 original size:40 final size:40
Alignment explanation
Indices: 62954361--62954512 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
62954351 ATAACCATGT
* * *
62954361 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
62954401 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
62954441 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
62954481 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
62954513 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:62954495 original size:80 final size:80
Alignment explanation
Indices: 62954361--62954510 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
62954351 ATAACCATGT
*
62954361 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
62954425 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
62954441 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
62954504 CCCGGAT
64 CCCGGAT
62954511 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:62956301 original size:26 final size:26
Alignment explanation
Indices: 62956272--62956381 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
62956262 TGGTACAAAT
62956272 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
62956298 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
62956324 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
62956350 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
62956376 TGATAA
1 TGATAA
62956382 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:62958342 original size:27 final size:27
Alignment explanation
Indices: 62958298--62958410 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
62958288 GAGGAAGCGT
* *
62958298 TCTGGTGGCTATGCCACAAATATTTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
62958325 TCTGGTGGCTCTGTCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
62958352 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
62958380 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
62958406 TCTGG
1 TCTGG
62958411 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
26 5 0.07
27 52 0.72
28 15 0.21
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:62958403 original size:54 final size:54
Alignment explanation
Indices: 62958296--62958410 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
62958286 TGGAGGAAGC
* *
62958296 GTTCTGGTGGCTATGCCACAAATATTTGATCTGGTGGCTCTGTCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGTCACATATATCT
* * *
62958350 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGTCACATATATCT
62958404 GTTCTGG
1 GTTCTGG
62958411 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 36 0.65
55 19 0.35
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGTCACATATATCT
Found at i:62961255 original size:91 final size:90
Alignment explanation
Indices: 62961150--62961455 Score: 290
Period size: 91 Copynumber: 3.4 Consensus size: 90
62961140 TTTTGTTTCC
* **
62961150 AAATTAAAAGTAAATAAAATCCGTTTTAGGATTTATTCCCGCCGTTCAATAGATTTTATTCTATT
1 AAATTAAAATTAAATAAAATCCGTTTTAGGATTTATTCCCGCCGTTCAACGGATTTTATTC-ATT
*
62961215 TTTATTTTATTTTATTTCCAAATGGG
65 TTTATTTTATTTTATTTCCAAATGAG
* * * * *
62961241 AAATTAAAGTTAAATAAAACCCCTTTCAGGATTTATTCCCGCTGTTCAACGGATTTTATTCCA--
1 AAATTAAAATTAAATAAAATCCGTTTTAGGATTTATTCCCGCCGTTCAACGGATTTTATT-CATT
* *
62961304 -AT-TTTTATTTTATTTCCAAA-AACG
65 TTTATTTTATTTTATTTCCAAATGA-G
* * * *
62961328 AGTATTAAAATTAAAATAAAATCTGTTTTGGGATTTATTCCCACCGTTCAACGGA-TTTATTACA
1 A-AATTAAAATT-AAATAAAATCCGTTTTAGGATTTATTCCCGCCGTTCAACGGATTTTATT-CA
* * *
62961392 TTTTGA--TT-TTGT-TGTCCAAAATGAG
63 TTTTTATTTTATTTTATTTCC-AAATGAG
** *
62961417 AAATTAAAATTAAATAAAATCTATTTTGGGATTTATTCC
1 AAATTAAAATTAAATAAAATCCGTTTTAGGATTTATTCC
62961456 TGTAGTTTAT
Statistics
Matches: 177, Mismatches: 28, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
87 47 0.27
88 30 0.17
89 43 0.24
90 3 0.02
91 53 0.30
92 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (90 bp):
AAATTAAAATTAAATAAAATCCGTTTTAGGATTTATTCCCGCCGTTCAACGGATTTTATTCATTT
TTATTTTATTTTATTTCCAAATGAG
Found at i:62961444 original size:87 final size:87
Alignment explanation
Indices: 62961150--62961455 Score: 289
Period size: 87 Copynumber: 3.4 Consensus size: 87
62961140 TTTTGTTTCC
* ** * * **
62961150 AAATTAAAAGTAAATAAAATCCGTTTTAGGATTTATTCCCGCCGTTCAATAGATTTTATT-CTAT
1 AAATTAAAATTAAATAAAATCTATTTTGGGATTTATTCCCACCGTTCAACGGATTTTATTAC-A-
*
62961214 TTTTATTTTATTTTATTTCC-AAATGGG
64 ----ATTTTATTTTATTTCCAAAATGAG
* * ** ** * * *
62961241 AAATTAAAGTTAAATAAAACCCCTTTCAGGATTTATTCCCGCTGTTCAACGGATTTTATTCCAAT
1 AAATTAAAATTAAATAAAATCTATTTTGGGATTTATTCCCACCGTTCAACGGATTTTATTACAA-
*
62961306 TTTTATTTTATTTCCAAAAACGAG
65 TTTTATTTTATTTCC-AAAATGAG
* *
62961330 -TATTAAAATTAAAATAAAATCTGTTTTGGGATTTATTCCCACCGTTCAACGGA-TTTATTAC-A
1 AAATTAAAATT-AAATAAAATCTATTTTGGGATTTATTCCCACCGTTCAACGGATTTTATTACAA
*
62961392 TTTTGATTTTGTTGTCCAAAATGAG
65 TTTT-ATTTTATT-TCCAAAATGAG
62961417 AAATTAAAATTAAATAAAATCTATTTTGGGATTTATTCC
1 AAATTAAAATTAAATAAAATCTATTTTGGGATTTATTCC
62961456 TGTAGTTTAT
Statistics
Matches: 183, Mismatches: 24, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
86 5 0.03
87 57 0.31
88 27 0.15
89 40 0.22
91 53 0.29
92 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (87 bp):
AAATTAAAATTAAATAAAATCTATTTTGGGATTTATTCCCACCGTTCAACGGATTTTATTACAAT
TTTATTTTATTTCCAAAATGAG
Found at i:62966125 original size:43 final size:43
Alignment explanation
Indices: 62965981--62966147 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
62965971 GATTACTGAG
* * *
62965981 ATGTGATTACATGTAAGACCCTGTTTGGGACATTGGCAT-TAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * *
62966023 ATTGTGCTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * ***
62966067 AT-TCGATTTCGTGTAAGACCCTGTCTGGGACAGAAGCATCGAT
1 ATGT-GATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * *
62966110 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
62966148 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
42 6 0.06
43 91 0.91
44 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:62972978 original size:24 final size:24
Alignment explanation
Indices: 62972927--62972979 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
62972917 TTTAGTGTTT
* *
62972927 ATTAGTATAATATATTTAGCATTT
1 ATTAGCATAATATATTTAGCATTG
62972951 ATTAGCATAATATATTT-GACATTG
1 ATTAGCATAATATATTTAG-CATTG
62972975 ATTAG
1 ATTAG
62972980 AATTAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (24 bp):
ATTAGCATAATATATTTAGCATTG
Found at i:62975804 original size:40 final size:40
Alignment explanation
Indices: 62975727--62975902 Score: 122
Period size: 40 Copynumber: 4.2 Consensus size: 40
62975717 TAACAACTGA
*
62975727 TCGGCTAAAA-TGGCACTTAGTGTG-AGGTTCGAAATAGCT
1 TCGGCTAAAAGTGGCACTTAGTGTGCA-ATTCGAAATAGCT
* * * *
62975766 TTGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAAGTGGCACTTAGTGTGCAATTCGAAATAGCT
* ** **
62975806 TCGGCTATATATATATATAAATTTCACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGC--------TA-A-AAGTGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
62975856 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAAGTGGCACTTAGTGTGCAATTCGAAATAGCT
62975896 TCGGCTA
1 TCGGCTA
62975903 TATATATATA
Statistics
Matches: 103, Mismatches: 22, Indels: 23
0.70 0.15 0.16
Matches are distributed among these distances:
39 9 0.09
40 58 0.56
41 2 0.02
42 2 0.02
48 2 0.02
49 1 0.01
50 29 0.28
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (40 bp):
TCGGCTAAAAGTGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:62975893 original size:90 final size:90
Alignment explanation
Indices: 62975740--62975914 Score: 332
Period size: 90 Copynumber: 1.9 Consensus size: 90
62975730 GCTAAAATGG
*
62975740 CACTTAGTGTGAGGTTCGAAATAGCTTTGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGC
1 CACTTAGTGTGAGGTTCGAAATAGCTTCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGC
62975805 TTCGGCTATATATATATATAAATTT
66 TTCGGCTATATATATATATAAATTT
*
62975830 CACTTAGTGTGCGGTTCGAAATAGCTTCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGC
1 CACTTAGTGTGAGGTTCGAAATAGCTTCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGC
62975895 TTCGGCTATATATATATATA
66 TTCGGCTATATATATATATA
62975915 TATATATATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (90 bp):
CACTTAGTGTGAGGTTCGAAATAGCTTCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGC
TTCGGCTATATATATATATAAATTT
Found at i:62975908 original size:2 final size:2
Alignment explanation
Indices: 62975901--62975944 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
62975891 TAGCTTCGGC
62975901 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
62975943 TA
1 TA
62975945 AATGACACTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:62976829 original size:15 final size:15
Alignment explanation
Indices: 62976809--62976839 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
62976799 GTAAAAATGC
62976809 AAATATGATTGTATT
1 AAATATGATTGTATT
*
62976824 AAATATGGTTGTATT
1 AAATATGATTGTATT
62976839 A
1 A
62976840 CCTTAAGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (15 bp):
AAATATGATTGTATT
Found at i:62980341 original size:24 final size:24
Alignment explanation
Indices: 62980314--62980370 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
62980304 AAGAATTAGT
*
62980314 ATTTATTAGTATAATATATTTAAC
1 ATTTATTAGCATAATATATTTAAC
*
62980338 ATTTATTAGCATAATATATTTCAC
1 ATTTATTAGCATAATATATTTAAC
*
62980362 ATTGATTAG
1 ATTTATTAG
62980371 AATTAGGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47
Consensus pattern (24 bp):
ATTTATTAGCATAATATATTTAAC
Found at i:62987081 original size:20 final size:20
Alignment explanation
Indices: 62987053--62987097 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
62987043 CTCATTTTTC
* *
62987053 CTCTCAAATGCTCT-TTAATT
1 CTCTTAAAT-CTCTCTTAAAT
62987073 CTCTTAAATCTCTCTTAAAT
1 CTCTTAAATCTCTCTTAAAT
62987093 CTCTT
1 CTCTT
62987098 TTCAGTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.24, C:0.27, G:0.02, T:0.47
Consensus pattern (20 bp):
CTCTTAAATCTCTCTTAAAT
Found at i:62987088 original size:11 final size:11
Alignment explanation
Indices: 62987063--62987096 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
62987053 CTCTCAAATG
*
62987063 CTCTTTAAT-T
1 CTCTTAAATCT
62987073 CTCTTAAATCT
1 CTCTTAAATCT
62987084 CTCTTAAATCT
1 CTCTTAAATCT
62987095 CT
1 CT
62987097 TTTCAGTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.24, C:0.26, G:0.00, T:0.50
Consensus pattern (11 bp):
CTCTTAAATCT
Found at i:62987119 original size:18 final size:19
Alignment explanation
Indices: 62987096--62987137 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
62987086 CTTAAATCTC
*
62987096 TTTTCAGTATTTTT-CTAT
1 TTTTCAATATTTTTGCTAT
*
62987114 TTTTCAATATTTTTGTTAT
1 TTTTCAATATTTTTGCTAT
62987133 TTTTC
1 TTTTC
62987138 TTCCTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.17, C:0.10, G:0.05, T:0.69
Consensus pattern (19 bp):
TTTTCAATATTTTTGCTAT
Found at i:62987827 original size:22 final size:22
Alignment explanation
Indices: 62987785--62987828 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
62987775 TTGGACTTGA
* *
62987785 TTTTTATTTTTATTTTTTGTTT
1 TTTTTATTTTTATTGTGTGTTT
62987807 TTTTTATTGTTT-TTGTGTGTTT
1 TTTTTATT-TTTATTGTGTGTTT
62987829 GTGTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.07, C:0.00, G:0.11, T:0.82
Consensus pattern (22 bp):
TTTTTATTTTTATTGTGTGTTT
Found at i:62993597 original size:50 final size:48
Alignment explanation
Indices: 62993538--62993701 Score: 149
Period size: 50 Copynumber: 3.4 Consensus size: 48
62993528 GCCAAATCCT
62993538 AGACATGGTCTTACACTAACTCTTATATATCGAGACCGATACCATGTCCC
1 AGACATGGTCTTACACTAACTCTTATATATCGAG-CCGAT-CCATGTCCC
* ** * **
62993588 AGACATGGTCTTACACTAGCT-TTCAGGTCTCGAGGTTGATGCCATGTCCC
1 AGACATGGTCTTACACTAACTCTT-ATATATCGA-GCCGAT-CCATGTCCC
* * *
62993638 AGACATGGTCTTACACTGGA-TCTCATAATAT-G-GCCGATGCATGTCCC
1 AGACATGGTCTTACACT-AACTCTTAT-ATATCGAGCCGATCCATGTCCC
62993685 AGACAT-GTCTTACACTA
1 AGACATGGTCTTACACTA
62993702 GCACACATAT
Statistics
Matches: 92, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
46 10 0.11
47 14 0.15
48 4 0.04
49 2 0.02
50 58 0.63
51 4 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
AGACATGGTCTTACACTAACTCTTATATATCGAGCCGATCCATGTCCC
Found at i:63012340 original size:42 final size:43
Alignment explanation
Indices: 63012285--63012366 Score: 132
Period size: 42 Copynumber: 1.9 Consensus size: 43
63012275 TGTGTCTCAT
63012285 AATCATGAACTCAG-ACTACAACTC-ATGAGTTCAAATCACATA
1 AATCATGAACTCAGAAC-ACAACTCAATGAGTTCAAATCACATA
*
63012327 AATCATGAACTCAGAACACAACTCAATGAGTTCAGATCAC
1 AATCATGAACTCAGAACACAACTCAATGAGTTCAAATCAC
63012367 GTAATTCCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 21 0.57
43 16 0.43
ACGTcount: A:0.43, C:0.24, G:0.11, T:0.22
Consensus pattern (43 bp):
AATCATGAACTCAGAACACAACTCAATGAGTTCAAATCACATA
Found at i:63020190 original size:42 final size:43
Alignment explanation
Indices: 63020135--63020215 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
63020125 TGTGTCTCAT
*
63020135 AATCATGAACTCAG-ACTACAACTC-ATGAGTTCAAATCACATA
1 AATCATAAACTCAGAAC-ACAACTCAATGAGTTCAAATCACATA
*
63020177 AATCATAAACTCAGAACACAACTCAATGAGTTCAGATCA
1 AATCATAAACTCAGAACACAACTCAATGAGTTCAAATCA
63020216 TGTAATTCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
42 20 0.57
43 15 0.43
ACGTcount: A:0.44, C:0.23, G:0.10, T:0.22
Consensus pattern (43 bp):
AATCATAAACTCAGAACACAACTCAATGAGTTCAAATCACATA
Found at i:63020943 original size:21 final size:21
Alignment explanation
Indices: 63020919--63020974 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
63020909 AACAGCGGTG
* *
63020919 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTATA
*
63020940 GCGGTGAGATTGGATACTATA
1 GCGGTGAGATTAGATACTATA
63020961 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
63020975 AACAGCGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTATA
Found at i:63022319 original size:13 final size:13
Alignment explanation
Indices: 63022301--63022327 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63022291 CAGGTAGAGT
63022301 AACAATATCTTAA
1 AACAATATCTTAA
63022314 AACAATATCTTAA
1 AACAATATCTTAA
63022327 A
1 A
63022328 TTTTTGTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
AACAATATCTTAA
Found at i:63026188 original size:26 final size:26
Alignment explanation
Indices: 63026134--63026189 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 26
63026124 ATTATTATTC
*
63026134 TTTAATATATATATATTATGCATATAT
1 TTTAATATATATATATTAT-CATACAT
63026161 TTTAATACTATAT-TATATAT-ATACAT
1 TTTAATA-TATATATAT-TATCATACAT
63026187 TTT
1 TTT
63026190 TACAGTATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
26 8 0.31
27 10 0.38
28 8 0.31
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (26 bp):
TTTAATATATATATATTATCATACAT
Found at i:63026260 original size:27 final size:27
Alignment explanation
Indices: 63026204--63026264 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
63026194 GTATGCATAC
* * * * *
63026204 ATACTTTTAACATTATATTTTGTATGT
1 ATACTCTTAACATCATATTATATATAT
63026231 ATACTCTTAACATCATATTATATATAT
1 ATACTCTTAACATCATATTATATATAT
63026258 ATA-TCTT
1 ATACTCTT
63026265 GTACAAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.34, C:0.11, G:0.03, T:0.51
Consensus pattern (27 bp):
ATACTCTTAACATCATATTATATATAT
Found at i:63026636 original size:15 final size:15
Alignment explanation
Indices: 63026618--63026651 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
63026608 TATATACTAT
63026618 GTATACATATATTTA
1 GTATACATATATTTA
**
63026633 GTATGTATATATTTA
1 GTATACATATATTTA
63026648 GTAT
1 GTAT
63026652 TATTACACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (15 bp):
GTATACATATATTTA
Found at i:63027190 original size:11 final size:11
Alignment explanation
Indices: 63027174--63027198 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63027164 CGCCCTTCTC
63027174 AAAAAACTAAA
1 AAAAAACTAAA
63027185 AAAAAACTAAA
1 AAAAAACTAAA
63027196 AAA
1 AAA
63027199 CTAAAACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAACTAAA
Found at i:63039020 original size:74 final size:75
Alignment explanation
Indices: 63038898--63039062 Score: 235
Period size: 74 Copynumber: 2.2 Consensus size: 75
63038888 TCAATTTCTA
* * * *
63038898 TTCAATTTATATTTTTCAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGGGCCTC-GAGGCAT
1 TTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GGCAA
63038962 GCTGAGGTATT
65 GCTGAGGTATT
* *
63038973 TTCAATTTCTATTTTT-AAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGGGCAAG
1 TTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAAG
63039037 CTGAGGTATT
66 CTGAGGTATT
* *
63039047 TTCAATTCCTTTTTTT
1 TTCAATTTCTATTTTT
63039063 TTTTGCATGT
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
74 65 0.80
75 16 0.20
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.38
Consensus pattern (75 bp):
TTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAAG
CTGAGGTATT
Found at i:63039269 original size:14 final size:13
Alignment explanation
Indices: 63039236--63039269 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
63039226 GCTGAGGTAA
63039236 TTTCAATTTCTGT
1 TTTCAATTTCTGT
63039249 TTCTCAATTTCTGCT
1 TT-TCAATTTCTG-T
63039264 TTTCAA
1 TTTCAA
63039270 AAAAAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 14 0.74
15 3 0.16
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (13 bp):
TTTCAATTTCTGT
Found at i:63039413 original size:88 final size:87
Alignment explanation
Indices: 63039152--63039445 Score: 349
Period size: 88 Copynumber: 3.3 Consensus size: 87
63039142 ATTCTGTTGC
* * * *
63039152 TCAAATTTTGTTTTT-AATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TCAAATTCTGTTTTTCAAATTCT-GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
63039216 CTCAGGACAC-GCTGAGGTAATT
65 CTCGGGTCACTGCTGAGGTATTT
* * *
63039238 TCAATTTCTGTTTCTCAATTTCTGCTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TCAAATTCTGTTTTTCAAATTCTG-TTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
63039303 AGCCTTGGCTCACATGCTGAGGTATTT
62 AGCCTCGGGTCAC-TGCTGAGGTATTT
* *
63039330 TCAAAATCTGTTTTTCAAATTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TCAAATTCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
63039395 TCGGGTCACGTGCCGAGGTATTC
66 TCGGGTCAC-TGCTGAGGTATTT
* *
63039418 TCAAATTCTGTCTTTCAAACTCTGTTTT
1 TCAAATTCTGTTTTTCAAATTCTGTTTT
63039446 TAATTTTTAC
Statistics
Matches: 177, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
86 12 0.07
87 12 0.07
88 78 0.44
90 40 0.23
91 5 0.03
92 30 0.17
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (87 bp):
TCAAATTCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCGGGTCACTGCTGAGGTATTT
Found at i:63039549 original size:280 final size:275
Alignment explanation
Indices: 63038974--63039726 Score: 877
Period size: 280 Copynumber: 2.7 Consensus size: 275
63038964 TGAGGTATTT
* * *
63038974 TCAATTTCT-ATTTTTAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGGGCA-A
1 TCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT---GGCACA
**
63039036 GCTGAGGTATTTTC-AATTCCT-TTTTT-TTTTTGCATGTTTTCAAAAAAATCAACTCATATTGC
63 GCTGAGGTATTTTCAAATT-CTGTTTTTCAATTT--ATGTTTTC--AAAAATCAACTCATATTGC
* * * * * *
63039098 AAGAGGTGAGTTGAGCCTTGGGCCACATACCAAGGTATTTTCAAATTCTGTTGCTCAAATTTTGT
123 GAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATTTTCAAATTCTGTT-TTCAAATTATGT
* *
63039163 TTTTAATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
187 TTTTAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGC
*
63039228 TGAGGTAATTTCAATTTCTGTTTC
252 CGAGGTAATTTCAATTTCTGTTTC
63039252 TCAATTTCTGCTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACA
1 TCAATTTCTGCTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG--CACA
* *
63039317 TGCTGAGGTATTTTCAAAATCTGTTTTTCAAATTATGTTTTCAAAAATCAACTCATATTGCGAGA
63 -GCTGAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGA
* * * * *
63039382 GGTGAGTTGAGCCTCGGGTCACGTGCCGAGGTATTCTCAAATTCTGTCTTTCAAACTCTGTTTTT
127 GGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATTTTCAAATTCTGT-TTTCAAATTATGTTTTT
* * *
63039447 AATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCACATGC
191 AATTTCTACTTTTCAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG---ACACGC
63039511 CGAGGT-ATTTCCAATTTCTGTTT-
252 CGAGGTAATTT-CAATTTCTGTTTC
* *
63039534 T-AA-TTCATG-TTTTC-AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGG-ACAC
1 TCAATTTC-TGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCACA-
* * * *
63039594 GCTAAGGTATTTTCAATTTTTGTTTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCG
63 GCTGAGGTATTTTCAAATTCTG---TTTTTCAATTTAT-GTTTTCAAAAATCAACTCATATTGCG
*
63039659 AGAGGTGAGTTGAGCCTTGGGTTCACATGCCGAGGTATTTTCAAAATCTGTTTTTCAAATTATGT
124 AGAGGTGAGTTGAGCCTTGGG-TCACATGCCGAGGTATTTTCAAATTCTG-TTTTCAAATTATGT
63039724 TTT
187 TTT
63039727 CAAAAATCAA
Statistics
Matches: 413, Mismatches: 38, Indels: 45
0.83 0.08 0.09
Matches are distributed among these distances:
276 21 0.05
278 48 0.12
279 18 0.04
280 185 0.45
281 79 0.19
282 30 0.07
283 30 0.07
284 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (275 bp):
TCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCACAGCT
GAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTTGGGTCACATGCCGAGGTATTTTCAAATTCTGTTTTCAAATTATGTTTTTAATTT
CTACTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCCGAGGTAAT
TTCAATTTCTGTTTC
Found at i:63039636 original size:17 final size:17
Alignment explanation
Indices: 63039603--63039637 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
63039593 CGCTAAGGTA
* *
63039603 TTTTCAATTTTTGTTTT
1 TTTTCAATTTATATTTT
63039620 TTTTCAATTTATATTTT
1 TTTTCAATTTATATTTT
63039637 T
1 T
63039638 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTCAATTTATATTTT
Found at i:63039761 original size:89 final size:88
Alignment explanation
Indices: 63039430--63039867 Score: 371
Period size: 87 Copynumber: 5.0 Consensus size: 88
63039420 AAATTCTGTC
* * * *
63039430 TTTCAAACTCTGTTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTCAAATTCTGTTTTTAAATTATAGTTTTCAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGA
63039495 GCCTTGGCTCACATGCCGAGGTAT
65 GCCTTGGCTCACATGCCGAGGTAT
* *
63039519 TTCCAATTTCTG-TTTT-AATTCAT-GTTTTCAAAAAATCAACTCATATTGCGA-AAGGTGAGTT
1 TTTCAAATTCTGTTTTTAAATT-ATAGTTTTC-AAAAATCAACTCATATTGCGAGAA-GTGAGTT
* * **
63039580 GAGCCTCAGG---ACACGCTAAGGTAT
63 GAGCCT-TGGCTCACATGCCGAGGTAT
* * * * *
63039604 TTTCAATTTTTGTTTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
1 TTTCAAATTCTG---TTTTT-AAATTATAGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGT
*
63039669 TGAGCCTTGGGTTCACATGCCGAGGTAT
62 TGAGCCTT-GGCTCACATGCCGAGGTAT
* * *
63039697 TTTCAAAATCTGTTTTTCAAATTAT-GTTTTCAAAAATCAACTCATATCGCGAGAAGTGAATTGA
1 TTTCAAATTCTGTTTTT-AAATTATAGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
* * *
63039761 GCCTTGGCTCACTTGCTGAGCTAT
65 GCCTTGGCTCACATGCCGAGGTAT
* * * * * * *
63039785 TTTC-AATCCCTG-TTTT-AA-TATCTGTTTTCAAAGAGTGAATTCGTATTGCGAGAAATGAGTT
1 TTTCAAAT-TCTGTTTTTAAATTAT-AGTTTTCAAA-AATCAACTCATATTGCGAGAAGTGAGTT
* *
63039846 AAG-CTTAGGATCACATGCCGAG
63 GAGCCTT-GGCTCACATGCCGAG
63039868 TAAAGAATAA
Statistics
Matches: 284, Mismatches: 44, Indels: 44
0.76 0.12 0.12
Matches are distributed among these distances:
84 3 0.01
85 23 0.08
86 14 0.05
87 78 0.27
88 34 0.12
89 53 0.19
90 50 0.18
91 9 0.03
93 20 0.07
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (88 bp):
TTTCAAATTCTGTTTTTAAATTATAGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
CCTTGGCTCACATGCCGAGGTAT
Found at i:63041897 original size:27 final size:27
Alignment explanation
Indices: 63041841--63041901 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
63041831 CTATGCATAC
* * * * *
63041841 ATACTTTTAACATTATATTTTGTATGT
1 ATACTCTTAACATCATATTATATATAT
63041868 ATACTCTTAACATCATATTATATATAT
1 ATACTCTTAACATCATATTATATATAT
63041895 ATA-TCTT
1 ATACTCTT
63041902 GTACAAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.34, C:0.11, G:0.03, T:0.51
Consensus pattern (27 bp):
ATACTCTTAACATCATATTATATATAT
Found at i:63042273 original size:15 final size:15
Alignment explanation
Indices: 63042255--63042288 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
63042245 TATATACTAT
63042255 GTATACATATATTTA
1 GTATACATATATTTA
**
63042270 GTATGTATATATTTA
1 GTATACATATATTTA
63042285 GTAT
1 GTAT
63042289 TATTACACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (15 bp):
GTATACATATATTTA
Found at i:63042826 original size:11 final size:11
Alignment explanation
Indices: 63042810--63042834 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63042800 CGTCCTTCTC
63042810 AAAAAACTAAA
1 AAAAAACTAAA
63042821 AAAAAACTAAA
1 AAAAAACTAAA
63042832 AAA
1 AAA
63042835 CTAAAACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAACTAAA
Found at i:63056128 original size:40 final size:40
Alignment explanation
Indices: 63056065--63056142 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
63056055 TGCAGTACCT
*
63056065 TATGGTGTGTAAGGACGGATGGGTCGATGCTATCCCCATA
1 TATGGTGTGCAAGGACGGATGGGTCGATGCTATCCCCATA
* * **
63056105 TATGGTGTGCAAGGATGGGTGGGTCGATTTTATCCCCA
1 TATGGTGTGCAAGGACGGATGGGTCGATGCTATCCCCA
63056143 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (40 bp):
TATGGTGTGCAAGGACGGATGGGTCGATGCTATCCCCATA
Found at i:63060136 original size:26 final size:24
Alignment explanation
Indices: 63060100--63060151 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
63060090 AAATGTATAT
*
63060100 TTTAAATATTTTATAATATTTGTTTA
1 TTTAAACATTTT-TAA-ATTTGTTTA
*
63060126 TTTAAACATTTTTTAATTTGTTTA
1 TTTAAACATTTTTAAATTTGTTTA
63060150 TT
1 TT
63060152 ATTTGTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.46
25 2 0.08
26 11 0.46
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (24 bp):
TTTAAACATTTTTAAATTTGTTTA
Found at i:63065996 original size:62 final size:63
Alignment explanation
Indices: 63065846--63066007 Score: 156
Period size: 62 Copynumber: 2.6 Consensus size: 63
63065836 CGTATAACAT
* *** *
63065846 ACTGTTCATTATATAAAACCACACGAATAAGGACACA-AG-CGTGTACCCAGGCCGTGTAACTC
1 ACTGTTCATTGTATAAAACCACACGGCCAAGG-CACATGGACGTGTACCCAGGCCGTGTAACTC
* * * *
63065908 ACTGTTCATTGTATAAAACCACACGGCC-AGGGACATGGACGTGTGCCCAGGCCGTGTGACTT
1 ACTGTTCATTGTATAAAACCACACGGCCAAGGCACATGGACGTGTACCCAGGCCGTGTAACTC
*
63065970 ACTG-TC-TGTGCT-TAAAATCCATACGGCCAAGGCACATG
1 ACTGTTCAT-TG-TATAAAA-CCACACGGCCAAGGCACATG
63066008 AGCGTATAAC
Statistics
Matches: 83, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
60 4 0.05
61 13 0.16
62 58 0.70
63 8 0.10
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (63 bp):
ACTGTTCATTGTATAAAACCACACGGCCAAGGCACATGGACGTGTACCCAGGCCGTGTAACTC
Found at i:63072246 original size:25 final size:22
Alignment explanation
Indices: 63072189--63072253 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 22
63072179 TTCTATTATT
63072189 TTTTTCTTTTTCCTTCTTTTTC
1 TTTTTCTTTTTCCTTCTTTTTC
*
63072211 TTTCTCCCTTTCTTCCTTCTTTATTC
1 TTT-T-TCTTT-TTCCTTCTTT-TTC
63072237 TATTTTCTTTTTACCTT
1 T-TTTTCTTTTT-CCTT
63072254 TTCCCTTCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
22 3 0.09
23 1 0.03
24 6 0.17
25 18 0.51
26 5 0.14
27 2 0.06
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTTCTTTTTCCTTCTTTTTC
Found at i:63073043 original size:124 final size:124
Alignment explanation
Indices: 63072818--63073066 Score: 320
Period size: 124 Copynumber: 2.0 Consensus size: 124
63072808 TGAACGGCCA
* * * * * *
63072818 TGTAACTCACAATTTATTGTATAAAACCATACGGCCAGGGACACAGGCGTGTGTCCAGGCCGTGT
1 TGTAACTCACAATTCATTGTATAAAACCAAACGGCCAGGGACACAGGCATATGCCCAAGCCGTGT
* * * * *
63072883 AACTCACTATTCATTGTATAAAACCTCGCAGTCAGGGACATGGGCGTATGCCCAAGCCG
66 AACTCACTATTCATAGTATAAAACCACACAGCCAGGGACATAGGCGTATGCCCAAGCCG
* * *
63072942 TGTAACTCACTATTCATTGTATAAAACCAAACGGCCAGGGATATCA-GCATATGCCCAAGCTGTG
1 TGTAACTCACAATTCATTGTATAAAACCAAACGGCCAGGGACA-CAGGCATATGCCCAAGCCGTG
* * * *
63073006 TAACTCACTGTTCATAGTATAAAACCACACAGCCAGGGACATAGGTGTGTGCCCAGGCCG
65 TAACTCACTATTCATAGTATAAAACCACACAGCCAGGGACATAGGCGTATGCCCAAGCCG
63073066 T
1 T
63073067 ATGATTTACT
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
124 104 0.98
125 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (124 bp):
TGTAACTCACAATTCATTGTATAAAACCAAACGGCCAGGGACACAGGCATATGCCCAAGCCGTGT
AACTCACTATTCATAGTATAAAACCACACAGCCAGGGACATAGGCGTATGCCCAAGCCG
Found at i:63073079 original size:62 final size:62
Alignment explanation
Indices: 63072818--63073066 Score: 284
Period size: 62 Copynumber: 4.0 Consensus size: 62
63072808 TGAACGGCCA
* * * * * * * *
63072818 TGTAACTCACAATTTATTGTATAAAACCATACGGCCAGGGACACAGGCGTGTGTCCAGGCCG
1 TGTAACTCACTATTCATTGTATAAAACCACACAGCCAGGGACATAGGCGTATGCCCAAGCCG
* * * *
63072880 TGTAACTCACTATTCATTGTATAAAACCTCGCAGTCAGGGACATGGGCGTATGCCCAAGCCG
1 TGTAACTCACTATTCATTGTATAAAACCACACAGCCAGGGACATAGGCGTATGCCCAAGCCG
* * * * *
63072942 TGTAACTCACTATTCATTGTATAAAACCAAACGGCCAGGGATATCA-GCATATGCCCAAGCTG
1 TGTAACTCACTATTCATTGTATAAAACCACACAGCCAGGGACAT-AGGCGTATGCCCAAGCCG
* * * * *
63073004 TGTAACTCACTGTTCATAGTATAAAACCACACAGCCAGGGACATAGGTGTGTGCCCAGGCCG
1 TGTAACTCACTATTCATTGTATAAAACCACACAGCCAGGGACATAGGCGTATGCCCAAGCCG
63073066 T
1 T
63073067 ATGATTTACT
Statistics
Matches: 154, Mismatches: 31, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
61 1 0.01
62 153 0.99
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (62 bp):
TGTAACTCACTATTCATTGTATAAAACCACACAGCCAGGGACATAGGCGTATGCCCAAGCCG
Found at i:63077321 original size:23 final size:21
Alignment explanation
Indices: 63077272--63077338 Score: 77
Period size: 18 Copynumber: 3.2 Consensus size: 21
63077262 AGACATTTTG
63077272 ATATCTACATAATTTAAAAAA
1 ATATCTACATAATTTAAAAAA
*
63077293 A-A--TACATAAATTAAATATAA
1 ATATCTACATAATTTAAA-A-AA
63077313 ATATCTACATAATTTAAAAAA
1 ATATCTACATAATTTAAAAAA
63077334 TATAT
1 -ATAT
63077339 AAATTAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
18 12 0.32
19 1 0.03
20 4 0.11
21 4 0.11
22 5 0.13
23 12 0.32
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.34
Consensus pattern (21 bp):
ATATCTACATAATTTAAAAAA
Found at i:63077343 original size:39 final size:40
Alignment explanation
Indices: 63077272--63077351 Score: 135
Period size: 39 Copynumber: 2.0 Consensus size: 40
63077262 AGACATTTTG
63077272 ATATCTACATAATTTAAAAAAAATACATAAATTAAATATAA
1 ATATCTACATAATTT-AAAAAAATACATAAATTAAATATAA
*
63077313 ATATCTACATAATTT-AAAAAATATATAAATTAAATATAA
1 ATATCTACATAATTTAAAAAAATACATAAATTAAATATAA
63077352 TTAATTTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 23 0.61
41 15 0.39
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (40 bp):
ATATCTACATAATTTAAAAAAATACATAAATTAAATATAA
Found at i:63078106 original size:14 final size:14
Alignment explanation
Indices: 63078089--63078132 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
63078079 TTATAAAACA
63078089 AATAGTAAACAAAT
1 AATAGTAAACAAAT
*
63078103 AATAATAAACAAAT
1 AATAGTAAACAAAT
*
63078117 AA-AGAAAAACAAAT
1 AATAG-TAAACAAAT
63078131 AA
1 AA
63078133 ATAAAGAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 1 0.04
14 25 0.96
ACGTcount: A:0.73, C:0.07, G:0.05, T:0.16
Consensus pattern (14 bp):
AATAGTAAACAAAT
Found at i:63078135 original size:26 final size:24
Alignment explanation
Indices: 63078106--63078245 Score: 84
Period size: 26 Copynumber: 5.3 Consensus size: 24
63078096 AACAAATAAT
*
63078106 AATAAACAAATAAAGAAAAACAAATA
1 AATAAA-AAA-AAAGAAAAACAAACA
* *
63078132 AATAAAGAAAAAGGAAATAAAGAAAAACA
1 AATAAA-AAAAA--AGA-AAA-ACAAACA
*
63078161 AATAAAAAATAGAA-AAAGGACAAACA
1 AATAAAAAA-A-AAGAAA-AACAAACA
63078187 AATAAAAAAAAAAGAAAAAGACAAACA
1 AAT-AAAAAAAAAG-AAAA-ACAAACA
* * *
63078214 AATAAAAAAACAGAAAAAGGAAATA
1 AATAAAAAAAAAGAAAAA-CAAACA
63078239 AATAAAA
1 AATAAAA
63078246 GTAAATAAAA
Statistics
Matches: 92, Mismatches: 10, Indels: 25
0.72 0.08 0.20
Matches are distributed among these distances:
24 1 0.01
25 19 0.21
26 30 0.33
27 22 0.24
28 7 0.08
29 12 0.13
30 1 0.01
ACGTcount: A:0.77, C:0.06, G:0.09, T:0.08
Consensus pattern (24 bp):
AATAAAAAAAAAGAAAAACAAACA
Found at i:63078149 original size:19 final size:18
Alignment explanation
Indices: 63078113--63078177 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
63078103 AATAATAAAC
63078113 AAATAAAGAAAAACAAAT
1 AAATAAAGAAAAACAAAT
**
63078131 AAATAAAG--AAA-AAGG
1 AAATAAAGAAAAACAAAT
63078146 AAATAAAGAAAAACAAAT
1 AAATAAAGAAAAACAAAT
*
63078164 AAAAAATAGAAAAA
1 AAATAA-AGAAAAA
63078178 GGACAAACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
15 10 0.26
16 3 0.08
17 3 0.08
18 15 0.39
19 7 0.18
ACGTcount: A:0.78, C:0.03, G:0.09, T:0.09
Consensus pattern (18 bp):
AAATAAAGAAAAACAAAT
Found at i:63078151 original size:33 final size:34
Alignment explanation
Indices: 63078113--63078180 Score: 120
Period size: 33 Copynumber: 2.0 Consensus size: 34
63078103 AATAATAAAC
*
63078113 AAATAAAGAAAAACAAATAAATAA-AGAAAAAGG
1 AAATAAAGAAAAACAAATAAAAAATAGAAAAAGG
63078146 AAATAAAGAAAAACAAATAAAAAATAGAAAAAGG
1 AAATAAAGAAAAACAAATAAAAAATAGAAAAAGG
63078180 A
1 A
63078181 CAAACAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 23 0.70
34 10 0.30
ACGTcount: A:0.76, C:0.03, G:0.12, T:0.09
Consensus pattern (34 bp):
AAATAAAGAAAAACAAATAAAAAATAGAAAAAGG
Found at i:63078223 original size:27 final size:27
Alignment explanation
Indices: 63078164--63078245 Score: 105
Period size: 26 Copynumber: 3.1 Consensus size: 27
63078154 AAAAACAAAT
*
63078164 AAAAAATAGAAAAAGGACAAACAAATAA
1 AAAAAAAAGAAAAA-GACAAACAAATAA
63078192 AAAAAAAAGAAAAAGACAAACAAAT-A
1 AAAAAAAAGAAAAAGACAAACAAATAA
* * *
63078218 AAAAAACAGAAAAAG-GAAATAAATAA
1 AAAAAAAAGAAAAAGACAAACAAATAA
63078244 AA
1 AA
63078246 GTAAATAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.14
26 18 0.37
27 11 0.22
28 13 0.27
ACGTcount: A:0.78, C:0.06, G:0.10, T:0.06
Consensus pattern (27 bp):
AAAAAAAAGAAAAAGACAAACAAATAA
Found at i:63078252 original size:88 final size:87
Alignment explanation
Indices: 63078095--63078271 Score: 232
Period size: 88 Copynumber: 2.0 Consensus size: 87
63078085 AACAAATAGT
* * *
63078095 AAACAAATAATAATAAACAAATAAAGAAAAACAAATAAATAAAGAAAAAGGAAATAAAGAAAAAC
1 AAACAAATAATAATAAAAAAAAAAAGAAAAACAAATAAAAAAAGAAAAAGGAAATAAAGAAAAAC
*
63078160 AAATAAAAAATAGAAAAAGGAC
66 AAATAAAAAACAGAAAAAGGAC
* *
63078182 AAACAAATAA-AA-AAAAAAGAAAAAGACAAACAAATAAAAAAACAGAAAAAGGAAATAAATAAA
1 AAACAAATAATAATAAAAAA-AAAAAGAAAAACAAAT-AAAAAA-AGAAAAAGGAAATAAAGAAA
** *
63078245 AGTAAATAAAAAACATAAAAAGGAC
63 AACAAATAAAAAACAGAAAAAGGAC
63078270 AA
1 AA
63078272 TAGGCAATAG
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
85 5 0.06
86 16 0.21
87 15 0.19
88 42 0.54
ACGTcount: A:0.76, C:0.06, G:0.09, T:0.09
Consensus pattern (87 bp):
AAACAAATAATAATAAAAAAAAAAAGAAAAACAAATAAAAAAAGAAAAAGGAAATAAAGAAAAAC
AAATAAAAAACAGAAAAAGGAC
Found at i:63079685 original size:30 final size:30
Alignment explanation
Indices: 63079651--63079707 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
63079641 TTTTTGAGCA
* *
63079651 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
*
63079681 TAGGGGCAAAATGGTTATTTTACCAAA
1 TAGGGGCAAAATGGTCATTTTACCAAA
63079708 AATGTGAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:63080290 original size:47 final size:47
Alignment explanation
Indices: 63080097--63080314 Score: 171
Period size: 47 Copynumber: 4.7 Consensus size: 47
63080087 TATGAGAACT
* * * * *
63080097 AGTGTAAGACCATGTTTAGGACATGGCATCGACATTGAGACGA-GGGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGA-TATGAGCC
* * ** * *
63080145 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACCTCGAGACGTAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGAGATATGAGCC
** *
63080191 AGTGTAAGA-CATGTCTGGGACAT-GCATCTG-CTACAGGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA-GAT-ATGAGCC
* *
63080237 AATGTAAGACCATGTCTTGGACATGGCATCGACTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCC
* *
63080284 AGTGTAAGACCATGCCTGGGATATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
63080315 GCACCTTACC
Statistics
Matches: 137, Mismatches: 24, Indels: 19
0.76 0.13 0.11
Matches are distributed among these distances:
45 3 0.02
46 56 0.41
47 61 0.45
48 17 0.12
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCC
Found at i:63087927 original size:80 final size:81
Alignment explanation
Indices: 63087827--63088012 Score: 200
Period size: 80 Copynumber: 2.3 Consensus size: 81
63087817 CCACACCAAG
* * * * * *
63087827 GCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATAG
1 GCCTTCGGGACTTAGCCCGGATATCAGCCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAG
63087891 AATGACTC-GCACGAA-T
66 AATGAC-CAGCA-GAATT
* * *
63087907 GCCTTCGGGTCTTAGCCCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATATCAGCCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAG
** *
63087971 AATTTCCAGCATAATT
66 AATGACCAGCAGAATT
* *
63087987 GTCTTCGGGGCTTAGCCCGGATATCA
1 GCCTTCGGGACTTAGCCCGGATATCA
63088013 TTCAATTTCT
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
79 4 0.05
80 83 0.94
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
GCCTTCGGGACTTAGCCCGGATATCAGCCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAG
AATGACCAGCAGAATT
Found at i:63087970 original size:40 final size:38
Alignment explanation
Indices: 63087827--63087971 Score: 146
Period size: 40 Copynumber: 3.7 Consensus size: 38
63087817 CCACACCAAG
* * * *
63087827 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-ACGACTAGCAC-AAT
* * * *
63087867 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATA-TACGACTAGCAC-AAT
* *
63087907 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATT
1 GCCTTCGGGTCTTAACCCGGATATA-CGACTAGCACAA-T
63087947 GCCTTCGGGTCTTAACCCGGATATA
1 GCCTTCGGGTCTTAACCCGGATATA
63087972 ATTTCCAGCA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 86 0.97
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
GCCTTCGGGTCTTAACCCGGATATACGACTAGCACAAT
Found at i:63087987 original size:40 final size:38
Alignment explanation
Indices: 63087862--63088010 Score: 138
Period size: 40 Copynumber: 3.8 Consensus size: 38
63087852 ACGATTTGCA
* *
63087862 CAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-G
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAATTAC-CAG
*** *
63087900 CACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAG
1 CA--AATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* *
63087940 CACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAG
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* *
63087980 CATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATAT
63088011 CATTCAATTT
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
38 2 0.02
39 2 0.02
40 87 0.96
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (38 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
Found at i:63091032 original size:46 final size:46
Alignment explanation
Indices: 63090981--63091146 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 46
63090971 TGTGAGCTAG
* *
63090981 TGTAAGACATGTCTGGGACATGCATCTGCCTT-ATTATAAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCTGCCTTGA-GATAAGAGCCAA
* * * * ** * *
63091027 TGTAAGACCATGTTTTGGACATGGCATCGGCATTGAGACGAGGGCTAA
1 TGTAAGA-CATGTCTGGGACAT-GCATCTGCCTTGAGATAAGAGCCAA
* *
63091075 TGTAAGACATGTCTGGGACATGCAT-TGGCCTTGAGATGTA-AGTCAA
1 TGTAAGACATGTCTGGGACATGCATCT-GCCTTGAGAT-AAGAGCCAA
63091121 TGTAAGACATGTCTGGGACATGCATC
1 TGTAAGACATGTCTGGGACATGCATC
63091147 CGCTACGGGA
Statistics
Matches: 95, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
46 47 0.49
47 25 0.26
48 22 0.23
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCTGCCTTGAGATAAGAGCCAA
Found at i:63091165 original size:46 final size:46
Alignment explanation
Indices: 63091073--63091194 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 46
63091063 GACGAGGGCT
** *
63091073 AATGTAAGACATGTCTGGGACATGCATTGGCCTTGAGATGTAAGTC
1 AATGTAAGACATGTCTGGGACATGCATCCGCCTCGAGATGTAAGTC
*
63091119 AATGTAAGACATGTCTGGGACATGCATCCG-CTACGGGATG-ATAGTC
1 AATGTAAGACATGTCTGGGACATGCATCCGCCT-CGAGATGTA-AGTC
* *
63091165 AGTGTAAGGCCATGTCTGGGACATGGCATC
1 AATGTAA-GACATGTCTGGGACAT-GCATC
63091195 AAATTAAGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
45 3 0.05
46 43 0.65
47 15 0.23
48 5 0.08
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AATGTAAGACATGTCTGGGACATGCATCCGCCTCGAGATGTAAGTC
Found at i:63096230 original size:2 final size:2
Alignment explanation
Indices: 63096225--63096256 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
63096215 ATTCAAATTC
63096225 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63096257 TACAGATTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63099094 original size:26 final size:24
Alignment explanation
Indices: 63099063--63099112 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
63099053 AAATAAAAAA
*
63099063 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
63099089 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
63099113 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:63099132 original size:21 final size:21
Alignment explanation
Indices: 63099083--63099141 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
63099073 ATAATAAATC
*
63099083 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
63099103 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
63099125 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
63099142 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:63114033 original size:4 final size:4
Alignment explanation
Indices: 63114024--63114054 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
63114014 TCATCTCCCC
*
63114024 TTAT TTAT TTAT TTAT TTAT TTAT TTTT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA
63114055 GCAAGTTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:63117553 original size:43 final size:43
Alignment explanation
Indices: 63117505--63117598 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
63117495 ACACGTCGCT
**
63117505 AAAGGTCAGGACCTTTGGCGGCGCTTTTCCCCCAAACGCCGCC
1 AAAGGTCAGGACCTTTGGCGGCGCTTTTCCAACAAACGCCGCC
*
63117548 AAAGGTCAGGACCTTTGGCGGCGCTTTTCCAACAAACGCCGCT
1 AAAGGTCAGGACCTTTGGCGGCGCTTTTCCAACAAACGCCGCC
*
63117591 ATAGGTCA
1 AAAGGTCA
63117599 TGAAATTTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (43 bp):
AAAGGTCAGGACCTTTGGCGGCGCTTTTCCAACAAACGCCGCC
Found at i:63118523 original size:43 final size:42
Alignment explanation
Indices: 63118446--63118593 Score: 228
Period size: 42 Copynumber: 3.5 Consensus size: 42
63118436 TTTTTCAAAT
*
63118446 AAACGCCACTAAAGATCATGACCTTTAGCGCGCTTTTTCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGCGCTTTTTCCAC
63118488 AAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTTCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCG-CGCTTTTTCCAC
* *
63118531 AAACGGCGCTAAAGATCAAGACCTTTAGCGGCGC-TTTTCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGC-GCGCTTTTTCCAC
63118573 AAACGCCGCTAAA-AGTCATGA
1 AAACGCCGCTAAAGA-TCATGA
63118594 AATTCAAAAG
Statistics
Matches: 98, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
41 1 0.01
42 54 0.55
43 42 0.43
44 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGCGCTTTTTCCAC
Found at i:63122851 original size:18 final size:19
Alignment explanation
Indices: 63122814--63122852 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
63122804 AAATCATATT
63122814 TATTATTTTCATATAAAAA
1 TATTATTTTCATATAAAAA
*
63122833 TATTATTTTGATA-AAAAA
1 TATTATTTTCATATAAAAA
63122851 TA
1 TA
63122853 AAAAAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTATTTTCATATAAAAA
Found at i:63123761 original size:41 final size:41
Alignment explanation
Indices: 63123552--63123761 Score: 239
Period size: 41 Copynumber: 5.1 Consensus size: 41
63123542 GTTATATAAC
* *
63123552 TTTTAGTGGCGTTTT-ACTAAAAGCGCCGCTAATGCTCTGG
1 TTTTAGCGGCGTTTTAACAAAAAGCGCCGCTAATGCTCTGG
*
63123592 TCTTTAGCGGCGTTTT-ACGAAAAGCGCCGCTAATGCTCTGG
1 T-TTTAGCGGCGTTTTAACAAAAAGCGCCGCTAATGCTCTGG
* * * *
63123633 TCTTTAGCGGCGTTTT-ACCAGAAGCGCCGCTAGTGCTCTGA
1 T-TTTAGCGGCGTTTTAACAAAAAGCGCCGCTAATGCTCTGG
** * * *
63123674 TTTTAGCGGCGTTTTAACAAAAAAAAGCCGCTATTGCTCAGT
1 TTTTAGCGGCGTTTTAAC-AAAAAGCGCCGCTAATGCTCTGG
*
63123716 TTTTAGCGGCGTTTTAACAAAAA-CGCCGCTATTGCTCTGTG
1 TTTTAGCGGCGTTTTAACAAAAAGCGCCGCTAATGCTCTG-G
63123757 TTTTA
1 TTTTA
63123762 CAATTTTTGC
Statistics
Matches: 150, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
40 29 0.19
41 87 0.58
42 34 0.23
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTAACAAAAAGCGCCGCTAATGCTCTGG
Found at i:63123800 original size:12 final size:12
Alignment explanation
Indices: 63123785--63123810 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63123775 GTTTTTTGAT
63123785 AAAACGCCGCTA
1 AAAACGCCGCTA
63123797 AAAACGCCGCTA
1 AAAACGCCGCTA
63123809 AA
1 AA
63123811 GCCCTATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:63124782 original size:5 final size:5
Alignment explanation
Indices: 63124774--63124803 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
63124764 TTTTTATTAG
*
63124774 TTAAA TTAAA TTAAA TTAAA TTAAT TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
63124804 ATTGCCACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TTAAA
Found at i:63125063 original size:21 final size:21
Alignment explanation
Indices: 63125013--63125056 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
63125003 TAGTTCCCCT
63125013 GAACAACATACTTGTTCAGGG
1 GAACAACATACTTGTTCAGGG
63125034 GAACAACATACTTGTTCAGGG
1 GAACAACATACTTGTTCAGGG
63125055 GA
1 GA
63125057 TGCACATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (21 bp):
GAACAACATACTTGTTCAGGG
Found at i:63127557 original size:13 final size:13
Alignment explanation
Indices: 63127539--63127563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63127529 GTGGAAGGAT
63127539 TTTGATTTGGGGA
1 TTTGATTTGGGGA
63127552 TTTGATTTGGGG
1 TTTGATTTGGGG
63127564 GAAAAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.40, T:0.48
Consensus pattern (13 bp):
TTTGATTTGGGGA
Found at i:63129024 original size:21 final size:22
Alignment explanation
Indices: 63128988--63129028 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
63128978 TGTTTTTTGG
63128988 AGTTTAGGGTTTTAGGGGTTAT
1 AGTTTAGGGTTTTAGGGGTTAT
*
63129010 AGTTTAGTG-TTTAGGGGTT
1 AGTTTAGGGTTTTAGGGGTT
63129029 TTTAGGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (22 bp):
AGTTTAGGGTTTTAGGGGTTAT
Found at i:63129200 original size:37 final size:39
Alignment explanation
Indices: 63129115--63129206 Score: 125
Period size: 41 Copynumber: 2.4 Consensus size: 39
63129105 ATTATATGAC
* *
63129115 TTTTAGCAGCGTTTTATCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAA--CTCTGGT
*
63129156 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCT-A-TCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAACTCTGGT
63129193 TTTTAGCGGCGTTT
1 TTTTAGCGGCGTTT
63129207 ATGTTCTGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
37 20 0.42
40 1 0.02
41 27 0.56
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (39 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAACTCTGGT
Found at i:63129219 original size:61 final size:63
Alignment explanation
Indices: 63129150--63129271 Score: 194
Period size: 61 Copynumber: 1.9 Consensus size: 63
63129140 CCGCTAATGC
63129150 TCTGGTTTTTAGCGGCGTTTTGCCAAAAGCGCCGCT-A-TCTGGTTTTTAGCGGCGTTTATGT
1 TCTGGTTTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAACTCTGGTTTTTAGCGGCGTTTATGT
* *
63129211 TCTGGTTTTTGGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTT
1 TCTGGTTTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAA--CTCTGGTTTTTAGCGGCGTTT
63129272 TACCAAAAGG
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
61 34 0.62
62 1 0.02
65 20 0.36
ACGTcount: A:0.12, C:0.20, G:0.28, T:0.39
Consensus pattern (63 bp):
TCTGGTTTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAACTCTGGTTTTTAGCGGCGTTTATGT
Found at i:63129264 original size:102 final size:105
Alignment explanation
Indices: 63129123--63129311 Score: 314
Period size: 102 Copynumber: 1.8 Consensus size: 105
63129113 ACTTTTAGCA
*
63129123 GCGTTTTATCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTGCCAAAAGCGCCGCT-A
1 GCGTTTTATCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAA
63129187 T-CT-GGTTTTTAGCGGCGTTTATGTTCTGGTTTTTGGCG
66 TGCTCGGTTTTTAGCGGCGTTTATGTTCTGGTTTTTGGCG
*
63129225 GCGTTTT-TCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGGGCCGCTA
1 GCGTTTTAT-CAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTA
*
63129289 ATGCTCTGTTTTTAGCGGCGTTT
65 ATGCTCGGTTTTTAGCGGCGTTT
63129312 TAACAAAAAA
Statistics
Matches: 80, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
101 1 0.01
102 59 0.74
103 2 0.03
104 2 0.03
105 16 0.20
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (105 bp):
GCGTTTTATCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAA
TGCTCGGTTTTTAGCGGCGTTTATGTTCTGGTTTTTGGCG
Found at i:63129311 original size:40 final size:40
Alignment explanation
Indices: 63129215--63129353 Score: 179
Period size: 41 Copynumber: 3.4 Consensus size: 40
63129205 TTATGTTCTG
* *
63129215 GTTTTTGGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCT
1 GTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT
*
63129255 GGTTTTTAGCGGCGTTTTACCAAAAGGGCCGCTAATGCTCT
1 -GTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT
* ** *
63129296 GTTTTTAGCGGCGTTTTAACAAAAAATGCCGCTATTGCTCT
1 GTTTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTCT
* *
63129337 GTTTTTAGTGGCATTTT
1 GTTTTTAGCGGCGTTTT
63129354 TGGTAAAACG
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 17 0.19
41 71 0.81
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (40 bp):
GTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT
Found at i:63134688 original size:12 final size:12
Alignment explanation
Indices: 63134671--63134695 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63134661 TTGTGTGTTC
63134671 TTTATTTTATTT
1 TTTATTTTATTT
63134683 TTTATTTTATTT
1 TTTATTTTATTT
63134695 T
1 T
63134696 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:63139527 original size:47 final size:46
Alignment explanation
Indices: 63139417--63139536 Score: 131
Period size: 47 Copynumber: 2.6 Consensus size: 46
63139407 ACTTGTGTGA
63139417 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCCACATTATGAGAGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG--CACATTATGAGAGC
* *
63139465 -C-AGTGTAAGACCATGTTTGGGACATGGCATCG-GCATTGA-GATGAGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGCACATT-ATGA-GAGC
*
63139511 GCTAGTGTAAGACATGTCTAGGACAT
1 GCTAGTGTAAGACATGTCTGGGACAT
63139537 ACATTGGTAT
Statistics
Matches: 62, Mismatches: 4, Indels: 13
0.78 0.05 0.16
Matches are distributed among these distances:
45 6 0.10
46 14 0.23
47 27 0.44
48 15 0.24
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCACATTATGAGAGC
Found at i:63139566 original size:46 final size:43
Alignment explanation
Indices: 63139516--63139636 Score: 109
Period size: 46 Copynumber: 2.7 Consensus size: 43
63139506 TGAGCGCTAG
*
63139516 TGTAAGACATGTCTAGGACATACATTGG-TATCGAGATGTAAGTCAA
1 TGTAAGACATGTCT-GGACATACATTGGCTAT-GAAATGT--GTCAA
* * *
63139562 TGTAAGATATGTCTGAGACATGCATTGGCTATGAAATGTGTCAG
1 TGTAAGACATGTCTG-GACATACATTGGCTATGAAATGTGTCAA
* *
63139606 TGTAAGACCATGTTTGGGACATGGCATTGGC
1 TGTAAGA-CATGTCT-GGACAT-ACATTGGC
63139637 AACTTACCCT
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
44 11 0.17
45 11 0.17
46 39 0.61
47 3 0.05
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACATGTCTGGACATACATTGGCTATGAAATGTGTCAA
Found at i:63155297 original size:28 final size:29
Alignment explanation
Indices: 63155266--63155328 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
63155256 GATGAAAATC
63155266 ATTTTATG-AGCCTAGGGGCT-AAATTGTA
1 ATTTTATGAAGCCTAGGGG-TAAAATTGTA
**
63155294 ATTTTATGAAAGTTTAGGGGTAAAATTGTA
1 ATTTTATG-AAGCCTAGGGGTAAAATTGTA
63155324 ATTTT
1 ATTTT
63155329 TCCAAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 8 0.27
29 1 0.03
30 21 0.70
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (29 bp):
ATTTTATGAAGCCTAGGGGTAAAATTGTA
Found at i:63158111 original size:13 final size:13
Alignment explanation
Indices: 63158093--63158118 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63158083 TACAACAAAT
63158093 TTAAGTAGAATCA
1 TTAAGTAGAATCA
63158106 TTAAGTAGAATCA
1 TTAAGTAGAATCA
63158119 ACTGTTGCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
TTAAGTAGAATCA
Found at i:63163385 original size:48 final size:48
Alignment explanation
Indices: 63163314--63163657 Score: 413
Period size: 48 Copynumber: 7.2 Consensus size: 48
63163304 CACTACTATT
* * *
63163314 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGAAATGGGATCGACATT
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
* * * * * * * *
63163362 ATTACGAGAGCTAGTGTAGGACCATATTTGGGATATGGCATCGGCATC
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
* *
63163410 ATTATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATC
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
*
63163458 ATTATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATC
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
* *
63163506 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
* * * * *
63163554 ATTATGAGAGCTAGTGTAAGAACATATCTGGGATATGGCATCGACATC
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
* * ** *
63163602 ATTAT-TAGAGCCAATGTAAGACCGTAACTGGGATATGGCATC-AGCATC
1 ATTATGT-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATC
*
63163650 GTTATGTG
1 ATTATGTG
63163658 TAAGATTTCC
Statistics
Matches: 259, Mismatches: 34, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.00
48 257 0.99
49 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (48 bp):
ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
Found at i:63163481 original size:96 final size:96
Alignment explanation
Indices: 63163314--63163643 Score: 464
Period size: 96 Copynumber: 3.4 Consensus size: 96
63163304 CACTACTATT
* * *
63163314 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGAAATGGGATCGACATTATTACGAGAGCTAGTGT
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTATTATGAGAGCTAGTGT
* *
63163379 AGGACCATATTTGGGATATGGCATCGGCATC
66 AAGACCATATTTGGGATATGGCATCGACATC
* * * * *
63163410 ATTATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATCATTATGTGAGCCAGTGT
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTATTATGAGAGCTAGTGT
* *
63163475 AAGACCATGTTTGGGACATGGCATCGACATC
66 AAGACCATATTTGGGATATGGCATCGACATC
*
63163506 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGAGAGCTAGTGT
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTATTATGAGAGCTAGTGT
* *
63163571 AAGAACATATCTGGGATATGGCATCGACATC
66 AAGACCATATTTGGGATATGGCATCGACATC
* * ** *
63163602 ATTAT-TAGAGCCAATGTAAGACCGTAACTGGGATATGGCATC
1 ATTATGT-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
63163644 AGCATCGTTA
Statistics
Matches: 206, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
95 1 0.00
96 205 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (96 bp):
ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTATTATGAGAGCTAGTGT
AAGACCATATTTGGGATATGGCATCGACATC
Found at i:63167059 original size:14 final size:15
Alignment explanation
Indices: 63167001--63167061 Score: 72
Period size: 15 Copynumber: 4.1 Consensus size: 15
63166991 GATATAGTAT
*
63167001 TTTATCTTGGGTTTC
1 TTTATCTTGGATTTC
63167016 TTTAT-TCTGGATTTC
1 TTTATCT-TGGATTTC
*
63167031 TCTATCTTGGATTTC
1 TTTATCTTGGATTTC
*
63167046 TTTA-CTTGGTTTTC
1 TTTATCTTGGATTTC
63167060 TT
1 TT
63167062 GTTATCTTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
14 12 0.30
15 27 0.68
16 1 0.03
ACGTcount: A:0.10, C:0.15, G:0.15, T:0.61
Consensus pattern (15 bp):
TTTATCTTGGATTTC
Found at i:63169614 original size:48 final size:47
Alignment explanation
Indices: 63169511--63169935 Score: 458
Period size: 48 Copynumber: 8.9 Consensus size: 47
63169501 CACTGCTATT
* * *
63169511 ATTATGTGAGCCAGTGTAAGACCATATCT-GGGCATGGCATCGACATT
1 ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATCG-CATC
* *
63169558 ATTACGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATCAGCATT
1 ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATC-GCATC
* * * * *
63169606 ATTACGAGAGCCAGTGTAAGGCTATATCTAGGATATGGCATTGGCATC
1 ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCA-TCGCATC
* * * *
63169654 ATTATGTGAGCCAGTGTAAGACCATATATGGGACATGACATCGACATC
1 ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATCG-CATC
* * *
63169702 ATTA-GTGAGCCAGTGTAAGACCATGTATAGGACATGGCATCGACATC
1 ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATCG-CATC
* * * *
63169749 ATTATAAGAGGCAGTGTAAGACCATGTCTAGGACAAGGCATCAGCATC
1 ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATC-GCATC
** * * ** *
63169797 ATTATCTGAGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCATT
1 ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATC-GCATC
* * *
63169845 ATTATGAGAGCCAGTGTAAGACCATATCTGGGATATGACATCGACATC
1 ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATCG-CATC
* * *
63169893 ATTATGAGAGCCAGTGTAAGACCATATTTGGGATATGGCATCG
1 ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATCG
63169936 GCATTGATAT
Statistics
Matches: 327, Mismatches: 44, Indels: 13
0.85 0.11 0.03
Matches are distributed among these distances:
47 74 0.23
48 250 0.76
49 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (47 bp):
ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGGCATCGCATC
Found at i:63169858 original size:191 final size:191
Alignment explanation
Indices: 63169511--63169935 Score: 575
Period size: 191 Copynumber: 2.2 Consensus size: 191
63169501 CACTGCTATT
* * * *
63169511 ATTATGTGAGCCAGTGTAAGACCATATCTGGGCATGGCATCGACATTATTACGAGAGCCAGTGTA
1 ATTATGTGAGCCAGTGTAAGACCATATATGGACATGGCATCGACATCATTACAAGAGCCAGTGTA
* * * * * *
63169576 AGACCATATCTAGGACATGGCATCAGCATTATTACGAGAGCCAGTGTAAGGCTATATCTAGGATA
66 AGACCATATCTAGGACAAGGCATCAGCATCATTACGAGAGCCAGTGTAAGACCATATCCAGGACA
* *
63169641 TGGCATTGGCATCATTATGTGAGCCAGTGTAAGACCATATATGGGACATGACATCGACATC
131 TGGCATCGGCATCATTATGAGAGCCAGTGTAAGACCATATATGGGACATGACATCGACATC
* * *
63169702 ATTA-GTGAGCCAGTGTAAGACCATGTATAGGACATGGCATCGACATCATTATAAGAGGCAGTGT
1 ATTATGTGAGCCAGTGTAAGACCATATAT-GGACATGGCATCGACATCATTACAAGAGCCAGTGT
* * * * *
63169766 AAGACCATGTCTAGGACAAGGCATCAGCATCATTATC-TGAGCTAGTGTAAGACCATGTCCGGGA
65 AAGACCATATCTAGGACAAGGCATCAGCATCATTA-CGAGAGCCAGTGTAAGACCATATCCAGGA
* * *
63169830 CATGGCATCGGCATTATTATGAGAGCCAGTGTAAGACCATATCTGGGATATGACATCGACATC
129 CATGGCATCGGCATCATTATGAGAGCCAGTGTAAGACCATATATGGGACATGACATCGACATC
* * *
63169893 ATTATGAGAGCCAGTGTAAGACCATATTTGGGATATGGCATCG
1 ATTATGTGAGCCAGTGTAAGACCATATAT-GGACATGGCATCG
63169936 GCATTGATAT
Statistics
Matches: 203, Mismatches: 28, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
190 22 0.11
191 147 0.72
192 34 0.17
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (191 bp):
ATTATGTGAGCCAGTGTAAGACCATATATGGACATGGCATCGACATCATTACAAGAGCCAGTGTA
AGACCATATCTAGGACAAGGCATCAGCATCATTACGAGAGCCAGTGTAAGACCATATCCAGGACA
TGGCATCGGCATCATTATGAGAGCCAGTGTAAGACCATATATGGGACATGACATCGACATC
Found at i:63169940 original size:96 final size:96
Alignment explanation
Indices: 63169511--63169940 Score: 508
Period size: 96 Copynumber: 4.5 Consensus size: 96
63169501 CACTGCTATT
* *
63169511 ATTATGTGAGCCAGTGTAAGACCATATCTGGG-CATGGCATCGACATTATTACGAGAGCCAGTGT
1 ATTATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTATTATGAGAGCCAGTGT
* *
63169575 AAGACCATATCTAGGACATGGCATCAGCATT
66 AAGACCATATCTAGGACATGACATCAGCATC
* * * * * * * * *
63169606 ATTACGAGAGCCAGTGTAAGGCTATATCTAGGATATGGCATTGGCATCATTATGTGAGCCAGTGT
1 ATTATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTATTATGAGAGCCAGTGT
* *
63169671 AAGACCATATATGGGACATGACATC-GACATC
66 AAGACCATATCTAGGACATGACATCAG-CATC
* * * * * * *
63169702 ATTA-GTGAGCCAGTGTAAGACCATGTATAGGACATGGCATCGACATCATTATAAGAGGCAGTGT
1 ATTATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTATTATGAGAGCCAGTGT
* * *
63169766 AAGACCATGTCTAGGACAAGGCATCAGCATC
66 AAGACCATATCTAGGACATGACATCAGCATC
* * * *
63169797 ATTATCTGAGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCATTATTATGAGAGCCAGTGT
1 ATTATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTATTATGAGAGCCAGTGT
* *
63169862 AAGACCATATCTGGGATATGACATC-GACATC
66 AAGACCATATCTAGGACATGACATCAG-CATC
* * *
63169893 ATTATGAGAGCCAGTGTAAGACCATATTTGGGATATGGCATCGGCATT
1 ATTATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATT
63169941 GATATGTGTA
Statistics
Matches: 278, Mismatches: 52, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
95 106 0.38
96 172 0.62
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (96 bp):
ATTATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTATTATGAGAGCCAGTGT
AAGACCATATCTAGGACATGACATCAGCATC
Found at i:63173817 original size:40 final size:40
Alignment explanation
Indices: 63173743--63173967 Score: 294
Period size: 40 Copynumber: 5.6 Consensus size: 40
63173733 AACCCAAGTA
* * * *
63173743 CCTTCGGGATTTAG-CCGGATATA-ACAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
63173782 CCTTCCGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
63173822 CCTTCGGGACTTAGCCCGGGTAAAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
* *
63173865 CCTTCAGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63173905 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63173945 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
63173968 CATCCGAATA
Statistics
Matches: 163, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.07
40 115 0.71
41 1 0.01
43 34 0.21
44 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63173866 original size:83 final size:83
Alignment explanation
Indices: 63173769--63173967 Score: 298
Period size: 83 Copynumber: 2.4 Consensus size: 83
63173759 GGATATAACA
* * *
63173769 ACTCGCACACATGCCTTCCGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
*
63173834 AGCCCGGGTAAAG-CAACT
66 AGCCCGGATAAAGTC-ACT
*
63173852 ACTCGCACAAATGCCTTCAGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
*
63173917 AGCCCGGATATAGTCACT
66 AGCCCGGATAAAGTCACT
*
63173935 A---GCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATAT
63173968 CATCCGAATA
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
80 30 0.28
83 76 0.71
84 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (83 bp):
ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
AGCCCGGATAAAGTCACT
Found at i:63176129 original size:46 final size:46
Alignment explanation
Indices: 63176031--63176199 Score: 182
Period size: 46 Copynumber: 3.5 Consensus size: 46
63176021 AAGTCAATGA
* *
63176031 CATGTCCCAGACATGGTCTTACATTGGCTCTCACATATCCAT-GTCGATGC
1 CATGTCCCAGACATGGTCTTACA----CTCTCACATCT-CATAGCCGATGC
**
63176081 CATGTCCCAGACATGGTCTTACACTAACACATCTCATAGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTCTCACATCTCATAGCCGATGC
*
63176127 CATGTCCTAGACATGGTCTTACACTGGCTCACATCT--TGAGGCCGATGC
1 CATGTCCCAGACATGGTCTTACACT--CTCACATCTCAT-A-GCCGATGC
*
63176175 CATGTCCCAGACATTGTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
63176200 GGCTCTCATA
Statistics
Matches: 105, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
45 3 0.03
46 40 0.38
47 1 0.01
48 38 0.36
50 23 0.22
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTCTCACATCTCATAGCCGATGC
Found at i:63176179 original size:48 final size:48
Alignment explanation
Indices: 63176031--63176254 Score: 217
Period size: 48 Copynumber: 4.7 Consensus size: 48
63176021 AAGTCAATGA
* ** * *
63176031 CATGTCCCAGACATGGTCTTACATTGGCTCTCACATATCCATGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTGG--CTCACATATTGAGGCCGATGC
** *
63176081 CATGTCCCAGACATGGTCTTACACT--AACACATCTCAT-A-GCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATAT--TGAGGCCGATGC
* *
63176127 CATGTCCTAGACATGGTCTTACACTGGCTCACATCTTGAGGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGGCCGATGC
* * * * *
63176175 CATGTCCCAGACATTGTCTTACACTGGCTCTCATAATGTGGCCTATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGGCCGATGC
* *
63176222 CATGTCCCAGACAT-GTCTTACACTAGCACACAT
1 CATGTCCCAGACATGGTCTTACACTGGCTCACAT
63176255 GTCACCTAAA
Statistics
Matches: 149, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
46 54 0.36
47 16 0.11
48 55 0.37
50 24 0.16
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGGCCGATGC
Found at i:63176254 original size:94 final size:94
Alignment explanation
Indices: 63176075--63176254 Score: 222
Period size: 94 Copynumber: 1.9 Consensus size: 94
63176065 ATATCCATGT
* *
63176075 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCATAGCCGATGCCATGTCCTAGACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTAATAGCCGATGCCATGTCCCAGACA
* *
63176140 TGGTCTTACACTGGCTCACATCTTGAGGC
66 TGGTCTTACACTAGCACACATCTTGAGGC
* ** * * *
63176169 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTC-TCATAATGTGGCCTATG-CATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATC-TAA--TAGCCGATGCCATGTCCCAG
63176232 ACAT-GTCTTACACTAGCACACAT
63 ACATGGTCTTACACTAGCACACAT
63176255 GTCACCTAAA
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
93 2 0.03
94 51 0.70
95 13 0.18
96 7 0.10
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTAATAGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCACACATCTTGAGGC
Found at i:63182566 original size:96 final size:95
Alignment explanation
Indices: 63182366--63182739 Score: 293
Period size: 96 Copynumber: 3.9 Consensus size: 95
63182356 ATAGGCTAGG
* * * * * * * *
63182366 ATGCCGATGCCATGCCCCAGACATGGTCTTACACTAGC-TCATACATC-AAGTCGATGCCATGTC
1 ATGCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTTCACATATCTGA-CCGATGCCATGTC
* * *
63182429 CCGGACATGATCTTACACT-G-ACTATCGCAACCA
65 CCAGACATGGTCTTACACTAGCACTAT--C--TCA
* * *
63182462 AGGTCGATGCCATGTTCTAGACATGGTCTTACATTGGCTTTCACATATCTGTACCGATGCCATGT
1 ATGCCGATGCCATGTCCTAGACATGGTCTTACATTGGC-TTCACATATCTG-ACCGATGCCATGT
* * *
63182527 CCCAAACATGGTCTTACATTGGCAC-ATCTC-
64 CCCAGACATGGTCTTACACTAGCACTATCTCA
* * ** *
63182557 ATAGCCGATGCCATGTCCTAGATATGGTCTTGCATTAAC-TCACATCTC-GAGGCCGATGCCATG
1 AT-GCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTTCACATATCTGA--CCGATGCCATG
* *
63182620 TCCCAGACATGGTCTTACACTAGCTCTTGTCTCA
63 TCCCAGACATGGTCTTACACTAGCAC-TATCTCA
* * * * * *
63182654 ATGCCAATTCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATAATGTGACCGATG-CATGTC
1 ATGCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTTCACAT-ATCTGACCGATGCCATGTC
63182717 CCAGACAT-GTCTTACACTAGCAC
65 CCAGACATGGTCTTACACTAGCAC
63182740 ACATGTCACC
Statistics
Matches: 223, Mismatches: 41, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
92 1 0.00
93 1 0.00
94 55 0.25
95 15 0.07
96 105 0.47
97 3 0.01
98 10 0.04
99 27 0.12
100 4 0.02
101 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (95 bp):
ATGCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTTCACATATCTGACCGATGCCATGTCC
CAGACATGGTCTTACACTAGCACTATCTCA
Found at i:63184534 original size:108 final size:110
Alignment explanation
Indices: 63184335--63184535 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
63184325 TTTAAGGATA
* * *
63184335 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCCAGGAAATCTTGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* * *
63184400 CTATGTCAATACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
63184445 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
63184507 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
63184536 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 44 0.54
109 7 0.09
110 27 0.33
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:63184819 original size:27 final size:27
Alignment explanation
Indices: 63184784--63184837 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
63184774 TTAAGTAAGT
63184784 AAGAATTTAAATAAGTAAGTAAGTGAA
1 AAGAATTTAAATAAGTAAGTAAGTGAA
*
63184811 AAGAATTTAAATAAGTGAGTAAGTGAA
1 AAGAATTTAAATAAGTAAGTAAGTGAA
63184838 GAAGTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.20, T:0.26
Consensus pattern (27 bp):
AAGAATTTAAATAAGTAAGTAAGTGAA
Found at i:63184850 original size:27 final size:26
Alignment explanation
Indices: 63184775--63184847 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
63184765 TAAATTTGAT
63184775 TAAGTAAGT-AAGAA-TTTAAATAAG
1 TAAGTAAGTGAAGAAGTTTAAATAAG
63184799 TAAGTAAGTGAA-AAGAATTTAAATAAG
1 TAAGTAAGTGAAGAAG--TTTAAATAAG
*
63184826 TGAGTAAGTGAAGAAGTTTAAA
1 TAAGTAAGTGAAGAAGTTTAAA
63184848 ATATGTCTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
24 11 0.26
25 2 0.05
26 6 0.14
27 21 0.49
28 3 0.07
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGTAAGTGAAGAAGTTTAAATAAG
Found at i:63191111 original size:28 final size:28
Alignment explanation
Indices: 63191046--63191144 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
63191036 TCATGAATTG
* * *
63191046 GCACTAAGTGTGCGGGTTAAAATTGTATA
1 GCACTAAGTGTGCGAGTT-TAATTATATA
*
63191075 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
* *
63191103 GCACTAAGTGTGCGAGTTTTACTAT-TAA
1 GCACTAAGTGTGCGAGTTTAATTATAT-A
63191131 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63191145 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:63197587 original size:53 final size:53
Alignment explanation
Indices: 63197403--63197611 Score: 233
Period size: 53 Copynumber: 3.8 Consensus size: 53
63197393 ATTAGGGTTT
* * *
63197403 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * *
63197458 AAGGAAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGG-ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
63197514 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
63197567 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
63197612 TCAAAAGGAT
Statistics
Matches: 129, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
52 4 0.03
53 44 0.34
54 3 0.02
55 44 0.34
56 30 0.23
57 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:63197610 original size:108 final size:111
Alignment explanation
Indices: 63197410--63197611 Score: 304
Period size: 108 Copynumber: 1.8 Consensus size: 111
63197400 TTTAAGGATA
* *
63197410 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGTAAGGAAAATCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAAACCATGTAAG
*
63197475 ACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 ACCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
63197521 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGG-ATACCATGTAA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAAACCATGTAA
*
63197582 GACCATGTCAAGACATGGCAATGGTAAGTT
65 GACCATGTCAAGACATGGCAATGATAAGTT
63197612 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
108 40 0.48
109 10 0.12
110 7 0.08
111 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (111 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAAACCATGTAAG
ACCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:63198584 original size:93 final size:93
Alignment explanation
Indices: 63198472--63198643 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63198462 CGCCCATAAG
* *
63198472 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63198537 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
63198565 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63198630 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
63198644 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:63198640 original size:46 final size:46
Alignment explanation
Indices: 63198465--63198640 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
63198455 TGTAACCCGC
* * *
63198465 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
63198511 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
63198561 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63198604 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
63198641 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63199793 original size:11 final size:11
Alignment explanation
Indices: 63199777--63199802 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63199767 ATAGAATTCA
63199777 TCACGAAATTT
1 TCACGAAATTT
63199788 TCACGAAATTT
1 TCACGAAATTT
63199799 TCAC
1 TCAC
63199803 ACAATCATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.35
Consensus pattern (11 bp):
TCACGAAATTT
Found at i:63206126 original size:93 final size:93
Alignment explanation
Indices: 63206014--63206185 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
63206004 CGCCCATAAG
*
63206014 CGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
63206078 AACGAGCTCGGATGCCTAGTTACATTTCA
65 AACGAGCTCGGATGCCTAGTTACATTTCA
*
63206107 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
63206172 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
63206186 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:63206177 original size:46 final size:47
Alignment explanation
Indices: 63206007--63206182 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 47
63205997 TGTAACCCGC
*
63206007 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
* *
63206053 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-A-TTCGCAT
* * *
63206103 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
* *
63206146 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
63206183 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 62 0.56
47 30 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
Found at i:63207854 original size:24 final size:24
Alignment explanation
Indices: 63207824--63207876 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
63207814 TTTCATTTGA
63207824 TTCAATATGCAATTCATTTCCAGT
1 TTCAATATGCAATTCATTTCCAGT
**
63207848 TTCAATATGCAATTCATTTCTGGT
1 TTCAATATGCAATTCATTTCCAGT
63207872 TTCAA
1 TTCAA
63207877 CGATCTAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.43
Consensus pattern (24 bp):
TTCAATATGCAATTCATTTCCAGT
Found at i:63209417 original size:27 final size:27
Alignment explanation
Indices: 63209387--63209485 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
63209377 TTTAGCTTAC
*
63209387 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTCGATTTG
* * *
63209414 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTCGATTTG
* *
63209441 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTCGATTTG
63209468 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
63209486 CCCGATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTCGATTTG
Found at i:63209486 original size:54 final size:54
Alignment explanation
Indices: 63209387--63209493 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
63209377 TTTAGCTTAC
* * *
63209387 TAAAATTACCGAAATACGCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
63209441 TAAAATTACTGAAATAC-CTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACGCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
63209494 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.16
54 38 0.84
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:63209501 original size:27 final size:27
Alignment explanation
Indices: 63209482--63209718 Score: 215
Period size: 27 Copynumber: 8.8 Consensus size: 27
63209472 ATTACCAAAG
* * *
63209482 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACATAATTACCATTT
63209509 TACCCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
*
63209536 TACCCCTGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
63209563 TA-CCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
** * * *
63209589 TACCTTCGACTTACAAAATTACCGTTT
1 TACCCCCGATTTACATAATTACCATTT
* * * * *
63209616 TACCCTCGATTTATAGAAGTACCGTTT
1 TACCCCCGATTTACATAATTACCATTT
** * * **
63209643 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCCCGATTTACATAATTACCATTT
** * ***
63209670 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCCCGATTTACATAATTACCATTT
* *
63209697 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACATAATTAC
63209719 TAAAAAACCC
Statistics
Matches: 186, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 25 0.13
27 161 0.87
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCCCGATTTACATAATTACCATTT
Found at i:63209603 original size:80 final size:80
Alignment explanation
Indices: 63209485--63209718 Score: 256
Period size: 80 Copynumber: 2.9 Consensus size: 80
63209475 ACCAAAGTAC
* ** * *
63209485 CCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCATTTTACCC-CTGATTTA
1 CCCCGATTTACAGAATTACCGTTTTACCTTCGATTTACAAAATTACCGTTTTACCCTC-GATTTA
*
63209549 CATAATTACCATTTTA
65 CAAAATTACCATTTTA
* * * *
63209565 CCCCGATTTACATAATTACCATTTTACCTTCGACTTACAAAATTACCGTTTTACCCTCGATTTAT
1 CCCCGATTTACAGAATTACCGTTTTACCTTCGATTTACAAAATTACCGTTTTACCCTCGATTTAC
* * *
63209630 AGAAGTACCGTTTTA
66 AAAATTACCATTTTA
* * * * **
63209645 CCCTTGATTTATAGAATTACTGTTTTACCCTT-GATTTACAGAATTATTGTTTTACCCTCGATTT
1 CCC-CGATTTACAGAATTACCGTTTTA-CCTTCGATTTACAAAATTACCGTTTTACCCTCGATTT
63209709 ACAAAATTAC
64 ACAAAATTAC
63209719 TAAAAAACCC
Statistics
Matches: 127, Mismatches: 24, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
80 69 0.54
81 54 0.43
82 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (80 bp):
CCCCGATTTACAGAATTACCGTTTTACCTTCGATTTACAAAATTACCGTTTTACCCTCGATTTAC
AAAATTACCATTTTA
Found at i:63209618 original size:107 final size:108
Alignment explanation
Indices: 63209482--63209718 Score: 278
Period size: 107 Copynumber: 2.2 Consensus size: 108
63209472 ATTACCAAAG
* * * * * *
63209482 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCATTTTACCCCTGATT
1 TACCCTCGACTTACAAAATTACCGTTTTACCCCCGATTTACAGAAGTACCATTTTACCCCTGATT
* *
63209547 TACATAATTACCATTTTACCC-CGATTTACATAATTACCATTT
66 TACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* * * * *
63209589 TACCTTCGACTTACAAAATTACCGTTTTACCCTCGATTTATAGAAGTACCGTTTTACCCTTGATT
1 TACCCTCGACTTACAAAATTACCGTTTTACCCCCGATTTACAGAAGTACCATTTTACCCCTGATT
* ** * ***
63209654 TATAGAATTACTGTTTTACCCTTGATTTACAGAATTATTGTTT
66 TACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
*
63209697 TACCCTCGATTTACAAAATTAC
1 TACCCTCGACTTACAAAATTAC
63209719 TAAAAAACCC
Statistics
Matches: 107, Mismatches: 22, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
107 71 0.66
108 36 0.34
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (108 bp):
TACCCTCGACTTACAAAATTACCGTTTTACCCCCGATTTACAGAAGTACCATTTTACCCCTGATT
TACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:63209663 original size:54 final size:54
Alignment explanation
Indices: 63209489--63209718 Score: 257
Period size: 54 Copynumber: 4.3 Consensus size: 54
63209479 AAGTACCCCC
* * * * *
63209489 GATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCATTTTACCCCT
1 GATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTT
* * *
63209543 GATTTACATAATTACCATTTTACCC-CGATTTACATAATTACCATTTTA-CCTT
1 GATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTT
* * * *
63209595 CGACTTACAAAATTACCGTTTTACCCTCGATTTATAGAAGTACCGTTTTACCCTT
1 -GATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTT
* * * * *** *
63209650 GATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTATTGTTTTACCCTC
1 GATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTT
63209704 GATTTACAAAATTAC
1 GATTTACAAAATTAC
63209719 TAAAAAACCC
Statistics
Matches: 150, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
52 3 0.02
53 45 0.30
54 98 0.65
55 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
GATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTT
Found at i:63209674 original size:134 final size:135
Alignment explanation
Indices: 63209455--63209718 Score: 323
Period size: 134 Copynumber: 2.0 Consensus size: 135
63209445 ATTACTGAAA
** * *
63209455 TACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACAGAATTATCGTTTTACCCCCGATT
1 TACCTTCGACTTACAAAATTACCAAAGTACCCCCGATTTACAGAAGTACCGTTTTACCCCCGATT
* * *
63209520 TACATAATTACCATTTTACCCCTGATTTACATAATTACCATTTTACCC-CGATTTACATAATTAC
66 TACAGAATTACCATTTTACCCCTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC
63209584 CATTT
131 CATTT
**** * * **
63209589 TACCTTCGACTTACAAAATTACCGTTTTACCCTCGATTTATAGAAGTACCGTTTTACCCTTGATT
1 TACCTTCGACTTACAAAATTACCAAAGTACCCCCGATTTACAGAAGTACCGTTTTACCCCCGATT
* ** * ***
63209654 TATAGAATTACTGTTTTACCCTTGATTTACAGAATTATTGTTTTACCCTCGATTTACAAAATTAC
66 TACAGAATTACCATTTTACCCCTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC
63209719 TAAAAAACCC
Statistics
Matches: 107, Mismatches: 22, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
134 92 0.86
135 15 0.14
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (135 bp):
TACCTTCGACTTACAAAATTACCAAAGTACCCCCGATTTACAGAAGTACCGTTTTACCCCCGATT
TACAGAATTACCATTTTACCCCTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC
CATTT
Found at i:63209747 original size:26 final size:26
Alignment explanation
Indices: 63209711--63209889 Score: 101
Period size: 27 Copynumber: 6.7 Consensus size: 26
63209701 CTCGATTTAC
63209711 AAAATTACTAAAAAACCCTAGTCTGT
1 AAAATTACTAAAAAACCCTAGTCTGT
* * * *
63209737 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAAAACCC-TAGTCTGT
* * *
63209764 AAAATTAC-AGAAATACCCTCAATTTGT
1 AAAATTACTA-AAAAACCCT-AGTCTGT
* *
63209791 AAAATTACCAAAATACCCCTAG-CTTGT
1 AAAATTACTAAAA-AACCCTAGTC-TGT
* * *
63209818 AAAATTACTAAAATACCACTGGTTTGT
1 AAAATTACTAAAAAACC-CTAGTCTGT
* ** * * *
63209845 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTAAAAAACCCT-AGTCTGT
* *
63209872 AAAATTACCAAAATACCC
1 AAAATTACTAAAAAACCC
63209890 CTGATTTACA
Statistics
Matches: 121, Mismatches: 23, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
26 22 0.18
27 94 0.78
28 5 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (26 bp):
AAAATTACTAAAAAACCCTAGTCTGT
Found at i:63209777 original size:27 final size:27
Alignment explanation
Indices: 63209734--63209982 Score: 166
Period size: 27 Copynumber: 9.1 Consensus size: 27
63209724 AACCCTAGTC
*
63209734 TGTAAAATTGCTA-AAATACCCTTGGTT
1 TGTAAAATTAC-AGAAATACCCTTGGTT
***
63209761 TGTAAAATTACAGAAATACCCTCAATT
1 TGTAAAATTACAGAAATACCCTTGGTT
* * *
63209788 TGTAAAATTACCA-AAATACCCCTAGCT
1 TGTAAAATTA-CAGAAATACCCTTGGTT
63209815 TGTAAAATTACTA-AAATACCAC-TGGTT
1 TGTAAAATTAC-AGAAATACC-CTTGGTT
* * ***
63209842 TGTGAAATTACCGAAATACCCTCAATT
1 TGTAAAATTACAGAAATACCCTTGGTT
* *
63209869 TGTAAAATTACCA-AAATACCCCTGATT
1 TGTAAAATTA-CAGAAATACCCTTGGTT
** * * *
63209896 TACAAAGTTATAGAAATACCCTTGACTT
1 TGTAAAATTACAGAAATACCCTTG-GTT
* * *
63209924 TCTAAAAATTATAGAAATACCATTGGTT
1 TGT-AAAATTACAGAAATACCCTTGGTT
** * *
63209952 TACAAAATTACTGAAATACCTTTGGTT
1 TGTAAAATTACAGAAATACCCTTGGTT
63209979 TGTA
1 TGTA
63209983 GATTTACCAA
Statistics
Matches: 174, Mismatches: 38, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
26 4 0.02
27 141 0.81
28 10 0.06
29 19 0.11
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACAGAAATACCCTTGGTT
Done.