Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 207 of 410
Found at i:63209808 original size:54 final size:52
Alignment explanation
Indices: 63209711--63209889 Score: 178
Period size: 54 Copynumber: 3.3 Consensus size: 52
63209701 CTCGATTTAC
* * * * * *
63209711 AAAATTACTAAAAAACCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTAC-AAAATACCCTAATTTGTAAAATTACCAAAATACCCTTAGTTTGT
* *
63209764 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACA-AAATACCCT-AATTTGTAAAATTACCAAAATACCCTTAGTTTGT
** * * * *
63209818 AAAATTACTAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGT
1 AAAATTAC-AAAATACC-CTAATTTGTAAAATTACCAAAATACCCTTAGTTTGT
63209872 AAAATTACCAAAATACCC
1 AAAATTA-CAAAATACCC
63209890 CTGATTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 17 0.16
54 83 0.79
55 4 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (52 bp):
AAAATTACAAAATACCCTAATTTGTAAAATTACCAAAATACCCTTAGTTTGT
Found at i:63209913 original size:81 final size:81
Alignment explanation
Indices: 63209697--63209944 Score: 283
Period size: 81 Copynumber: 3.0 Consensus size: 81
63209687 ATTATTGTTT
* ** * * *
63209697 TACCCTCGATTTACAAAATTACTAAAA-AACCCTAG-TCTGTAAAATTGCTAAAATACCCTTGGT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGAT-TGTAAAATTACTAAAATACCCTTGGT
63209760 TTGTAAAATTACAGAAA
65 TTGTAAAATTACAGAAA
*
63209777 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACTAAAATACCAC-TGGT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACTAAAATACC-CTTGGT
* *
63209841 TTGTGAAATTACCGAAA
65 TTGTAAAATTACAGAAA
63209858 TACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-TAGAAATACCCTTG
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACTA-AAATACCCTTG
* * *
63209920 ACTTTCTAAAAATTATAGAAA
63 -GTTTGT-AAAATTACAGAAA
63209941 TACC
1 TACC
63209945 ATTGGTTTAC
Statistics
Matches: 145, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
79 2 0.01
80 32 0.22
81 91 0.63
82 6 0.04
83 14 0.10
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACTAAAATACCCTTGGTT
TGTAAAATTACAGAAA
Found at i:63210063 original size:27 final size:27
Alignment explanation
Indices: 63210033--63210124 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
63210023 ACCCCTATTA
*
63210033 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
63210060 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
63210087 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
63210114 GGTAAAATGAC
1 GGTAAAATGAC
63210125 GAATATGCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:63211313 original size:25 final size:25
Alignment explanation
Indices: 63211284--63211331 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63211274 TTATAACATG
* * *
63211284 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63211309 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63211332 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63211398 original size:20 final size:20
Alignment explanation
Indices: 63211375--63211429 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
63211365 TAAACATGGT
63211375 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
63211395 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
63211415 ACGTATGATATGCAC
1 ATGTATGATATGCAC
63211430 TTGATGTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:63211540 original size:24 final size:23
Alignment explanation
Indices: 63211484--63211650 Score: 210
Period size: 24 Copynumber: 7.0 Consensus size: 23
63211474 GAGGAAGTGA
63211484 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
63211507 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
63211530 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
63211554 CAAAAAGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
63211578 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
63211601 AAAAAGGGCTTTTGCCCTAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
63211626 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63211650 A
1 A
63211651 TGATAAAGCA
Statistics
Matches: 126, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
23 42 0.33
24 74 0.59
25 10 0.08
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:63211553 original size:47 final size:47
Alignment explanation
Indices: 63211484--63211650 Score: 214
Period size: 47 Copynumber: 3.5 Consensus size: 47
63211474 GAGGAAGTGA
*
63211484 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
*
63211530 CAAAAGGGCTTATGCCCCAGTTATCAAAAA-GGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT-AAAAAGGGCTTATGCCCCAGTTAT
* * *
63211578 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
63211626 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
63211651 TGATAAAGCA
Statistics
Matches: 106, Mismatches: 8, Indels: 10
0.85 0.06 0.08
Matches are distributed among these distances:
46 5 0.05
47 59 0.56
48 27 0.25
49 15 0.14
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:63211606 original size:71 final size:71
Alignment explanation
Indices: 63211483--63211649 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 71
63211473 GGAGGAAGTG
* *
63211483 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAA-GGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCC
63211548 AGTTATC
65 AGTTATC
* *
63211555 AAAAAGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCTA
1 AAAAAGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
63211620 GTTATT
66 GTTATC
*
63211626 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAA-AGGCTTACGCC-CCAGTTAT
63211650 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 70 0.80
72 17 0.20
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (71 bp):
AAAAAGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:63213449 original size:29 final size:29
Alignment explanation
Indices: 63213416--63213546 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
63213406 GTGACGAGAT
63213416 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63213445 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
63213474 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
63213503 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
63213532 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
63213547 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:63223139 original size:31 final size:31
Alignment explanation
Indices: 63223104--63223167 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
63223094 TGTTTACAGT
*
63223104 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
63223135 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63223166 AA
1 AA
63223168 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63227981 original size:55 final size:54
Alignment explanation
Indices: 63227861--63227988 Score: 148
Period size: 55 Copynumber: 2.4 Consensus size: 54
63227851 ACCAAGTAAT
* * * * * *
63227861 ACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGCAAGGAAATCATGTAAG
1 ACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAAACCATGAAAG
* * * **
63227915 ACCATGTCAAGGCATGGCATTGATAAACTACTATACGGCAAAGATCCCATGAAAG
1 ACCATGCCAAGGCATGGCATTGAT-AACTACTACAAGGCAAAGAAACCATGAAAG
63227970 ACCATGCCAAGGCATGGCA
1 ACCATGCCAAGGCATGGCA
63227989 ATGGTGAGTT
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
54 22 0.36
55 39 0.64
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
ACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAAACCATGAAAG
Found at i:63228857 original size:71 final size:71
Alignment explanation
Indices: 63228773--63228910 Score: 267
Period size: 71 Copynumber: 1.9 Consensus size: 71
63228763 ATATGTATAG
63228773 ATTTTCATTATAAATAAACAAAAACATTATCTGATATCTTTATAATGAGATAATTGATTTTTAGT
1 ATTTTCATTATAAATAAACAAAAACATTATCTGATATCTTTATAATGAGATAATTGATTTTTAGT
63228838 GAGTCT
66 GAGTCT
*
63228844 ATTTTCATTATAAATAAACAAAAACATTATTTGATATCTTTATAATGAGATAATTGATTTTTAGT
1 ATTTTCATTATAAATAAACAAAAACATTATCTGATATCTTTATAATGAGATAATTGATTTTTAGT
63228909 GA
66 GA
63228911 AGAGAGGTTA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (71 bp):
ATTTTCATTATAAATAAACAAAAACATTATCTGATATCTTTATAATGAGATAATTGATTTTTAGT
GAGTCT
Found at i:63237618 original size:21 final size:21
Alignment explanation
Indices: 63237594--63237637 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
63237584 AAAATCACTT
*
63237594 AACAA-AATTTATAAATCTATC
1 AACAAGAATTCAT-AATCTATC
*
63237615 AACAAGCATTCATAATCTATC
1 AACAAGAATTCATAATCTATC
63237636 AA
1 AA
63237638 GAAACTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.50, C:0.18, G:0.02, T:0.30
Consensus pattern (21 bp):
AACAAGAATTCATAATCTATC
Found at i:63237652 original size:21 final size:21
Alignment explanation
Indices: 63237606--63237649 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
63237596 CAAAATTTAT
*
63237606 AAATCTATCAACAAGCATTCA
1 AAATCTATCAACAAACATTCA
* *
63237627 TAATCTATCAAGAAAC-TTCA
1 AAATCTATCAACAAACATTCA
63237647 AAA
1 AAA
63237650 ATCATACATA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.50, C:0.20, G:0.05, T:0.25
Consensus pattern (21 bp):
AAATCTATCAACAAACATTCA
Found at i:63240462 original size:40 final size:40
Alignment explanation
Indices: 63240403--63240544 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
63240393 AAATTGAATG
* * *
63240403 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
63240443 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
63240483 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
63240523 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
63240545 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:63240568 original size:40 final size:40
Alignment explanation
Indices: 63240441--63240570 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
63240431 ATGCTGGAAA
* * *
63240441 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
63240481 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
63240521 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63240561 TTATATCCGG
1 TTATATCCGG
63240571 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63248436 original size:40 final size:40
Alignment explanation
Indices: 63248370--63248520 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
63248360 AAATTGAATG
* * *
63248370 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63248409 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
63248449 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
63248489 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
63248521 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63248534 original size:40 final size:40
Alignment explanation
Indices: 63248407--63248536 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
63248397 ATGCTGGAAA
* * *
63248407 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
63248447 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
63248487 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63248527 TTATATCCGG
1 TTATATCCGG
63248537 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63250624 original size:40 final size:40
Alignment explanation
Indices: 63250579--63250745 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
63250569 CGGAATATAA
63250579 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63250619 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
63250659 CCGGATATAGCCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63250699 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63250738 CCGGATAT
1 CCGGATAT
63250746 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63252004 original size:57 final size:57
Alignment explanation
Indices: 63251940--63252054 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 57
63251930 CCCCCTTTTC
63251940 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAACAAATTTTTTCTTTTCTTT
*** ** *
63251997 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTCTTTTTTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTCTTTTCTTT
63252054 C
1 C
63252055 TTTTTCATAT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
57 46 0.92
58 4 0.08
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (57 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTCTTTTCTTT
Found at i:63259301 original size:20 final size:18
Alignment explanation
Indices: 63259219--63259328 Score: 57
Period size: 20 Copynumber: 5.9 Consensus size: 18
63259209 TTCTAAAATT
* *
63259219 AATATTATTTTAATAGTTT
1 AATATTAATTTAATA-TTA
63259238 AATATTAAATTTAAT-TT-
1 AATATT-AATTTAATATTA
* * *
63259255 AATACATATTTTAATAGTA
1 AATA-TTAATTTAATATTA
**
63259274 TTTTATTAATTTAATATTA
1 -AATATTAATTTAATATTA
*
63259293 AAGTGATT-ATCTTAATATTT
1 AA-T-ATTAAT-TTAATATTA
63259313 AAT-TTAATTTAATATT
1 AATATTAATTTAATATT
63259329 TATCTTGTAG
Statistics
Matches: 70, Mismatches: 12, Indels: 20
0.69 0.12 0.20
Matches are distributed among these distances:
17 21 0.30
18 6 0.09
19 21 0.30
20 22 0.31
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (18 bp):
AATATTAATTTAATATTA
Found at i:63259385 original size:12 final size:12
Alignment explanation
Indices: 63259368--63259392 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63259358 AATAAGATTC
63259368 AATATTATATTT
1 AATATTATATTT
63259380 AATATTATATTT
1 AATATTATATTT
63259392 A
1 A
63259393 TCTTAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AATATTATATTT
Found at i:63259420 original size:20 final size:21
Alignment explanation
Indices: 63259380--63259420 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63259370 TATTATATTT
* *
63259380 AATATTATATTTATCTTAATA
1 AATATTACATTAATCTTAATA
63259401 AATATTACATTAAT-TTAATA
1 AATATTACATTAATCTTAATA
63259421 TTAAAGTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (21 bp):
AATATTACATTAATCTTAATA
Found at i:63265285 original size:23 final size:22
Alignment explanation
Indices: 63265242--63265297 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
63265232 AAAGGATATC
* *
63265242 TACAAATAAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
63265263 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
63265286 TACATATCATAT
1 TACAAATCATAT
63265298 ATAAGATTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 16 0.53
23 11 0.37
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:63269489 original size:48 final size:48
Alignment explanation
Indices: 63269418--63269700 Score: 270
Period size: 48 Copynumber: 5.9 Consensus size: 48
63269408 AGGGGATACA
* * *
63269418 TTGATATGGCTACGGGCCATGATATTAGTACTTCGGGTGCGAGTTACT
1 TTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTACT
* * * *
63269466 TTGATTTGGCTTTGGGCCATGATATTGGCACTTCGAGTGCGAGCTT-CA
1 TTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAG-TTACT
* * * *
63269514 TTGATTTGGCTACGGGCCATGATATTAGCATTTCGAGTTCGAGTTACT
1 TTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTACT
** *
63269562 TTGATTTGGCTTCAAGCCATGATATTGGCACCTT-GGGTGCGAGCTTCAC-
1 TTGATTTGGCTTCGGGCCATGATATTAGCA-CTTCGGGTGCGAG-TT-ACT
* * * *
63269611 -AGATTTGGCTACGGGCCATGATATTAGCACTTCGGGTGCAAGATA-T
1 TTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTACT
* ** * * *
63269657 ATTGAGTTGGCTTTAGGCCATGATATTGGCACTTAGTGTGCGAG
1 -TTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAG
63269701 ACTCCTCAGT
Statistics
Matches: 190, Mismatches: 36, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
46 1 0.01
47 6 0.03
48 175 0.92
49 6 0.03
50 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.28, T:0.34
Consensus pattern (48 bp):
TTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTACT
Found at i:63269581 original size:96 final size:95
Alignment explanation
Indices: 63269416--63269700 Score: 392
Period size: 96 Copynumber: 3.0 Consensus size: 95
63269406 TTAGGGGATA
* * *
63269416 CATTGATATGGCTACGGGCCATGATATTAGTACTTCGGGTGCGAGTTACTTTGATTTGGCTTTGG
1 CATTGATTTGGCTACGGGCCATGATATTAGCACTTCGGGTGCGAGTTACTTTGATTTGGCTTTAG
63269481 GCCATGATATTGGCACTTCGAGTGCGAGCTT
66 GCCATGATATTGGCACTT-GAGTGCGAGCTT
* * * * *
63269512 CATTGATTTGGCTACGGGCCATGATATTAGCATTTCGAGTTCGAGTTACTTTGATTTGGCTTCAA
1 CATTGATTTGGCTACGGGCCATGATATTAGCACTTCGGGTGCGAGTTACTTTGATTTGGCTTTAG
*
63269577 GCCATGATATTGGCACCTTGGGTGCGAGCTT
66 GCCATGATATTGGCA-CTTGAGTGCGAGCTT
** * * *
63269608 CACAGATTTGGCTACGGGCCATGATATTAGCACTTCGGGTGCAAGATA-TATTGAGTTGGCTTTA
1 CATTGATTTGGCTACGGGCCATGATATTAGCACTTCGGGTGCGAGTTACT-TTGATTTGGCTTTA
*
63269672 GGCCATGATATTGGCACTTAGTGTGCGAG
65 GGCCATGATATTGGCACTT-GAGTGCGAG
63269701 ACTCCTCAGT
Statistics
Matches: 166, Mismatches: 20, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
95 4 0.02
96 159 0.96
97 3 0.02
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (95 bp):
CATTGATTTGGCTACGGGCCATGATATTAGCACTTCGGGTGCGAGTTACTTTGATTTGGCTTTAG
GCCATGATATTGGCACTTGAGTGCGAGCTT
Found at i:63270414 original size:8 final size:8
Alignment explanation
Indices: 63270401--63270426 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
63270391 CTTGATAAGC
63270401 TTGTTGTT
1 TTGTTGTT
63270409 TTGTTGTT
1 TTGTTGTT
63270417 TTGTTGTT
1 TTGTTGTT
63270425 TT
1 TT
63270427 AGTATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (8 bp):
TTGTTGTT
Found at i:63289530 original size:14 final size:14
Alignment explanation
Indices: 63289511--63289540 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63289501 ATCTTTTACT
63289511 TAGAAAAACATGCA
1 TAGAAAAACATGCA
*
63289525 TAGAAAACCATGCA
1 TAGAAAAACATGCA
63289539 TA
1 TA
63289541 CTACCATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.17, G:0.13, T:0.17
Consensus pattern (14 bp):
TAGAAAAACATGCA
Found at i:63292519 original size:46 final size:46
Alignment explanation
Indices: 63292443--63292755 Score: 421
Period size: 46 Copynumber: 6.8 Consensus size: 46
63292433 TGATGTCATA
* * * * *
63292443 GTATCTTTCAACTATGCTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCATGTTGCCATG
* *** * *
63292489 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCACGTTCCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCATGTTGCCATG
*
63292536 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
* *
63292582 GTATCTTTCAACCATGGTCTTATTCAATTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
* * *
63292628 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCACG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
* *
63292674 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
*
63292720 GTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCA
63292756 GGGAGCACAC
Statistics
Matches: 243, Mismatches: 22, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
46 206 0.85
47 37 0.15
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATG
Found at i:63295506 original size:48 final size:48
Alignment explanation
Indices: 63295454--63295730 Score: 262
Period size: 48 Copynumber: 5.8 Consensus size: 48
63295444 GGGTCAATGA
* * * * *
63295454 GATCCCTTATAAGACCATATTTGGGATATGGCATCGGCATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* * * *
63295502 GATCCCATGTAAGACGATGTCTGGGACATAGCATTGGCATCGTTATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* *
63295550 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* * * * *
63295598 GAACATCATGTAAGACCATAGCTGGG-CTAT--CA---GCTTCAATAAGTGT
1 GATC-CCATGTAAGACCATATCTGGGAC-ATGGCATTGGCATCGAT-A-TGT
* * *
63295644 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGTCATCGATAAGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* * *
63295692 GGTCCCATATAAGACCATAT-TCGGGATATGGCATTGGCA
1 GATCCCATGTAAGACCATATCT-GGGACATGGCATTGGCA
63295731 CCCTATTATG
Statistics
Matches: 185, Mismatches: 33, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
44 6 0.03
45 21 0.11
46 6 0.03
47 5 0.03
48 121 0.65
49 21 0.11
50 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
Found at i:63297436 original size:53 final size:54
Alignment explanation
Indices: 63297351--63297557 Score: 193
Period size: 53 Copynumber: 3.8 Consensus size: 54
63297341 TTCATTTTTA
* * *
63297351 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
63297404 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTATCG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * * *
63297458 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
63297513 AACTCACCAATT-CCATCCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACC-ATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63297558 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 33, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 45 0.38
54 32 0.27
55 41 0.35
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (54 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:63298052 original size:23 final size:23
Alignment explanation
Indices: 63298026--63298071 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
63298016 GCCTACGGAA
63298026 ACATCAAATTCCCACTCTAACAT
1 ACATCAAATTCCCACTCTAACAT
63298049 ACATCAAATTCCCACTCTAACAT
1 ACATCAAATTCCCACTCTAACAT
63298072 GTACTTATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.26
Consensus pattern (23 bp):
ACATCAAATTCCCACTCTAACAT
Found at i:63302003 original size:11 final size:11
Alignment explanation
Indices: 63301987--63302018 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
63301977 TGAGGGAGTA
63301987 GCTTGATTCAT
1 GCTTGATTCAT
63301998 GCTTGATTCAT
1 GCTTGATTCAT
63302009 GCTTGATTCA
1 GCTTGATTCA
63302019 AGGGATAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (11 bp):
GCTTGATTCAT
Found at i:63302500 original size:22 final size:22
Alignment explanation
Indices: 63302455--63302504 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
63302445 TACCATCAAA
63302455 CAAAAAAATTTATAACAAAAACT
1 CAAAAAAATTTAT-ACAAAAACT
**
63302478 CTAAAAAAATTTAT-CAACCACT
1 C-AAAAAAATTTATACAAAAACT
63302500 CAAAA
1 CAAAA
63302505 TTTACATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 4 0.17
22 7 0.29
23 1 0.04
24 12 0.50
ACGTcount: A:0.60, C:0.18, G:0.00, T:0.22
Consensus pattern (22 bp):
CAAAAAAATTTATACAAAAACT
Found at i:63305785 original size:23 final size:23
Alignment explanation
Indices: 63305735--63305856 Score: 99
Period size: 23 Copynumber: 5.3 Consensus size: 23
63305725 ACCGATATAT
* *
63305735 CAGCTCATAAGAGCTTACTGTTT
1 CAGCTCATATGAGCTTACTGTTC
* *
63305758 TAGCTTAT-TGAAGCTTACTGTTC
1 CAGCTCATATG-AGCTTACTGTTC
**
63305781 CAGCTCATATGAGCTTACTAAT-
1 CAGCTCATATGAGCTTACTGTTC
* *
63305803 CAGCTCGATA-GAGCTTACAGTTT
1 CAGCTC-ATATGAGCTTACTGTTC
*
63305826 CAGCTCAT-TAGAGCTTACTGTTAT
1 CAGCTCATAT-GAGCTTACTGTT-C
63305850 CAGCTCA
1 CAGCTCA
63305857 GGGGGAGCTT
Statistics
Matches: 80, Mismatches: 12, Indels: 13
0.76 0.11 0.12
Matches are distributed among these distances:
22 18 0.22
23 52 0.65
24 10 0.12
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (23 bp):
CAGCTCATATGAGCTTACTGTTC
Found at i:63309327 original size:15 final size:15
Alignment explanation
Indices: 63309307--63309337 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63309297 ACGAGTACTA
*
63309307 TAGTATTTACTTCCT
1 TAGTATTTACTACCT
63309322 TAGTATTTACTACCT
1 TAGTATTTACTACCT
63309337 T
1 T
63309338 TGATTAAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.19, G:0.06, T:0.52
Consensus pattern (15 bp):
TAGTATTTACTACCT
Found at i:63310676 original size:13 final size:13
Alignment explanation
Indices: 63310658--63310682 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63310648 CGTGTGGGTG
63310658 CACACGGCCATGT
1 CACACGGCCATGT
63310671 CACACGGCCATG
1 CACACGGCCATG
63310683 CCTTACTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.40, G:0.24, T:0.12
Consensus pattern (13 bp):
CACACGGCCATGT
Found at i:63318011 original size:29 final size:29
Alignment explanation
Indices: 63317977--63318051 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
63317967 TACTCGATTT
*
63317977 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
63318006 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
63318035 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
63318052 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:63318068 original size:29 final size:29
Alignment explanation
Indices: 63318035--63318108 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
63318025 CCTTCGAGCT
63318035 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
63318064 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63318093 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63318109 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63327249 original size:28 final size:28
Alignment explanation
Indices: 63327209--63327307 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
63327199 GCAATAAGCC
*
63327209 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
63327237 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
63327265 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
63327294 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63327308 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:63330650 original size:39 final size:39
Alignment explanation
Indices: 63330569--63330731 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
63330559 TATGGTAACC
* *
63330569 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
63330609 CGCACTATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
63330648 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
63330687 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
63330726 CGCACA
1 CGCACA
63330732 TTCATACACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:63335550 original size:46 final size:46
Alignment explanation
Indices: 63335434--63335551 Score: 154
Period size: 46 Copynumber: 2.6 Consensus size: 46
63335424 CTATATCCTG
*
63335434 GACATGGTCTTACACTAGCTTA-A-CTC-ATAGCCGATGCATGTCCCA
1 GACAT-GTCTTACACTAGCTTACATCTCGA-GGCCGATGCATGTCCCA
*
63335479 GACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCA
1 GACATGTCTTACACTAGCTTACATCTCGAGGCCGATGCATGTCCCA
*
63335525 GACATGTCTTATACTAGCTCT-CATCTC
1 GACATGTCTTACACTAGCT-TACATCTC
63335552 ACTATCGATG
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
44 15 0.23
45 6 0.09
46 42 0.65
47 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
GACATGTCTTACACTAGCTTACATCTCGAGGCCGATGCATGTCCCA
Found at i:63339786 original size:50 final size:50
Alignment explanation
Indices: 63339714--63339948 Score: 249
Period size: 50 Copynumber: 4.7 Consensus size: 50
63339704 AAGATCGTTG
63339714 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGT
* * * * * * *
63339764 TAGGTCGCATGTGCAGTACTAAGTGCAGGCTACCATGCGTACCCAACA-ACT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAA-ATAGT
* * * * * *
63339815 TCGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGT
* * *** *
63339865 TAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCTGGAT-TT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGT
* *
63339914 TTGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
63339949 TGCATACCAG
Statistics
Matches: 152, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
49 34 0.22
50 79 0.52
51 38 0.25
52 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGT
Found at i:63339939 original size:49 final size:50
Alignment explanation
Indices: 63339667--63339948 Score: 228
Period size: 50 Copynumber: 5.6 Consensus size: 50
63339657 ATTGTGAGAA
* * ** * * *
63339667 CACATGTGTAGTACTATGTGTAGGCTACTATTTGTTTAAGATCGTTGTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGT-TAGGT
* * * *
63339719 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
* * * * * * *** * *
63339769 CGCATGTGCAGTACTAAGTGCAGGCTACCATGCGTACCCA-ACAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGA-TGGTTAGGT
**
63339820 CATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
** * * * *
63339870 CATGTGTGTAGTACTAAGTGCAGGCTACTACGTGT-GCTGGAT-TTTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATGGTTAGGT
63339919 CACATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
63339949 TGCATACCAG
Statistics
Matches: 186, Mismatches: 40, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
49 34 0.18
50 80 0.43
51 39 0.21
52 33 0.18
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
Found at i:63343665 original size:21 final size:21
Alignment explanation
Indices: 63343608--63343666 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
63343598 CATGGTCTAC
* * *
63343608 CCACACGACCGTGTACCTCAG
1 CCACACGATCGTGTATCTCAA
*
63343629 CCACACGGTCGTGTATCTCAA
1 CCACACGATCGTGTATCTCAA
*
63343650 CCACATGATCGTGTATC
1 CCACACGATCGTGTATC
63343667 CCTGTCACAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.24, C:0.36, G:0.19, T:0.22
Consensus pattern (21 bp):
CCACACGATCGTGTATCTCAA
Found at i:63345038 original size:2 final size:2
Alignment explanation
Indices: 63345026--63345061 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
63345016 ACTTTAATAC
*
63345026 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63345062 CCCTTTCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:63347875 original size:2 final size:2
Alignment explanation
Indices: 63347868--63347892 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
63347858 ATTTTCATTC
63347868 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
63347893 AGCCGTAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:63348264 original size:25 final size:25
Alignment explanation
Indices: 63348236--63348290 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
63348226 GGTTTAAAGA
63348236 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
63348261 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
63348286 ATTCG
1 ATTCG
63348291 TTATTACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:63348519 original size:40 final size:40
Alignment explanation
Indices: 63348454--63348587 Score: 198
Period size: 40 Copynumber: 3.4 Consensus size: 40
63348444 GATTACACAT
* * * *
63348454 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTTA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
**
63348494 CACCAGCACGAATGCTCTTCGGGACTTAGCCTAGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
63348534 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
63348574 CACCTA-CACGAATG
1 CACC-AGCACGAATG
63348588 TAACACCCCG
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
40 84 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
Found at i:63350064 original size:2 final size:2
Alignment explanation
Indices: 63350057--63350085 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
63350047 TTGATAGAAA
63350057 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63350086 GTGGGTTCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:63350155 original size:29 final size:29
Alignment explanation
Indices: 63350116--63350195 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
63350106 CTTAATAATC
*
63350116 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
63350146 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
63350175 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
63350196 TCTCTCAACT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:63353636 original size:2 final size:2
Alignment explanation
Indices: 63353624--63353659 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
63353614 ACTTTAATAC
*
63353624 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63353660 CCCTTTCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:63358931 original size:18 final size:18
Alignment explanation
Indices: 63358908--63358947 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
63358898 ATTTGGATTC
*
63358908 TTTTATATTTAAAATGAT
1 TTTTATATTTAAAATAAT
* *
63358926 TTTTATTTTTTAAATAAT
1 TTTTATATTTAAAATAAT
63358944 TTTT
1 TTTT
63358948 TCATAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTTATATTTAAAATAAT
Found at i:63362064 original size:29 final size:29
Alignment explanation
Indices: 63362031--63362191 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
63362021 GTGACGAGAT
63362031 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
63362060 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
63362089 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
63362118 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
63362147 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
63362176 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63362192 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:63363779 original size:27 final size:27
Alignment explanation
Indices: 63363741--63363794 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
63363731 ACTCTGCTTT
63363741 GAACTTGATTTTATGAGATGGAAGGTC
1 GAACTTGATTTTATGAGATGGAAGGTC
63363768 GAACTTGATTTTATGAGATGGAAGGTC
1 GAACTTGATTTTATGAGATGGAAGGTC
63363795 ACATAAGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.33
Consensus pattern (27 bp):
GAACTTGATTTTATGAGATGGAAGGTC
Found at i:63366761 original size:53 final size:54
Alignment explanation
Indices: 63366672--63366887 Score: 249
Period size: 55 Copynumber: 4.0 Consensus size: 54
63366662 TATGTGGTAT
* * *
63366672 CCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * *
63366726 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTG
* * * * * *
63366779 CCTTATAGTAACTTATCAATGCGATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* *
63366834 CCTTA-GAAACCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63366888 AAACCCTAAT
Statistics
Matches: 134, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.01
53 47 0.35
54 14 0.10
55 69 0.51
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:63371599 original size:31 final size:31
Alignment explanation
Indices: 63371556--63371619 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63371546 TTGGAGTTAG
* * * *
63371556 AAGTTAGAGAATTTTTGCAATCCAAGTTGTT
1 AAGTCAGAGAATTTGTGCAACCCAAGTAGTT
63371587 AAGTCAGAGAATTTGTGCAACCCAAGTAGTT
1 AAGTCAGAGAATTTGTGCAACCCAAGTAGTT
63371618 AA
1 AA
63371620 TTGAAGAAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (31 bp):
AAGTCAGAGAATTTGTGCAACCCAAGTAGTT
Found at i:63377874 original size:42 final size:43
Alignment explanation
Indices: 63377776--63377928 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 43
63377766 TGCCAACATA
*
63377776 CCAGACATGGTCTTACATGTAATCAAATATCAATGCCACTGTC
1 CCAGACATGGTCTTACATGAAATCAAATATCAATGCCACTGTC
* *
63377819 CCAGACA-GCGTCTTACATGAAATCAAATA-CGATGCTGA-TGTC
1 CCAGACATG-GTCTTACATGAAATCAAATATCAATGC-CACTGTC
* * * *
63377861 CCCGACATGGTCTTACACGTAAATCATAA-ATCGATGCCAAC-ATC
1 CCAGACATGGTCTTACATG-AAATCA-AATATCAATGCC-ACTGTC
* *
63377905 CCAGACGTCGTCTTA-ATGAAATCA
1 CCAGACATGGTCTTACATGAAATCA
63377929 CACATCAAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 17
0.76 0.09 0.14
Matches are distributed among these distances:
42 31 0.34
43 37 0.41
44 23 0.25
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
CCAGACATGGTCTTACATGAAATCAAATATCAATGCCACTGTC
Found at i:63388489 original size:43 final size:42
Alignment explanation
Indices: 63388442--63388563 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 42
63388432 CCAACATACG
*
63388442 AGACATGGTCTTACATGTAATCAAATATCAATGCCACTGTCCC
1 AGACATGGTCTTACATGTAATCAAATATCGATGCCA-TGTCCC
* *
63388485 AGACA-GCGTCTTACATGAAATCAAATA-CGATGCTGATGTCCC
1 AGACATG-GTCTTACATGTAATCAAATATCGATGC-CATGTCCC
* *
63388527 CGACATGGTCTTACACGTAAATCATAA-ATCGATGCCA
1 AGACATGGTCTTACATGT-AATCA-AATATCGATGCCA
63388564 ACATGCCAGA
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
42 25 0.38
43 33 0.50
44 8 0.12
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
AGACATGGTCTTACATGTAATCAAATATCGATGCCATGTCCC
Found at i:63388538 original size:42 final size:43
Alignment explanation
Indices: 63388442--63388592 Score: 127
Period size: 43 Copynumber: 3.5 Consensus size: 43
63388432 CCAACATACG
*
63388442 AGACATGGTCTTACATGTAATCAAATATCAATGCCACTGTCCC
1 AGACATGGTCTTACATGAAATCAAATATCAATGCCACTGTCCC
* *
63388485 AGACA-GCGTCTTACATGAAATCAAATA-CGATGCTGA-TGTCCC
1 AGACATG-GTCTTACATGAAATCAAATATCAATGC-CACTGTCCC
* * *
63388527 CGACATGGTCTTACACGTAAATCATAA-ATCGATGCCAACATG--CC
1 AGACATGGTCTTACATG-AAATCA-AATATCAATGCC-AC-TGTCCC
* *
63388571 AGACGTCGTCTTA-ATGAAATCA
1 AGACATGGTCTTACATGAAATCA
63388593 CACATCAAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 19
0.75 0.08 0.16
Matches are distributed among these distances:
42 31 0.35
43 35 0.39
44 21 0.24
46 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
AGACATGGTCTTACATGAAATCAAATATCAATGCCACTGTCCC
Found at i:63389995 original size:21 final size:21
Alignment explanation
Indices: 63389970--63390021 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
63389960 ATTCAGTTCA
63389970 AAATACTTTTAAGAATATCTC
1 AAATACTTTTAAGAATATCTC
63389991 AAATACTTTTAAGAATATCTC
1 AAATACTTTTAAGAATATCTC
*
63390012 TAATACTTTT
1 AAATACTTTT
63390022 GTTCCTGAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.42
Consensus pattern (21 bp):
AAATACTTTTAAGAATATCTC
Found at i:63394122 original size:46 final size:46
Alignment explanation
Indices: 63394013--63394124 Score: 170
Period size: 46 Copynumber: 2.4 Consensus size: 46
63394003 GTATCTATAC
* *
63394013 CATGGCCTATAGCCAAATCAAGGTAACTTATCCGAAGAACAATTAT
1 CATGGCCTAAAGCCAAATCAAGGTAACTTATCCAAAGAACAATTAT
** *
63394059 CATGGCCCGAAGCCAAATGAAGGTAACTTATCCAAAGAACAATTAT
1 CATGGCCTAAAGCCAAATCAAGGTAACTTATCCAAAGAACAATTAT
*
63394105 CATGGCCTAAAGACAAATCA
1 CATGGCCTAAAGCCAAATCA
63394125 TCCAATATGC
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (46 bp):
CATGGCCTAAAGCCAAATCAAGGTAACTTATCCAAAGAACAATTAT
Found at i:63402601 original size:45 final size:45
Alignment explanation
Indices: 63402536--63402621 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
63402526 CCAAAACATG
* *
63402536 TGTCACATATATCACAAACTCGGACCACAACTTAATGAGTTCGGA
1 TGTCACATATATCACAAACTCAGACCACAACTCAATGAGTTCGGA
* ** *
63402581 TGTCACATCTATCATGAACTCAGACCATAACTCAATGAGTT
1 TGTCACATATATCACAAACTCAGACCACAACTCAATGAGTT
63402622 TAGATTACGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (45 bp):
TGTCACATATATCACAAACTCAGACCACAACTCAATGAGTTCGGA
Found at i:63410415 original size:45 final size:45
Alignment explanation
Indices: 63410365--63410450 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
63410355 CCAAAACATG
63410365 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTTGGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTTGGA
* *
63410410 TGTCACATATATCATGAACTCAGACCATAACTCAATGAGTT
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTT
63410451 CAGATTACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTTGGA
Found at i:63413903 original size:22 final size:22
Alignment explanation
Indices: 63413878--63413922 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
63413868 CTCTTATGCC
63413878 AACACTAATGAAATCTTAACTA
1 AACACTAATGAAATCTTAACTA
*
63413900 AACACTAATGAAATCTTTACTA
1 AACACTAATGAAATCTTAACTA
63413922 A
1 A
63413923 CTTATATGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.29
Consensus pattern (22 bp):
AACACTAATGAAATCTTAACTA
Found at i:63422013 original size:2 final size:2
Alignment explanation
Indices: 63422006--63422036 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
63421996 GTGATATGGT
63422006 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63422037 CTATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63422298 original size:40 final size:38
Alignment explanation
Indices: 63422181--63422298 Score: 130
Period size: 39 Copynumber: 3.0 Consensus size: 38
63422171 AAAATTTATG
* *
63422181 TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
1 TGGTATGATATCCGGGTTAAATCCCGCAGGCTTAGTGC
* * * *
63422219 TGGTATTATATCCGGACTTATAGT-CCGCAGGCCTAGTGC
1 TGGTATGATATCCGG-GTTA-AATCCCGCAGGCTTAGTGC
*
63422258 TGGTAATAGATATCCGGGTTAAATCCCGCAGGCTTTGTGC
1 TGGT-AT-GATATCCGGGTTAAATCCCGCAGGCTTAGTGC
63422298 T
1 T
63422299 AGAAATTGGA
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
38 15 0.23
39 22 0.33
40 21 0.32
41 8 0.12
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
TGGTATGATATCCGGGTTAAATCCCGCAGGCTTAGTGC
Found at i:63431474 original size:36 final size:36
Alignment explanation
Indices: 63431427--63431497 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
63431417 AAGTTAAGAT
63431427 TAAATGGTGATATGGTTATATATATATATATATATG
1 TAAATGGTGATATGGTTATATATATATATATATATG
*
63431463 TAAATGGTGATATGGTTATATATATATATGTATAT
1 TAAATGGTGATATGGTTATATATATATATATATAT
63431498 ATTATTATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (36 bp):
TAAATGGTGATATGGTTATATATATATATATATATG
Found at i:63431683 original size:38 final size:38
Alignment explanation
Indices: 63431640--63431751 Score: 127
Period size: 39 Copynumber: 2.9 Consensus size: 38
63431630 AAAATTTATG
63431640 TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
1 TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
* * * * *
63431678 TGGTATTATATCCGGACTTATAGT-TCGCAGGCCTAGTGC
1 TGGTATTATATCCGG-GTTA-AATCCCGCAGGCTTAATGC
*
63431717 TGGTAATAGATATCCGGGTTAAATCCCGCAGGCTT
1 TGGT-AT-TATATCCGGGTTAAATCCCGCAGGCTT
63431752 TGTGCTAGAA
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
38 15 0.25
39 21 0.36
40 15 0.25
41 8 0.14
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
Found at i:63432439 original size:22 final size:21
Alignment explanation
Indices: 63432414--63432463 Score: 50
Period size: 21 Copynumber: 2.3 Consensus size: 21
63432404 CATTAGAATG
*
63432414 GCTAATCATGATCATAATTGGT-
1 GCTAATCATG-TCA-AATTGCTA
63432436 GCT-ATGCATGTCAAATTGCTA
1 GCTAAT-CATGTCAAATTGCTA
63432457 GCTAATC
1 GCTAATC
63432464 CATGGAAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
20 6 0.25
21 9 0.38
22 9 0.38
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (21 bp):
GCTAATCATGTCAAATTGCTA
Found at i:63440097 original size:33 final size:33
Alignment explanation
Indices: 63440058--63440124 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
63440048 ACTTAATAAT
* *
63440058 ATTCAACAATTAAAATTCGAATTAAACACTAAA
1 ATTCAACAATTAAAATTCAAATGAAACACTAAA
63440091 ATTCAACAATTAAAATTCAAATGAAACACTAAA
1 ATTCAACAATTAAAATTCAAATGAAACACTAAA
63440124 A
1 A
63440125 AATTAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.57, C:0.15, G:0.03, T:0.25
Consensus pattern (33 bp):
ATTCAACAATTAAAATTCAAATGAAACACTAAA
Found at i:63441181 original size:30 final size:31
Alignment explanation
Indices: 63441140--63441197 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
63441130 AAAATACTTC
* *
63441140 AAAA-TTTTTAAAATTTTAATTAAACCCTAT
1 AAAAGTTTTAAAAACTTTAATTAAACCCTAT
*
63441170 AAAAGTTTTAAAAACTTTGATTAAACCC
1 AAAAGTTTTAAAAACTTTAATTAAACCC
63441198 CAAAAGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 4 0.17
31 20 0.83
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (31 bp):
AAAAGTTTTAAAAACTTTAATTAAACCCTAT
Found at i:63441209 original size:30 final size:31
Alignment explanation
Indices: 63441139--63441209 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
63441129 TAAAATACTT
*
63441139 CAAAA-TTTTT-AAAATTTTAATTAAACCCTA
1 CAAAAGTTTTTAAAAACTTTAATTAAACCC-A
* *
63441169 TAAAAG-TTTTAAAAACTTTGATTAAACCC-
1 CAAAAGTTTTTAAAAACTTTAATTAAACCCA
63441198 CAAAAGTTTTTA
1 CAAAAGTTTTTA
63441210 GAAATTCTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
29 5 0.15
30 13 0.38
31 16 0.47
ACGTcount: A:0.45, C:0.13, G:0.04, T:0.38
Consensus pattern (31 bp):
CAAAAGTTTTTAAAAACTTTAATTAAACCCA
Found at i:63442752 original size:2 final size:2
Alignment explanation
Indices: 63442745--63442779 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
63442735 TAATTTTATC
*
63442745 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63442780 ATTTAGAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:63445194 original size:2 final size:2
Alignment explanation
Indices: 63445187--63445211 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
63445177 GTATAAGTAT
63445187 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
63445212 GGGTGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63447239 original size:2 final size:2
Alignment explanation
Indices: 63447232--63447280 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
63447222 AATTCACCCA
63447232 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63447274 AT AT AT A
1 AT AT AT A
63447281 CATCCTAATC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:63447841 original size:2 final size:2
Alignment explanation
Indices: 63447834--63447858 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
63447824 TCCAACGGCA
63447834 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
63447859 AACCCCTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:63450235 original size:62 final size:60
Alignment explanation
Indices: 63450119--63450235 Score: 137
Period size: 62 Copynumber: 1.9 Consensus size: 60
63450109 TTGTACAAAC
* ****
63450119 TATTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTAAATATTTTAATAGTATAT
1 TATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTAAATAAGGCAATAGTATAT
* *
63450179 TATTTTTATATT-TTGTCCTATTTAATAAAATAGAAGTTCTTTTGAATAAGGCAATAG
1 TATTTTTATATTGTT-T-C-ATTTAATAAAATAAAAGTTCTTTTAAATAAGGCAATAG
63450236 AAATAATGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
59 2 0.04
60 13 0.28
61 1 0.02
62 31 0.66
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (60 bp):
TATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTAAATAAGGCAATAGTATAT
Found at i:63453410 original size:120 final size:121
Alignment explanation
Indices: 63453123--63453473 Score: 451
Period size: 120 Copynumber: 2.9 Consensus size: 121
63453113 AAGTAGGCAT
63453123 TACTGTAGAAAAGAGCGTCCACGTGGAAGC-TTTTTCAGTAATTTTGCTGATAGTGCA-TCTTGC
1 TACTGTAGAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGATAGTGCATTC-TGC
* * * *
63453186 TTGAAGTGTTTTTGACACTATTTTGTTAGAATCGTCTTCTAAAAATTATTTTTTTAGGAAC
65 TTGAAG-CTTTTTGACATTATTTT-TTAGAACCGTCTTCT--CAATTATTTTTTTAGGAAC
*
63453247 TACTATAGAAAAGAGCGTCCACGTAGG-AGCTTTTTTCAGTAATTTTGCTGATAGTGCATTCTGC
1 TACTGTAGAAAAGAGCGTCCACGT-GGAAGCTTTTTTCAGTAATTTTGCTGATAGTGCATTCTGC
* *
63453311 TTAAAGCATTTTGACATTATTTTTTAGAACCGTCTTCTCAA-T-TTTTTTTAGGAAC
65 TTGAAGCTTTTTGACATTATTTTTTAGAACCGTCTTCTCAATTATTTTTTTAGGAAC
* * * * ** *
63453366 TACTGTAGAAGAACAGCGTCCACGTGGAAGCTTTTTTTAGTAATTTTGTTGACAGCCCATCCTGC
1 TACTGTAGAA-AAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGATAGTGCATTCTGC
*
63453431 TTGAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAA
65 TTGAAGC-TTTTTGACATTAT-TTTTTAGAACCGTCTTCTCAA
63453474 AATTAAATTT
Statistics
Matches: 202, Mismatches: 18, Indels: 16
0.86 0.08 0.07
Matches are distributed among these distances:
119 24 0.12
120 51 0.25
121 14 0.07
122 20 0.10
123 14 0.07
124 40 0.20
125 37 0.18
126 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (121 bp):
TACTGTAGAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGATAGTGCATTCTGCT
TGAAGCTTTTTGACATTATTTTTTAGAACCGTCTTCTCAATTATTTTTTTAGGAAC
Found at i:63453636 original size:34 final size:34
Alignment explanation
Indices: 63453588--63453722 Score: 121
Period size: 34 Copynumber: 3.9 Consensus size: 34
63453578 CTAAACATAA
* *
63453588 AAATTATTTAAAAAAAACTAAACCCTAATTTAAAT
1 AAATT-TTTTAAAAACACTAAACCCTAATTTAAAT
*
63453623 AAATTTTTTAAAAACTCTAAACCCTAATTT-AAT
1 AAATTTTTTAAAAACACTAAACCCTAATTTAAAT
* * * * *
63453656 TAATTTATTTAAAATCCCTAAAACCTAATTTAATT
1 AAATTT-TTTAAAAACACTAAACCCTAATTTAAAT
* * *
63453691 ATTATTTTTTTAAAACTA-TAAACCATAATTTA
1 A-AATTTTTTAAAAAC-ACTAAACCCTAATTTA
63453723 TTTCTTAAAA
Statistics
Matches: 81, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
33 8 0.10
34 43 0.53
35 26 0.32
36 4 0.05
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (34 bp):
AAATTTTTTAAAAACACTAAACCCTAATTTAAAT
Found at i:63458859 original size:16 final size:16
Alignment explanation
Indices: 63458838--63458882 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
63458828 ATTTTTATGT
63458838 TATAAATTATATAATA
1 TATAAATTATATAATA
*
63458854 TATAAATTTAACATAATA
1 TATAAA-TT-ATATAATA
*
63458872 TAAAAATTATA
1 TATAAATTATA
63458883 AACTTGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 8 0.33
17 4 0.17
18 12 0.50
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
TATAAATTATATAATA
Found at i:63463148 original size:46 final size:46
Alignment explanation
Indices: 63463088--63463263 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
63463078 TGGTTGAGCA
*
63463088 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63463134 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
63463179 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63463227 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63463264 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.58
47 28 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63463244 original size:93 final size:93
Alignment explanation
Indices: 63463085--63463256 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
63463075 GGATGGTTGA
* * *
63463085 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
63463150 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
63463178 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
63463243 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63463257 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:63466197 original size:15 final size:15
Alignment explanation
Indices: 63466158--63466237 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
63466148 GTATCTTGGG
*
63466158 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
63466173 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
63466188 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
63466203 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
63466218 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
63466232 TTTCTT
1 TTTCTT
63466238 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:63466227 original size:30 final size:30
Alignment explanation
Indices: 63466149--63466236 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
63466139 CATAGTATCG
* * *
63466149 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
63466179 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
63466209 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
63466237 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:63468672 original size:46 final size:46
Alignment explanation
Indices: 63468618--63468791 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
63468608 GGTTGAGCAT
*
63468618 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* * * * * *
63468664 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-GCTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACGTC
*
63468711 CGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* *
63468756 TCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63468792 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 2 0.02
46 67 0.64
47 36 0.34
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
Found at i:63468777 original size:93 final size:92
Alignment explanation
Indices: 63468614--63468784 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 92
63468604 GGATGGTTGA
* *
63468614 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGTT
63468679 GAGTCCGAGTTCGTGAAATGTAGCTAG
66 GAGTCCGAGTTCGTGAAATGTAGCTAG
*
63468706 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCAT-CGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTC-CGAACTCGTTGAG
63468770 TTGAGTCCGAGTTCG
64 TTGAGTCCGAGTTCG
63468785 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
92 5 0.07
93 69 0.93
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAGCTAG
Found at i:63470183 original size:16 final size:16
Alignment explanation
Indices: 63470162--63470196 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
63470152 GGCTGGGGAG
*
63470162 AATGGAATAGAGTTGT
1 AATGGAATAAAGTTGT
63470178 AATGGAATAAAGTTGT
1 AATGGAATAAAGTTGT
63470194 AAT
1 AAT
63470197 TAGTAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (16 bp):
AATGGAATAAAGTTGT
Found at i:63470493 original size:58 final size:57
Alignment explanation
Indices: 63470386--63470518 Score: 150
Period size: 58 Copynumber: 2.4 Consensus size: 57
63470376 ATTATTTAAT
* * *
63470386 ATTTAATAATAATAA-ATAATTTAGTTACATTTTAACATAATTTTTATT-AAATA-AA
1 ATTTAATAA-AATAATATAATTTAATAACATTTTAACATAATTATTATTAAAATATAA
* *
63470441 ATTTAATAAAATAATATATGATTTAATAACATTTTTAATATAATTATTATTAAAATATGA
1 ATTTAATAAAATAATATA--ATTTAATAACA-TTTTAACATAATTATTATTAAAATATAA
63470501 A-TTAATAAAA-AATATAAT
1 ATTTAATAAAATAATATAAT
63470519 ATATAATATT
Statistics
Matches: 67, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
54 5 0.07
55 12 0.18
56 2 0.03
57 9 0.13
58 23 0.34
59 14 0.21
60 2 0.03
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (57 bp):
ATTTAATAAAATAATATAATTTAATAACATTTTAACATAATTATTATTAAAATATAA
Found at i:63470550 original size:22 final size:21
Alignment explanation
Indices: 63470478--63470544 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 21
63470468 AACATTTTTA
63470478 ATATAATTATTATTAAAATATGA-
1 ATATAA-TATTA-TAAAATAT-AT
63470501 AT-TAATA--A-AAAATATAAT
1 ATATAATATTATAAAATAT-AT
63470519 ATATAATATTATAAAATAT-T
1 ATATAATATTATAAAATATAT
63470539 ATATAA
1 ATATAA
63470545 CCTATTTTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
17 8 0.21
18 2 0.05
19 6 0.16
20 7 0.18
21 3 0.08
22 10 0.26
23 2 0.05
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (21 bp):
ATATAATATTATAAAATATAT
Found at i:63474307 original size:33 final size:33
Alignment explanation
Indices: 63474265--63474329 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
63474255 TTGTTCCAAG
**
63474265 TTTGTTCCAATATGTCTCAATTAAATTGCAAAT
1 TTTGTTCCAATACATCTCAATTAAATTGCAAAT
*
63474298 TTTGTTCCAATACATCTCATTTAAATTGCAAA
1 TTTGTTCCAATACATCTCAATTAAATTGCAAA
63474330 GTTATATCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.42
Consensus pattern (33 bp):
TTTGTTCCAATACATCTCAATTAAATTGCAAAT
Found at i:63476161 original size:50 final size:48
Alignment explanation
Indices: 63476105--63476351 Score: 137
Period size: 51 Copynumber: 4.9 Consensus size: 48
63476095 ATTACATTCA
*
63476105 TAACAAATCACAGTAAATGTTAAACTAAACAAATAATTTATAATAATTAC
1 TAACAAATCACAATAAA--TTAAACTAAACAAATAATTTATAATAATTAC
* ** * * ** *
63476155 TAACAAAATAACTTTAAAATAAATTAAAAACAACATAA-AAAT-TTACATT-C
1 TAAC-AAATCACAATAAATTAAACT--AAACAA-ATAATTTATAATA-ATTAC
63476205 ATAACAAATCACAATAAACATTAAACTAAACAAATAATTTATAATAATTAC
1 -TAACAAATCACAAT-AA-ATTAAACTAAACAAATAATTTATAATAATTAC
* ** * * ** *
63476256 TAACAAAATAACTTTAAAATAAATTAAAAACAACATAA-AAAT-TTACATT-C
1 TAAC-AAATCACAATAAATTAAACT--AAACAA-ATAATTTATAATA-ATTAC
63476306 ATAACAAATCACAATAAACATTAAACTAAACAAATAATTTATAATA
1 -TAACAAATCACAAT-AA-ATTAAACTAAACAAATAATTTATAATA
63476352 GTTATTAATC
Statistics
Matches: 144, Mismatches: 32, Indels: 41
0.66 0.15 0.19
Matches are distributed among these distances:
49 19 0.13
50 49 0.34
51 56 0.39
52 20 0.14
ACGTcount: A:0.59, C:0.13, G:0.01, T:0.28
Consensus pattern (48 bp):
TAACAAATCACAATAAATTAAACTAAACAAATAATTTATAATAATTAC
Found at i:63476186 original size:27 final size:25
Alignment explanation
Indices: 63476131--63476192 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
63476121 ATGTTAAACT
* *
63476131 AAAC-AAATAATTTATAATAATTAC
1 AAACAAAATAATTTAAAATAATTAA
*
63476155 TAACAAAATAACTTTAAAATAAATTAA
1 AAACAAAATAA-TTTAAAAT-AATTAA
*
63476182 AAACAACATAA
1 AAACAAAATAA
63476193 AAATTTACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 3 0.10
25 6 0.20
26 7 0.23
27 14 0.47
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (25 bp):
AAACAAAATAATTTAAAATAATTAA
Found at i:63476210 original size:51 final size:51
Alignment explanation
Indices: 63476155--63476313 Score: 168
Period size: 51 Copynumber: 3.1 Consensus size: 51
63476145 TAATAATTAC
63476155 TAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCA
1 TAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCA
* ** * ** *
63476206 TAAC-AAATCACAATAAACATTAAACT--AAACAA-ATAATTTATAATA-ATT-A
1 TAACAAAATAACTTTAAA-A-TAAATTAAAAACAACATAA-AAAT-TTACATTCA
63476255 CTAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCA
1 -TAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCA
63476307 TAACAAA
1 TAACAAA
63476314 TCACAATAAA
Statistics
Matches: 83, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
49 10 0.12
50 28 0.34
51 35 0.42
52 10 0.12
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (51 bp):
TAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCA
Found at i:63476245 original size:46 final size:46
Alignment explanation
Indices: 63476194--63476346 Score: 139
Period size: 47 Copynumber: 3.1 Consensus size: 46
63476184 ACAACATAAA
63476194 AATTTACATTCATAACAAATCACAATAAACATTAAACTAAACAAAT
1 AATTTACATTCATAACAAATCACAATAAACATTAAACTAAACAAAT
* * * * * *
63476240 AATTTATAATAATTACTAACAAAATAACTTTAA-AATAAATTAAA-AACAACATAAA
1 AATTTA-CAT--TCA-TAAC-AAATCAC---AATAA-ACATTAAACTA-AACA-AAT
63476295 AATTTACATTCATAACAAATCACAATAAACATTAAACTAAACAAAT
1 AATTTACATTCATAACAAATCACAATAAACATTAAACTAAACAAAT
63476341 AATTTA
1 AATTTA
63476347 TAATAGTTAT
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
46 14 0.17
47 15 0.18
48 3 0.04
49 2 0.02
50 10 0.12
51 10 0.12
52 2 0.02
53 3 0.04
54 15 0.18
55 8 0.10
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (46 bp):
AATTTACATTCATAACAAATCACAATAAACATTAAACTAAACAAAT
Found at i:63476287 original size:27 final size:25
Alignment explanation
Indices: 63476232--63476293 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
63476222 ACATTAAACT
* *
63476232 AAAC-AAATAATTTATAATAATTAC
1 AAACAAAATAATTTAAAATAATTAA
*
63476256 TAACAAAATAACTTTAAAATAAATTAA
1 AAACAAAATAA-TTTAAAAT-AATTAA
*
63476283 AAACAACATAA
1 AAACAAAATAA
63476294 AAATTTACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 3 0.10
25 6 0.20
26 7 0.23
27 14 0.47
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (25 bp):
AAACAAAATAATTTAAAATAATTAA
Found at i:63476375 original size:101 final size:101
Alignment explanation
Indices: 63476051--63476351 Score: 520
Period size: 101 Copynumber: 3.0 Consensus size: 101
63476041 CAAATGAAGT
* * *
63476051 TAATTACTAACAAAATCACTTTAAAATAAATT-TAAA-AAGA-AAAAA-TTACATTCATAACAAA
1 TAATTACTAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCATAACAAA
* **
63476112 TCACAGTAAATGTTAAACTAAACAAATAATTTATAA
66 TCACAATAAACATTAAACTAAACAAATAATTTATAA
63476148 TAATTACTAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCATAACAAA
1 TAATTACTAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCATAACAAA
63476213 TCACAATAAACATTAAACTAAACAAATAATTTATAA
66 TCACAATAAACATTAAACTAAACAAATAATTTATAA
63476249 TAATTACTAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCATAACAAA
1 TAATTACTAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCATAACAAA
63476314 TCACAATAAACATTAAACTAAACAAATAATTTATAA
66 TCACAATAAACATTAAACTAAACAAATAATTTATAA
63476350 TA
1 TA
63476352 GTTATTAATC
Statistics
Matches: 194, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
97 31 0.16
98 3 0.02
99 3 0.02
100 5 0.03
101 152 0.78
ACGTcount: A:0.58, C:0.12, G:0.01, T:0.28
Consensus pattern (101 bp):
TAATTACTAACAAAATAACTTTAAAATAAATTAAAAACAACATAAAAATTTACATTCATAACAAA
TCACAATAAACATTAAACTAAACAAATAATTTATAA
Found at i:63476432 original size:19 final size:21
Alignment explanation
Indices: 63476410--63476450 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
63476400 TCTTCTTTAC
63476410 TCTCCTTT-ATT-TTTTGCCT
1 TCTCCTTTCATTCTTTTGCCT
*
63476429 TCTCCTTTCTTTCTTTTGCCT
1 TCTCCTTTCATTCTTTTGCCT
63476450 T
1 T
63476451 TCTTTCCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 2 0.11
21 9 0.47
ACGTcount: A:0.02, C:0.29, G:0.05, T:0.63
Consensus pattern (21 bp):
TCTCCTTTCATTCTTTTGCCT
Found at i:63476915 original size:15 final size:15
Alignment explanation
Indices: 63476899--63476930 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
63476889 ATATATTATT
63476899 TTTTA-TTT-TAATA
1 TTTTATTTTATAATA
63476912 TTTTATTTTATAATA
1 TTTTATTTTATAATA
63476927 TTTT
1 TTTT
63476931 GGTAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.29
14 3 0.18
15 9 0.53
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATTTTATAATA
Found at i:63478624 original size:21 final size:21
Alignment explanation
Indices: 63478600--63478660 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
63478590 TTGAGCTTTT
63478600 GTTTAACCCTTATGGGTTTCC
1 GTTTAACCCTTATGGGTTTCC
* ** * * *
63478621 GTTTAGCTTTTACGAGCTTCC
1 GTTTAACCCTTATGGGTTTCC
*
63478642 GTTCAACCCTTATGGGTTT
1 GTTTAACCCTTATGGGTTT
63478661 TTGTTTAGCT
Statistics
Matches: 27, Mismatches: 13, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (21 bp):
GTTTAACCCTTATGGGTTTCC
Found at i:63478638 original size:42 final size:42
Alignment explanation
Indices: 63478548--63478670 Score: 140
Period size: 42 Copynumber: 2.9 Consensus size: 42
63478538 TTTAGCTCAC
* * * *
63478548 ACGAGCTTCTGTTTAACTCATATGAGTTTCCTTTTAGCTCTTT
1 ACGAGCTTCTGTTTAACCCTTATGGGTTTCCGTTTAGCT-TTT
* *
63478591 -TGAGCTTTTGTTTAACCCTTATGGGTTTCCGTTTAGCTTTT
1 ACGAGCTTCTGTTTAACCCTTATGGGTTTCCGTTTAGCTTTT
* * **
63478632 ACGAGCTTCCGTTCAACCCTTATGGGTTTTTGTTTAGCT
1 ACGAGCTTCTGTTTAACCCTTATGGGTTTCCGTTTAGCT
63478671 CTCATGAACT
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
41 3 0.04
42 64 0.96
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.46
Consensus pattern (42 bp):
ACGAGCTTCTGTTTAACCCTTATGGGTTTCCGTTTAGCTTTT
Found at i:63480557 original size:21 final size:21
Alignment explanation
Indices: 63480527--63480577 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
63480517 CCTTCTTGCT
*
63480527 TACGAACTTTGAAAGGGCCCC
1 TACGATCTTTGAAAGGGCCCC
63480548 TACGATCTTTGAAAGGGCCCC
1 TACGATCTTTGAAAGGGCCCC
63480569 TACGATCTT
1 TACGATCTT
63480578 GCCAAGCCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (21 bp):
TACGATCTTTGAAAGGGCCCC
Found at i:63483395 original size:39 final size:39
Alignment explanation
Indices: 63483352--63483430 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
63483342 ATAGATTAAG
* *
63483352 AGGCATTATCGAACTTATAACTCAGTTCAAAACAATCAT
1 AGGCATTACCAAACTTATAACTCAGTTCAAAACAATCAT
63483391 AGGCATTACCAAACTTATAACTCAGTTCAAAACAATCAT
1 AGGCATTACCAAACTTATAACTCAGTTCAAAACAATCAT
63483430 A
1 A
63483431 TATCAAATAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.27
Consensus pattern (39 bp):
AGGCATTACCAAACTTATAACTCAGTTCAAAACAATCAT
Found at i:63487641 original size:30 final size:30
Alignment explanation
Indices: 63487564--63487655 Score: 87
Period size: 36 Copynumber: 2.9 Consensus size: 30
63487554 GAATATTGGA
*
63487564 TCTTCCCAAGCTCCTGAATGAC-ATATCAAG
1 TCTTTCCAAGCTCCTGAATG-CGATATCAAG
63487594 TCTTTTCAATCCCAAGCTCCTGAATGCGATATCAAG
1 TC--TT---T-CCAAGCTCCTGAATGCGATATCAAG
* *
63487630 TCTTTCCAAGCTCCTAAATGAGATAT
1 TCTTTCCAAGCTCCTGAATGCGATAT
63487656 TGGGTCTTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
30 21 0.40
31 1 0.02
32 2 0.04
34 2 0.04
35 1 0.02
36 25 0.48
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.30
Consensus pattern (30 bp):
TCTTTCCAAGCTCCTGAATGCGATATCAAG
Found at i:63492123 original size:40 final size:39
Alignment explanation
Indices: 63491958--63492141 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63491948 AAATTGAATG
* * *
63491958 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63491998 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63492038 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63492078 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63492117 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63492142 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63492166 original size:80 final size:81
Alignment explanation
Indices: 63491998--63492186 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63491988 GCTGGAAATT
* * * *
63491998 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63492063 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63492079 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63492142 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63492158 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63492187 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63496882 original size:40 final size:39
Alignment explanation
Indices: 63496717--63496900 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63496707 AAATTGAATG
* * *
63496717 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63496757 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63496797 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63496837 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63496876 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63496901 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63496925 original size:80 final size:81
Alignment explanation
Indices: 63496757--63496945 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63496747 GCTGGAAATT
* * * *
63496757 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63496822 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63496838 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63496901 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63496917 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63496946 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63504993 original size:40 final size:39
Alignment explanation
Indices: 63504828--63505011 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63504818 AAATTGAATG
* * *
63504828 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63504868 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63504908 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63504948 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63504987 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63505012 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63505036 original size:80 final size:81
Alignment explanation
Indices: 63504868--63505056 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63504858 GCTGGAAATT
* * * *
63504868 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63504933 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63504949 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63505012 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63505028 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63505057 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63506914 original size:48 final size:47
Alignment explanation
Indices: 63506843--63507070 Score: 222
Period size: 48 Copynumber: 4.8 Consensus size: 47
63506833 AGGGTAAATT
* * *
63506843 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATGAG
* * * *
63506891 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-GAG
* * * * * ** *
63506939 GCCGATGCCATATCCCAGACATAGACTTACTCTGGCTCTCATAACATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGA-G
** * * *
63506987 GCCGATGCCATGTTTCAAACATGGTCTTACAATAGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATGAG
* *
63507035 GCCGATGTCATGTCCCAGACATAGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
63507071 ACACATATCA
Statistics
Matches: 143, Mismatches: 34, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
47 2 0.01
48 140 0.98
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGAG
Found at i:63508712 original size:12 final size:12
Alignment explanation
Indices: 63508691--63508739 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
63508681 CCTTTGAGTT
* *
63508691 TATTTATTTTAT
1 TATTAATTTTAA
*
63508703 TATTATTTTTAA
1 TATTAATTTTAA
63508715 TATTAATTTTAA
1 TATTAATTTTAA
*
63508727 TTTTAATTTTAA
1 TATTAATTTTAA
63508739 T
1 T
63508740 TTTCTTTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTAATTTTAA
Found at i:63508720 original size:6 final size:6
Alignment explanation
Indices: 63508696--63508742 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
63508686 GAGTTTATTT
* *
63508696 ATTTT- ATTATTA TTTTTA ATATTA ATTTTA ATTTTA ATTTTA ATTTT
1 ATTTTA ATT-TTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTT
63508743 CTTTTATTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
5 3 0.08
6 31 0.86
7 2 0.06
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTTA
Found at i:63509815 original size:26 final size:26
Alignment explanation
Indices: 63509779--63509835 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
63509769 CATGCTATGG
63509779 GTTAAAGCATATTATAAACATTTTGT
1 GTTAAAGCATATTATAAACATTTTGT
63509805 GTTAAAGCATATTATAAACATTTTGT
1 GTTAAAGCATATTATAAACATTTTGT
63509831 GTTAA
1 GTTAA
63509836 TGTTTTATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (26 bp):
GTTAAAGCATATTATAAACATTTTGT
Found at i:63511264 original size:40 final size:40
Alignment explanation
Indices: 63511209--63511350 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
63511199 TATTCGAATG
*
63511209 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
63511249 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
63511289 GTATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
63511329 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
63511351 TACTTGGGTT
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 13 0.14
40 75 0.83
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:63519307 original size:40 final size:40
Alignment explanation
Indices: 63519252--63519419 Score: 266
Period size: 40 Copynumber: 4.2 Consensus size: 40
63519242 TATTCGAATA
63519252 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
63519292 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
63519332 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * ** *
63519372 ATATCCAGGCTAAGACTAGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
63519412 ATATCCGG
1 ATATCCGG
63519420 CTTAATCCTG
Statistics
Matches: 120, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 117 0.98
41 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:63532017 original size:39 final size:39
Alignment explanation
Indices: 63531746--63532005 Score: 439
Period size: 39 Copynumber: 6.7 Consensus size: 39
63531736 AAGACACTGA
63531746 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
63531785 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63531824 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63531863 AAATATATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
63531902 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63531941 AAATGTATCCGGGCCAAAGTCTCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
63531980 AAATGTATCCGGGTTAAAGTCCCGCA
1 AAATGTATCCGGGCTAAAGTCCCGCA
63532006 TGTTTTGTGC
Statistics
Matches: 210, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 210 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.22
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:63534389 original size:48 final size:49
Alignment explanation
Indices: 63534314--63534538 Score: 197
Period size: 48 Copynumber: 4.7 Consensus size: 49
63534304 GTAAATTACT
* * * * *
63534314 GATGCCATGTCCCAGACATGGTGTTACATTGGCTCACATGTTGA-GGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATCACGGCC
* * * *
63534362 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGT-CTCACTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATCACGGCC
* * * * **
63534410 GATGCCATGTCCCAAACATGGTCTTACTCTAGCTCTCAT-AACATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATCACGGCC
* * * * ** *
63534458 AATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATCACGGCC
* * *
63534506 GATGCCATGTCCTAGATATGGTCTTGCACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
63534539 ACACATATCA
Statistics
Matches: 147, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
47 2 0.01
48 144 0.98
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATCACGGCC
Found at i:63544923 original size:20 final size:20
Alignment explanation
Indices: 63544895--63544941 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
63544885 TCATTGACTA
*
63544895 ATCACTTTGAATTGGTGTCC
1 ATCATTTTGAATTGGTGTCC
63544915 ATCATTTTGAATTGGTGTCC
1 ATCATTTTGAATTGGTGTCC
63544935 ATCATTT
1 ATCATTT
63544942 AAATCTCTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.45
Consensus pattern (20 bp):
ATCATTTTGAATTGGTGTCC
Found at i:63553391 original size:15 final size:15
Alignment explanation
Indices: 63553351--63553392 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
63553341 TATTATCTTA
*
63553351 AAATTATAAAA-AAG
1 AAATTATAAAATTAG
*
63553365 AAATTATCAAATTAG
1 AAATTATAAAATTAG
*
63553380 AAATTTTAAAATT
1 AAATTATAAAATT
63553393 TTTACTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (15 bp):
AAATTATAAAATTAG
Done.