Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 208 of 410
Found at i:63559027 original size:14 final size:13
Alignment explanation
Indices: 63559005--63559061 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
63558995 AATTAAAGTG
63559005 TAATTAAAATTTT
1 TAATTAAAATTTT
*
63559018 TAATTTAAAA-ATT
1 TAA-TTAAAATTTT
*
63559031 TAATGAAAATTTT
1 TAATTAAAATTTT
*
63559044 CTAAATTAAACTTTT
1 -T-AATTAAAATTTT
63559059 TAA
1 TAA
63559062 AAATTTTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
12 5 0.14
13 12 0.34
14 8 0.23
15 10 0.29
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (13 bp):
TAATTAAAATTTT
Found at i:63559558 original size:26 final size:25
Alignment explanation
Indices: 63559529--63559599 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
63559519 TATGTAGTTC
63559529 ATTTTTAATTAATTTTTAAATAACA
1 ATTTTTAATTAATTTTTAAATAACA
* ** *
63559554 TATTTTTAATT-ATTGTTACTTAATA
1 -ATTTTTAATTAATTTTTAAATAACA
63559579 ATTTTT--TTAATTTTTAAATAA
1 ATTTTTAATTAATTTTTAAATAA
63559600 TATACAAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
22 2 0.05
23 9 0.24
24 6 0.16
25 10 0.27
26 10 0.27
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (25 bp):
ATTTTTAATTAATTTTTAAATAACA
Found at i:63559600 original size:23 final size:25
Alignment explanation
Indices: 63559529--63559603 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 25
63559519 TATGTAGTTC
*
63559529 ATTTTTAATTAATTTTTAAATAACAT
1 ATTTTT-ATTAATTTTTAAATAATAT
* **
63559555 ATTTTTAATT-ATTGTTACTTAATA-
1 ATTTTT-ATTAATTTTTAAATAATAT
63559579 ATTTTT-TTAATTTTTAAATAATAT
1 ATTTTTATTAATTTTTAAATAATAT
63559603 A
1 A
63559604 CAAATTTGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
22 2 0.05
23 11 0.28
24 7 0.17
25 10 0.25
26 10 0.25
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (25 bp):
ATTTTTATTAATTTTTAAATAATAT
Found at i:63559813 original size:2 final size:2
Alignment explanation
Indices: 63559806--63559831 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63559796 AACAACAAAA
63559806 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
63559832 TTAAAGTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63560641 original size:2 final size:2
Alignment explanation
Indices: 63560636--63560672 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
63560626 GATCTGTTCT
63560636 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63560673 TTCTTTAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:63567117 original size:91 final size:95
Alignment explanation
Indices: 63566963--63567411 Score: 455
Period size: 91 Copynumber: 4.8 Consensus size: 95
63566953 GATAAATTAT
* * * * **
63566963 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCG-TGTTGATGCATGTCCCA
1 CGATGCCATGTCCCAGACATCGTCTTACACTGGCTATC-TCTAT-CGAGGCCGATGCATGTCCCA
63567027 GACATGTCTTACAT-TAGCACAACTCT-TAGC
64 GACATGTCTTACATCTAGCACAACTCTCTAGC
* *
63567057 CGATG-CGTGTCCCAGACA-CATCTTACACTGGCTATCTCTATCGAGGCCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCTCTATCGAGGCCGATGCATGTCCCAGA
* * *
63567120 CATGTCTTAC-TCTGGCAC-TCATCTCTGTGC
66 CATGTCTTACATCTAGCACAAC-TCTCT-AGC
* * * * * * *
63567150 CGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATATATGCG-TGCTGATGCATGTCCCA
1 CGATGCCATGTCCCAGACATCGTCTTACACTGGCTATC-TCTAT-CGAGGCCGATGCATGTCCCA
63567214 GACATGTCTTACA-CTAGCACAACTCT-TAGC
64 GACATGTCTTACATCTAGCACAACTCTCTAGC
* * *
63567244 CGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATCTCTGTCGAGGCTGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCTCTATCGAGGCCGATGCATGTCCCAGA
* *
63567307 CATGTCTTAC-TCTGGCAC-TCATCTCTATGC
66 CATGTCTTACATCTAGCACAAC-TCTCTA-GC
* * *
63567337 CGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT-GTGGCCGAAGCATGTCCCA
1 CGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCTC-T-ATCGAGGCCGATGCATGTCCCA
63567399 GACATGTCTTACA
64 GACATGTCTTACA
63567412 CTGGCGCATA
Statistics
Matches: 295, Mismatches: 39, Indels: 41
0.79 0.10 0.11
Matches are distributed among these distances:
90 7 0.02
91 78 0.26
92 33 0.11
93 41 0.14
94 64 0.22
95 29 0.10
96 40 0.14
97 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCTCTATCGAGGCCGATGCATGTCCCAGA
CATGTCTTACATCTAGCACAACTCTCTAGC
Found at i:63567118 original size:47 final size:46
Alignment explanation
Indices: 63566963--63567416 Score: 326
Period size: 47 Copynumber: 9.7 Consensus size: 46
63566953 GATAAATTAT
* * *
63566963 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATATATGCGTGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTC-TAT-CGAG-GC
* * * *
63567013 TGATGCATGTCCCAGACATGTCTTACATTAGCACAACTCT-T--A-GC
1 CGATGCATGTCCCAGACATGTCTTACACT-G-GCATCTCTATCGAGGC
* **
63567057 CGATGCGTGTCCCAGACACATCTTACACTGGCTATCTCTATCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCTATCGAGGC
* * *
63567104 CGATGCATGTCCCAGACATGTCTTACTCTGGCA-CTCATCTCTG-TGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCATCTC-TATC-GAGGC
* * * *
63567150 CGATGCCATGTCTCAGACATGGTCTTACACTAGC-TCTCATATATGCGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTC-TAT-CGAG-GC
* * *
63567200 TGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T--A-GC
1 CGATGCATGTCCCAGACATGTCTTACACT-G-GCATCTCTATCGAGGC
* * *
63567244 CGATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCTATCGAGGC
* * * * *
63567291 TGATGCATGTCCCAGACATGTCTTACTCTGGCA-CTCATCTCTATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCATCTC-TATCGAGGC
*
63567337 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTC-T-ATCGAGGC
*
63567385 CGAAGCATGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
63567417 GCATAAATCA
Statistics
Matches: 325, Mismatches: 50, Indels: 62
0.74 0.11 0.14
Matches are distributed among these distances:
42 2 0.01
43 12 0.04
44 55 0.17
45 6 0.02
46 37 0.11
47 102 0.31
48 60 0.18
49 31 0.10
50 14 0.04
51 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCATCTCTATCGAGGC
Found at i:63567255 original size:140 final size:136
Alignment explanation
Indices: 63567014--63567416 Score: 322
Period size: 140 Copynumber: 2.9 Consensus size: 136
63567004 TATGCGTGTT
* * * *
63567014 GATGCATGTCCCAGACATGTCTTACATTAGCAC-AACTCT-TA-GCCGATG-CGTGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCA-TATATATGCCGATGCCATGTCCCAGACA
** * * * * *
63567075 -CATCTTACACTGGC-TATCTCTATCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCAC
65 TGGTCTTACACTAGCACAACTCT-T--A-GCCGATGCATGTCCCAGACACGTCTTACACTGG--C
63567138 TCATCTCTGT-GCC
124 T-ATCTCTGTGGCC
* * * *
63567151 GATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATG-CATGTCCCAG
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATATAT--ATGCCGATGCCATGTCCCAG
*
63567215 ACAT-GTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTAT
62 ACATGGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTAT
*
63567279 CTCTGTCGAGGCT
127 CTCTGT---GGCC
* * * *
63567292 GATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTATGCCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATATATATGCCGATGCCATGTCCCAGACAT
* * * * * * *
63567357 GGTCTTACACTGGCTCTCATAAT-GTGGCCGAAGCATGTCCCAGACATGTCTTACACTGGC
66 GGTCTTACACTAG--CACA-ACTCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGC
63567417 GCATAAATCA
Statistics
Matches: 216, Mismatches: 32, Indels: 32
0.77 0.11 0.11
Matches are distributed among these distances:
137 19 0.09
138 29 0.13
139 44 0.20
140 45 0.21
141 42 0.19
142 2 0.01
143 30 0.14
144 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (136 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATATATATGCCGATGCCATGTCCCAGACAT
GGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCTCT
GTGGCC
Found at i:63567278 original size:187 final size:187
Alignment explanation
Indices: 63566963--63567413 Score: 789
Period size: 187 Copynumber: 2.4 Consensus size: 187
63566953 GATAAATTAT
*
63566963 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGTTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTCCCAG
*
63567028 ACATGTCTTACATTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACATCTTACACTGGCTATC
66 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACATCTTACACTGGCTATC
*
63567093 TCTATCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
131 TCTATCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTATGC
* *
63567150 CGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTCCCAG
*
63567215 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
66 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACATCTTACACTGGCTATC
* *
63567280 TCTGTCGAGGCTGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTATGC
131 TCTATCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTATGC
* * *
63567337 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCCGAAGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTCCCAG
63567400 ACATGTCTTACACT
66 ACATGTCTTACACT
63567414 GGCGCATAAA
Statistics
Matches: 251, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
185 29 0.12
186 4 0.02
187 218 0.87
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (187 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTCCCAG
ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACATCTTACACTGGCTATC
TCTATCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTATGC
Found at i:63572406 original size:276 final size:276
Alignment explanation
Indices: 63571913--63572464 Score: 1104
Period size: 276 Copynumber: 2.0 Consensus size: 276
63571903 TTAGTGGACT
63571913 CTACTAGCATGTTTATACGAGGTATTAATTCTATACATATGTAAGAGTGGGTAGATCCTGGGTCA
1 CTACTAGCATGTTTATACGAGGTATTAATTCTATACATATGTAAGAGTGGGTAGATCCTGGGTCA
63571978 ATTAAAGCGACAACAGTTATATCGTGAATAGAAAAGGTACCCGTGATCACGTCTGGAAACTCTAC
66 ATTAAAGCGACAACAGTTATATCGTGAATAGAAAAGGTACCCGTGATCACGTCTGGAAACTCTAC
63572043 CTCTTCTCGGGCTCTATAGCATAGGTCATCGCTGGCACTTTGCCTTCGACCTCATCGCGGCATCT
131 CTCTTCTCGGGCTCTATAGCATAGGTCATCGCTGGCACTTTGCCTTCGACCTCATCGCGGCATCT
63572108 CTCGGTGTACCTCTACTACTAGTCCCACTCCCAGAGTTCCTTTGAGGCCTACCCCTCAAGGGAGC
196 CTCGGTGTACCTCTACTACTAGTCCCACTCCCAGAGTTCCTTTGAGGCCTACCCCTCAAGGGAGC
63572173 ACTGCTTGCTTTCACA
261 ACTGCTTGCTTTCACA
63572189 CTACTAGCATGTTTATACGAGGTATTAATTCTATACATATGTAAGAGTGGGTAGATCCTGGGTCA
1 CTACTAGCATGTTTATACGAGGTATTAATTCTATACATATGTAAGAGTGGGTAGATCCTGGGTCA
63572254 ATTAAAGCGACAACAGTTATATCGTGAATAGAAAAGGTACCCGTGATCACGTCTGGAAACTCTAC
66 ATTAAAGCGACAACAGTTATATCGTGAATAGAAAAGGTACCCGTGATCACGTCTGGAAACTCTAC
63572319 CTCTTCTCGGGCTCTATAGCATAGGTCATCGCTGGCACTTTGCCTTCGACCTCATCGCGGCATCT
131 CTCTTCTCGGGCTCTATAGCATAGGTCATCGCTGGCACTTTGCCTTCGACCTCATCGCGGCATCT
63572384 CTCGGTGTACCTCTACTACTAGTCCCACTCCCAGAGTTCCTTTGAGGCCTACCCCTCAAGGGAGC
196 CTCGGTGTACCTCTACTACTAGTCCCACTCCCAGAGTTCCTTTGAGGCCTACCCCTCAAGGGAGC
63572449 ACTGCTTGCTTTCACA
261 ACTGCTTGCTTTCACA
63572465 TCTTGTTTTC
Statistics
Matches: 276, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
276 276 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (276 bp):
CTACTAGCATGTTTATACGAGGTATTAATTCTATACATATGTAAGAGTGGGTAGATCCTGGGTCA
ATTAAAGCGACAACAGTTATATCGTGAATAGAAAAGGTACCCGTGATCACGTCTGGAAACTCTAC
CTCTTCTCGGGCTCTATAGCATAGGTCATCGCTGGCACTTTGCCTTCGACCTCATCGCGGCATCT
CTCGGTGTACCTCTACTACTAGTCCCACTCCCAGAGTTCCTTTGAGGCCTACCCCTCAAGGGAGC
ACTGCTTGCTTTCACA
Found at i:63576480 original size:48 final size:46
Alignment explanation
Indices: 63576404--63576519 Score: 135
Period size: 47 Copynumber: 2.5 Consensus size: 46
63576394 CTGATACATG
* * * *
63576404 TCCCAGACATGTCTTACTCTGGCACTCAT-CTCTGTGCCGATGCCATA
1 TCCCAGACATGTCTTACACTGGCACTCATAATGTG-GCCGAAG-CATA
* * *
63576451 TCCCAGACATGGTCTTACACTGTCTCTCATAATGTGGCCGAAGCATG
1 TCCCAGACAT-GTCTTACACTGGCACTCATAATGTGGCCGAAGCATA
63576498 TCCCAGACATGTCTTACACTGG
1 TCCCAGACATGTCTTACACTGG
63576520 TGCACAAATC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
46 11 0.19
47 23 0.39
48 22 0.37
49 3 0.05
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTGGCACTCATAATGTGGCCGAAGCATA
Found at i:63576506 original size:94 final size:91
Alignment explanation
Indices: 63576250--63576519 Score: 262
Period size: 94 Copynumber: 2.9 Consensus size: 91
63576240 ATGGGATAAA
* * * *
63576250 TTGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTC
1 TTGCCGATGCCATGTCCCAGACATGGTCTTACACTGTCTCTCATA-ATGAG-GCTGAAGCATGTC
* *
63576315 CTAGACATGTCTTACACTAGCACAACTC
64 CCAGACATGTCTTACACTGGCACAACTC
* * * * * *
63576343 TTAGCCAATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATCTC-T-GTCGAGGCTGATA-CAT
1 TT-GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-TCTCTCATAAT-GAGGCTGA-AGCAT
* *
63576403 GTCCCAGACATGTCTTACTCTGGCACTCATCTC
61 GTCCCAGACATGTCTTACACTGGCA--CAACTC
* * *
63576436 TGTGCCGATGCCATATCCCAGACATGGTCTTACACTGTCTCTCATAATGTGGCCGAAGCATGTCC
1 T-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGTCTCTCATAATGAGGCTGAAGCATGTCC
63576501 CAGACATGTCTTACACTGG
65 CAGACATGTCTTACACTGG
63576520 TGCACAAATC
Statistics
Matches: 140, Mismatches: 24, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
91 31 0.22
92 12 0.09
93 32 0.23
94 54 0.39
95 11 0.08
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (91 bp):
TTGCCGATGCCATGTCCCAGACATGGTCTTACACTGTCTCTCATAATGAGGCTGAAGCATGTCCC
AGACATGTCTTACACTGGCACAACTC
Found at i:63581888 original size:18 final size:18
Alignment explanation
Indices: 63581837--63581889 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
63581827 CTGGCACTCT
* *
63581837 ATAACAGTCAGTTATGCA
1 ATAACAGTCAATTATTCA
* **
63581855 GTAACAGTCTTTTATTCA
1 ATAACAGTCAATTATTCA
63581873 ATAACAGTCAATTATTC
1 ATAACAGTCAATTATTC
63581890 CGTAGCAGTC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (18 bp):
ATAACAGTCAATTATTCA
Found at i:63582134 original size:48 final size:48
Alignment explanation
Indices: 63582037--63582134 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 48
63582027 ACAGTCTCAA
* * * * *
63582037 TCACGATACACAAAGTACCTCATCGGAACAAATCTGGAATAGTCCCAG
1 TCACGATACACAAAGTACCTCATCGGAACAAATCCGAAACAATCACAG
* * *
63582085 TCACGGTACACTAAGTACCTCATCGGAACGAATCCGAAACAATCACAG
1 TCACGATACACAAAGTACCTCATCGGAACAAATCCGAAACAATCACAG
63582133 TC
1 TC
63582135 TGGCGACACT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.37, C:0.29, G:0.16, T:0.18
Consensus pattern (48 bp):
TCACGATACACAAAGTACCTCATCGGAACAAATCCGAAACAATCACAG
Found at i:63582425 original size:3 final size:3
Alignment explanation
Indices: 63582417--63582449 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
63582407 ATTCAATACC
63582417 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
63582450 CTTACCATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:63583204 original size:11 final size:11
Alignment explanation
Indices: 63583179--63583220 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 11
63583169 TATATATGTA
63583179 TAATAATAA--
1 TAATAATAACT
63583188 TAATAATAACT
1 TAATAATAACT
63583199 TAATAATATACT
1 TAATAATA-ACT
63583211 TATATAATAA
1 TA-ATAATAA
63583221 GTAAATATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.31
11 8 0.28
12 6 0.21
13 6 0.21
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATAATAACT
Found at i:63584217 original size:22 final size:21
Alignment explanation
Indices: 63584192--63584242 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 21
63584182 CACAAAAGTC
*
63584192 CTCTCATAATTCTCTCTAAATT
1 CTCTCAAAATTCTCTC-AAATT
63584214 CTCTCAAAATTCTCTCAAATT
1 CTCTCAAAATTCTCTCAAATT
*
63584235 TTCTCAAA
1 CTCTCAAA
63584243 GCTCTCTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.41
Consensus pattern (21 bp):
CTCTCAAAATTCTCTCAAATT
Found at i:63584239 original size:10 final size:10
Alignment explanation
Indices: 63584192--63584242 Score: 66
Period size: 11 Copynumber: 4.8 Consensus size: 10
63584182 CACAAAAGTC
63584192 CTCTCATAATT
1 CTCTCA-AATT
63584203 CTCTCTAAATT
1 CTCTC-AAATT
63584214 CTCTCAAAATT
1 CTCTC-AAATT
63584225 CTCTCAAATT
1 CTCTCAAATT
*
63584235 TTCTCAAA
1 CTCTCAAA
63584243 GCTCTCTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
10 12 0.32
11 24 0.65
12 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.41
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:63584248 original size:21 final size:22
Alignment explanation
Indices: 63584192--63584249 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
63584182 CACAAAAGTC
* *
63584192 CTCTCATAATTCTCTCTAAATT
1 CTCTCAAAACTCTCTCTAAATT
*
63584214 CTCTCAAAATTCTCTC-AAATT
1 CTCTCAAAACTCTCTCTAAATT
* *
63584235 TTCTCAAAGCTCTCT
1 CTCTCAAAACTCTCT
63584250 TTAATTTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 17 0.53
22 15 0.47
ACGTcount: A:0.28, C:0.29, G:0.02, T:0.41
Consensus pattern (22 bp):
CTCTCAAAACTCTCTCTAAATT
Found at i:63585970 original size:29 final size:30
Alignment explanation
Indices: 63585919--63585983 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
63585909 GATGAGGATG
63585919 CGGGCCTATCAACAACGCCCACACAATCAC
1 CGGGCCTATCAACAACGCCCACACAATCAC
* * *
63585949 CGGGCC-ATCAACAGCGCTCACACAGTCAC
1 CGGGCCTATCAACAACGCCCACACAATCAC
*
63585978 TGGGCC
1 CGGGCC
63585984 CAACACTTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 25 0.81
30 6 0.19
ACGTcount: A:0.28, C:0.42, G:0.20, T:0.11
Consensus pattern (30 bp):
CGGGCCTATCAACAACGCCCACACAATCAC
Found at i:63586348 original size:22 final size:21
Alignment explanation
Indices: 63586325--63586369 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
63586315 CAACCAGATC
63586325 CCCTACCGGAGGAACCACAAT
1 CCCTACCGGAGGAACCACAAT
*
63586346 CCCTACCGGAGTAACCACAA-
1 CCCTACCGGAGGAACCACAAT
63586366 CCCT
1 CCCT
63586370 CGCTGGAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.31, C:0.42, G:0.16, T:0.11
Consensus pattern (21 bp):
CCCTACCGGAGGAACCACAAT
Found at i:63589493 original size:126 final size:126
Alignment explanation
Indices: 63589267--63589587 Score: 419
Period size: 126 Copynumber: 2.5 Consensus size: 126
63589257 CCAAATAGGA
* * * *
63589267 ACTACTGTAGCAAAAGAGTATCCACGTGGGAA-CTTTTTTCAATAATTTTGCTGACGGTGCATCC
1 ACTACTGTAGCAAAAGAGCATCCACGT-GGAAGCTTTTTTCAGTAATTTTGTTGACAGTGCATCC
* * * * *
63589331 TAATTGACGTGTTTTGGATACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAAAT
65 TAATTGAAGCGTTTTGGATACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTCCAAAT
* * *
63589393 ACTACTGTAGCAAAATAGCATCCACGTGGAAGTTTTTTTCAGTAATTTTGTTGACAGTGCATCTT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGTTGACAGTGCATCCT
** * * *
63589458 GCTTGAAGCGTTTTTGATACTATTTGTTCAAAAACGTTTTCTCAAAATTATTTTTCCAGAT
66 AATTGAAGCGTTTTGGATACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTCCAAAT
* * * ** *
63589519 ACTACTGTAACAAAAGAGCGTCTACACGGAAGCTTTTTTCAGTAATTTTGTTGACAGTGTATCCT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGTTGACAGTGCATCCT
63589584 AATT
66 AATT
63589588 TAATTAATTA
Statistics
Matches: 166, Mismatches: 28, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
125 4 0.02
126 162 0.98
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.39
Consensus pattern (126 bp):
ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGTTGACAGTGCATCCT
AATTGAAGCGTTTTGGATACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTCCAAAT
Found at i:63594506 original size:17 final size:17
Alignment explanation
Indices: 63594484--63594520 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
63594474 AATGTTATAC
63594484 TAAGATTTTTATATTTG
1 TAAGATTTTTATATTTG
63594501 TAAGATTTTTATATTTG
1 TAAGATTTTTATATTTG
63594518 TAA
1 TAA
63594521 ATTATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (17 bp):
TAAGATTTTTATATTTG
Found at i:63596611 original size:16 final size:18
Alignment explanation
Indices: 63596592--63596624 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
63596582 TAATAAAAAA
63596592 ATAATT-TTATT-TTAAC
1 ATAATTATTATTATTAAC
63596608 ATAATTATTATTATTAA
1 ATAATTATTATTATTAA
63596625 ATTCAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (18 bp):
ATAATTATTATTATTAAC
Found at i:63605473 original size:61 final size:58
Alignment explanation
Indices: 63605392--63605519 Score: 220
Period size: 61 Copynumber: 2.2 Consensus size: 58
63605382 AAGTATTAAC
*
63605392 TATTTATAAAATTTAAATATAAATAAGATATTAACACATTTGGATTATTTAAAATTTTTT
1 TATTTTTAAAATTTAAATATAAATAAGATATTAACACATTTGGATTATTT--AATTTTTT
63605452 TATTTTTAAACATTTAAATATAAATAAGATATTAACACATTTGGATTATTTAATTTTTT
1 TATTTTTAAA-ATTTAAATATAAATAAGATATTAACACATTTGGATTATTTAATTTTTT
63605511 TATTTTTAA
1 TATTTTTAA
63605520 TTAATAATTT
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
59 17 0.26
60 9 0.14
61 40 0.61
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (58 bp):
TATTTTTAAAATTTAAATATAAATAAGATATTAACACATTTGGATTATTTAATTTTTT
Found at i:63611142 original size:12 final size:11
Alignment explanation
Indices: 63611105--63611142 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
63611095 CGTGTGGACC
63611105 TTTTTTTTAAT
1 TTTTTTTTAAT
63611116 TTCTTTTTTAA-
1 TT-TTTTTTAAT
*
63611127 TTTTCTTTAAT
1 TTTTTTTTAAT
63611138 TTTTT
1 TTTTT
63611143 AAAAAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 7 0.30
11 8 0.35
12 8 0.35
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTTTTAAT
Found at i:63614057 original size:14 final size:13
Alignment explanation
Indices: 63614033--63614072 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
63614023 AGAATTAAAC
63614033 AAATGAAAAATTA
1 AAATGAAAAATTA
63614046 AAATGTAAAAATTA
1 AAATG-AAAAATTA
* *
63614060 AATTAAAAAATTA
1 AAATGAAAAATTA
63614073 TTAAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (13 bp):
AAATGAAAAATTA
Found at i:63615860 original size:21 final size:21
Alignment explanation
Indices: 63615831--63615871 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63615821 TAAATTATAG
63615831 AAAAAGTATCAATACCTTTTC
1 AAAAAGTATCAATACCTTTTC
* *
63615852 AAAATGTATCAATATCTTTT
1 AAAAAGTATCAATACCTTTT
63615872 ACCAAGTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (21 bp):
AAAAAGTATCAATACCTTTTC
Found at i:63617431 original size:30 final size:30
Alignment explanation
Indices: 63617397--63617457 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
63617387 ATAGATAATT
*
63617397 TTACAGAATTAGTGATTAAGGTAAAAGGAC
1 TTACAGAATTAGTGATTAAGGCAAAAGGAC
63617427 TTACAGAATTAGTGATTAAGGCAAAAGGAC
1 TTACAGAATTAGTGATTAAGGCAAAAGGAC
63617457 T
1 T
63617458 AAATCATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.08, G:0.23, T:0.26
Consensus pattern (30 bp):
TTACAGAATTAGTGATTAAGGCAAAAGGAC
Found at i:63620358 original size:9 final size:9
Alignment explanation
Indices: 63620344--63620368 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
63620334 GCAACTGTGC
63620344 TTTAACTCT
1 TTTAACTCT
63620353 TTTAACTCT
1 TTTAACTCT
63620362 TTTAACT
1 TTTAACT
63620369 TAGTTGGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTAACTCT
Found at i:63623332 original size:286 final size:286
Alignment explanation
Indices: 63622796--63623368 Score: 844
Period size: 286 Copynumber: 2.0 Consensus size: 286
63622786 CGTGTCCTTG
* * * * *
63622796 GCCCGTGTCCCCCACACGGCCTAGACATGCCTATGTGGTCGATCATGTCTAAAAACCCAGACAGT
1 GCCCATGTCCCCCACACGGCCTAGACACGCCCATGTGGTCGATCATGTCCAAAAACCCAAACAGT
*
63622861 CTGTTTATGACATCATCACTCATTTTGAGGCACACGACTAAGGCACACGCCCGTGTGCTAGGCCG
66 CTGTTTATGACATCATCACTCATTTTGAGGCACACGACCAAGGCACACGCCCGTGTGCTAGGCCG
* * *
63622926 TGTCCTCCACACGGTTAAGACACACGACCGTGTCTCTGCCCGTGTGTTTACTACCACACAAACTG
131 TGTCCCCCACACGGTTAAGACACACGACCATGTCTCTACCCGTGTGTTTACTACCACACAAACTG
* *
63622991 ACCTAAAATTTTAAATGCAAGGGACACACGGCCAGGCAACACGCGCATAGGGGCTGACTGTGTGT
196 ACCTAAAATTTTAAATGCAAGGGACACACGGCCAGGCAACACGCGCATAGGGGCTGACCGTGCGT
63623056 CACACACGGCCTAGACACATGCCCGT
261 CACACACGGCCTAGACACATGCCCGT
* * * * * *
63623082 GCCCATGTCCCTCACATGGCCTAGACACGCCCGTGTGGTCG-CCTATGTCCAAAAACTCAAACAT
1 GCCCATGTCCCCCACACGGCCTAGACACGCCCATGTGGTCGATC-ATGTCCAAAAACCCAAACAG
* * * * *
63623146 TTTGTTTATGACGTCATCACTCATTTTGAGGCACACGGCCAAGGCATACGCCCGTGTGCTAGGCT
65 TCTGTTTATGACATCATCACTCATTTTGAGGCACACGACCAAGGCACACGCCCGTGTGCTAGGCC
* * **
63623211 GTGTCCCCCACACGGTTAAGACACACGGCCATGTCTCTACCCGTGTGTTTACTACTATGCAAACT
130 GTGTCCCCCACACGGTTAAGACACACGACCATGTCTCTACCCGTGTGTTTACTACCACACAAACT
* * * *
63623276 GACCTAAAATTTTTAGTGCAGGGGACACACGGCCAGGCAACACGC-CTATGGGGGCTGACCGTGC
195 GACCTAAAATTTTAAATGCAAGGGACACACGGCCAGGCAACACGCGC-ATAGGGGCTGACCGTGC
63623340 GTCACACACGGCCTAGACACATGCCCGT
259 GTCACACACGGCCTAGACACATGCCCGT
63623368 G
1 G
63623369 TGTCTACCCT
Statistics
Matches: 255, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
285 2 0.01
286 253 0.99
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.22
Consensus pattern (286 bp):
GCCCATGTCCCCCACACGGCCTAGACACGCCCATGTGGTCGATCATGTCCAAAAACCCAAACAGT
CTGTTTATGACATCATCACTCATTTTGAGGCACACGACCAAGGCACACGCCCGTGTGCTAGGCCG
TGTCCCCCACACGGTTAAGACACACGACCATGTCTCTACCCGTGTGTTTACTACCACACAAACTG
ACCTAAAATTTTAAATGCAAGGGACACACGGCCAGGCAACACGCGCATAGGGGCTGACCGTGCGT
CACACACGGCCTAGACACATGCCCGT
Found at i:63627242 original size:34 final size:35
Alignment explanation
Indices: 63627197--63627265 Score: 104
Period size: 34 Copynumber: 2.0 Consensus size: 35
63627187 TCTCTTGGGC
**
63627197 TAGTTTCAATATTACTC-ACAAGTTACCTTGTGGT
1 TAGTTTCAATATTACTCGACAAGCAACCTTGTGGT
*
63627231 TAGTTTTAATATTACTCGACAAGCAACCTTGTGGT
1 TAGTTTCAATATTACTCGACAAGCAACCTTGTGGT
63627266 CTTTCTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
34 16 0.52
35 15 0.48
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (35 bp):
TAGTTTCAATATTACTCGACAAGCAACCTTGTGGT
Found at i:63645682 original size:2 final size:2
Alignment explanation
Indices: 63645675--63645702 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
63645665 ATGTGTTATG
63645675 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63645703 GTGCATGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63645764 original size:39 final size:39
Alignment explanation
Indices: 63645721--63645899 Score: 234
Period size: 39 Copynumber: 4.5 Consensus size: 39
63645711 TAATGGAGAA
63645721 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
63645760 TTATATCCGGGCTAAGTCCTGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
63645799 TTATATCCGGGCTAAGCCCCCAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * ** *
63645838 TTATATTCGGGCTAAAGTCCCGTAGGC-TTTATGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
63645877 TTATATCTGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
63645900 CATGCTTTGT
Statistics
Matches: 123, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 103 0.84
40 20 0.16
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:63647716 original size:50 final size:51
Alignment explanation
Indices: 63647639--63647767 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
63647629 GACCATGACA
63647639 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
63647690 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
63647740 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
63647768 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:63647781 original size:31 final size:31
Alignment explanation
Indices: 63647743--63647922 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
63647733 ACAAATGACA
*
63647743 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
63647774 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
63647805 AGTGAAAAGTGGTAG-TTCCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
63647836 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
63647867 AGTGAAAAATGGTAGCTCCAGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
63647898 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
63647923 AAGTGACAAG
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 2 0.01
31 132 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:63648149 original size:42 final size:42
Alignment explanation
Indices: 63648042--63648138 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 42
63648032 ATGTGATTCA
* *
63648042 TGTAAGACCATAGCTGGGCTATGACATCGATATATGAATATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGATG
*
63648084 TGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGATG
63648126 TGTAAGACCATAG
1 TGTAAGACCATAG
63648139 TTGAACTATG
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 1 0.02
42 50 0.98
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGATG
Found at i:63649318 original size:53 final size:55
Alignment explanation
Indices: 63649249--63649391 Score: 166
Period size: 53 Copynumber: 2.6 Consensus size: 55
63649239 TTCCTTTTTA
* * * *
63649249 AACTTACCATTACCATGTCTTGACATGGTGTTACGTGGTATCCTTGCCTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
* * * *
63649302 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
* *
63649357 AGA-TTATCAATGCCATGTCTTGACATGGTCTTACA
1 A-ACTTACCATTGCCATGTCTTGACATGGTCTTACA
63649392 CGATTTCCTT
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
53 44 0.59
54 1 0.01
55 28 0.38
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
Found at i:63650967 original size:24 final size:24
Alignment explanation
Indices: 63650922--63650968 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
63650912 TATATATACC
63650922 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
63650946 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
63650969 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:63651635 original size:19 final size:20
Alignment explanation
Indices: 63651607--63651646 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
63651597 GGTCTTTCTC
*
63651607 CTTTTCTTTCCTTTTTCTTT
1 CTTTTCTTTCCCTTTTCTTT
*
63651627 CTTTT-TTTCCCTTTTGTTT
1 CTTTTCTTTCCCTTTTCTTT
63651646 C
1 C
63651647 ATTTGTTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.00, C:0.25, G:0.03, T:0.72
Consensus pattern (20 bp):
CTTTTCTTTCCCTTTTCTTT
Found at i:63651657 original size:31 final size:31
Alignment explanation
Indices: 63651601--63651661 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
63651591 AGCTTTGGTC
*
63651601 TTTCTCCTTTTCTTTCCTTTTTCTTTCTTTT
1 TTTCTCCTTTTCTTTCATTTTTCTTTCTTTT
*
63651632 TTTC-CCTTTTGTTTCATTTGTTCTTTCTTT
1 TTTCTCCTTTTCTTTCATTT-TTCTTTCTTT
63651662 ATTTGTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.02, C:0.23, G:0.03, T:0.72
Consensus pattern (31 bp):
TTTCTCCTTTTCTTTCATTTTTCTTTCTTTT
Found at i:63652704 original size:42 final size:42
Alignment explanation
Indices: 63652635--63652717 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
63652625 CTAGGAGAAG
*
63652635 AAGTTTTGTTGAGCTGTACAAAACTTGGCTCAATAACATCAC
1 AAGTCTTGTTGAGCTGTACAAAACTTGGCTCAATAACATCAC
* *
63652677 AAGTCTTGTTGAGCTGTGCAAACCTTGGCTCAATAACATCA
1 AAGTCTTGTTGAGCTGTACAAAACTTGGCTCAATAACATCA
63652718 GGAATTGTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (42 bp):
AAGTCTTGTTGAGCTGTACAAAACTTGGCTCAATAACATCAC
Found at i:63655587 original size:50 final size:49
Alignment explanation
Indices: 63655509--63655682 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 49
63655499 GGTGTCAGTG
*
63655509 TAAGACCATGTCTGGGACATGGCATCGGCATGGATATATGAGAGCTT-GTA
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATA-GAGAG-TTAGTA
* ** * * * *
63655559 TAAGACCATGTCTGAGACATGGTGTCGGCTTCGATTTAGATAGTTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATAGAGAGTTAGTA
* * * ** *
63655608 TAAGACCATGTCTGGGACATGGCATCGAC-TTG--ATGGATGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATAGA-GAGTTAGTA
*
63655655 TAGGACCATGTCTGGGACATGGCATCGG
1 TAAGACCATGTCTGGGACATGGCATCGG
63655683 TATTACACCC
Statistics
Matches: 102, Mismatches: 20, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
46 3 0.03
47 32 0.31
48 4 0.04
49 31 0.30
50 32 0.31
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGATATAGAGAGTTAGTA
Found at i:63655627 original size:49 final size:47
Alignment explanation
Indices: 63655505--63655682 Score: 180
Period size: 49 Copynumber: 3.7 Consensus size: 47
63655495 TAGAGGTGTC
* *
63655505 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATATGAGAGCTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAT-TA-GATAG-TT
* * **
63655556 -GTATAAGACCATGTCTGAGACATGGTGTCGGCTTCGATTTAGATAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTT-GA-TTAGATAGTT
* * **
63655604 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA-TGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATTAGAT-AGTT
*
63655651 AGTGTAGGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
63655683 TATTACACCC
Statistics
Matches: 107, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
46 4 0.04
47 32 0.30
48 4 0.04
49 34 0.32
50 32 0.30
51 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATTAGATAGTT
Found at i:63658515 original size:409 final size:409
Alignment explanation
Indices: 63657756--63658575 Score: 1640
Period size: 409 Copynumber: 2.0 Consensus size: 409
63657746 GAATTCCGAA
63657756 AGAAGTACATTAGTCAGAGGTTCATCAACCGAAAGAGGAAAGAATTTCTCGAGCTAAAGCAAGGC
1 AGAAGTACATTAGTCAGAGGTTCATCAACCGAAAGAGGAAAGAATTTCTCGAGCTAAAGCAAGGC
63657821 CGAATGACAGTAACAGAGTATGAACGTGAATTTTTAAGACTCAGCAAGTACCCGAGAGTGCGTAC
66 CGAATGACAGTAACAGAGTATGAACGTGAATTTTTAAGACTCAGCAAGTACCCGAGAGTGCGTAC
63657886 CTACCGAGGCTATAATGTGTAAGAGGTTAAAGAATGGCATGAATGAAGATGTTCGAGTATTTGTC
131 CTACCGAGGCTATAATGTGTAAGAGGTTAAAGAATGGCATGAATGAAGATGTTCGAGTATTTGTC
63657951 GGCATCCTAGAGCTAAGGGAATTTGTAGTACTAGTTGAGAGAGGTTACAAAGTAGAAGAGCTGGT
196 GGCATCCTAGAGCTAAGGGAATTTGTAGTACTAGTTGAGAGAGGTTACAAAGTAGAAGAGCTGGT
63658016 TAAAGAAAAAAGAAAGGCGGCTATTGAGTCACATGATTCAAAGAAGAGATAGATTGGGTAGTCAC
261 TAAAGAAAAAAGAAAGGCGGCTATTGAGTCACATGATTCAAAGAAGAGATAGATTGGGTAGTCAC
63658081 ATCACTCCTCATCTAAGAGATCAAGGGAATTCACTACCTGATCGAATGCTTCAGGGGGATTCTCA
326 ATCACTCCTCATCTAAGAGATCAAGGGAATTCACTACCTGATCGAATGCTTCAGGGGGATTCTCA
63658146 AGTAAAAACAAGAACAAGC
391 AGTAAAAACAAGAACAAGC
63658165 AGAAGTACATTAGTCAGAGGTTCATCAACCGAAAGAGGAAAGAATTTCTCGAGCTAAAGCAAGGC
1 AGAAGTACATTAGTCAGAGGTTCATCAACCGAAAGAGGAAAGAATTTCTCGAGCTAAAGCAAGGC
63658230 CGAATGACAGTAACAGAGTATGAACGTGAATTTTTAAGACTCAGCAAGTACCCGAGAGTGCGTAC
66 CGAATGACAGTAACAGAGTATGAACGTGAATTTTTAAGACTCAGCAAGTACCCGAGAGTGCGTAC
63658295 CTACCGAGGCTATAATGTGTAAGAGGTTAAAGAATGGCATGAATGAAGATGTTCGAGTATTTGTC
131 CTACCGAGGCTATAATGTGTAAGAGGTTAAAGAATGGCATGAATGAAGATGTTCGAGTATTTGTC
63658360 GGCATCCTAGAGCTAAGGGAATTTGTAGTACTAGTTGAGAGAGGTTACAAAGTAGAAGAGCTGGT
196 GGCATCCTAGAGCTAAGGGAATTTGTAGTACTAGTTGAGAGAGGTTACAAAGTAGAAGAGCTGGT
63658425 TAAAGAAAAAAGAAAGGCGGCTATTGAGTCACATGATTCAAAGAAGAGATAGATTGGGTAGTCAC
261 TAAAGAAAAAAGAAAGGCGGCTATTGAGTCACATGATTCAAAGAAGAGATAGATTGGGTAGTCAC
63658490 ATCACTCCTCATCTAAGAGATCAAGGGAATTCACTACCTGATCGAATGCTTCAGGGGGATTCTCA
326 ATCACTCCTCATCTAAGAGATCAAGGGAATTCACTACCTGATCGAATGCTTCAGGGGGATTCTCA
63658555 AGTAAAAACAAGAACAAGC
391 AGTAAAAACAAGAACAAGC
63658574 AG
1 AG
63658576 TACATGGCAT
Statistics
Matches: 411, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
409 411 1.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.22
Consensus pattern (409 bp):
AGAAGTACATTAGTCAGAGGTTCATCAACCGAAAGAGGAAAGAATTTCTCGAGCTAAAGCAAGGC
CGAATGACAGTAACAGAGTATGAACGTGAATTTTTAAGACTCAGCAAGTACCCGAGAGTGCGTAC
CTACCGAGGCTATAATGTGTAAGAGGTTAAAGAATGGCATGAATGAAGATGTTCGAGTATTTGTC
GGCATCCTAGAGCTAAGGGAATTTGTAGTACTAGTTGAGAGAGGTTACAAAGTAGAAGAGCTGGT
TAAAGAAAAAAGAAAGGCGGCTATTGAGTCACATGATTCAAAGAAGAGATAGATTGGGTAGTCAC
ATCACTCCTCATCTAAGAGATCAAGGGAATTCACTACCTGATCGAATGCTTCAGGGGGATTCTCA
AGTAAAAACAAGAACAAGC
Found at i:63664465 original size:9 final size:9
Alignment explanation
Indices: 63664448--63664484 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
63664438 TGAGCTTTCA
63664448 AATTCGAAT
1 AATTCGAAT
*
63664457 AACTCGAAT
1 AATTCGAAT
63664466 AATTCGAAT
1 AATTCGAAT
63664475 AATTCGAAT
1 AATTCGAAT
63664484 A
1 A
63664485 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:63664992 original size:19 final size:17
Alignment explanation
Indices: 63664969--63665049 Score: 51
Period size: 17 Copynumber: 4.6 Consensus size: 17
63664959 TTATATCTAC
63664969 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
* *
63664986 TAAATTTAACATT-TTATAT
1 T--ATTT-ATATTATTAAAT
*
63665005 TATTTATATTATTTAAT
1 TATTTATATTATTAAAT
* *
63665022 TTTTTAGTCA-TATTGAA-
1 TATTTA-T-ATTATTAAAT
63665039 TATTTATATTA
1 TATTTATATTA
63665050 AAATTGAATT
Statistics
Matches: 49, Mismatches: 8, Indels: 15
0.68 0.11 0.21
Matches are distributed among these distances:
15 1 0.02
16 7 0.14
17 19 0.39
18 7 0.14
19 11 0.22
20 4 0.08
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (17 bp):
TATTTATATTATTAAAT
Found at i:63665316 original size:19 final size:19
Alignment explanation
Indices: 63665292--63665329 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
63665282 AAGTTAATAA
*
63665292 AAAATTTGATTATGTTGGG
1 AAAATTTGATTATGGTGGG
*
63665311 AAAATTTTATTATGGTGGG
1 AAAATTTGATTATGGTGGG
63665330 TGACAGTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.42
Consensus pattern (19 bp):
AAAATTTGATTATGGTGGG
Found at i:63665515 original size:5 final size:5
Alignment explanation
Indices: 63665505--63665541 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
63665495 AAATTTTTTC
*
63665505 ATTCG ATTCG ATTCG ATTCG ATTCA ATTCG ATTCG AT
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG AT
63665542 CGAACGCTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (5 bp):
ATTCG
Found at i:63666475 original size:21 final size:20
Alignment explanation
Indices: 63666451--63666490 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
63666441 ATGTTCAAGT
*
63666451 TCCACATGGGCGTGTTGCCCA
1 TCCACAAGGGCGTG-TGCCCA
63666472 TCCACAAGGGCGTGTGCCC
1 TCCACAAGGGCGTGTGCCC
63666491 TGTTTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.15, C:0.35, G:0.30, T:0.20
Consensus pattern (20 bp):
TCCACAAGGGCGTGTGCCCA
Found at i:63680245 original size:38 final size:39
Alignment explanation
Indices: 63680193--63680335 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
63680183 GAATGTTCGA
63680193 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
63680232 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63680270 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63680309 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
63680336 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:63680281 original size:77 final size:79
Alignment explanation
Indices: 63680194--63680375 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
63680184 AATGTTCGAG
63680194 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
63680257 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
63680271 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
63680336 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
63680350 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
63680376 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:63686350 original size:38 final size:39
Alignment explanation
Indices: 63686298--63686440 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
63686288 GAATGTTCGA
63686298 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
63686337 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63686375 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63686414 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
63686441 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:63686386 original size:77 final size:79
Alignment explanation
Indices: 63686299--63686480 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
63686289 AATGTTCGAG
63686299 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
63686362 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
63686376 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
63686441 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
63686455 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
63686481 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:63692450 original size:39 final size:39
Alignment explanation
Indices: 63692396--63692539 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
63692386 GAATGTTCGA
63692396 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
63692435 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63692474 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63692513 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
63692540 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:63692486 original size:78 final size:79
Alignment explanation
Indices: 63692397--63692579 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
63692387 AATGTTCGAG
63692397 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
63692461 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
63692475 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
63692540 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
63692554 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
63692580 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:63695048 original size:3 final size:3
Alignment explanation
Indices: 63695035--63695080 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
63695025 CTTATTTAGT
63695035 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
63695081 TATTTTTACT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:63695093 original size:7 final size:6
Alignment explanation
Indices: 63695043--63695115 Score: 65
Period size: 6 Copynumber: 11.8 Consensus size: 6
63695033 GTTTATTTTA
* * * * * *
63695043 TTATTA TTATTA TTATTA TTATTA TTATTA TTATTAT TTATTT TTACTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATT-T TTATTT TTATTT
*
63695092 TTATTT TTAATTT TTAATT TTATT
1 TTATTT TT-ATTT TTATTT TTATT
63695116 CTTCTTCCTT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
6 49 0.82
7 11 0.18
ACGTcount: A:0.27, C:0.01, G:0.00, T:0.71
Consensus pattern (6 bp):
TTATTT
Found at i:63695095 original size:19 final size:18
Alignment explanation
Indices: 63695034--63695115 Score: 75
Period size: 19 Copynumber: 4.6 Consensus size: 18
63695024 ACTTATTTAG
63695034 TTTATTTTATTA-TTATT
1 TTTATTTTATTATTTATT
*
63695051 ATTA--TTATTA-TTATT
1 TTTATTTTATTATTTATT
*
63695066 ATTATTATTATTATTTATT
1 TTTATT-TTATTATTTATT
63695085 TTTACTTTTATT-TTTAATT
1 TTTA-TTTTATTATTT-ATT
63695104 TTTAATTTTATT
1 TTT-ATTTTATT
63695116 CTTCTTCCTT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
15 15 0.27
17 3 0.05
18 9 0.16
19 26 0.46
20 3 0.05
ACGTcount: A:0.27, C:0.01, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTATTATTTATT
Found at i:63701897 original size:39 final size:39
Alignment explanation
Indices: 63701813--63701967 Score: 220
Period size: 39 Copynumber: 3.9 Consensus size: 39
63701803 GTTATAGTAG
* * * *
63701813 CTCGCATAAATGCCTTCGGGACTTAACACGGATATCACAA
1 CTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
*
63701853 TTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
* * *
63701892 CTCGCACAATTGCCTTTGGGCTTAGCTCAGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
*
63701931 CTCGCACAATTGCTTTCGGGCTTAGCCCGGATATCAC
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
63701968 CCGAACATTC
Statistics
Matches: 102, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 85 0.83
40 17 0.17
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (39 bp):
CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
Found at i:63709766 original size:39 final size:39
Alignment explanation
Indices: 63709682--63709797 Score: 187
Period size: 39 Copynumber: 2.9 Consensus size: 39
63709672 GTTATAGTAG
* * *
63709682 CTCGCATAAATGCCTTCGGGACTTAACCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
*
63709722 TTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
63709761 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
63709798 CCGAACATTC
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
39 54 0.76
40 17 0.24
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
Found at i:63711618 original size:89 final size:89
Alignment explanation
Indices: 63711464--63711659 Score: 338
Period size: 89 Copynumber: 2.2 Consensus size: 89
63711454 CTGTCACAAC
*
63711464 GTCTGTACCGCGGTCTTCCACATTGCACAGTACAACTTATACGCTAGCCTTACTGCATAATATAT
1 GTCTGTACCGCGGTCTTCCACATTGCACAGTACAACTTATACGCTAGCCTTACTGCATAAAATAT
*
63711529 CTAATCTGGCAGTTCATACTGCAT
66 CTAATCTGGCAGTTCATACTACAT
* * *
63711553 GTCTGTACCGTGGTCTTCCACATTGCACAGTACAACTTATACGCTAGCCTTGCTGCGTAAAATAT
1 GTCTGTACCGCGGTCTTCCACATTGCACAGTACAACTTATACGCTAGCCTTACTGCATAAAATAT
*
63711618 CTGATCTGGCAGTTCATACTACAT
66 CTAATCTGGCAGTTCATACTACAT
63711642 GTCTGTACCGCGGTCTTC
1 GTCTGTACCGCGGTCTTC
63711660 TGCATGGCAC
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 100 1.00
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (89 bp):
GTCTGTACCGCGGTCTTCCACATTGCACAGTACAACTTATACGCTAGCCTTACTGCATAAAATAT
CTAATCTGGCAGTTCATACTACAT
Found at i:63713725 original size:7 final size:7
Alignment explanation
Indices: 63713713--63713776 Score: 52
Period size: 6 Copynumber: 10.0 Consensus size: 7
63713703 CTTATTTAGT
*
63713713 TTATTTG
1 TTATTTA
63713720 TTATTTA
1 TTATTTA
63713727 TTA-TTA
1 TTATTTA
63713733 TTA-TTA
1 TTATTTA
63713739 TTATTTA
1 TTATTTA
63713746 TT-TTTA
1 TTATTTA
*
63713752 CT-TTTA
1 TTATTTA
63713758 TT-TTTAA
1 TTATTT-A
63713765 TT-TTTA
1 TTATTTA
63713771 TT-TTTA
1 TTATTTA
63713777 GTCTTCTTCC
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
6 32 0.62
7 20 0.38
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (7 bp):
TTATTTA
Found at i:63713751 original size:6 final size:6
Alignment explanation
Indices: 63713723--63713776 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
63713713 TTATTTGTTA
* * *
63713723 TTTATT ATTATT ATTATT ATTTATT TTTACT TTTATT TTTAATT TTTATT
1 TTTATT TTTATT TTTATT -TTTATT TTTATT TTTATT TTT-ATT TTTATT
63713773 TTTA
1 TTTA
63713777 GTCTTCTTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
6 31 0.74
7 11 0.26
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:63713758 original size:19 final size:18
Alignment explanation
Indices: 63713720--63713774 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
63713710 AGTTTATTTG
*
63713720 TTATTTATTATTATTATTA
1 TTATTTATTTTTATT-TTA
63713739 TTATTTATTTTTACTTTTA
1 TTATTTATTTTTA-TTTTA
63713758 TT-TTTAATTTTTATTTT
1 TTATTT-ATTTTTATTTT
63713775 TAGTCTTCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
18 7 0.21
19 24 0.73
20 2 0.06
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (18 bp):
TTATTTATTTTTATTTTA
Found at i:63713762 original size:13 final size:13
Alignment explanation
Indices: 63713742--63713776 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
63713732 ATTATTATTA
63713742 TTTATTTTT-ACT
1 TTTATTTTTAACT
*
63713754 TTTATTTTTAATT
1 TTTATTTTTAACT
63713767 TTTATTTTTA
1 TTTATTTTTA
63713777 GTCTTCTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTATTTTTAACT
Found at i:63715249 original size:89 final size:88
Alignment explanation
Indices: 63715125--63715449 Score: 348
Period size: 89 Copynumber: 3.6 Consensus size: 88
63715115 ACATTAGGTA
* * * * * *
63715125 TGCTACGTACCAT-TATCTGATCTGGCAATTTATACTGCACGTCTGTACCCCGAT-TTACCGTAT
1 TGCTACGTA--ATATATCTGATCTGGCAGTTCATACTGCATGTCTATACCGCGATCTT-CAG-AT
* *
63715188 TGCACAATACAGCTTATACGCTAGCCT
62 TGTACAGTACAGCTTATACGCTAGCCT
* * * *
63715215 TGCTACGTAATATATCTAATCTGGTAGTTCATACTGCATTTCTATACCGCAATCTTTCAGATTGT
1 TGCTACGTAATATATCTGATCTGGCAGTTCATACTGCATGTCTATACCGCGATC-TTCAGATTGT
* *
63715280 ATAGTATAGCTTATACGCTAGCCT
65 ACAGTACAGCTTATACGCTAGCCT
* * * **
63715304 TGCTGCGTAATATATCTGATCTGGCAGTTCATACTACATGTCTATACCGCGGTCTTTGGCATTGT
1 TGCTACGTAATATATCTGATCTGGCAGTTCATACTGCATGTCTATACCGCGATCTTCAG-ATTGT
*
63715369 ACAGTACAACTTATACGCTAGCCT
65 ACAGTACAGCTTATACGCTAGCCT
* * * * * *
63715393 TGCTGCGTAATATATCTGATCTAGCAGTTTATACTGGATGTTTGTACCGCGATCTTC
1 TGCTACGTAATATATCTGATCTGGCAGTTCATACTGCATGTCTATACCGCGATCTTC
63715450 CACATGCCAC
Statistics
Matches: 197, Mismatches: 34, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
88 5 0.03
89 179 0.91
90 11 0.06
91 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.35
Consensus pattern (88 bp):
TGCTACGTAATATATCTGATCTGGCAGTTCATACTGCATGTCTATACCGCGATCTTCAGATTGTA
CAGTACAGCTTATACGCTAGCCT
Found at i:63718567 original size:45 final size:45
Alignment explanation
Indices: 63718501--63718721 Score: 356
Period size: 45 Copynumber: 5.0 Consensus size: 45
63718491 TTTTATCAAA
*
63718501 TCACCGGCATT-CAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* ** * *
63718545 TCACCAGCATTATAGCCTGCTAGGCT-TGAGGCCCAAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
63718589 TCACCGGCATTATAGTCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
63718634 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
63718679 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
63718722 CTGTACAATA
Statistics
Matches: 160, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
44 48 0.30
45 112 0.70
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:63718651 original size:89 final size:90
Alignment explanation
Indices: 63718501--63718721 Score: 356
Period size: 89 Copynumber: 2.5 Consensus size: 90
63718491 TTTTATCAAA
*
63718501 TCACCGGCATT-CAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAGCCTGC
** * *
63718565 TAGGCT-TGAGGCCCAAATAGTGTC
66 TAGGCTCAAAGGCCCAAATAATATC
* *
63718589 TCACCGGCATTATAGTCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAGCCTGC
*
63718654 TAGGCTCAAAGGCCCGAATAATATC
66 TAGGCTCAAAGGCCCAAATAATATC
63718679 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
63718722 CTGTACAATA
Statistics
Matches: 122, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
88 11 0.09
89 56 0.46
90 55 0.45
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (90 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAGCCTGC
TAGGCTCAAAGGCCCAAATAATATC
Found at i:63728011 original size:56 final size:56
Alignment explanation
Indices: 63727945--63728057 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
63727935 ATAATTCAAC
63727945 AATATCCTTAAAGCAATTAGACCACCATTGAATTTACCCATCAATTTCCACTCCTA
1 AATATCCTTAAAGCAATTAGACCACCATTGAATTTACCCATCAATTTCCACTCCTA
63728001 AATATCCTTAAAGCAATTAGACCACCATTGAATTTACCCATCAATTTCCACTCCTA
1 AATATCCTTAAAGCAATTAGACCACCATTGAATTTACCCATCAATTTCCACTCCTA
63728057 A
1 A
63728058 TTGCTTTAGT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.36, C:0.28, G:0.05, T:0.30
Consensus pattern (56 bp):
AATATCCTTAAAGCAATTAGACCACCATTGAATTTACCCATCAATTTCCACTCCTA
Found at i:63732424 original size:7 final size:7
Alignment explanation
Indices: 63732409--63732440 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
63732399 GATGGGTAAG
63732409 GGGTCTTA
1 GGGT-TTA
63732417 GGGTTTA
1 GGGTTTA
63732424 GGGTTTA
1 GGGTTTA
63732431 GGGTTTA
1 GGGTTTA
63732438 GGG
1 GGG
63732441 CAGTGTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.12, C:0.03, G:0.47, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:63734793 original size:6 final size:6
Alignment explanation
Indices: 63734778--63734821 Score: 63
Period size: 6 Copynumber: 7.3 Consensus size: 6
63734768 GGAATACACC
*
63734778 GTAACG GTAACA GTAAC- GATAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA G-TAACA GTAACA GTAACA GTAACA GT
63734822 CAGGTACAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
5 1 0.03
6 33 0.94
7 1 0.03
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:63735920 original size:2 final size:2
Alignment explanation
Indices: 63735915--63735948 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
63735905 TATTTCCTTT
63735915 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
63735949 ATAACTTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:63750821 original size:25 final size:25
Alignment explanation
Indices: 63750793--63750871 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
63750783 ACTCGGCCCT
*
63750793 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
63750818 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
63750840 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
63750865 ATCACAT
1 ATCACAT
63750872 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:63750966 original size:49 final size:47
Alignment explanation
Indices: 63750743--63751203 Score: 697
Period size: 47 Copynumber: 9.6 Consensus size: 47
63750733 CCCTTCGGGA
* * * * * * *
63750743 CTTATCACATTTCTACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63750790 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63750837 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63750884 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63750931 CTTATCACATAAATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63750980 CTTATCACATATATATACACTTTCACATTCATCACTTTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63751029 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63751076 CTTATCACATATATATACACTTTCACATTCATCACTTTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63751125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63751172 CTTATCTCATATTTATACACATTCACATTCAT
1 CTTATCACATA--TATACACTTTCACATTCAT
63751204 TGCGTAAAAT
Statistics
Matches: 385, Mismatches: 21, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
47 232 0.60
49 151 0.39
51 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63750975 original size:96 final size:94
Alignment explanation
Indices: 63750743--63751203 Score: 715
Period size: 96 Copynumber: 4.8 Consensus size: 94
63750733 CCCTTCGGGA
* * * * * * * *
63750743 CTTATCACATTTCTACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
63750808 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATTGGCCATTAGGC
*
63750837 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
63750902 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATTGGCCATTAGGC
63750931 CTTATCACATAAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
63750996 ACACTTTCACATTCATCACTTTGGCCATTAGGC
62 ACACTTTCACATTCATCACATTGGCCATTAGGC
63751029 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
63751094 ACTTTCACATTCATCACTTTGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
*
63751125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATTTATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA--TATAC
*
63751190 ACATTCACATTCAT
64 ACTTTCACATTCAT
63751204 TGCGTAAAAT
Statistics
Matches: 345, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
94 96 0.28
96 202 0.59
98 47 0.14
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTAGGC
Found at i:63758793 original size:29 final size:29
Alignment explanation
Indices: 63758759--63758919 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
63758749 TACTCGATTT
** * *
63758759 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
63758788 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
63758817 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
63758846 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63758875 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63758904 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63758920 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63761665 original size:80 final size:80
Alignment explanation
Indices: 63761581--63761729 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63761571 TATGGTAACC
* * * *
63761581 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63761645 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63761661 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63761726 CCGG
66 CCGG
63761730 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63761671 original size:40 final size:38
Alignment explanation
Indices: 63761622--63761729 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63761612 ATCACGATTT
*
63761622 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63761662 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63761702 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63761730 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63763482 original size:80 final size:80
Alignment explanation
Indices: 63763398--63763546 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63763388 TATGGTAACC
* * * *
63763398 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63763462 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63763478 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63763543 CCGG
66 CCGG
63763547 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63763488 original size:40 final size:38
Alignment explanation
Indices: 63763439--63763546 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63763429 ATCACGATTT
*
63763439 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63763479 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63763519 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63763547 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63770110 original size:22 final size:22
Alignment explanation
Indices: 63770085--63770127 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
63770075 AAACATGTTT
63770085 AAAACAT-CAACCTTTCCACATC
1 AAAACATGCAA-CTTTCCACATC
* *
63770107 AAAATATGCAAGTTTCCACAT
1 AAAACATGCAACTTTCCACAT
63770128 TCACAAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.42, C:0.28, G:0.05, T:0.26
Consensus pattern (22 bp):
AAAACATGCAACTTTCCACATC
Found at i:63770845 original size:42 final size:42
Alignment explanation
Indices: 63770695--63770888 Score: 235
Period size: 43 Copynumber: 4.6 Consensus size: 42
63770685 ATGCCAATGT
* * *
63770695 CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* * * * * *
63770737 CAATACCCCAGCTATGGTCTTACATGTAATCTCGTATCAATGC
1 C-ATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* * *
63770780 CAATACCCCAGCTATGGTCTTACACGAAATCTCACATCGATGC
1 C-ATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* * *
63770823 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGT
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
63770865 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
63770889 ATAGTCTCAG
Statistics
Matches: 137, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
42 60 0.44
43 77 0.56
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
Found at i:63776403 original size:10 final size:10
Alignment explanation
Indices: 63776383--63776418 Score: 58
Period size: 9 Copynumber: 3.8 Consensus size: 10
63776373 CTATCCCTAT
63776383 AAAAT-ATTA
1 AAAATAATTA
63776392 AAAATAATTA
1 AAAATAATTA
63776402 AAAATAA-TA
1 AAAATAATTA
63776411 AAAATAAT
1 AAAATAAT
63776419 AGTATAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 14 0.56
10 11 0.44
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AAAATAATTA
Found at i:63778615 original size:40 final size:40
Alignment explanation
Indices: 63778545--63778841 Score: 422
Period size: 40 Copynumber: 7.5 Consensus size: 40
63778535 AAACCAAGTA
*
63778545 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCTCAAATG
* *
63778584 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* *
63778624 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* *
63778664 CCTTTGGGACTTAGCCCGGATATGGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
*
63778704 CCTTCGGGACTTAG-CCGGATATAGTAACTCCCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
63778743 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* * * *
63778783 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCTCAAATG
* *
63778823 CCTTCAGGACCTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63778842 TTATCATTCG
Statistics
Matches: 235, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 52 0.22
40 183 0.78
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
Found at i:63778826 original size:119 final size:119
Alignment explanation
Indices: 63778545--63778838 Score: 414
Period size: 119 Copynumber: 2.5 Consensus size: 119
63778535 AAACCAAGTA
*
63778545 CCTTCGGGATTTAG-CCGGATATAG-CTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTCGCTCAAATGCCTTCGGGACTTAG-CCGGATATA
*
63778608 GTAACTCGCACAAATACCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
64 GTAACTCCCACAAATACCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
* * *
63778664 CCTTTGGGACTTAGCCCGGATATGGTAACTCGCTCAAATGCCTTCGGGACTTAGCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTCGCTCAAATGCCTTCGGGACTTAGCCGGATATAGT
* * * *
63778729 AACTCCCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
66 AACTCCCACAAATACCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
63778783 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAAGGCCTTCAGGACCTAGCC
1 CCTTCGGGACTTAGCCCGGATA-TAGTCACTCGCTCAAATGCCTTCGGGACTTAGCC
63778839 CGGTTATCAT
Statistics
Matches: 155, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
118 1 0.01
119 118 0.76
120 36 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTCGCTCAAATGCCTTCGGGACTTAGCCGGATATAGT
AACTCCCACAAATACCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63778838 original size:159 final size:159
Alignment explanation
Indices: 63778545--63778841 Score: 463
Period size: 159 Copynumber: 1.9 Consensus size: 159
63778535 AAACCAAGTA
* *
63778545 CCTTCGGGATTTAGCCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCTACTCCCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
* * ** *
63778610 AACTCGCACAAATACCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACT
66 AACTCGCACAAATACCTTCGGGACCTAGCCCGGATATAGTAACTAGCACAAAGGCCTTCAGGACC
63778675 TAGCCCGGATATGGTAACTCGCTCAAATG
131 TAGCCCGGATATGGTAACTCGCTCAAATG
63778704 CCTTCGGGACTTAGCCGGATATAG-TAACTCCCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCGGATATAGCT-ACTCCCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
* * * *
63778768 TAACTCGCTCAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAAGGCCTTCAGGA
65 TAACTCGCACAAATACCTTCGGGACCTAGCCCGGATA-TAGTAACTAGCACAAAGGCCTTCAGGA
63778832 CCTAGCCCGG
129 CCTAGCCCGG
63778842 TTATCATTCG
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
158 2 0.02
159 123 0.98
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (159 bp):
CCTTCGGGACTTAGCCGGATATAGCTACTCCCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATACCTTCGGGACCTAGCCCGGATATAGTAACTAGCACAAAGGCCTTCAGGACC
TAGCCCGGATATGGTAACTCGCTCAAATG
Found at i:63784667 original size:40 final size:40
Alignment explanation
Indices: 63784608--63784790 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
63784598 TACTCGCTTG
* * * * * *
63784608 AATGCCTCCAGGACATAGCCCAGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
**
63784648 AATAACTTCGGGACTTAGCCCGGATATAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
*
63784688 ATTGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
* *
63784728 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCACACA
63784768 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
63784791 TTATCATCCA
Statistics
Matches: 128, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 127 0.99
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
Found at i:63790109 original size:40 final size:40
Alignment explanation
Indices: 63790039--63790335 Score: 467
Period size: 40 Copynumber: 7.5 Consensus size: 40
63790029 AAACCAAGTA
*
63790039 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCTCAAATG
*
63790078 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* *
63790118 CCTTCGGGACCTAGCCCGGATATAGTAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
63790157 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
63790197 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
63790237 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* * * *
63790277 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCTCAAATG
*
63790317 CCTTCGGGACCTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63790336 TTATCATTCG
Statistics
Matches: 244, Mismatches: 10, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
39 53 0.22
40 191 0.78
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
Found at i:63790264 original size:119 final size:119
Alignment explanation
Indices: 63790039--63790335 Score: 465
Period size: 119 Copynumber: 2.5 Consensus size: 119
63790029 AAACCAAGTA
*
63790039 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
63790103 TAACTCGCACAAATGCCTTCGGGACCTAGCCCGGATATAGTAACT-GCACAAATG
65 TAACTCGCACAAATGCCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
63790157 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
* * *
63790222 TAACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
65 TAACTCGCACAAATGCCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
63790277 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAAGGCCTTCGGGACCTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG
63790336 TTATCATTCG
Statistics
Matches: 166, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
118 14 0.08
119 92 0.55
120 60 0.36
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63792716 original size:9 final size:9
Alignment explanation
Indices: 63792702--63792734 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
63792692 TTAGTAATTA
63792702 TTTTTTCTT
1 TTTTTTCTT
*
63792711 TTTTTTCCT
1 TTTTTTCTT
63792720 TTTTTTCTT
1 TTTTTTCTT
63792729 TTTTTT
1 TTTTTT
63792735 GTTATTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:63792999 original size:119 final size:119
Alignment explanation
Indices: 63792862--63793087 Score: 353
Period size: 119 Copynumber: 1.9 Consensus size: 119
63792852 CTAGTTAGCT
*
63792862 GAGTTTTACCCATCACGTCACACAACCTTTTGACGCGAAGTAGAATGATAACCCAAGCACCCTAC
1 GAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGATAACCCAAGCACCCTAC
* * * *
63792927 CCCTGTTACTTAATCAGTCACGTTCTGAGCTGTACTTATAACCTCGGGTTAACG
66 CCCGGTTACTCAATCAGTCACGTTCTAAGCTGTACTCATAACCTCGGGTTAACG
* * * *
63792981 GAGTTTTACCTAACACGTCACAGAACTTTTTGACGCGAAGTAGAATGATAACCCAAGCACCTTAC
1 GAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGATAACCCAAGCACCCTAC
* *
63793046 CCCGGTTACTCAGTCAGTCACGTTTTAAGCTGTACTCATAAC
66 CCCGGTTACTCAATCAGTCACGTTCTAAGCTGTACTCATAAC
63793088 TATGGAAACA
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
119 96 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (119 bp):
GAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGATAACCCAAGCACCCTAC
CCCGGTTACTCAATCAGTCACGTTCTAAGCTGTACTCATAACCTCGGGTTAACG
Found at i:63793979 original size:5 final size:5
Alignment explanation
Indices: 63793969--63794036 Score: 61
Period size: 5 Copynumber: 13.6 Consensus size: 5
63793959 ATTAATATTC
* *
63793969 AAATA AAATA ATAA-A TAATA AAATA AAATA AAGTAA TAAATA AAA-A
1 AAATA AAATA A-AATA AAATA AAATA AAATA AAAT-A -AAATA AAATA
*
63794015 TAAT- AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAA
63794037 ATAGAAATTG
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
4 8 0.16
5 36 0.71
6 4 0.08
7 3 0.06
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.22
Consensus pattern (5 bp):
AAATA
Found at i:63793997 original size:13 final size:12
Alignment explanation
Indices: 63793969--63794029 Score: 79
Period size: 13 Copynumber: 4.9 Consensus size: 12
63793959 ATTAATATTC
63793969 AAATAAAATAAT
1 AAATAAAATAAT
63793981 AAATAATAA-AAT
1 AAATAA-AATAAT
*
63793993 AAAATAAAGTAAT
1 -AAATAAAATAAT
63794006 AAATAAAAATAAT
1 AAAT-AAAATAAT
63794019 AAATAAAATAA
1 AAATAAAATAA
63794030 AATAAAAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
12 21 0.49
13 22 0.51
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (12 bp):
AAATAAAATAAT
Found at i:63794000 original size:17 final size:17
Alignment explanation
Indices: 63793970--63794044 Score: 79
Period size: 17 Copynumber: 4.5 Consensus size: 17
63793960 TTAATATTCA
63793970 AATAAAAT--AATAAAT
1 AATAAAATAAAATAAAT
63793985 AATAAAATAAAATAAAGT
1 AATAAAATAAAATAAA-T
63794003 AAT-AAATAAAA-ATAAT
1 AATAAAATAAAATA-AAT
63794019 AAATAAAATAAAATAAA-
1 -AATAAAATAAAATAAAT
63794036 AATAGAAAT
1 AATA-AAAT
63794045 TGGGTTGCCT
Statistics
Matches: 52, Mismatches: 0, Indels: 14
0.79 0.00 0.21
Matches are distributed among these distances:
15 8 0.15
16 6 0.12
17 23 0.44
18 14 0.27
19 1 0.02
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (17 bp):
AATAAAATAAAATAAAT
Found at i:63794005 original size:25 final size:25
Alignment explanation
Indices: 63793975--63794039 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
63793965 ATTCAAATAA
*
63793975 AATAATAAATAATAA-AATAAAATAA
1 AATAATAAATAAAAATAAT-AAATAA
*
63794000 AGTAATAAATAAAAATAATAAATAA
1 AATAATAAATAAAAATAATAAATAA
63794025 AAT-A-AAATAAAAATA
1 AATAATAAATAAAAATA
63794040 GAAATTGGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 11 0.31
24 1 0.03
25 21 0.58
26 3 0.08
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (25 bp):
AATAATAAATAAAAATAATAAATAA
Found at i:63795723 original size:45 final size:47
Alignment explanation
Indices: 63795657--63795782 Score: 154
Period size: 45 Copynumber: 2.7 Consensus size: 47
63795647 AGTATATCTG
*
63795657 TGCCGATGCCATGTCCCAGACATGGTCTTACACTG-ACACATCTC-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGCACACATCTCAA
* * * *
63795702 TAGCCGATG-CATGTCCCAGACAT-ATTTTACA-TAGCACTCGTCTCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT-GCACACATCTCAA
63795748 TGCCGATGCCATGTCCCAGACATGGTCTTACACTG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTG
63795783 GCTCTCATAA
Statistics
Matches: 67, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
43 1 0.01
44 7 0.10
45 29 0.43
46 22 0.33
47 7 0.10
48 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGCACACATCTCAA
Found at i:63799197 original size:10 final size:10
Alignment explanation
Indices: 63799177--63799212 Score: 58
Period size: 9 Copynumber: 3.8 Consensus size: 10
63799167 CTATCCCTAT
63799177 AAAAT-ATTA
1 AAAATAATTA
63799186 AAAATAATTA
1 AAAATAATTA
63799196 AAAATAA-TA
1 AAAATAATTA
63799205 AAAATAAT
1 AAAATAAT
63799213 AGTATAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 14 0.56
10 11 0.44
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AAAATAATTA
Found at i:63800130 original size:20 final size:20
Alignment explanation
Indices: 63800107--63800155 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
63800097 TTAAATTTTA
63800107 AAAGATAAATACAAATAAAT-
1 AAAGATAAATA-AAATAAATG
* *
63800127 AAAGATAATTAAGATAAATG
1 AAAGATAAATAAAATAAATG
63800147 AAA-ATAAAT
1 AAAGATAAAT
63800156 CCTAAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.22
Consensus pattern (20 bp):
AAAGATAAATAAAATAAATG
Found at i:63800134 original size:10 final size:10
Alignment explanation
Indices: 63800107--63800155 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
63800097 TTAAATTTTA
63800107 AAAGATAAAT
1 AAAGATAAAT
63800117 ACAA-ATAAAT
1 A-AAGATAAAT
63800127 AAAGAT-AAT
1 AAAGATAAAT
*
63800136 TAAGATAAAT
1 AAAGATAAAT
63800146 GAAA-ATAAAT
1 -AAAGATAAAT
63800156 CCTAAAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
9 10 0.30
10 19 0.58
11 4 0.12
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:63801332 original size:64 final size:64
Alignment explanation
Indices: 63801259--63801469 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
63801249 CTGGGCCAGA
*
63801259 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * * * *
63801323 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTAGGTAATAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
63801385 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
63801396 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
63801460 GCCCATTTCA
1 GCCCATTTCA
63801470 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:63801471 original size:137 final size:137
Alignment explanation
Indices: 63801225--63801508 Score: 559
Period size: 137 Copynumber: 2.1 Consensus size: 137
63801215 TATTGGGCCT
*
63801225 AAGCCCATTCAGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
63801290 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
63801355 CATATGC
131 CATATGC
63801362 AAGCCCATTTAGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
63801427 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
63801492 CATATGC
131 CATATGC
63801499 AAGCCCATTT
1 AAGCCCATTT
63801509 GGGGAGACTA
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTAGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:63801796 original size:25 final size:27
Alignment explanation
Indices: 63801759--63801811 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
63801749 TCAAACATGC
63801759 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
* *
63801785 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
63801811 A
1 A
63801812 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTACTAGGGGT
Found at i:63803334 original size:26 final size:26
Alignment explanation
Indices: 63803296--63803379 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
63803286 CATGAAATTC
* *
63803296 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
63803322 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
63803348 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
63803374 TTATCA
1 TTATCA
63803380 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:63809706 original size:26 final size:26
Alignment explanation
Indices: 63809669--63809732 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
63809659 AAATACGCTC
* *
63809669 TCTCTTTGCTCTCATATTCTCTTTGT
1 TCTCTTTTCTCTCACATTCTCTTTGT
*
63809695 TCTCTTTTCTCTCCCATTCTCTTTGT
1 TCTCTTTTCTCTCACATTCTCTTTGT
63809721 TCT-TTATTCTCT
1 TCTCTT-TTCTCT
63809733 GTCTTTTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 2 0.06
26 32 0.94
ACGTcount: A:0.06, C:0.30, G:0.05, T:0.59
Consensus pattern (26 bp):
TCTCTTTTCTCTCACATTCTCTTTGT
Found at i:63810823 original size:23 final size:23
Alignment explanation
Indices: 63810775--63810823 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
63810765 AAATTATATT
*
63810775 TAATTATTTTCTAAATTTTTTCA
1 TAATTATTTTCTAAATTTTTTAA
63810798 TAATT-TTTT-TAACATTTCTTTAA
1 TAATTATTTTCTAA-ATTT-TTTAA
63810821 TAA
1 TAA
63810824 AATGGATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 3 0.13
22 8 0.35
23 12 0.52
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (23 bp):
TAATTATTTTCTAAATTTTTTAA
Found at i:63810916 original size:16 final size:17
Alignment explanation
Indices: 63810897--63810929 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
63810887 CTAGATTGAA
63810897 TTTAAAAAAT-AATATT
1 TTTAAAAAATAAATATT
*
63810913 TTTAAAATATAAATATT
1 TTTAAAAAATAAATATT
63810930 ATAATAGTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTAAAAAATAAATATT
Found at i:63812516 original size:20 final size:20
Alignment explanation
Indices: 63812490--63812558 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
63812480 GTTTATCTAT
63812490 ATATAAATATTAAATCATTA
1 ATATAAATATTAAATCATTA
* **
63812510 CTATAAATAAAATAAT-ATTA
1 ATATAAATATTA-AATCATTA
*
63812530 ATATTAATATTAAATCATTA
1 ATATAAATATTAAATCATTA
*
63812550 TTATAAATA
1 ATATAAATA
63812559 AAATAATATT
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
19 3 0.08
20 32 0.84
21 3 0.08
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATAAATATTAAATCATTA
Found at i:63812555 original size:40 final size:40
Alignment explanation
Indices: 63812490--63812568 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
63812480 GTTTATCTAT
63812490 ATATAAATATTAAATCATTACTATAAATAAAATAATATTA
1 ATATAAATATTAAATCATTACTATAAATAAAATAATATTA
* *
63812530 ATATTAATATTAAATCATTATTATAAATAAAATAATATT
1 ATATAAATATTAAATCATTACTATAAATAAAATAATATT
63812569 TTTTATTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (40 bp):
ATATAAATATTAAATCATTACTATAAATAAAATAATATTA
Found at i:63815600 original size:13 final size:13
Alignment explanation
Indices: 63815582--63815607 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63815572 TCGGTCGATT
63815582 AAAGAAGAATAAA
1 AAAGAAGAATAAA
63815595 AAAGAAGAATAAA
1 AAAGAAGAATAAA
63815608 TGAAGTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (13 bp):
AAAGAAGAATAAA
Found at i:63815886 original size:81 final size:81
Alignment explanation
Indices: 63815751--63815913 Score: 292
Period size: 81 Copynumber: 2.0 Consensus size: 81
63815741 TATTAACTAA
* *
63815751 ACAATCTAATCCCCTAATTGTAATAATTACTTACTTTTGTACCTTTTACAAATTAGTCCT-TTTT
1 ACAATCTAATCACCTAATTGTAATAATTACTTACTTTTGCACCTTTTACAAATTAGT-CTATTTT
63815815 TCTTTAATTAACTATCT
65 TCTTTAATTAACTATCT
63815832 ACAATCTAATCACCTAATTGTAATAATTACTTACTTTTGCACCTTTTACAAATTAGTCTATTTTT
1 ACAATCTAATCACCTAATTGTAATAATTACTTACTTTTGCACCTTTTACAAATTAGTCTATTTTT
63815897 CTTTAATTAACTATCT
66 CTTTAATTAACTATCT
63815913 A
1 A
63815914 AACGTTAAAA
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
80 2 0.03
81 77 0.97
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (81 bp):
ACAATCTAATCACCTAATTGTAATAATTACTTACTTTTGCACCTTTTACAAATTAGTCTATTTTT
CTTTAATTAACTATCT
Found at i:63820405 original size:22 final size:22
Alignment explanation
Indices: 63820377--63820448 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
63820367 GTATTTAAAA
63820377 AGAGTTTACATGTCGAGTCTAC
1 AGAGTTTACATGTCGAGTCTAC
** *
63820399 AGAGTTTGTA-AT-TAAAGTAT-C
1 AGAG-TT-TACATGTCGAGTCTAC
63820420 TA-AGTTTACATGTCGAGTCTAC
1 -AGAGTTTACATGTCGAGTCTAC
63820442 AGAGTTT
1 AGAGTTT
63820449 GTAATTAAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
19 2 0.05
20 4 0.11
21 9 0.24
22 16 0.43
23 4 0.11
24 2 0.05
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (22 bp):
AGAGTTTACATGTCGAGTCTAC
Found at i:63820428 original size:43 final size:43
Alignment explanation
Indices: 63820379--63820465 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
63820369 ATTTAAAAAG
63820379 AGTTTACATGTCGAGTCTACAGAGTTTGTAATTAAAGTATCTA
1 AGTTTACATGTCGAGTCTACAGAGTTTGTAATTAAAGTATCTA
63820422 AGTTTACATGTCGAGTCTACAGAGTTTGTAATTAAAGTATCTA
1 AGTTTACATGTCGAGTCTACAGAGTTTGTAATTAAAGTATCTA
63820465 A
1 A
63820466 CCCCTTGGCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (43 bp):
AGTTTACATGTCGAGTCTACAGAGTTTGTAATTAAAGTATCTA
Found at i:63832815 original size:23 final size:23
Alignment explanation
Indices: 63832789--63832840 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
63832779 GGACTCACCA
*
63832789 TAGCTTGTATGAGCTTACTGA-TT
1 TAGCTCGTATGAGCTTACT-ATTT
63832812 TAGCTCGTATGAGCTTACTATTT
1 TAGCTCGTATGAGCTTACTATTT
63832835 TAGCTC
1 TAGCTC
63832841 ATTGGGGCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 1 0.04
23 26 0.96
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.42
Consensus pattern (23 bp):
TAGCTCGTATGAGCTTACTATTT
Found at i:63832896 original size:45 final size:46
Alignment explanation
Indices: 63832799--63832897 Score: 130
Period size: 46 Copynumber: 2.2 Consensus size: 46
63832789 TAGCTTGTAT
* * *
63832799 GAGCTTACTGATTTAGCTCGTATGAGCTTACTATTTTAGCTCATTG
1 GAGCTTACTGATTCAACTCGTATGAGCTTACTATTTTAGCTCAATG
* *
63832845 GGGCTTATTGATTCAACTCG-ATAGAGCTTACT-TTTTAGCTCAATG
1 GAGCTTACTGATTCAACTCGTAT-GAGCTTACTATTTTAGCTCAATG
63832890 GAGCTTAC
1 GAGCTTAC
63832898 CATTTTCAGC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
45 20 0.44
46 25 0.56
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.38
Consensus pattern (46 bp):
GAGCTTACTGATTCAACTCGTATGAGCTTACTATTTTAGCTCAATG
Found at i:63832908 original size:24 final size:22
Alignment explanation
Indices: 63832856--63832920 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 22
63832846 GGCTTATTGA
* *
63832856 TTCAACTCGATAGAGCTTACTT
1 TTCAGCTCAATAGAGCTTACTT
* *
63832878 TTTAGCTCAATGGAGCTTACCATT
1 TTCAGCTCAATAGAGCTTA-C-TT
63832902 TTCAGCTCAATAGAGCTTA
1 TTCAGCTCAATAGAGCTTA
63832921 TTGTTTATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 15 0.43
23 1 0.03
24 19 0.54
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (22 bp):
TTCAGCTCAATAGAGCTTACTT
Found at i:63832915 original size:46 final size:45
Alignment explanation
Indices: 63832822--63832920 Score: 112
Period size: 46 Copynumber: 2.2 Consensus size: 45
63832812 TAGCTCGTAT
* * *
63832822 GAGCTTACTATTTTAGCTCATTGGGGCTTATTGATTCAACTCGATA
1 GAGCTTACTATTTTAGCTCAATGGAGCTTATT-ATTCAACTCAATA
*
63832868 GAGCTTACT-TTTTAGCTCAATGGAGCTTACCATT-TTCAGCTCAATA
1 GAGCTTACTATTTTAGCTCAATGGAGCTT---ATTATTCAACTCAATA
63832914 GAGCTTA
1 GAGCTTA
63832921 TTGTTTATCA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
45 17 0.37
46 26 0.57
48 3 0.07
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (45 bp):
GAGCTTACTATTTTAGCTCAATGGAGCTTATTATTCAACTCAATA
Found at i:63834411 original size:31 final size:31
Alignment explanation
Indices: 63834376--63834439 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
63834366 TTCATCAAAG
63834376 TAAAATTATGGATTGATTTGGACAATGTGAT
1 TAAAATTATGGATTGATTTGGACAATGTGAT
63834407 TAAAATTATGGATTGATTTGGACAATGTGAT
1 TAAAATTATGGATTGATTTGGACAATGTGAT
63834438 TA
1 TA
63834440 CTAAACAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (31 bp):
TAAAATTATGGATTGATTTGGACAATGTGAT
Found at i:63836378 original size:20 final size:20
Alignment explanation
Indices: 63836353--63836404 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
63836343 CAGGTTGAGG
63836353 ACACGGGCGTGTCTTAAGCC
1 ACACGGGCGTGTCTTAAGCC
63836373 ACACGGGCGTGTCTTAAGCC
1 ACACGGGCGTGTCTTAAGCC
63836393 ACACGGGCGTGT
1 ACACGGGCGTGT
63836405 GTGACCACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (20 bp):
ACACGGGCGTGTCTTAAGCC
Found at i:63839898 original size:41 final size:40
Alignment explanation
Indices: 63839719--63839929 Score: 208
Period size: 40 Copynumber: 5.2 Consensus size: 40
63839709 CAATTGAATG
* * * * **
63839719 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* * * * *
63839759 ATATCCGGGTTAAGACCCGAAGGCAATTGTTCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-TT
* * *
63839799 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* *
63839839 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-CGTT
* * *
63839880 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCAGATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-A-GTCGTT
63839922 ATATCCGG
1 ATATCCGG
63839930 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
40 95 0.67
41 33 0.23
42 11 0.08
43 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
Done.